Query psy13905
Match_columns 248
No_of_seqs 253 out of 1103
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:27:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3206|consensus 100.0 1.4E-68 3.1E-73 458.7 20.4 218 16-244 1-233 (234)
2 PF01302 CAP_GLY: CAP-Gly doma 99.9 5E-27 1.1E-31 172.1 8.0 68 165-232 1-69 (69)
3 cd01789 Alp11_N Ubiquitin-like 99.9 7.2E-22 1.6E-26 149.7 10.1 82 16-100 1-82 (84)
4 PF14560 Ubiquitin_2: Ubiquiti 99.9 1.6E-21 3.6E-26 148.0 9.3 82 16-100 1-84 (87)
5 KOG0971|consensus 99.8 6.2E-20 1.3E-24 183.6 6.3 73 160-233 3-75 (1243)
6 COG5244 NIP100 Dynactin comple 99.8 1.2E-19 2.5E-24 172.3 6.8 68 161-231 2-69 (669)
7 KOG3207|consensus 99.6 2.5E-16 5.5E-21 149.5 7.0 68 163-233 3-72 (505)
8 KOG4568|consensus 99.6 3.2E-16 7E-21 156.4 4.7 73 158-232 13-85 (664)
9 cd01812 BAG1_N Ubiquitin-like 99.3 2.7E-12 5.8E-17 92.8 6.2 69 17-97 1-69 (71)
10 cd01809 Scythe_N Ubiquitin-lik 99.3 1.1E-11 2.4E-16 89.5 6.9 71 17-98 1-71 (72)
11 cd01806 Nedd8 Nebb8-like ubiq 99.3 2E-11 4.4E-16 89.0 7.2 70 18-98 2-71 (76)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.2 2.7E-11 6E-16 89.6 7.1 69 17-97 2-71 (73)
13 cd01799 Hoil1_N Ubiquitin-like 99.2 2.4E-11 5.2E-16 90.4 6.7 57 34-97 16-73 (75)
14 PTZ00044 ubiquitin; Provisiona 99.2 2.5E-11 5.4E-16 89.1 6.5 70 18-98 2-71 (76)
15 cd01793 Fubi Fubi ubiquitin-li 99.2 2.6E-11 5.6E-16 89.2 6.4 67 18-97 2-68 (74)
16 cd01800 SF3a120_C Ubiquitin-li 99.2 1.7E-11 3.7E-16 90.8 5.3 58 34-98 11-68 (76)
17 KOG4568|consensus 99.2 2.7E-12 5.9E-17 128.5 0.6 77 160-238 152-228 (664)
18 cd01807 GDX_N ubiquitin-like d 99.2 7.4E-11 1.6E-15 86.7 6.7 69 18-97 2-70 (74)
19 cd01790 Herp_N Homocysteine-re 99.2 6.3E-11 1.4E-15 89.1 6.0 72 17-97 2-77 (79)
20 cd01813 UBP_N UBP ubiquitin pr 99.2 8.8E-11 1.9E-15 87.0 6.6 73 17-98 1-73 (74)
21 cd01808 hPLIC_N Ubiquitin-like 99.1 1E-10 2.2E-15 85.3 6.5 69 17-97 1-69 (71)
22 cd01803 Ubiquitin Ubiquitin. U 99.1 1E-10 2.2E-15 85.3 6.4 70 18-98 2-71 (76)
23 cd01796 DDI1_N DNA damage indu 99.1 8.6E-11 1.9E-15 86.0 5.9 58 34-97 13-70 (71)
24 cd01794 DC_UbP_C dendritic cel 99.1 1.5E-10 3.2E-15 84.9 5.8 57 34-97 12-68 (70)
25 KOG3556|consensus 99.1 1.3E-10 2.9E-15 112.2 6.8 80 161-240 234-322 (724)
26 cd01798 parkin_N amino-termina 99.1 1.8E-10 3.9E-15 83.6 5.9 57 34-97 12-68 (70)
27 KOG0241|consensus 99.1 4.3E-11 9.2E-16 121.6 3.4 70 158-233 1626-1695(1714)
28 PF00240 ubiquitin: Ubiquitin 99.1 2.2E-10 4.8E-15 82.3 5.9 59 33-98 8-66 (69)
29 cd01797 NIRF_N amino-terminal 99.1 2.4E-10 5.3E-15 85.4 6.3 70 18-97 2-72 (78)
30 cd01810 ISG15_repeat2 ISG15 ub 99.1 3.4E-10 7.4E-15 83.2 6.1 69 19-98 1-69 (74)
31 cd01804 midnolin_N Ubiquitin-l 99.1 5.4E-10 1.2E-14 83.3 7.1 71 17-99 2-72 (78)
32 cd01802 AN1_N ubiquitin-like d 99.0 7.6E-10 1.7E-14 87.0 7.6 72 16-98 27-98 (103)
33 cd01792 ISG15_repeat1 ISG15 ub 99.0 8.2E-10 1.8E-14 82.5 6.4 74 17-99 3-76 (80)
34 cd01805 RAD23_N Ubiquitin-like 99.0 1.2E-09 2.6E-14 80.3 7.1 70 18-98 2-73 (77)
35 cd01815 BMSC_UbP_N Ubiquitin-l 98.9 1.2E-09 2.7E-14 81.3 4.4 53 39-98 19-74 (75)
36 KOG0005|consensus 98.9 9.7E-10 2.1E-14 78.1 2.3 57 34-97 14-70 (70)
37 smart00213 UBQ Ubiquitin homol 98.9 4.4E-09 9.6E-14 73.5 5.6 63 18-92 2-64 (64)
38 cd01795 USP48_C USP ubiquitin- 98.9 5.1E-09 1.1E-13 81.7 6.2 61 34-100 18-78 (107)
39 cd01769 UBL Ubiquitin-like dom 98.8 8.3E-09 1.8E-13 73.0 6.1 58 34-98 11-68 (69)
40 cd01763 Sumo Small ubiquitin-r 98.7 7.7E-08 1.7E-12 73.1 8.0 75 12-97 7-81 (87)
41 KOG0010|consensus 98.6 6.5E-08 1.4E-12 93.4 6.3 74 15-100 14-87 (493)
42 cd01814 NTGP5 Ubiquitin-like N 98.5 1.3E-07 2.7E-12 75.5 5.1 72 16-98 4-89 (113)
43 TIGR00601 rad23 UV excision re 98.4 4.4E-07 9.6E-12 86.2 6.8 71 18-99 2-75 (378)
44 KOG0004|consensus 98.3 4E-07 8.6E-12 76.2 3.3 59 34-99 14-72 (156)
45 PLN02560 enoyl-CoA reductase 98.3 2.2E-06 4.7E-11 79.6 8.3 67 34-100 17-84 (308)
46 PF11976 Rad60-SLD: Ubiquitin- 98.3 1.9E-06 4E-11 62.4 5.6 70 17-97 1-71 (72)
47 KOG0003|consensus 98.2 2.4E-07 5.3E-12 73.2 -0.5 58 34-98 14-71 (128)
48 cd01801 Tsc13_N Ubiquitin-like 98.1 6.9E-06 1.5E-10 60.8 6.4 57 38-99 20-77 (77)
49 cd00196 UBQ Ubiquitin-like pro 97.7 0.00011 2.4E-09 48.2 5.6 58 34-98 11-68 (69)
50 PF11543 UN_NPL4: Nuclear pore 97.6 7.8E-05 1.7E-09 56.1 3.8 74 17-97 5-78 (80)
51 KOG0011|consensus 97.5 0.00013 2.9E-09 67.8 5.5 68 18-96 2-71 (340)
52 cd01811 OASL_repeat1 2'-5' oli 97.5 0.00051 1.1E-08 51.2 7.5 63 34-99 14-76 (80)
53 KOG4248|consensus 97.4 0.00017 3.6E-09 75.3 5.4 69 18-98 4-72 (1143)
54 KOG0001|consensus 97.4 0.00084 1.8E-08 46.5 6.8 58 34-98 13-70 (75)
55 cd01788 ElonginB Ubiquitin-lik 97.3 0.00062 1.3E-08 54.6 5.8 47 35-88 16-62 (119)
56 KOG2982|consensus 97.2 0.0005 1.1E-08 64.1 5.1 63 34-97 351-415 (418)
57 PF13881 Rad60-SLD_2: Ubiquiti 97.1 0.001 2.2E-08 53.2 5.6 58 34-98 17-87 (111)
58 KOG1872|consensus 96.7 0.0075 1.6E-07 58.6 8.4 73 17-100 4-76 (473)
59 KOG4495|consensus 96.5 0.004 8.7E-08 48.6 4.2 57 35-96 16-79 (110)
60 PF08817 YukD: WXG100 protein 95.7 0.013 2.9E-07 43.4 3.6 72 16-96 2-78 (79)
61 PF14836 Ubiquitin_3: Ubiquiti 95.5 0.093 2E-06 40.4 7.7 63 34-98 17-79 (88)
62 cd06406 PB1_P67 A PB1 domain i 95.2 0.049 1.1E-06 41.2 5.2 48 16-71 4-51 (80)
63 PRK10708 hypothetical protein; 95.1 0.1 2.3E-06 36.9 6.3 57 163-229 1-61 (62)
64 PF10781 DSRB: Dextransucrase 95.1 0.097 2.1E-06 37.0 6.1 57 163-229 1-61 (62)
65 PTZ00243 ABC transporter; Prov 94.8 0.044 9.5E-07 60.9 5.7 63 156-218 118-196 (1560)
66 smart00666 PB1 PB1 domain. Pho 94.6 0.13 2.8E-06 37.7 6.1 41 34-74 14-54 (81)
67 PF00789 UBX: UBX domain; Int 94.4 0.6 1.3E-05 34.3 9.5 77 13-97 3-81 (82)
68 KOG3493|consensus 93.6 0.022 4.8E-07 41.5 0.3 56 34-96 15-70 (73)
69 cd06407 PB1_NLP A PB1 domain i 93.4 0.37 7.9E-06 36.4 6.7 51 18-73 2-53 (82)
70 PF00564 PB1: PB1 domain; Int 93.0 0.34 7.3E-06 35.5 5.9 77 17-98 2-83 (84)
71 cd05992 PB1 The PB1 domain is 92.1 0.69 1.5E-05 33.5 6.5 41 34-74 13-54 (81)
72 PF13019 Telomere_Sde2: Telome 91.2 1.4 3E-05 37.6 8.2 77 17-97 1-82 (162)
73 cd01774 Faf1_like2_UBX Faf1 ik 90.5 2 4.3E-05 32.5 7.7 79 15-99 3-85 (85)
74 cd06398 PB1_Joka2 The PB1 doma 89.2 1.6 3.4E-05 33.7 6.3 36 39-74 23-59 (91)
75 cd06408 PB1_NoxR The PB1 domai 88.0 1.9 4.2E-05 33.0 6.0 49 17-72 3-51 (86)
76 smart00166 UBX Domain present 87.9 3.8 8.3E-05 30.0 7.5 75 15-97 3-79 (80)
77 cd06396 PB1_NBR1 The PB1 domai 87.8 2.6 5.6E-05 31.9 6.6 49 17-72 1-51 (81)
78 cd01771 Faf1_UBX Faf1 UBX doma 86.3 5.5 0.00012 29.7 7.6 78 13-97 1-78 (80)
79 cd01770 p47_UBX p47-like ubiqu 85.3 5.9 0.00013 29.4 7.3 73 14-94 2-75 (79)
80 cd06397 PB1_UP1 Uncharacterize 85.0 3.2 7E-05 31.5 5.7 40 35-74 14-53 (82)
81 cd01773 Faf1_like1_UBX Faf1 ik 84.9 7.8 0.00017 29.3 7.9 81 12-99 1-81 (82)
82 PF10302 DUF2407: DUF2407 ubiq 84.1 3.2 6.9E-05 32.3 5.6 50 17-72 3-54 (97)
83 KOG0006|consensus 84.0 2.7 5.9E-05 39.6 6.0 58 33-97 16-73 (446)
84 KOG1639|consensus 82.7 2.9 6.3E-05 38.2 5.5 63 34-100 16-80 (297)
85 cd01772 SAKS1_UBX SAKS1-like U 79.9 12 0.00027 27.5 7.3 75 16-97 4-78 (79)
86 cd01767 UBX UBX (ubiquitin reg 79.3 13 0.00028 27.0 7.1 70 16-94 2-73 (77)
87 cd06404 PB1_aPKC PB1 domain is 76.7 12 0.00027 28.5 6.4 64 34-98 13-82 (83)
88 cd06411 PB1_p51 The PB1 domain 73.0 5.9 0.00013 29.8 3.9 38 34-71 10-47 (78)
89 PF08337 Plexin_cytopl: Plexin 72.6 16 0.00034 36.8 7.9 80 16-99 189-289 (539)
90 cd06410 PB1_UP2 Uncharacterize 71.9 13 0.00028 28.9 5.7 35 34-69 26-60 (97)
91 PF09926 DUF2158: Uncharacteri 70.3 17 0.00036 25.3 5.4 45 163-208 1-45 (53)
92 KOG4250|consensus 68.8 7.6 0.00016 40.2 4.8 46 16-66 315-360 (732)
93 KOG0013|consensus 68.1 9.4 0.0002 34.0 4.6 58 34-98 160-219 (231)
94 PRK08364 sulfur carrier protei 68.1 42 0.0009 24.0 7.4 49 34-98 17-65 (70)
95 TIGR02958 sec_mycoba_snm4 secr 67.8 35 0.00076 33.5 9.1 75 16-99 2-80 (452)
96 KOG1769|consensus 66.9 46 0.00099 26.2 7.8 74 14-98 18-91 (99)
97 PF10209 DUF2340: Uncharacteri 66.8 14 0.00031 30.0 5.1 64 35-98 20-107 (122)
98 PRK06083 sulfur carrier protei 65.9 32 0.0007 25.9 6.6 70 10-98 10-79 (84)
99 KOG4583|consensus 65.8 3 6.5E-05 39.5 1.2 55 13-72 6-62 (391)
100 cd00754 MoaD Ubiquitin domain 63.9 23 0.00051 25.2 5.5 53 34-98 19-75 (80)
101 cd06409 PB1_MUG70 The MUG70 pr 61.8 27 0.00059 26.6 5.6 40 34-73 14-56 (86)
102 PRK06437 hypothetical protein; 60.5 29 0.00063 24.8 5.3 49 34-98 14-62 (67)
103 cd06402 PB1_p62 The PB1 domain 57.4 21 0.00046 27.3 4.4 63 35-98 17-86 (87)
104 PF14732 UAE_UbL: Ubiquitin/SU 56.8 8.7 0.00019 29.1 2.1 58 39-99 7-69 (87)
105 cd05124 AFK Actin-Fragmin Kina 54.9 33 0.00071 31.1 5.8 58 4-66 1-58 (238)
106 cd00565 ThiS ThiaminS ubiquiti 51.3 56 0.0012 22.8 5.5 53 34-98 8-60 (65)
107 COG3462 Predicted membrane pro 51.0 7.9 0.00017 31.0 1.1 18 111-128 100-117 (117)
108 TIGR01683 thiS thiamine biosyn 50.1 55 0.0012 22.8 5.3 53 34-98 7-59 (64)
109 PF14533 USP7_C2: Ubiquitin-sp 45.2 69 0.0015 28.0 6.2 69 16-86 20-90 (213)
110 PRK05886 yajC preprotein trans 44.0 62 0.0013 25.8 5.2 35 158-200 34-68 (109)
111 PF09851 SHOCT: Short C-termin 43.4 16 0.00034 22.4 1.3 15 113-127 16-30 (31)
112 PF11470 TUG-UBL1: GLUT4 regul 43.3 28 0.0006 25.1 2.8 55 34-95 10-64 (65)
113 PRK05659 sulfur carrier protei 43.2 84 0.0018 21.7 5.4 53 34-98 9-61 (66)
114 COG5417 Uncharacterized small 43.2 1.4E+02 0.0031 22.5 6.8 56 34-96 20-80 (81)
115 PF14001 YdfZ: YdfZ protein 42.7 32 0.00069 25.0 3.0 23 161-184 8-30 (64)
116 PF12436 USP7_ICP0_bdg: ICP0-b 40.9 37 0.00079 30.5 3.9 36 32-67 191-226 (249)
117 TIGR00739 yajC preprotein tran 38.3 48 0.001 25.0 3.6 35 158-200 33-67 (84)
118 PF08825 E2_bind: E2 binding d 37.8 12 0.00027 28.3 0.3 63 35-100 1-72 (84)
119 PF00788 RA: Ras association ( 37.1 1E+02 0.0023 22.2 5.3 64 15-82 3-70 (93)
120 PRK06488 sulfur carrier protei 36.9 1.1E+02 0.0025 21.2 5.2 51 35-98 10-60 (65)
121 PF14533 USP7_C2: Ubiquitin-sp 35.3 38 0.00083 29.6 3.1 36 33-68 135-173 (213)
122 cd01817 RGS12_RBD Ubiquitin do 34.8 1.3E+02 0.0029 22.3 5.4 49 34-84 13-61 (73)
123 PF14801 GCD14_N: tRNA methylt 34.7 28 0.0006 24.5 1.6 47 161-210 4-52 (54)
