RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13901
(157 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 67.0 bits (163), Expect = 6e-14
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 91 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDADFYPNGGNA 144
LDPA F +L DA+FV V+H+ + SQ +G DF+PNGG
Sbjct: 176 GLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGK- 234
Query: 145 PQPKCSSVP 153
P C
Sbjct: 235 QMPGCKRSS 243
Score = 62.7 bits (152), Expect = 2e-12
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 33 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDADFYPNGGNA 86
LDPA F +L DA+FV V+H+ + SQ +G DF+PNGG
Sbjct: 176 GLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGK- 234
Query: 87 PQP 89
P
Sbjct: 235 QMP 237
Score = 33.4 bits (76), Expect = 0.024
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 2 VVHSSGDILS------FSQPIGDADFYPNGGNTPQP 31
V+H+ + SQ +G DF+PNGG P
Sbjct: 203 VIHTDASPMLPSLGFGMSQKVGHMDFFPNGG-KQMP 237
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 65.4 bits (159), Expect = 2e-13
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 83 GGNAPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDAD 136
G + LDPA F P +L DA+FV V+H+ + SQ +G D
Sbjct: 168 NGLVGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMD 227
Query: 137 FYPNGGNAPQPKCSS 151
F+PNGG P C +
Sbjct: 228 FFPNGGK-DMPGCKT 241
Score = 61.9 bits (150), Expect = 4e-12
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 25 GGNTPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDAD 78
G + LDPA F P +L DA+FV V+H+ + SQ +G D
Sbjct: 168 NGLVGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMD 227
Query: 79 FYPNGGNAPQP 89
F+PNGG P
Sbjct: 228 FFPNGGK-DMP 237
Score = 32.3 bits (73), Expect = 0.050
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 2 VVHSSGDILS------FSQPIGDADFYPNGGNTPQP 31
V+H+ + SQ +G DF+PNGG P
Sbjct: 203 VIHTDISPILPSLGFGMSQKVGHMDFFPNGG-KDMP 237
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 63.2 bits (153), Expect = 1e-12
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 91 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADFYPNGGNA 144
LDPA F LP +L DA FV V+H+ + SQ +G DF+PNGG
Sbjct: 176 GLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGK- 234
Query: 145 PQPKCSSVP 153
P C
Sbjct: 235 EMPGCQKNI 243
Score = 58.9 bits (142), Expect = 4e-11
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 33 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADFYPNGGNA 86
LDPA F LP +L DA FV V+H+ + SQ +G DF+PNGG
Sbjct: 176 GLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGK- 234
Query: 87 PQP 89
P
Sbjct: 235 EMP 237
Score = 31.6 bits (71), Expect = 0.087
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 2 VVHSSGDIL------SFSQPIGDADFYPNGGNTPQP 31
V+H+ + SQ +G DF+PNGG P
Sbjct: 203 VIHTDSAPIIPYLGFGMSQKVGHLDFFPNGG-KEMP 237
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 62.7 bits (152), Expect = 2e-12
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDADFYPNGGNAP 145
LDPA F P +L DA+FV V+H+ SQ G DF+PNGG
Sbjct: 176 LDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGG-KE 234
Query: 146 QPKCSSVP 153
P C
Sbjct: 235 MPGCQKNV 242
Score = 58.5 bits (141), Expect = 5e-11
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDADFYPNGGNAP 87
LDPA F P +L DA+FV V+H+ SQ G DF+PNGG
Sbjct: 176 LDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGG-KE 234
Query: 88 QP 89
P
Sbjct: 235 MP 236
Score = 32.3 bits (73), Expect = 0.060
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 2 VVHSSGDILS------FSQPIGDADFYPNGGNTPQP 31
V+H+ SQ G DF+PNGG P
Sbjct: 202 VIHTDIAPFIPNLGFGMSQTAGHLDFFPNGG-KEMP 236
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 62.0 bits (150), Expect = 3e-12
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 91 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDADFYPNGGNA 144
LDP F P +L DA FV V+H+ L SQ +G DF+PNGG
Sbjct: 175 GLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGE- 233
Query: 145 PQPKCSSVP 153
P C
Sbjct: 234 EMPGCKKNA 242
Score = 58.2 bits (140), Expect = 7e-11
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 33 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILS------FSQPIGDADFYPNGGNA 86
LDP F P +L DA FV V+H+ L SQ +G DF+PNGG
Sbjct: 175 GLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGE- 233
Query: 87 PQP 89
P
Sbjct: 234 EMP 236
Score = 31.6 bits (71), Expect = 0.080
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 2 VVHSSGDILS------FSQPIGDADFYPNGGNTPQP 31
V+H+ L SQ +G DF+PNGG P
Sbjct: 202 VIHTDAAPLIPFLGFGTSQQMGHLDFFPNGG-EEMP 236
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein;
1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Length = 375
Score = 28.7 bits (63), Expect = 0.71
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 97 VRFGHLPPHEKLTADDARFVMVVHSSGDIL-SFSQPIGDADFYPNGGNAPQPKCSSVPDI 155
V FG +PP +L D M + S + G Y GG+ P P DI
Sbjct: 1 VEFGSMPPKRRLVDDAD--AMEDQDLYEPPASLPKLPGKFLQYTVGGSDPHPGIGHEKDI 58
Score = 25.7 bits (55), Expect = 7.8
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 39 VRFGHLPPHEKLTADDARFVMVVHSSGDIL-SFSQPIGDADFYPNGGNAPQP 89
V FG +PP +L D M + S + G Y GG+ P P
Sbjct: 1 VEFGSMPPKRRLVDDAD--AMEDQDLYEPPASLPKLPGKFLQYTVGGSDPHP 50
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, T thermophilus; 2.00A {Thermus
thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A*
2pc9_A*
Length = 529
Score = 27.3 bits (61), Expect = 2.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 41 FGHLPPHEKLTADDA 55
+G LPP +L+ ++A
Sbjct: 350 YGVLPPIARLSPEEA 364
Score = 27.3 bits (61), Expect = 2.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 99 FGHLPPHEKLTADDA 113
+G LPP +L+ ++A
Sbjct: 350 YGVLPPIARLSPEEA 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.139 0.432
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,558,331
Number of extensions: 147764
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 27
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)