BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13905
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin
Specific Chaperone B
Length = 113
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 163 IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
I VG RC++ D +R GTVM+VG T F G WVGV+ DEP GKN+G+V +YFEC+
Sbjct: 33 ISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQA 92
Query: 221 NYGMFVKPGRLTIGD 235
YG FVKP +T+GD
Sbjct: 93 KYGAFVKPSAVTVGD 107
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Query: 161 KDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
K+I VG RC++ R G V +VG TKF GVWVGVK DEP GKN+G+V V+YF+C
Sbjct: 13 KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDC 72
Query: 219 EENYGMFVKPGRLTIGDFPVLDPFDELDEI 248
+ YG FV+P + +GDFP L +DEI
Sbjct: 73 DPKYGGFVRPVDVKVGDFPEL----SIDEI 98
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Query: 161 KDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
K+I VG RC++ R G V +VG TKF GVWVGVK DEP GKN+G+V V+YF+C
Sbjct: 10 KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDC 69
Query: 219 EENYGMFVKPGRLTIGDFPVLDPFDELDEI 248
+ YG FV+P + +GDFP L +DEI
Sbjct: 70 DPKYGGFVRPVDVKVGDFPEL----SIDEI 95
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGE-TKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
++ I VG RC D R G+V FVG G WVGV+ DEP GK +GTVK + F+C
Sbjct: 3 METIHVGDRCLCRPGD-RLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQC 61
Query: 219 EENYGMFVKPGRLTIGDFP 237
+ NYG F++P ++ +GDFP
Sbjct: 62 QPNYGGFLRPDQVEVGDFP 80
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 77.4 bits (189), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
D VG+R +N + + G + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE
Sbjct: 2 DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 222 YGMFVKPGRLT 232
G+F +P +LT
Sbjct: 60 KGIFTRPSKLT 70
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
D VG+R +N + F + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE
Sbjct: 64 DFRVGERVWVNGNKPGF--IQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 121
Query: 222 YGMFVKPGRLT 232
G+F +P +LT
Sbjct: 122 KGIFTRPSKLT 132
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
D VG+R +N + + G + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE
Sbjct: 2 DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 222 YGMFVKPGRLT 232
G+F +P +LT
Sbjct: 60 KGIFTRPSKLT 70
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 75.1 bits (183), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
D VG+R +N + + G + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE
Sbjct: 3 DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 60
Query: 222 YGMFVKPGRLT 232
G+F +P + T
Sbjct: 61 KGIFTRPSKXT 71
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
L D VG+R +N V+ G V ++GET+F+ G W GV LD+P GKN+G V V+YFEC
Sbjct: 15 FLGDFVVGERVWVNG--VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFEC 72
Query: 219 EENYGMFVKPGRLT 232
G+F +P +LT
Sbjct: 73 PALQGIFTRPSKLT 86
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+++++G R + + + G V F+GET F+ G W GV+LDEP GKN+G V +YF+C+
Sbjct: 37 RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 94
Query: 221 NYGMFVKPGRLTIGDFPVLDP 241
YG+F ++T FP P
Sbjct: 95 KYGLFAPVHKVTKIGFPSTTP 115
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
VG+R +N + F + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE
Sbjct: 8 FRVGERVWVNGNKPGF--IQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 65
Query: 223 GMFVKPGRLT 232
G+F +P +LT
Sbjct: 66 GIFTRPSKLT 75
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+++++G R + + + G V F+GET F+ G W GV+LDEP GKN+G V +YF+C+
Sbjct: 8 RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 65
Query: 221 NYGMFVKPGRLTIGDFPVLDP 241
YG+F ++T FP P
Sbjct: 66 KYGLFAPVHKVTKIGFPSTTP 86
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
++++G R + + + G V F+GET F+ G W GV+LDEP GKN+G V +YF+C+
Sbjct: 1 ELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPK 58
Query: 222 YGMFVKPGRLTIGDFPVLDP 241
YG+F ++T FP P
Sbjct: 59 YGLFAPVHKVTKIGFPSTTP 78
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 177 RFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDF 236
R GT+ F G T F+ G W G++L++P GKN+G+V V+YF C YG+F P R+
Sbjct: 23 RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQR--- 79
Query: 237 PVLDPFDELDEI 248
V D D L EI
Sbjct: 80 -VTDSLDTLSEI 90
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
L D +G R I + V+ G + F GET F+ G W GV+LD+P G NNGT + YFEC+
Sbjct: 29 LFDFHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK 86
Query: 220 ENYGMFVKPGRLT 232
E +G+F P +++
Sbjct: 87 EKHGIFAPPQKIS 99
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin
1
Length = 112
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