124 PRK06531 yajC preprotein trans 33.3 60 0.0013 26.0 3.6 27 158-186 32-58 (113)
125 PRK05863 sulfur carrier protei 33.0 1.3E+02 0.0029 21.0 5.1 52 34-98 9-60 (65)
126 cd02413 40S_S3_KH K homology R 31.6 2.2E+02 0.0047 21.2 7.3 51 10-66 25-75 (81)
127 PRK07440 hypothetical protein; 31.3 1.4E+02 0.0031 21.3 5.1 53 34-98 13-65 (70)
128 COG3350 Uncharacterized conser 31.1 21 0.00046 24.9 0.6 29 194-222 7-35 (53)
129 PRK05585 yajC preprotein trans 29.9 74 0.0016 25.1 3.6 35 158-200 48-82 (106)
130 smart00739 KOW KOW (Kyprides, 27.5 1.1E+02 0.0024 17.1 3.3 12 163-174 2-13 (28)
131 PF07238 PilZ: PilZ domain; I 27.4 1.2E+02 0.0027 21.5 4.3 38 162-201 44-87 (102)
132 cd01760 RBD Ubiquitin-like dom 26.7 2.1E+02 0.0046 20.9 5.3 50 34-83 13-62 (72)
133 TIGR01682 moaD molybdopterin c 26.1 1.8E+02 0.0038 20.9 4.9 56 34-98 19-75 (80)
134 cd06403 PB1_Par6 The PB1 domai 26.0 2.6E+02 0.0056 21.2 5.7 38 35-72 12-53 (80)
135 PF15044 CLU_N: Mitochondrial 25.9 1.1E+02 0.0024 22.5 3.7 58 37-101 1-60 (76)
136 TIGR02266 gmx_TIGR02266 Myxoco 25.9 2E+02 0.0043 20.9 5.2 43 160-202 34-83 (96)
137 PRK08053 sulfur carrier protei 25.7 2.4E+02 0.0051 19.7 5.6 53 34-98 9-61 (66)
138 PRK06944 sulfur carrier protei 24.9 2.3E+02 0.005 19.3 5.9 52 34-98 9-60 (65)
139 PF08783 DWNN: DWNN domain; I 24.4 1.1E+02 0.0023 22.7 3.4 38 34-71 13-52 (74)
140 PRK07696 sulfur carrier protei 24.0 2.4E+02 0.0051 20.0 5.1 53 34-98 9-62 (67)
141 PF12436 USP7_ICP0_bdg: ICP0-b 23.6 82 0.0018 28.2 3.2 83 12-99 64-152 (249)
142 PF13437 HlyD_3: HlyD family s 23.1 1.9E+02 0.0041 21.4 4.7 39 160-198 47-90 (105)
143 CHL00141 rpl24 ribosomal prote 23.0 98 0.0021 23.3 3.0 23 162-184 8-32 (83)
144 PF10500 SR-25: Nuclear RNA-sp 22.7 43 0.00092 30.1 1.1 17 112-128 158-174 (225)
145 PF05120 GvpG: Gas vesicle pro 22.5 68 0.0015 24.1 2.0 21 112-132 47-67 (79)
146 PF00924 MS_channel: Mechanose 21.9 76 0.0017 26.6 2.5 26 160-188 58-83 (206)
147 PF15290 Syntaphilin: Golgi-lo 21.8 39 0.00085 31.4 0.7 22 204-225 21-52 (305)
148 PF12882 NUT_C: NUT protein C 21.3 15 0.00032 30.8 -1.9 8 6-13 27-34 (144)
149 TIGR01687 moaD_arch MoaD famil 20.9 3.3E+02 0.0072 19.7 6.7 20 34-54 19-38 (88)
150 PRK12281 rplX 50S ribosomal pr 20.9 1.2E+02 0.0025 22.5 3.0 23 162-184 6-30 (76)
151 PF14451 Ub-Mut7C: Mut7-C ubiq 20.8 3E+02 0.0065 20.5 5.3 50 34-98 26-75 (81)
152 PF02017 CIDE-N: CIDE-N domain 20.8 1.4E+02 0.0031 22.4 3.4 33 39-72 19-51 (78)
153 cd01775 CYR1_RA Ubiquitin doma 20.3 4.3E+02 0.0093 20.7 6.7 62 34-97 16-85 (97)
154 COG1862 YajC Preprotein transl 20.1 2.7E+02 0.0058 21.7 5.0 28 158-187 39-66 (97)
No 1
>KOG3206|consensus
Probab=100.00 E-value=1.4e-68 Score=458.70 Aligned_cols=218 Identities=38% Similarity=0.646 Sum_probs=193.5
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
+|+|.|+|++..+.+ |+|+++++||.+||.||+..||++|++|+|+|++.+++.+..|+++++.|++|+..||.+||
T Consensus 1 ~v~v~Iss~~~~~~~---Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rih 77 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRT---EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIH 77 (234)
T ss_pred CeEEEEecccccchh---hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEE
Confidence 489999999888766 99999999999999999999999999999999999888888999999999999999999999
Q ss_pred EEeCC------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh----hHH-h-hHHHHhhhcchhhhhhhhhhhcCCC
Q psy13905 96 VEGNY------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK----EER-L-RREALLKENNEEKDKCLEENILKDI 163 (248)
Q Consensus 96 VvD~~------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (248)
|+|++ +.| .|.|+||+||+|+|.+|+||||+||++++ |.+ + +.++++ +++..++.+...+
T Consensus 78 viD~~~~~~~~~~d--~s~veky~iSee~Y~qRtdSvr~~kk~~~~gryn~~~~~q~ea~~------~~~~~e~~~~~~i 149 (234)
T KOG3206|consen 78 VIDSNAQSISNTED--ESIVEKYEISEEDYLQRTDSVRRFKKKHGYGRYNAEEQAQAEAEA------KQDLAEERAQATI 149 (234)
T ss_pred EEecCccccccccc--cccceeeecCHHHHhhhhHHHHHHHHHhcccccchhhhhHHHHHh------HHHHHHHHHhhcc
Confidence 99998 678 99999999999999999999999999998 333 2 222221 2233333344449
Q ss_pred ccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCCCCC
Q psy13905 164 EVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDP 241 (248)
Q Consensus 164 ~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~d~ 241 (248)
.||.||+|. ++++|||+|||+|++++++|+||||++|||.|||||+++|+|||+|+|+||.||||..|++||||+.|+
T Consensus 150 ~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF~c~p~yGgfVrP~~V~VgdfpeeD~ 229 (234)
T KOG3206|consen 150 AVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPEEDF 229 (234)
T ss_pred ccCCeeEEecCCCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEeeecCCccCCccccceeeecCCChhhc
Confidence 999999998 556899999999999999999999999999999999999999999999999999999999999999884
Q ss_pred -CCc
Q psy13905 242 -FDE 244 (248)
Q Consensus 242 -~de 244 (248)
+||
T Consensus 230 ~~DE 233 (234)
T KOG3206|consen 230 SDDE 233 (234)
T ss_pred cccc
Confidence 444
No 2
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.94 E-value=5e-27 Score=172.14 Aligned_cols=68 Identities=53% Similarity=1.045 Sum_probs=60.4
Q ss_pred cCCEEEEcCCCCceeEEEEecccC-CCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905 165 VGKRCKINDSDVRFGTVMFVGETK-FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232 (248)
Q Consensus 165 vG~Rv~v~~~~~~~G~vryvG~~~-~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 232 (248)
||+||.|.....++|+|||+|+++ +++|.|+|||||+|.|+|||+++|+|||+|+|+||+|||+++|+
T Consensus 1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~~~~G~Fv~~~~v~ 69 (69)
T PF01302_consen 1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECPPNHGIFVRPSKVE 69 (69)
T ss_dssp TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SSTTTEEEEEGGGE-
T ss_pred CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeCCCCEEEecHHHCC
Confidence 799999943337999999999999 68899999999999999999999999999999999999999874
No 3
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.87 E-value=7.2e-22 Score=149.70 Aligned_cols=82 Identities=40% Similarity=0.564 Sum_probs=74.3
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
+|+|.|+|+...+.+ ||||+++|||++||+||+.+||+||++|+|+++++.+..++.|++|.++|++|++++|++||
T Consensus 1 ~v~v~i~~~~~~~~~---ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~Ih 77 (84)
T cd01789 1 TVTVNITSSADSFSF---EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIH 77 (84)
T ss_pred CEEEEEEeCCCceee---eEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEE
Confidence 478999987755556 99999999999999999999999999999999988776677789999999999999999999
Q ss_pred EEeCC
Q psy13905 96 VEGNY 100 (248)
Q Consensus 96 VvD~~ 100 (248)
|+|++
T Consensus 78 VvD~~ 82 (84)
T cd01789 78 VIDVS 82 (84)
T ss_pred EEeCC
Confidence 99974
No 4
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.86 E-value=1.6e-21 Score=148.01 Aligned_cols=82 Identities=34% Similarity=0.524 Sum_probs=71.7
Q ss_pred eEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEE-eCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 16 TVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLY-NRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 16 ~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~-~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
+|+|+|||+.+. +.. |+||++++||++||+||+.+||+||++|+|.++ +.++..+..+++|.++|++||+++|++
T Consensus 1 ~v~l~It~~~~~~~~~---ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~ 77 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSV---EKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMR 77 (87)
T ss_dssp EEEEEEEESSSSSSEE---EEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEE
T ss_pred CEEEEEEeCCCCCeeE---EEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCE
Confidence 589999998874 335 999999999999999999999999999999999 566667788899999999999999999
Q ss_pred EEEEeCC
Q psy13905 94 LFVEGNY 100 (248)
Q Consensus 94 IhVvD~~ 100 (248)
|||+|++
T Consensus 78 i~V~D~~ 84 (87)
T PF14560_consen 78 IHVVDTN 84 (87)
T ss_dssp EEEEE-T
T ss_pred EEEEeCC
Confidence 9999975
No 5
>KOG0971|consensus
Probab=99.79 E-value=6.2e-20 Score=183.63 Aligned_cols=73 Identities=48% Similarity=0.928 Sum_probs=68.8
Q ss_pred cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI 233 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~ 233 (248)
+..|+||.||+|.+. ..+|+|.|+|.+.|+.|.||||-||+|.|||||||+|++||+|++|||+|||++.|.+
T Consensus 3 ~r~lkvG~RVevtgk-nl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r~ 75 (1243)
T KOG0971|consen 3 PRSLKVGTRVEVTGK-NLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVRE 75 (1243)
T ss_pred CccccccceEEeccC-CccceEEEecccccccCceEEEEeccccCCCCCcccceeeEecCCCcceEeehhhhHH
Confidence 457999999999975 6899999999999999999999999999999999999999999999999999999754
No 6
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.79 E-value=1.2e-19 Score=172.31 Aligned_cols=68 Identities=44% Similarity=1.019 Sum_probs=63.3
Q ss_pred CCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCC
Q psy13905 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRL 231 (248)
Q Consensus 161 ~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v 231 (248)
.-+.|||||.|.+ ..|+|||+|.+.|+.|+|+|||||.|.||||||++|+|||.|..+||+|+||..=
T Consensus 2 s~lSv~D~Vll~~---~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk~~giFir~~~~ 69 (669)
T COG5244 2 SLLSVNDRVLLGD---KFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDD 69 (669)
T ss_pred ceeecCCEEEecc---ccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEEEecCCcceEEecCch
Confidence 3478999999986 5899999999999999999999999999999999999999999999999997653
No 7
>KOG3207|consensus
Probab=99.64 E-value=2.5e-16 Score=149.49 Aligned_cols=68 Identities=38% Similarity=0.821 Sum_probs=64.3
Q ss_pred CccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCC-CCCceeEcCeEeeecC-CCceeeEcCCCCcc
Q psy13905 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPF-GKNNGTVKDVKYFECE-ENYGMFVKPGRLTI 233 (248)
Q Consensus 163 ~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~-GkndGs~~G~rYF~c~-~~~G~Fv~~~~v~~ 233 (248)
.++|+||.|.+ ..|||||+|.|++.+|.|+|||||+|. |||||+++|+|||.|. |+.|+|++|.+|..
T Consensus 3 ~~IG~RvkI~~---~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~ 72 (505)
T KOG3207|consen 3 MEIGTRVKIGG---EIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKF 72 (505)
T ss_pred eeccceEEEcC---EEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCC
Confidence 57999999986 599999999999999999999999997 9999999999999998 99999999999964
No 8
>KOG4568|consensus
Probab=99.61 E-value=3.2e-16 Score=156.37 Aligned_cols=73 Identities=44% Similarity=0.875 Sum_probs=67.5
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 232 (248)
.....+.||.+|.|.+ ..+|.|||+|+++|.+|.|+||+|++|.|||||+|.|+|||.|.+++|+|+++.+..
T Consensus 13 ~~~~~~~ig~~v~v~~--~~~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~kgif~~~~~~t 85 (664)
T KOG4568|consen 13 DDLGQFIIGRRVWVNN--VELGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYFQCEPKKGIFFRQGRGT 85 (664)
T ss_pred hhhhhhhhcceEEecC--CcceeeeeccCcccccceeeceeeccccCCCCcccchhhhhccccccceeecccccc
Confidence 3445689999999987 489999999999999999999999999999999999999999999999999888765
No 9
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.33 E-value=2.7e-12 Score=92.78 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=60.1
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
|+|.|++.... . ++++++++||.+||++|+..+|+||+.|+|.+. |+. | .|+.+|++|++++|++|||
T Consensus 1 i~i~vk~~g~~--~---~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~---l-~d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 1 IRVRVKHGGES--H---DLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK---GKE---R-DDAETLDMSGVKDGSKVML 68 (71)
T ss_pred CEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC---Ccc---c-CccCcHHHcCCCCCCEEEE
Confidence 57888877443 4 799999999999999999999999999999986 665 3 4678999999999999998
Q ss_pred E
Q psy13905 97 E 97 (248)
Q Consensus 97 v 97 (248)
+
T Consensus 69 ~ 69 (71)
T cd01812 69 L 69 (71)
T ss_pred e
Confidence 6
No 10
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.28 E-value=1.1e-11 Score=89.52 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=60.1
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
++|+|....... . ..+++++.||++||++|+..+|+||+.|+|.+. |+. .+|+.+|++|++++|++||+
T Consensus 1 i~i~vk~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~----L~d~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 1 IEIKVKTLDSQT-H---TFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS---GRV----LKDDETLSEYKVEDGHTIHL 69 (72)
T ss_pred CEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CEE----CCCcCcHHHCCCCCCCEEEE
Confidence 467787654431 3 689999999999999999999999999999985 665 46789999999999999999
Q ss_pred Ee
Q psy13905 97 EG 98 (248)
Q Consensus 97 vD 98 (248)
+-
T Consensus 70 ~~ 71 (72)
T cd01809 70 VK 71 (72)
T ss_pred Ee
Confidence 74
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.25 E-value=2e-11 Score=88.99 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=58.6
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|.|.+...+. . +.+++++.||++||++|+..+|+||+.|+|++. |+. | .|+.+|++|++++|++||++
T Consensus 2 ~i~v~~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~---g~~---L-~d~~tl~~~~i~~g~~i~l~ 70 (76)
T cd01806 2 LIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDDKTAADYKLEGGSVLHLV 70 (76)
T ss_pred EEEEEeCCCCE-E---EEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC---CeE---c-cCCCCHHHcCCCCCCEEEEE
Confidence 46677543331 4 789999999999999999999999999999965 665 4 57789999999999999997
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
-
T Consensus 71 ~ 71 (76)
T cd01806 71 L 71 (76)
T ss_pred E
Confidence 4
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.23 E-value=2.7e-11 Score=89.58 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=58.9
Q ss_pred EEEEEEeC-CCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 17 VELYITNS-KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 17 V~v~ItS~-~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
+.|.|.+- ... . ..+++++.||++||++|+...|+||+.|||++. |+. .+|+.+|++||+.+|++||
T Consensus 2 ~~i~vkt~~Gk~--~---~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~---Gk~----L~D~~tL~~ygi~~~stv~ 69 (73)
T cd01791 2 IEVVCNDRLGKK--V---RVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW---YTI----FKDHISLGDYEIHDGMNLE 69 (73)
T ss_pred EEEEEECCCCCE--E---EEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC---CcC----CCCCCCHHHcCCCCCCEEE
Confidence 57788764 333 3 689999999999999999999999999999976 665 4677899999999999999
Q ss_pred EE
Q psy13905 96 VE 97 (248)
Q Consensus 96 Vv 97 (248)
+-
T Consensus 70 l~ 71 (73)
T cd01791 70 LY 71 (73)
T ss_pred EE
Confidence 84
No 13
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.23 E-value=2.4e-11 Score=90.35 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=51.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC-CCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE-NEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~-dG~~IhVv 97 (248)
...+++++||++||+||+..+||||++||| +. |+. |.+|.++|++|+++ +|.++|+-
T Consensus 16 ~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~---G~~---L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 16 WLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI---GQR---LARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec---CCe---eCCCcCCHHHcCCCCCCCEEEEE
Confidence 689999999999999999999999999999 65 555 56788999999999 88999974
No 14
>PTZ00044 ubiquitin; Provisional
Probab=99.22 E-value=2.5e-11 Score=89.11 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=58.2
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|....-.. . ..++++++||.+||++|+..+|+||++|+|++. |+. | +|..+|++|++++|++||++
T Consensus 2 ~i~vk~~~G~~-~---~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~---L-~d~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 2 QILIKTLTGKK-Q---SFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS---GKQ---M-SDDLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC---CEE---c-cCCCcHHHcCCCCCCEEEEE
Confidence 46666533221 3 689999999999999999999999999999975 666 4 58888999999999999997
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
=
T Consensus 71 ~ 71 (76)
T PTZ00044 71 L 71 (76)
T ss_pred E
Confidence 4
No 15
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.22 E-value=2.6e-11 Score=89.17 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=58.2
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|... .. . ...++++.||++||++|+..+|+|+++|+|++. |+. | .|+.+|++|+++++++||++
T Consensus 2 qi~vk~~-~~--~---~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~---Gk~---L-~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 2 QLFVRAQ-NT--H---TLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA---GVP---L-EDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred EEEEECC-CE--E---EEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC---CeE---C-CCCCCHHHcCCCCCCEEEEE
Confidence 4677763 22 3 689999999999999999999999999999987 776 4 67799999999999999987
No 16
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.21 E-value=1.7e-11 Score=90.77 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=53.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..+++++||++||++|+..+||||++|+|++. |+. .+|+++|++|++++|++|||+=
T Consensus 11 ~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~---G~~----L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 11 NFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE---GIF----IKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CEE----cCCCCcHHHcCCCCCCEEEEEE
Confidence 788999999999999999999999999999987 654 4677999999999999999974
No 17
>KOG4568|consensus
Probab=99.20 E-value=2.7e-12 Score=128.48 Aligned_cols=77 Identities=39% Similarity=0.825 Sum_probs=71.4
Q ss_pred cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCC
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPV 238 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~ 238 (248)
...+.+|+|+.+.++ ..|++||.|.+.|++|-|+|||||+|.|+|||++.|++||.|+|.||.|.+..++.-+.++.
T Consensus 152 ~~~l~v~dr~l~~gq--~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~~~k~ky~~f~~v~kv~~~~~~~ 228 (664)
T KOG4568|consen 152 MLGLRVGDRVLVGGQ--KSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYFQCKPKYGKFAPVQKVFKIEVTI 228 (664)
T ss_pred ccccccccceeecCc--ccchhhhhccccccCCcccchhcccccccccccccccccccCcchhcchhHHHHHhhccccc
Confidence 557899999999874 89999999999999999999999999999999999999999999999999999998776654
No 18
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.17 E-value=7.4e-11 Score=86.67 Aligned_cols=69 Identities=10% Similarity=0.101 Sum_probs=58.3
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|....... . ..+++++.||++||++|+..+|+|+++|+|++. |+. | +|+.+|++|++++|++||++
T Consensus 2 ~i~vk~~~G~~-~---~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~---G~~---L-~d~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 2 FLTVKLLQGRE-C---SLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK---GKA---L-ADDKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC---CEE---C-CCCCCHHHCCCCCCCEEEEE
Confidence 46666543331 3 688999999999999999999999999999987 776 4 57799999999999999987
No 19
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.16 E-value=6.3e-11 Score=89.13 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC--CCCCCeEEEEEeCCCceeeccCCCCcccCCCC--CCCCc
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG--QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYP--VENEM 92 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG--ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~--i~dG~ 92 (248)
|+|.|.++.... -+|+..+++++||++||+||+...+ .||++|||+|. |+. | .|+.+|++|. +.+|.