+ + VG R ++ R GTV +VG T F++G WVGV LDE GKN+GTV+ KYF C+
Sbjct: 31 ARPLRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD 89
Query: 220 ENYGMFVKPGRLTI 233
E +G+FV+ ++ +
Sbjct: 90 EGHGIFVRQSQIQV 103
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
+ + VG R ++ R GTV +VG T F++G WVGV LDE GKN+GTV+ KYF C+
Sbjct: 10 ARPLRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD 68
Query: 220 ENYGMFVKPGRLTI 233
E +G+FV+ ++ +
Sbjct: 69 EGHGIFVRQSQIQV 82
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+ + VG R ++ R GTV +VG T F++G WVGV LDE GKN+GTV+ KYF C+E
Sbjct: 11 RPLRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69
Query: 221 NYGMFVKPGRLTI 233
+G+FV+ ++ +
Sbjct: 70 GHGIFVRQSQIQV 82
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+ + VG R ++ R GTV +VG T F++G WVGV LDE GKN+GTV+ KYF C+E
Sbjct: 11 RPLRVGSRVEVIGKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69
Query: 221 NYGMFVKPGRLTI 233
+G+FV+ ++ +
Sbjct: 70 GHGIFVRQSQIQV 82
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 71
Score = 68.9 bits (167), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
+ VG R ++ R GTV +VG T F++G WVGV LDE GKN+GTV+ KYF C+E +
Sbjct: 1 LRVGSRVEVIGKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 59
Query: 223 GMFVKPGRLTI 233
G+FV+ ++ +
Sbjct: 60 GIFVRQSQIQV 70
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
+++G R I V GT+ F G T+F+SG W G++LDEP GKNNG+V V+YF+C Y
Sbjct: 25 LKLGDRVVIAGQKV--GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKY 82
Query: 223 GMFV 226
G+F
Sbjct: 83 GIFA 86
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 180 TVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232
TV +VG T F+SG+W+G++L GKN+G V D +YF C+ NYG+ V+P R+T
Sbjct: 29 TVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVT 81
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFV 226
G V +VGET F+ G W GV+LDEP GKN+G V +YF+C +G+F
Sbjct: 22 GVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFA 69
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232
GT+ F G T+F+SG WVGV+LDEP GKN+G+V V+YF C G+F +++
Sbjct: 31 GTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKIS 84
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin-
Like Protein Kif13b
Length = 100
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRL 231
G V +VG F G WVGV+LD P GKN+G++ +YF C YG+ V+P R+
Sbjct: 38 GVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRV 90
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRL-TIGDFP 237
G V F G+T F+ G W G++LD+P GK++G+V V+YF C +G+F R+ IG P
Sbjct: 40 GIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP 99
>pdb|1V6E|A Chain A, Solution Structure Of A N-Terminal Ubiquitin-Like Domain
In Mouse Tubulin-Specific Chaperone B
Length = 95
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 42 TIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96
TI E K KLEL+ G +S M + LY + S L LLG YPV++ + V
Sbjct: 30 TIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84
>pdb|1IXD|A Chain A, Solution Structure Of The Cap-Gly Domain From Human
Cylindromatosis Tomour-Suppressor Cyld
Length = 104
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKL-DEPFGKNNGTVKDVKYFECEEN 221
+EVG ++ ++ +G + ++G+ + V G++L DE G +GT + +YF C
Sbjct: 18 LEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALK 77
Query: 222 YGMFVK 227
+FVK
Sbjct: 78 KALFVK 83
>pdb|2KJR|A Chain A, Solution Nmr Structure Of The N-Terminal Ubiquitin-Like
Domain From Tubulin-Binding Cofactor B, Cg11242, From
Drosophila Melanogaster. Northeast Structural Genomics
Consortium Target Fr629a (Residues 8-92)
Length = 95
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 42 TIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96
T+ +LK KLE+LTG + M + ++ + VS + +N LG Y + + L V
Sbjct: 39 TVAQLKTKLEILTGGCAGTMKVQVF-KGDTCVSTMDNNDAQLGYYANSDGLRLHV 92
>pdb|1T0Y|A Chain A, Solution Structure Of A Ubiquitin-Like Domain From
Tubulin- Binding Cofactor B
Length = 122
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 42 TIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN 90
++ +LK+KLEL+ G +M I L++ + L L+D + L V +
Sbjct: 29 SLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD 77
>pdb|2IUW|A Chain A, Crystal Structure Of Human Abh3 In Complex With Iron Ion
And 2-Oxoglutarate
Length = 238
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 46 LKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV 88
LK ++E TG +++ +LY D V SD+ LG+ P+
Sbjct: 113 LKNRIEENTGHTFNSLXCNLYRNEKDSVDWHSDDEPSLGRCPI 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,834,556
Number of Sequences: 62578
Number of extensions: 255402
Number of successful extensions: 383
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 34
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)