T Consensus 2 i~l~IK~~~~~~--~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~---GKi---L-kD~~tL~~~~~~~~~~~ 72 (79)
T cd01790 2 VTLLIKSPNQKY--EDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS---GKL---L-PDHLKLRDVLRKQDEYH 72 (79)
T ss_pred eEEEEECCCCCe--EEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc---Cee---c-cchhhHHHHhhcccCCc
Confidence 689999876653 2357788999999999999999885 45799999998 887 4 6889999996 99999
Q ss_pred EEEEE
Q psy13905 93 TLFVE 97 (248)
Q Consensus 93 ~IhVv 97 (248)
+||+|
T Consensus 73 tiHLV 77 (79)
T cd01790 73 MVHLV 77 (79)
T ss_pred eEEEE
Confidence 99997
No 20
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.16 E-value=8.8e-11 Score=86.97 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=60.9
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
|+|.|...... . +.+++++.||++||++|+..||+||++|+|.+..-.|+. ..|+.+|++|++.+|..|+|
T Consensus 1 ~~i~vk~~g~~--~---~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~----l~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 1 VPVIVKWGGQE--Y---SVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKP----AEDDVKISALKLKPNTKIMM 71 (74)
T ss_pred CEEEEEECCEE--E---EEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCc----CCCCcCHHHcCCCCCCEEEE
Confidence 46777776665 3 789999999999999999999999999999972112654 46789999999999999998
Q ss_pred Ee
Q psy13905 97 EG 98 (248)
Q Consensus 97 vD 98 (248)
+-
T Consensus 72 mG 73 (74)
T cd01813 72 MG 73 (74)
T ss_pred Ee
Confidence 74
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.15 E-value=1e-10 Score=85.26 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=58.7
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
|+|+|.+.... . +..+++++||++||++|+..+|+|+++|+|.+. |+. | .|+.+|.+|++++|++||+
T Consensus 1 ~~i~vk~~~g~--~---~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~---Gk~---L-~d~~tL~~~~i~~~stl~l 68 (71)
T cd01808 1 IKVTVKTPKDK--E---EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA---GKI---L-KDTDTLTQHNIKDGLTVHL 68 (71)
T ss_pred CEEEEEcCCCC--E---EEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC---CeE---c-CCCCcHHHcCCCCCCEEEE
Confidence 35777765433 3 689999999999999999999999999999875 776 4 5778999999999999998
Q ss_pred E
Q psy13905 97 E 97 (248)
Q Consensus 97 v 97 (248)
+
T Consensus 69 ~ 69 (71)
T cd01808 69 V 69 (71)
T ss_pred E
Confidence 7
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.14 E-value=1e-10 Score=85.29 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=57.8
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|.+..... . ...+++++||++||++|+..+|+||+.|+|++. |+. | .|+.+|++|++++|++|||+
T Consensus 2 ~i~v~~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~---g~~---L-~d~~~L~~~~i~~~~~i~l~ 70 (76)
T cd01803 2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV 70 (76)
T ss_pred EEEEEcCCCCE-E---EEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 45666543321 3 688999999999999999999999999999974 665 4 67889999999999999997
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
-
T Consensus 71 ~ 71 (76)
T cd01803 71 L 71 (76)
T ss_pred E
Confidence 4
No 23
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.14 E-value=8.6e-11 Score=86.05 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=52.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
...+++++||++||++|+..+|+|+++|+|++. |+. |.++..+|++|++++|+.||+-
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~---Gk~---L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 13 SLDVDPDLELENFKALCEAESGIPASQQQLIYN---GRE---LVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred EEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC---CeE---ccCCcccHHHcCCCCCCEEEEe
Confidence 689999999999999999999999999999986 776 6566689999999999999973
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.11 E-value=1.5e-10 Score=84.88 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
...++++.||++||++|+...|+||++|+|+|. |+. .+|+.+|++|++.+|++|||+
T Consensus 12 ~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~---G~~----L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 12 KLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS---GKL----LTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC---CeE----CCCCCCHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999999986 776 478899999999999999997
No 25
>KOG3556|consensus
Probab=99.10 E-value=1.3e-10 Score=112.17 Aligned_cols=80 Identities=23% Similarity=0.499 Sum_probs=71.1
Q ss_pred CCCccCCEEEEcCC---CCceeEEEEecccCCCCceEEEEEEcCCC-----CCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905 161 KDIEVGKRCKINDS---DVRFGTVMFVGETKFSSGVWVGVKLDEPF-----GKNNGTVKDVKYFECEENYGMFVKPGRLT 232 (248)
Q Consensus 161 ~~~~vG~Rv~v~~~---~~~~G~vryvG~~~~~~g~wvGVelDep~-----GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 232 (248)
..|+||+.|+|... ....|+|||||..|...|+|+|||+++.. +..||++.|.|||+|-.+...||+..++.
T Consensus 234 ~~L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~scs 313 (724)
T KOG3556|consen 234 LNLKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGSCS 313 (724)
T ss_pred ccceecceEEecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCCCC
Confidence 35899999999831 16789999999999999999999999764 78999999999999999999999999999
Q ss_pred cC-CCCCCC
Q psy13905 233 IG-DFPVLD 240 (248)
Q Consensus 233 ~g-~fp~~d 240 (248)
+. .|..++
T Consensus 314 ~d~rfa~l~ 322 (724)
T KOG3556|consen 314 VDPRFARLY 322 (724)
T ss_pred cCcccchhc
Confidence 87 487776
No 26
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.09 E-value=1.8e-10 Score=83.65 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=52.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
...++++.||++||++|+..+|+|+.+|+|++. |+. | +|+.+|++|++++|++|||+
T Consensus 12 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~---G~~---L-~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 12 PVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA---GKE---L-RNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred EEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC---CeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999999976 776 4 67799999999999999997
No 27
>KOG0241|consensus
Probab=99.09 E-value=4.3e-11 Score=121.61 Aligned_cols=70 Identities=30% Similarity=0.377 Sum_probs=63.2
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI 233 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~ 233 (248)
.....+..|.||.+..+ ..++|||+|++.|.+ |||||.|.|||||++.|++||.|.|+||.||+++++..
T Consensus 1626 ~~pew~~~ge~v~~~~h--~t~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyfrc~p~~g~~vr~s~~~~ 1695 (1714)
T KOG0241|consen 1626 ISPEWRGFGERVVTVEH--TTNVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYFRCLPNKGGGVRVSDGLH 1695 (1714)
T ss_pred cCchhhhcCceeEEeec--ccceeeecchhhccC----cccccCCCCCcCccccceeEEeecCCCCCcccchhhcc
Confidence 44556788999999764 688999999999987 99999999999999999999999999999999999864
No 28
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.08 E-value=2.2e-10 Score=82.32 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=54.5
Q ss_pred ceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 33 NLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 33 ~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++..++++.||.+||++|+..+|+||+.|+|.+. |+. | +|+.+|++|++.+|++||++-
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~---G~~---L-~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN---GKE---L-DDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET---TEE---E-STTSBTGGGTTSTTEEEEEEE
T ss_pred EEEEECCCCCHHHhhhhcccccccccccceeeee---eec---c-cCcCcHHHcCCCCCCEEEEEE
Confidence 3789999999999999999999999999999997 776 4 899999999999999999863
No 29
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.08 E-value=2.4e-10 Score=85.41 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=56.7
Q ss_pred EEEEEeCCCCcccccceEE-ecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKK-LKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r-~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
.|+|.+....... ... ++++.||++||++|+..+|+|+++|||++. |+. | +|+.+|++|++++|++||+
T Consensus 2 ~I~vk~~~G~~~~---~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~---Gk~---L-~D~~tL~~y~i~~~~~i~l 71 (78)
T cd01797 2 WIQVRTMDGKETR---TVDSLSRLTKVEELREKIQELFNVEPECQRLFYR---GKQ---M-EDGHTLFDYNVGLNDIIQL 71 (78)
T ss_pred EEEEEcCCCCEEE---EeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC---CEE---C-CCCCCHHHcCCCCCCEEEE
Confidence 4566654332111 453 678999999999999999999999999986 777 4 7889999999999999998
Q ss_pred E
Q psy13905 97 E 97 (248)
Q Consensus 97 v 97 (248)
.
T Consensus 72 ~ 72 (78)
T cd01797 72 L 72 (78)
T ss_pred E
Confidence 7
No 30
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.06 E-value=3.4e-10 Score=83.21 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=57.2
Q ss_pred EEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 19 LYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 19 v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
|+|.+..... . ...++++.||.+||++|+..+|+|+++|+|++. |+. | .|+.+|.+|++++|++||+.-
T Consensus 1 i~vk~~~g~~-~---~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~---G~~---L-~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRS-S---IYEVQLTQTVATLKQQVSQRERVQADQFWLSFE---GRP---M-EDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCE-E---EEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC---CEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence 3555544331 2 688999999999999999999999999999976 776 4 577999999999999999863
No 31
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.05 E-value=5.4e-10 Score=83.31 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=58.8
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
++|+|.+..... . +..++++.||++||++|+..+|+|++.|||++. |+. |. |+ +|++||+.+|++|||
T Consensus 2 m~I~Vk~~~G~~-~---~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~---Gk~---L~-d~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 2 MNLNIHSTTGTR-F---DLSVPPDETVEGLKKRISQRLKVPKERLALLHR---ETR---LS-SG-KLQDLGLGDGSKLTL 69 (78)
T ss_pred eEEEEEECCCCE-E---EEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC---CcC---CC-CC-cHHHcCCCCCCEEEE
Confidence 367777654331 3 789999999999999999999999999999977 665 44 45 899999999999999
Q ss_pred EeC
Q psy13905 97 EGN 99 (248)
Q Consensus 97 vD~ 99 (248)
+-+
T Consensus 70 ~~~ 72 (78)
T cd01804 70 VPT 72 (78)
T ss_pred Eee
Confidence 853
No 32
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.03 E-value=7.6e-10 Score=87.05 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=60.6
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
...|+|....... . ..+++++.||++||+||+...|+|++.|+|++. |+. | .|+.+|++|++++|++||
T Consensus 27 ~M~I~Vk~l~G~~-~---~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dy~I~~~stL~ 95 (103)
T cd01802 27 TMELFIETLTGTC-F---ELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN---NME---L-EDEYCLNDYNISEGCTLK 95 (103)
T ss_pred CEEEEEEcCCCCE-E---EEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEE
Confidence 3567777644331 3 689999999999999999999999999999976 776 4 677999999999999999
Q ss_pred EEe
Q psy13905 96 VEG 98 (248)
Q Consensus 96 VvD 98 (248)
++-
T Consensus 96 l~~ 98 (103)
T cd01802 96 LVL 98 (103)
T ss_pred EEE
Confidence 973
No 33
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.00 E-value=8.2e-10 Score=82.49 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
++|+|.+..... . ...++++.||.+||++|+..+|+|++.|||.+.. .|+. | .|+.+|++|++.+|++|||
T Consensus 3 ~~i~Vk~~~G~~-~---~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~-~G~~---L-~D~~tL~~~gi~~gs~l~l 73 (80)
T cd01792 3 WDLKVKMLGGNE-F---LVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD-SREV---L-QDGVPLVSQGLGPGSTVLL 73 (80)
T ss_pred eEEEEEeCCCCE-E---EEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc-CCCC---C-CCCCCHHHcCCCCCCEEEE
Confidence 578888643331 3 6789999999999999999999999999995321 3665 4 5778999999999999998
Q ss_pred EeC
Q psy13905 97 EGN 99 (248)
Q Consensus 97 vD~ 99 (248)
+-.
T Consensus 74 ~~~ 76 (80)
T cd01792 74 VVQ 76 (80)
T ss_pred EEE
Confidence 754
No 34
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.00 E-value=1.2e-09 Score=80.27 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=58.3
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCC--CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQ--MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGi--pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
.|+|.+..... . ...++++.||.+||++|+..+|+ ||+.|+|++. |+. | +|+.+|++|++++|++|+
T Consensus 2 ~i~vk~~~g~~-~---~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~---G~~---L-~d~~~L~~~~i~~~~~i~ 70 (77)
T cd01805 2 KITFKTLKQQT-F---PIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS---GKI---L-KDDTTLEEYKIDEKDFVV 70 (77)
T ss_pred EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC---CEE---c-cCCCCHHHcCCCCCCEEE
Confidence 46677543331 3 68899999999999999999999 9999999986 776 4 577899999999999999
Q ss_pred EEe
Q psy13905 96 VEG 98 (248)
Q Consensus 96 VvD 98 (248)
|.-
T Consensus 71 ~~~ 73 (77)
T cd01805 71 VMV 73 (77)
T ss_pred EEE
Confidence 864
No 35
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.92 E-value=1.2e-09 Score=81.33 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHH--CCC-CCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 39 LNNTIGELKQKLELLT--GQM-SSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 39 ~~~TI~eLK~KLe~~t--Gip-p~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
-+.||.+||+||+..+ |++ |++|||++. |+. | +|+++|++|+|++|++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~---GKi---L-~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHC---GRK---L-KDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeC---CcC---C-CCCCcHHHcCCCCCCEEEEEe
Confidence 4799999999999996 575 999999988 776 4 688999999999999999984
No 36
>KOG0005|consensus
Probab=98.87 E-value=9.7e-10 Score=78.15 Aligned_cols=57 Identities=9% Similarity=0.128 Sum_probs=53.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
++.++|..+|..+|++++...||||.+|||+|. |+. .+|+.+-.+|++..|+.||++
T Consensus 14 eidIep~DkverIKErvEEkeGIPp~qqrli~~---gkq----m~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYA---GKQ----MNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred EEeeCcchHHHHHHHHhhhhcCCCchhhhhhhc---ccc----ccccccHHHhhhccceeEeeC
Confidence 899999999999999999999999999999998 877 478999999999999999975
No 37
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.87 E-value=4.4e-09 Score=73.51 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=53.1
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
.|+|...... . +.+++++.||++||++|+..+|+|++.|+|.+. |+. | .|+.+|++|++.+|+
T Consensus 2 ~i~vk~~~~~--~---~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~---g~~---L-~d~~tL~~~~i~~~~ 64 (64)
T smart00213 2 ELTVKTLDGT--I---TLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK---GKV---L-EDDRTLADYNIQDGS 64 (64)
T ss_pred EEEEEECCce--E---EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CEE---C-CCCCCHHHcCCcCCC
Confidence 5777765522 4 799999999999999999999999999999986 655 4 467999999999884
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.86 E-value=5.1e-09 Score=81.71 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=55.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNY 100 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~~ 100 (248)
...++++.||++||.+|.+++|+||.+|+|++. |+. |.||+++|++||+.+|++|++.-.+
T Consensus 18 ~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d---G~~---L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 18 ALLVSANQTLKELKIQIMHAFSVAPFDQNLSID---GKI---LSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred eEEeCccccHHHHHHHHHHHhcCCcccceeeec---Cce---eccCCccHHhcCCCCCCEEEEEecC
Confidence 356899999999999999999999999999987 763 7899999999999999999988644
No 39
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.83 E-value=8.3e-09 Score=73.02 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=52.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.++++++.||++||++|+..+|+|++.|+|.+. |+. | +|+.+|++|++.+|+.|+|.+
T Consensus 11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~---g~~---l-~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 11 ELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA---GKI---L-KDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CcC---C-CCcCCHHHCCCCCCCEEEEEE
Confidence 688999999999999999999999999999765 554 4 678899999999999999986
No 40
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.70 E-value=7.7e-08 Score=73.09 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=64.1
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
+....|.|.|.+..... . ..++.++.|+..||++++...|+|+++|+|+|. |+. | .++.|+.+|++++|
T Consensus 7 ~~~~~i~I~v~~~~g~~-~---~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~---G~~---L-~~~~T~~~l~m~d~ 75 (87)
T cd01763 7 EISEHINLKVKGQDGNE-V---FFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD---GQR---I-RDNQTPDDLGMEDG 75 (87)
T ss_pred CCCCeEEEEEECCCCCE-E---EEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC---CeE---C-CCCCCHHHcCCCCC
Confidence 34557889998764332 3 689999999999999999999999999999996 776 3 57889999999999
Q ss_pred cEEEEE
Q psy13905 92 MTLFVE 97 (248)
Q Consensus 92 ~~IhVv 97 (248)
.+|||+
T Consensus 76 d~I~v~ 81 (87)
T cd01763 76 DEIEVM 81 (87)
T ss_pred CEEEEE
Confidence 999997
No 41
>KOG0010|consensus
Probab=98.60 E-value=6.5e-08 Score=93.41 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=66.9
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+.|+|.|++.... . +..++...||.+||++|...+++++++++|+|. |++ | .|+.+|..|||+||.+|
T Consensus 14 ~~irV~Vkt~~dk--~---~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfa---GrI---L-KD~dTL~~~gI~Dg~Tv 81 (493)
T KOG0010|consen 14 SLIRVTVKTPKDK--Y---EVNVASDSSVLQLKELIAQRFGAPPDQLVLIYA---GRI---L-KDDDTLKQYGIQDGHTV 81 (493)
T ss_pred ceeEEEEecCCcc--e---eEecccchHHHHHHHHHHHhcCCChhHeeeeec---Ccc---c-cChhhHHHcCCCCCcEE
Confidence 5689999987765 4 799999999999999999999999999999998 887 4 59999999999999999
Q ss_pred EEEeCC
Q psy13905 95 FVEGNY 100 (248)
Q Consensus 95 hVvD~~ 100 (248)
|+|...
T Consensus 82 HLVik~ 87 (493)
T KOG0010|consen 82 HLVIKS 87 (493)
T ss_pred EEEecc
Confidence 999654
No 42
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.53 E-value=1.3e-07 Score=75.49 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=57.9
Q ss_pred eEEEEEEe-CCCCcccccceEEecCCCCHHHHHHHHH-----HHHCCC--CCCeEEEEEeCCCceeeccCCCCcccCCCC
Q psy13905 16 TVELYITN-SKDKHESCLNLKKLKLNNTIGELKQKLE-----LLTGQM--SSNMTISLYNRNHDLVSHLSDNSMLLGQYP 87 (248)
Q Consensus 16 ~V~v~ItS-~~~s~~s~~~E~r~~~~~TI~eLK~KLe-----~~tGip--p~~mrL~l~~~~g~~i~~L~~d~~~L~~y~ 87 (248)
.|.|.+.- ..+.. . =.+|+++.||++||+||+ ..+|+| +++|+|++. |+. +.|+++|++|+
T Consensus 4 ~~e~kfrl~dg~di-g---p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys---GKi----LeD~~TL~d~~ 72 (113)
T cd01814 4 QIEIKFRLYDGSDI-G---PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA---GKI----LENSKTVGECR 72 (113)
T ss_pred cEEEEEEccCCCcc-C---ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC---Cee----cCCCCcHHHhC
Confidence 45666663 33332 4 488999999999999999 666777 999999998 887 47889999999
Q ss_pred ------CCCCcEEEEEe
Q psy13905 88 ------VENEMTLFVEG 98 (248)
Q Consensus 88 ------i~dG~~IhVvD 98 (248)
+....++||+=
T Consensus 73 ~p~g~~~~~~~TmHvvl 89 (113)
T cd01814 73 SPVGDIAGGVITMHVVV 89 (113)
T ss_pred CcccccCCCceEEEEEe
Confidence 77778999984
No 43
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=4.4e-07 Score=86.24 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=59.0
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC---CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG---QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG---ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+|+|++-... . +++.++++.||.+||+||+..+| +|++.|||+|. |+. | .|+.+|.+|+|++|..|
T Consensus 2 kItVKtl~g~--~--~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~---Gki---L-~Dd~tL~dy~I~e~~~I 70 (378)
T TIGR00601 2 TLTFKTLQQQ--K--FKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS---GKI---L-SDDKTVREYKIKEKDFV 70 (378)
T ss_pred EEEEEeCCCC--E--EEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC---CEE---C-CCCCcHHHcCCCCCCEE
Confidence 5777764333 1 37899999999999999999999 99999999987 876 4 67789999999999988
Q ss_pred EEEeC
Q psy13905 95 FVEGN 99 (248)
Q Consensus 95 hVvD~ 99 (248)
+|.-.
T Consensus 71 vvmv~ 75 (378)
T TIGR00601 71 VVMVS 75 (378)
T ss_pred EEEec
Confidence 87643
No 44
>KOG0004|consensus
Probab=98.32 E-value=4e-07 Score=76.16 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=53.6
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~ 99 (248)
.+...++.||..+|.||+..+||||++|||++. |+. | .|.++|++|+|+.-++||++=.
T Consensus 14 ~~eve~~~ti~~~Kakiq~~egIp~dqqrlifa---g~q---L-edgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 14 TLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred eeeecccccHHHHHHhhhcccCCCchhhhhhhh---hcc---c-ccCCccccccccccceEEEEEE
Confidence 578889999999999999999999999999998 776 4 5679999999999999999853
No 45
>PLN02560 enoyl-CoA reductase
Probab=98.31 E-value=2.2e-06 Score=79.56 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=55.9
Q ss_pred eEEecCCCCHHHHHHHHHHHHCC-CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQ-MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNY 100 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGi-pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~~ 100 (248)
+.+++++.||++||++|+...|+ +++.|||.+.+.+|+......+|+++|.+||+++|++|+|-|.-
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kDLG 84 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKDLG 84 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEeCC
Confidence 57899999999999999999997 89999999975445421112357789999999999999999975
No 46
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.27 E-value=1.9e-06 Score=62.43 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=59.2
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
|+|.|.+.... .. ..++.++.|++.|.+++....|+|+ +.++|.|. |+. | +++.++.+|++++|.+|+
T Consensus 1 I~i~v~~~~~~-~~---~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd---G~~---L-~~~~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 1 ITIKVRSQDGK-EI---KFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD---GKR---L-DPNDTPEDLGIEDGDTID 69 (72)
T ss_dssp EEEEEEETTSE-EE---EEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET---TEE---E--TTSCHHHHT-STTEEEE
T ss_pred CEEEEEeCCCC-EE---EEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC---CEE---c-CCCCCHHHCCCCCCCEEE
Confidence 57888876554 24 7899999999999999999999999 99999986 776 4 677899999999999999
Q ss_pred EE
Q psy13905 96 VE 97 (248)
Q Consensus 96 Vv 97 (248)
|+
T Consensus 70 v~ 71 (72)
T PF11976_consen 70 VI 71 (72)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 47
>KOG0003|consensus
Probab=98.20 E-value=2.4e-07 Score=73.20 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=53.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.....|+.||..||.++....||||++|+|++. |+. .+|..+|+.|+++.-++||.+-
T Consensus 14 ~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~---~k~----LED~~Tla~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 14 TLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ----LEDGRTLADYNIQKESTLHLVL 71 (128)
T ss_pred EEEecccchHHHHHHHhccccCCCHHHHHHHhc---ccc----cccCCcccccCccchhhhhhhH
Confidence 688899999999999999999999999999998 666 4899999999999999999875
No 48
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.14 E-value=6.9e-06 Score=60.83 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=47.9
Q ss_pred cCCCCHHHHHHHHHHHHCC-CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905 38 KLNNTIGELKQKLELLTGQ-MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 38 ~~~~TI~eLK~KLe~~tGi-pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~ 99 (248)
+++.||.+||..|+...+. +++.|||.+. ..|+. | .|+.+|.+||+.+|.+|||-|.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~---L-~d~~tL~~~gv~~g~~lyvKDL 77 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKS---L-KDDDTLVDLGVGAGATLYVRDL 77 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcc---c-CCcccHhhcCCCCCCEEEEeeC
Confidence 7889999999999999875 7999999865 34555 4 4666899999999999999873
No 49
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.70 E-value=0.00011 Score=48.20 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=48.9
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
..+++++.|+.+||.+|...+|++++.|+|.+. |.. ..+...+..|++.+|.+|++..
T Consensus 11 ~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~---~~~----~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 11 ELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN---GKI----LPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC---CeE----CCCCCcHHHcCCCCCCEEEEEe
Confidence 677888999999999999999999999999875 443 2445555799999999999975
No 50
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.57 E-value=7.8e-05 Score=56.14 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=41.7
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+-|.|.|..-. . ...++++.|+++|++||...+++|+..|.|.........+ ..++.++|+++|++.|+.|.+
T Consensus 5 milRvrS~dG~--~---Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l--~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 5 MILRVRSKDGM--K---RIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEEL--KSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp -EEEEE-SSEE--E---EEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCS--SS-TT-CCCCT---TT-EEE-
T ss_pred EEEEEECCCCC--E---EEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCccc--ccCCcCCHHHcCCCCccEEEE
Confidence 45667775543 2 5678999999999999999999999999886542221121 135789999999999998876
Q ss_pred E
Q psy13905 97 E 97 (248)
Q Consensus 97 v 97 (248)
.
T Consensus 78 ~ 78 (80)
T PF11543_consen 78 K 78 (80)
T ss_dssp -
T ss_pred e
Confidence 4
No 51
>KOG0011|consensus
Probab=97.53 E-value=0.00013 Score=67.76 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=56.1
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC--CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG--QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG--ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
+|+|+.-..+ + |++++.|+.||.++|.||+...| .|++.|+|++. |+. ..|+.+++.|++.++.-|.
T Consensus 2 ~lt~KtL~q~-~---F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~---Gki----L~D~~tv~Eykv~E~~fiV 70 (340)
T KOG0011|consen 2 KLTVKTLKQQ-T---FTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYS---GKI----LKDETTVGEYKVKEKKFIV 70 (340)
T ss_pred eeEeeeccCc-e---eEeecCcchhHHHHHHHHHhccCCCCchhhheeeec---cee----ccCCcchhhhccccCceEE
Confidence 4555543333 2 48999999999999999999999 99999999997 876 4899999999999887444
Q ss_pred E
Q psy13905 96 V 96 (248)
Q Consensus 96 V 96 (248)
|
T Consensus 71 v 71 (340)
T KOG0011|consen 71 V 71 (340)
T ss_pred E
Confidence 3
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.53 E-value=0.00051 Score=51.19 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=56.6
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~ 99 (248)
.++++|..+|..||+||..--|++- .|||.|..++|+. .+..+..+|++|||=....|.|.+|
T Consensus 14 ~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~r--qlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 14 ILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGER--QLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred EEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccc--ccccccccHhhhcceeccEEEEEec
Confidence 6899999999999999999999987 9999999988875 2457899999999999999998886
No 53
>KOG4248|consensus
Probab=97.44 E-value=0.00017 Score=75.25 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=59.3
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
+|.|+.-... .. +..+...+||.+||..+...+.|+.+.|||++. |+. ..|++++..|+| ||-+|||+
T Consensus 4 ~v~vktld~r-~~---t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~---grv----l~~~k~vq~~~v-dgk~~hlv 71 (1143)
T KOG4248|consen 4 NVLVKTLDSR-TR---TFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQ---GRV----LQDDKKVQEYNV-DGKVIHLV 71 (1143)
T ss_pred ceeeeecccc-ee---EEEechHHHHHHHHHHHHHhcccccccceeeec---cee----eccchhhhhccC-CCeEEEee
Confidence 4556553332 24 788999999999999999999999999999998 887 479999999999 99999999
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
|
T Consensus 72 e 72 (1143)
T KOG4248|consen 72 E 72 (1143)
T ss_pred c
Confidence 8
No 54
>KOG0001|consensus
Probab=97.38 E-value=0.00084 Score=46.53 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=50.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.....+..+|..+|.||+...|+|+..|+|.+. ++. | .|+.+|.+|+|..+.++|+..
T Consensus 13 ~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~---~~~---l-~d~~~l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 13 TLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFG---GKP---L-EDGRTLADYNIQEGSTLHLVL 70 (75)
T ss_pred EEEecCCCHHHHHHHHHHhhcCCCCeeEEEEEC---CEE---C-cCCCcHHHhCCCCCCEEEEEE
Confidence 477888999999999999999999999998775 444 3 566999999999999999764
No 55
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.28 E-value=0.00062 Score=54.59 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=40.8
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC
Q psy13905 35 KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV 88 (248)
Q Consensus 35 ~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i 88 (248)
..-.++.||.+||.+|+-++-.||++|||+ . ++. +.+|+++|++||+
T Consensus 16 ~dakes~tVlelK~~iegI~k~pp~dQrL~-k--d~q----vLeD~kTL~d~g~ 62 (119)
T cd01788 16 TDAKESTTVYELKRIVEGILKRPPEDQRLY-K--DDQ----LLDDGKTLGDCGF 62 (119)
T ss_pred eecCCcccHHHHHHHHHHHhcCChhHheee-c--Cce----eecccccHHHcCc
Confidence 455688999999999999999999999999 4 333 3589999999999
No 56
>KOG2982|consensus
Probab=97.20 E-value=0.0005 Score=64.15 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=56.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce--eeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL--VSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~--i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
++-+...-||.+++.+|.+.+|+-+..|||.|-+.+|+. ...+ +.+++|.+|+|++|..+.|.
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~-~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSS-DYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCcccc-CCCCcceEEeccCCCEeeee
Confidence 688999999999999999999999999999999999986 4444 67899999999999988775
No 57
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.13 E-value=0.001 Score=53.18 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=44.2
Q ss_pred eEEecCCCCHHHHHHHHHHH-------HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc------EEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELL-------TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM------TLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~-------tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~------~IhVvD 98 (248)
+.+|++++||.+||++|... .-..++++||++. |++ | +|+.+|+++.+.-|. ++||+=
T Consensus 17 ~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~---Gri---L-~d~~tL~~~~~~~~~~~~~~~vmHlvv 87 (111)
T PF13881_consen 17 PFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA---GRI---L-EDNKTLSDCRLPSGETPGGPTVMHLVV 87 (111)
T ss_dssp EEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET---TEE---E--SSSBTGGGT--TTSETT--EEEEEEE
T ss_pred ccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC---Cee---c-CCcCcHHHhCCCCCCCCCCCEEEEEEe
Confidence 78999999999999999843 3456788999987 886 4 699999999877654 788885
No 58
>KOG1872|consensus
Probab=96.68 E-value=0.0075 Score=58.62 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=59.7
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
..|.|.....-+ . -..++.+.|..-||++|+..||++|+.|++.++ |.. ..|+-.++..+|++|++||+
T Consensus 4 ~~v~VKW~gk~y-~---v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vK---Gg~----a~dd~~~~al~iKpn~~lmM 72 (473)
T KOG1872|consen 4 DTVIVKWGGKKY-P---VETLSTDETPSVLKAQLFALTGVPPERQKVMVK---GGL----AKDDVDWGALQIKPNETLMM 72 (473)
T ss_pred ceEeeeecCccc-c---ceeccCCCchHHHHHHHHHhcCCCccceeEEEe---ccc----ccccccccccccCCCCEEEe
Confidence 456777666553 2 345899999999999999999999999999988 655 35555789999999999999
Q ss_pred EeCC
Q psy13905 97 EGNY 100 (248)
Q Consensus 97 vD~~ 100 (248)
.-+.
T Consensus 73 mGt~ 76 (473)
T KOG1872|consen 73 MGTA 76 (473)
T ss_pred eccc
Confidence 9765
No 59
>KOG4495|consensus
Probab=96.48 E-value=0.004 Score=48.60 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=45.3
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCC-------CCCCcEEEE
Q psy13905 35 KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYP-------VENEMTLFV 96 (248)
Q Consensus 35 ~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~-------i~dG~~IhV 96 (248)
..-.++-||-+||.||+-++--|++.|||+.-+.+ .|.+|.++|++.| ++.-.++-+
T Consensus 16 ~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e-----qlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 16 TDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE-----QLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred eecCccccHHHHHHHHHHHHhCCCcchheeecCHH-----HHhhccchhhhccccccccccCCCceeee
Confidence 44567899999999999999999999999987443 2568999999994 444455555
No 60
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.68 E-value=0.013 Score=43.37 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=47.1
Q ss_pred eEEEEEEeCC-CCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCe----EEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905 16 TVELYITNSK-DKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNM----TISLYNRNHDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 16 ~V~v~ItS~~-~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~m----rL~l~~~~g~~i~~L~~d~~~L~~y~i~d 90 (248)
.++|.|.... .+ . ...+|.+.||.+|..-|-...+.+.... ...+....|.. .+++.+|.++++.|
T Consensus 2 ~~rVtv~~~~~~~--~---Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~----L~~~~tL~~~gV~d 72 (79)
T PF08817_consen 2 LCRVTVDAGNGRQ--V---DLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRP----LDPDQTLADAGVRD 72 (79)
T ss_dssp EEEEEEE-TT--E--E---EEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEE----EETTSBCGGGT--T
T ss_pred EEEEEEEcCCCcE--E---EEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcc----cCCcCcHhHcCCCC
Confidence 4677777654 43 4 8999999999999999999988754432 24554344544 37899999999999
Q ss_pred CcEEEE
Q psy13905 91 EMTLFV 96 (248)
Q Consensus 91 G~~IhV 96 (248)
|..+++
T Consensus 73 Gd~L~L 78 (79)
T PF08817_consen 73 GDVLVL 78 (79)
T ss_dssp T-EEEE
T ss_pred CCEEEe
Confidence 999886
No 61
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=95.49 E-value=0.093 Score=40.37 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=48.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.+.|+...||+.+...+...+.| +...||.-+...+.. ..|.+...+|.+-++.+|..|.+.-
T Consensus 17 t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 17 TKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEEE
T ss_pred HhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEEe
Confidence 58999999999999999999999 778999998765554 6677888999999999999887764
No 62
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.19 E-value=0.049 Score=41.18 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=40.4
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCc
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD 71 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~ 71 (248)
+|+|+.+. + . -+|++++++..+|.+||....++|++.++|+|++.+..
T Consensus 4 vvKV~f~~--t---I---aIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~ 51 (80)
T cd06406 4 VVKVHFKY--T---V---AIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASG 51 (80)
T ss_pred EEEEEEEE--E---E---EEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCC
Confidence 46666664 2 3 69999999999999999999999999999999976543
No 63
>PRK10708 hypothetical protein; Provisional
Probab=95.14 E-value=0.1 Score=36.89 Aligned_cols=57 Identities=30% Similarity=0.541 Sum_probs=45.3
Q ss_pred CccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcC-CCCCCceeEcCeEee-ecCCCceeeEcCC
Q psy13905 163 IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDE-PFGKNNGTVKDVKYF-ECEENYGMFVKPG 229 (248)
Q Consensus 163 ~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDe-p~GkndGs~~G~rYF-~c~~~~G~Fv~~~ 229 (248)
++|.|||.|. +.+.|.|+|.-+ =+|..|++.=|.|++ | .|+.|| +....-|+||.|.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~iLav--E~F~EG~MyLvaL~dYP--------~GiWFFNE~~~~~G~FVep~ 61 (62)
T PRK10708 1 MKVNDRVTVKTDGGPRRPGVVLAV--EEFSEGTMYLVSLEDYP--------LGIWFFNEAGHQDGIFVEKA 61 (62)
T ss_pred CccccEEEEecCCCccccceEEEE--eeccCcEEEEEEcCcCC--------CceEEEeccCCCCceEeccc
Confidence 3689999997 556788999988 457889999999986 4 367788 4567889999874
No 64
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=95.09 E-value=0.097 Score=37.04 Aligned_cols=57 Identities=28% Similarity=0.539 Sum_probs=45.3
Q ss_pred CccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcC-CCCCCceeEcCeEee-ecCCCceeeEcCC
Q psy13905 163 IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDE-PFGKNNGTVKDVKYF-ECEENYGMFVKPG 229 (248)
Q Consensus 163 ~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDe-p~GkndGs~~G~rYF-~c~~~~G~Fv~~~ 229 (248)
++|.|||.|. +.+.|.|+|.-+ =+|..|++.=|.|++ | .|+.|| +....-|+||.|.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~ilav--E~F~EG~MYLvaL~dYP--------~GiWFFNE~~~~dG~FVep~ 61 (62)
T PF10781_consen 1 MKVNDRVTVKTDGGPRREGVILAV--EPFNEGTMYLVALEDYP--------AGIWFFNEKDSPDGTFVEPR 61 (62)
T ss_pred CccccEEEEecCCcccccceEEEE--eeccCcEEEEEEcCcCC--------cceEEEecCCCCCcEEeeec
Confidence 3689999997 456788999988 456889999999986 4 367788 4568889999875
No 65
>PTZ00243 ABC transporter; Provisional
Probab=94.79 E-value=0.044 Score=60.89 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=50.2
Q ss_pred hhhhcCCCccCCEEEEcCCCCceeEEEEecccCC--CCceEEEEEEcCCC--------------CCCceeEcCeEeeec
Q psy13905 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKF--SSGVWVGVKLDEPF--------------GKNNGTVKDVKYFEC 218 (248)
Q Consensus 156 ~~~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~--~~g~wvGVelDep~--------------GkndGs~~G~rYF~c 218 (248)
....+=+-.||.||-+...+.-+|++||||.+.. .|+.++||||.-|- +-|+|.+.|.+.|.-
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1560)
T PTZ00243 118 YERNAWNCMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTP 196 (1560)
T ss_pred HhhcccccccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCc
Confidence 3344556789999999855578999999999965 57899999999651 248999999999964
No 66
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=94.57 E-value=0.13 Score=37.67 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=36.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~ 74 (248)
..++++++|..+|+.+|...++.+....+|.|.+.+|..+.
T Consensus 14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~ 54 (81)
T smart00666 14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVS 54 (81)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEE
Confidence 46788999999999999999999999999999998888743
No 67
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=94.44 E-value=0.6 Score=34.27 Aligned_cols=77 Identities=16% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCC-eEEEEEeCCCceeeccCCC-CcccCCCCCCC
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSN-MTISLYNRNHDLVSHLSDN-SMLLGQYPVEN 90 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~-mrL~l~~~~g~~i~~L~~d-~~~L~~y~i~d 90 (248)
..+.++|.|..+.-+. . .++|.++.||.+|.+-|......+... -+|.-.-+ .+. +..+ +.+|.+.++.+
T Consensus 3 ~~~~~~I~vRlpdG~~-l---~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~P-r~~---l~~~~~~tl~e~~l~p 74 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSR-L---QRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFP-RRE---LTDEDSKTLEEAGLLP 74 (82)
T ss_dssp TSSEEEEEEEETTSTE-E---EEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSS-TEE---CCSTTTSBTCCCTTSS
T ss_pred CCCEEEEEEECCCCCE-E---EEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCC-CcC---CCccccccHHHhcCCC
Confidence 4567889999765442 4 899999999999999999998888865 56643222 222 2233 59999999999
Q ss_pred CcEEEEE
Q psy13905 91 EMTLFVE 97 (248)
Q Consensus 91 G~~IhVv 97 (248)
+..|+|.
T Consensus 75 ~~~l~v~ 81 (82)
T PF00789_consen 75 SATLIVE 81 (82)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 9999985
No 68
>KOG3493|consensus
Probab=93.62 E-value=0.022 Score=41.47 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=45.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
..+-.++.||+++|.-|...||+.|+...|.= . ..+-.|.-+|++|-+++|+.+.+
T Consensus 15 RvKCn~dDtiGD~KKliaaQtGT~~~kivl~k------~-~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 15 RVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKK------W-YTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred EEEeCCcccccCHHHHHHHhhCCChhHhHHHh------h-hhhhhcccceeeEEeccCccEEE
Confidence 35567899999999999999999999887662 2 22457899999999999997654
No 69
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.43 E-value=0.37 Score=36.38 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=41.7
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCcee
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLV 73 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i 73 (248)
+|.++.+..- . ..++++++++.+|+++|..+.++.. +...|.|.|.+|..+
T Consensus 2 ~vK~~~~~d~--~---r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v 53 (82)
T cd06407 2 RVKATYGEEK--I---RFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWV 53 (82)
T ss_pred EEEEEeCCeE--E---EEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeE
Confidence 4555554443 3 5789999999999999999999987 789999999888873
No 70
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=93.00 E-value=0.34 Score=35.47 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=52.0
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCC---cccCCCCC--CCC
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNS---MLLGQYPV--ENE 91 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~---~~L~~y~i--~dG 91 (248)
|.|.++.....+. ...++.+.|..+|+.+|...+|.++...+|.|.+.+|..+. +..|. ..+..+.- ..-
T Consensus 2 ~~vK~~~~~~~~~----~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~-i~sd~Dl~~a~~~~~~~~~~~ 76 (84)
T PF00564_consen 2 VRVKVRYGGDIRR----IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVT-ISSDEDLQEAIEQAKESGSKT 76 (84)
T ss_dssp EEEEEEETTEEEE----EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEE-ESSHHHHHHHHHHHHHCTTSC
T ss_pred EEEEEEECCeeEE----EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEE-eCCHHHHHHHHHHHHhcCCCc
Confidence 4556665443311 25688899999999999999999999999999999998744 33332 12222211 124
Q ss_pred cEEEEEe
Q psy13905 92 MTLFVEG 98 (248)
Q Consensus 92 ~~IhVvD 98 (248)
.+|||.+
T Consensus 77 lrl~v~~ 83 (84)
T PF00564_consen 77 LRLFVQD 83 (84)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 5888876
No 71
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=92.09 E-value=0.69 Score=33.53 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=35.7
Q ss_pred eEEec-CCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905 34 LKKLK-LNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 34 E~r~~-~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~ 74 (248)
..+++ .+.|..+|+++|...++.+...-+|.+.+.+|..+.
T Consensus 13 ~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~ 54 (81)
T cd05992 13 RFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVT 54 (81)
T ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEE
Confidence 56777 899999999999999999987889999998887643
No 72
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.19 E-value=1.4 Score=37.55 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=48.5
Q ss_pred EEEEEEeCCC-CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC----
Q psy13905 17 VELYITNSKD-KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE---- 91 (248)
Q Consensus 17 V~v~ItS~~~-s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG---- 91 (248)
|+|+|++-.. .+ ...+...++.+.||.+|+.+|....++++..+ ++|+...+..+. ..++..+..+...+.
T Consensus 1 i~Vlvss~~g~~l-p~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~-~~L~~~~n~~l~--~~~~~~~s~l~~~~~~~~~ 76 (162)
T PF13019_consen 1 INVLVSSFDGLTL-PPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQ-LYLTTNSNGQLS--PSSDIPLSSLLSSSQDSDF 76 (162)
T ss_pred CeEEEecCCCCCC-CCeEEeeCCCCCcHHHHHHHHHhhcCCCccce-eEEEEeCCCeeC--CCccccHHhhccCcCCCCc
Confidence 5788886322 11 01136889999999999999999999999887 555543343321 234555555543332
Q ss_pred cEEEEE
Q psy13905 92 MTLFVE 97 (248)
Q Consensus 92 ~~IhVv 97 (248)
.+|+|.
T Consensus 77 ~~l~l~ 82 (162)
T PF13019_consen 77 ITLRLS 82 (162)
T ss_pred eEEEEE
Confidence 255555
No 73
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.48 E-value=2 Score=32.50 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=56.7
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeecc----CCCCcccCCCCCCC
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL----SDNSMLLGQYPVEN 90 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L----~~d~~~L~~y~i~d 90 (248)
..++|.|.-+.-++ . ++||..+.||..|..=++.. |-.|..-+|....+. +.+..+ .+.+.+|.+-|+.+
T Consensus 3 ~~~~I~iRlp~G~R-l---~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPr-r~~~~~~~~~~~~~~TL~eaGL~~ 76 (85)
T cd01774 3 DTVKIVFKLPNGTR-V---ERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPR-RVLPCLPSEGDPPPPTLLEAGLSN 76 (85)
T ss_pred ceEEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCC-ccccccccccCcCCCCHHHcCCCC
Confidence 46788888544332 4 89999999999999999654 556667777665443 233322 24578999999999
Q ss_pred CcEEEEEeC
Q psy13905 91 EMTLFVEGN 99 (248)
Q Consensus 91 G~~IhVvD~ 99 (248)
...|.|.|.
T Consensus 77 s~~L~V~d~ 85 (85)
T cd01774 77 SEVLFVQDL 85 (85)
T ss_pred ccEEEEecC
Confidence 999998873
No 74
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=89.19 E-value=1.6 Score=33.66 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCceee
Q psy13905 39 LNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLVS 74 (248)
Q Consensus 39 ~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i~ 74 (248)
++++..+|++||...+.+++ ....|.|.|.+|..+.
T Consensus 23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~ 59 (91)
T cd06398 23 LDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT 59 (91)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEE
Confidence 46999999999999999998 7889999999998744
No 75
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=87.96 E-value=1.9 Score=32.98 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~ 72 (248)
|+|.|+..... . -.+++++++..+|.+||..++|+. +..+|.+.|. |..
T Consensus 3 ikVKv~~~~Dv--~---~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE-GD~ 51 (86)
T cd06408 3 IRVKVHAQDDT--R---YIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD-GDM 51 (86)
T ss_pred EEEEEEecCcE--E---EEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC-CCC
Confidence 56666654443 2 489999999999999999999995 6778888877 665
No 76
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=87.90 E-value=3.8 Score=30.05 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=52.0
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCC--CcccCCCCCCCCc
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDN--SMLLGQYPVENEM 92 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d--~~~L~~y~i~dG~ 92 (248)
+..+|.|.-+.-++ . +++|+.+.||.+|.+-+....+.....-+|.-..+ .+. +.++ +.+|.+.++.++.
T Consensus 3 ~~~~I~iRlPdG~r-i---~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~P-rk~---l~~~d~~~tL~e~gL~p~~ 74 (80)
T smart00166 3 DQCRLQIRLPDGSR-L---VRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFP-RRT---FTKDDYSKTLLELALLPSS 74 (80)
T ss_pred CeEEEEEEcCCCCE-E---EEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCC-CcC---CccccccCCHHHCCCCCce
Confidence 46778888554442 4 79999999999999999766666555555443222 122 3332 6899999999988
Q ss_pred EEEEE
Q psy13905 93 TLFVE 97 (248)
Q Consensus 93 ~IhVv 97 (248)
.|.|.
T Consensus 75 ~l~v~ 79 (80)
T smart00166 75 TLVLE 79 (80)
T ss_pred EEEEe
Confidence 88764
No 77
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=87.85 E-value=2.6 Score=31.94 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCcccccceEEecC--CCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905 17 VELYITNSKDKHESCLNLKKLKL--NNTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~--~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~ 72 (248)
|+|.++..... . -.+|++ ++|+.+|++.+..+++++ .-.|.+-|.+|..
T Consensus 1 V~vKaty~~d~--~---rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~ 51 (81)
T cd06396 1 VNLKVTYNGES--Q---SFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEE 51 (81)
T ss_pred CEEEEEECCeE--E---EEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCE
Confidence 46677766554 2 467888 889999999999999999 7777788888776
No 78
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.28 E-value=5.5 Score=29.73 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+++.++|.|.-+.-++ . ++||..+.|++.|-.=+... |.++..-+|.-.-+. +.+.. .+.+.+|.+.|+.+..
T Consensus 1 ~~~~~~i~iRlP~G~r-~---~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPR-k~~~~-~d~~~TL~e~gL~p~~ 73 (80)
T cd01771 1 GEPISKLRVRTPSGDF-L---ERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPR-RDLTQ-LDPNFTLLELKLYPQE 73 (80)
T ss_pred CCCeEEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCC-CCCcC-CCCCCcHHHcCCCCCc
Confidence 4678899999655442 4 79999999999999999875 778777776643332 22222 2446799999999998
Q ss_pred EEEEE
Q psy13905 93 TLFVE 97 (248)
Q Consensus 93 ~IhVv 97 (248)
+|.|.
T Consensus 74 ~L~Ve 78 (80)
T cd01771 74 TLILE 78 (80)
T ss_pred EEEEE
Confidence 88875
No 79
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.28 E-value=5.9 Score=29.42 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=50.7
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
++..+|.|.-+.-++ . .++|+.+.||++|.+=+....+.+. ..-.|....+ .+. +.+++.+|.+.|+.+.+
T Consensus 2 ~p~t~iqiRlpdG~r-~---~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP-~k~---l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 2 EPTTSIQIRLADGKR-L---VQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFP-VKE---LSDESLTLKEANLLNAV 73 (79)
T ss_pred CCeeEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCC-Ccc---cCCCCCcHHHCCCcCcE
Confidence 467789999655443 4 7999999999999999998775432 2334433222 232 45668999999999765
Q ss_pred EE
Q psy13905 93 TL 94 (248)
Q Consensus 93 ~I 94 (248)
.+
T Consensus 74 v~ 75 (79)
T cd01770 74 IV 75 (79)
T ss_pred EE
Confidence 44
No 80
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=85.02 E-value=3.2 Score=31.46 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=34.5
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905 35 KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 35 ~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~ 74 (248)
..|+...|+..|++||+..+.+|+..--|.|.|.+|..|.
T Consensus 14 f~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~IT 53 (82)
T cd06397 14 IVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEIT 53 (82)
T ss_pred EecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEE
Confidence 4467789999999999999999998899999888877643
No 81
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.86 E-value=7.8 Score=29.32 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=60.7
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
|+++.-+|.|.-+.-++ . +++|..+.|+..|-.=+.. -|.++..-+|.=..+. +.+... +-+.+|.+.|+.+.
T Consensus 1 ~~~~~t~i~vRlP~G~r-~---~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPR-r~~~~~-d~~~TL~e~GL~P~ 73 (82)
T cd01773 1 DNGPKARLMLRYPDGKR-E---QIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPR-RKLSHL-DYDITLQEAGLCPQ 73 (82)
T ss_pred CCCCeeEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCC-cccCCc-ccCCCHHHcCCCCC
Confidence 46777889999654442 4 8999999999999988877 4778888887754443 333332 34589999999999
Q ss_pred cEEEEEeC
Q psy13905 92 MTLFVEGN 99 (248)
Q Consensus 92 ~~IhVvD~ 99 (248)
.+|.|.|-
T Consensus 74 ~~LfVq~r 81 (82)
T cd01773 74 ETVFVQER 81 (82)
T ss_pred cEEEEecC
Confidence 99999874
No 82
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=84.09 E-value=3.2 Score=32.30 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=33.9
Q ss_pred EEEEEEeCCCCcccccceEEec--CCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905 17 VELYITNSKDKHESCLNLKKLK--LNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~--~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~ 72 (248)
+.|.++++... ....|+ ...|+.+||..|....+-.++..+|-|-- .|+.
T Consensus 3 l~IRFs~sipD-----l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~-~Gr~ 54 (97)
T PF10302_consen 3 LTIRFSDSIPD-----LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIY-AGRL 54 (97)
T ss_pred EEEEECCCCCC-----ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeee-cCcc
Confidence 45556653333 366776 88999999999999996666665555432 2765
No 83
>KOG0006|consensus
Probab=83.98 E-value=2.7 Score=39.63 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=43.9
Q ss_pred ceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 33 NLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 33 ~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
+...++.+..|.+||+-++..+|+||.+.+++|. |+. | .++.++....+.--+.+|++
T Consensus 16 l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFa---GKe---L-s~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 16 LPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFA---GKE---L-SNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred eeEEEecCCCHHHHHHHHHHhhCCChhheEEEEe---ccc---c-ccCceeecccccccchhhhh
Confidence 3688889999999999999999999999999998 776 3 45555654433333445554
No 84
>KOG1639|consensus
Probab=82.71 E-value=2.9 Score=38.20 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=48.7
Q ss_pred eEEecCCCCHHHHHHHH-HHHHCCCCCCeEEEEEeC-CCceeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905 34 LKKLKLNNTIGELKQKL-ELLTGQMSSNMTISLYNR-NHDLVSHLSDNSMLLGQYPVENEMTLFVEGNY 100 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KL-e~~tGipp~~mrL~l~~~-~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~~ 100 (248)
++..+...||.+|+.++ ..-..+.|..+|+.|+-. .|+. + -++.+|.+|+..+|.+|.|-|.-
T Consensus 16 ~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkp---l-~~~s~l~e~~~~s~~~i~vKDLG 80 (297)
T KOG1639|consen 16 EKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKP---L-IDNSKLQEYGDGSGATIYVKDLG 80 (297)
T ss_pred eecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcc---c-cchhHHHHhccCCCCEEEEeccC
Confidence 57788899999999555 555788887888887643 3444 3 35666999999999999999974
No 85
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=79.91 E-value=12 Score=27.51 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=49.8
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
..+|.|.-+.-++ . .++|+.+.||.+|.+-+....+.+ ..-.|.-..+ .+. ....+.+.+|.+.|+.+...|+
T Consensus 4 ~~~i~iRlp~G~~-~---~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fP-rk~-~~~~d~~~TL~elgL~Psa~L~ 76 (79)
T cd01772 4 ETRIQIRLLDGTT-L---KQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFP-RKV-FTEDDMEKPLQELGLVPSAVLI 76 (79)
T ss_pred EEEEEEECCCCCE-E---EEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCC-CeE-CCcccccCCHHHCCCCCceEEE
Confidence 4577777444332 4 799999999999999999776544 2334432211 122 1112346899999999999998
Q ss_pred EE
Q psy13905 96 VE 97 (248)
Q Consensus 96 Vv 97 (248)
|.
T Consensus 77 v~ 78 (79)
T cd01772 77 VT 78 (79)
T ss_pred Ee
Confidence 85
No 86
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=79.31 E-value=13 Score=26.97 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=45.9
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccC--CCCcccCCCCCCCCcE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLS--DNSMLLGQYPVENEMT 93 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~--~d~~~L~~y~i~dG~~ 93 (248)
..+|.|.-+.-++ . +++|+.+.||.+|.+=+.....- +..-.|.-.-+ .+. +. +.+.+|.+.|+.++..
T Consensus 2 ~t~i~iRlpdG~~-~---~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~P-r~~---~~~~~~~~TL~e~gL~~s~~ 72 (77)
T cd01767 2 TTKIQIRLPDGKR-L---EQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFP-RRV---LTDLDYELTLQEAGLVNEVV 72 (77)
T ss_pred cEEEEEEcCCCCE-E---EEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCC-Ccc---CCCCCccCcHHHcCCccceE
Confidence 4677788554432 4 79999999999999999876543 33344443222 122 33 3789999999995443
Q ss_pred E
Q psy13905 94 L 94 (248)
Q Consensus 94 I 94 (248)
+
T Consensus 73 ~ 73 (77)
T cd01767 73 F 73 (77)
T ss_pred E
Confidence 3
No 87
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=76.74 E-value=12 Score=28.47 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=44.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeCCCceeeccCCCC-----cccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNRNHDLVSHLSDNS-----MLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~~g~~i~~L~~d~-----~~L~~y~i~dG~~IhVvD 98 (248)
-..++++.|..+|++|+..+...+.. .-++...|.+|..+. +..+. -.|..-+=..+-.|||..
T Consensus 13 it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~t-iSS~~EL~EA~rl~~~n~~~~l~ihvfp 82 (83)
T cd06404 13 ITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCT-ISSQMELEEAFRLYELNKDSELNIHVFP 82 (83)
T ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCcee-ecCHHHHHHHHHHHHhcCcccEEEEecC
Confidence 46789999999999999999999874 668888888888632 22211 123333344566888853
No 88
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=73.00 E-value=5.9 Score=29.82 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=34.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCc
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD 71 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~ 71 (248)
-.++++..+.++|.++|......+|+..+|.|+..++.
T Consensus 10 ai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~ 47 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED 47 (78)
T ss_pred EEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC
Confidence 57889999999999999999999999999999976554
No 89
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=72.63 E-value=16 Score=36.85 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=50.7
Q ss_pred eEEEEEEeC-CCCcccccceEEecCCCCHHHHHHHHHHHH--CC------CCCCeEEEEEeCCCceeeccCCCC------
Q psy13905 16 TVELYITNS-KDKHESCLNLKKLKLNNTIGELKQKLELLT--GQ------MSSNMTISLYNRNHDLVSHLSDNS------ 80 (248)
Q Consensus 16 ~V~v~ItS~-~~s~~s~~~E~r~~~~~TI~eLK~KLe~~t--Gi------pp~~mrL~l~~~~g~~i~~L~~d~------ 80 (248)
.+.|.|... ...-.. ..++=.-.||.|+|+||-... ++ .+..+.|..+.+.+..+ .|.+.+
T Consensus 189 ~ltl~v~~~~~~~~~i---~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~-iL~D~D~ts~~~ 264 (539)
T PF08337_consen 189 TLTLNVVPQEEGSEEI---PVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRL-ILQDEDSTSKVE 264 (539)
T ss_dssp EEEEEEECTTTSSTCE---EEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEE-EESSSSTTSEEE
T ss_pred EEEEEEEecCCCCceE---EEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcc-cccCCCCCcccC
Confidence 456665532 222112 677878899999999997652 33 35778998887654331 122221
Q ss_pred ------cccCCCCCCCCcEEEEEeC
Q psy13905 81 ------MLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 81 ------~~L~~y~i~dG~~IhVvD~ 99 (248)
.||++|+|.+|++|-++..
T Consensus 265 ~~wkrLNTL~HY~V~dga~vaLv~k 289 (539)
T PF08337_consen 265 GGWKRLNTLAHYKVPDGATVALVPK 289 (539)
T ss_dssp TTEEE--BHHHHT--TTEEEEEEES
T ss_pred CCceEeccHhhcCCCCCceEEEeec
Confidence 3889999999999999975
No 90
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=71.92 E-value=13 Score=28.94 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=30.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRN 69 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~ 69 (248)
-..++.++|..+|+.||..+++++.. +.|.+.-+.
T Consensus 26 ~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~ 60 (97)
T cd06410 26 IVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLPD 60 (97)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCC
Confidence 36789999999999999999999987 888776443
No 91
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=70.30 E-value=17 Score=25.30 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=33.7
Q ss_pred CccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCce
Q psy13905 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNG 208 (248)
Q Consensus 163 ~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndG 208 (248)
+++||.|++.++ .-+=||.++|+..+.++.|+=-.|-+..|...+
T Consensus 1 f~~GDvV~LKSG-Gp~MTV~~v~~~~~~~~~~v~C~WFd~~~~~~~ 45 (53)
T PF09926_consen 1 FKIGDVVQLKSG-GPRMTVTEVGPNAGASGGWVECQWFDGHGEQRE 45 (53)
T ss_pred CCCCCEEEEccC-CCCeEEEEccccccCCCCeEEEEeCCCCCcccc
Confidence 578999999854 457799999999777777777777665554433
No 92
>KOG4250|consensus
Probab=68.81 E-value=7.6 Score=40.16 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=39.1
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLY 66 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~ 66 (248)
+|+|+-.+...+ . +.-++++.|+..|+++|+.-||+|...|.|.+.
T Consensus 315 vvhiFs~~~~~~--~---~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e 360 (732)
T KOG4250|consen 315 VVHIFSMVQATS--H---EYYVHADNTLHSLIERISKQTGIPEGKQELLFE 360 (732)
T ss_pred eeEEEeeccceE--E---EEecChhhhHHHHHHHHHHhhCCCCccceeeee
Confidence 455555555555 5 889999999999999999999999999999987
No 93
>KOG0013|consensus
Probab=68.13 E-value=9.4 Score=34.04 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=47.5
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC--cEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE--MTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG--~~IhVvD 98 (248)
....+...|+.|+|.+|+...|+.|-.|++.+. |.+ .-+...|...+++.| ..+.|+=
T Consensus 160 ~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~S---g~~----l~dkt~LeEc~iekg~rYvlqviV 219 (231)
T KOG0013|consen 160 WLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFS---GGV----LVDKTDLEECKIEKGQRYVLQVIV 219 (231)
T ss_pred eecccCcCcHHHHHHHHHHhhccchhhheeecc---CCc----eeccccceeeeecCCCEEEEEEEe
Confidence 345566789999999999999999999998876 665 357788999999999 5666654
No 94
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=68.10 E-value=42 Score=24.04 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=34.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++.++.+.|+.+|-+.| |+++....+.+. |..+ -.++.+++|.+|-++-
T Consensus 17 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN---g~iv---------~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 17 EIEWRKGMKVADILRAV----GFNTESAIAKVN---GKVA---------LEDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCccEEEEEC---CEEC---------CCCcCcCCCCEEEEEc
Confidence 57778899999999887 777755444443 4442 1367788999888764
No 95
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=67.84 E-value=35 Score=33.47 Aligned_cols=75 Identities=13% Similarity=0.049 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCC----CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQ----MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGi----pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
..+|.|...... . +.-+|.+.++.+|=.-|-.+.|- +.....-.|...+|.. .+.+++|.+-++.||
T Consensus 2 l~RVtV~~~~~~--~---DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~p----L~~~~sL~~~gV~DG 72 (452)
T TIGR02958 2 LCRVTVLAGRRA--V---DVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSP----LDPDASLAEAGVRDG 72 (452)
T ss_pred eEEEEEeeCCee--e---eeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCC----CCCCCCHHHcCCCCC
Confidence 457888877655 5 88899999999999999999986 4456677777777766 378999999999999
Q ss_pred cEEEEEeC
Q psy13905 92 MTLFVEGN 99 (248)
Q Consensus 92 ~~IhVvD~ 99 (248)
..+++.-.
T Consensus 73 ~~L~L~p~ 80 (452)
T TIGR02958 73 ELLVLVPA 80 (452)
T ss_pred CeEEEeeC
Confidence 99999863
No 96
>KOG1769|consensus
Probab=66.86 E-value=46 Score=26.19 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=59.1
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...|+|.|.....+. . ..++..+.++.-|..--....|++.++-|..|. |+. + .+..+-++.+.++|..
T Consensus 18 ~~hi~LKV~gqd~~~-~---~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFd---G~r---I-~~~~TP~~L~mEd~D~ 86 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSV-V---VFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFD---GQR---I-RETHTPADLEMEDGDE 86 (99)
T ss_pred cceEEEEEecCCCCE-E---EEEeecCChHHHHHHHHHHHcCCccceEEEEEC---CcC---c-CCCCChhhhCCcCCcE
Confidence 357888888743331 2 578899999999999999999999999998775 766 2 4566888999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|-|.-
T Consensus 87 Iev~~ 91 (99)
T KOG1769|consen 87 IEVVQ 91 (99)
T ss_pred EEEEe
Confidence 98874
No 97
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=66.79 E-value=14 Score=30.04 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=39.4
Q ss_pred EEecC-CCCHHHHHHHHHHH----HCCCC------CCeEEEEEeCCCc---eeecc----------CCCCcccCCCCCCC
Q psy13905 35 KKLKL-NNTIGELKQKLELL----TGQMS------SNMTISLYNRNHD---LVSHL----------SDNSMLLGQYPVEN 90 (248)
Q Consensus 35 ~r~~~-~~TI~eLK~KLe~~----tGipp------~~mrL~l~~~~g~---~i~~L----------~~d~~~L~~y~i~d 90 (248)
..+++ +.|+.+|++.+... .|.+| ..|+|....-.-+ .+..| .+++.+|.++||+.
T Consensus 20 ~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n 99 (122)
T PF10209_consen 20 HNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN 99 (122)
T ss_pred ecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence 44787 99999998877666 45544 3455544321111 12222 35667788899988
Q ss_pred CcEEEEEe
Q psy13905 91 EMTLFVEG 98 (248)
Q Consensus 91 G~~IhVvD 98 (248)
..+|-+.-
T Consensus 100 ETEiSfF~ 107 (122)
T PF10209_consen 100 ETEISFFN 107 (122)
T ss_pred cceeeeeC
Confidence 87776654
No 98
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=65.85 E-value=32 Score=25.94 Aligned_cols=70 Identities=7% Similarity=0.110 Sum_probs=49.1
Q ss_pred ecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 10 IMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 10 ~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
-|++...+.+.|+-+.. .+.++...||.+|=..| ++++...-+.+. |..+ +-..-.++-++
T Consensus 10 ~~~~~~~~~m~I~VNG~-------~~~~~~~~tl~~LL~~l----~~~~~~vAVevN---g~iV-----pr~~w~~t~L~ 70 (84)
T PRK06083 10 TTEGAAMVLITISINDQ-------SIQVDISSSLAQIIAQL----SLPELGCVFAIN---NQVV-----PRSEWQSTVLS 70 (84)
T ss_pred eccCCCCceEEEEECCe-------EEEcCCCCcHHHHHHHc----CCCCceEEEEEC---CEEe-----CHHHcCcccCC
Confidence 36777777777776555 36778899999887764 777766666554 5552 33445677789
Q ss_pred CCcEEEEEe
Q psy13905 90 NEMTLFVEG 98 (248)
Q Consensus 90 dG~~IhVvD 98 (248)
+|++|.|+-
T Consensus 71 egD~IEIv~ 79 (84)
T PRK06083 71 SGDAISLFQ 79 (84)
T ss_pred CCCEEEEEE
Confidence 999888864
No 99
>KOG4583|consensus
Probab=65.83 E-value=3 Score=39.54 Aligned_cols=55 Identities=20% Similarity=0.096 Sum_probs=41.4
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCC--CCeEEEEEeCCCce
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS--SNMTISLYNRNHDL 72 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp--~~mrL~l~~~~g~~ 72 (248)
-.--|+++|.|+..+. -+.++..+..|||+.||.-|+.+.=-.| .+|||+|. |+.
T Consensus 6 ~e~~v~lliks~Nq~y--~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYs---gkl 62 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSY--KDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYS---GKL 62 (391)
T ss_pred CCcceEEEecCCCccc--cceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhh---ccc
Confidence 3446889999887662 1247888999999999999998854433 57899987 664
No 100
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=63.94 E-value=23 Score=25.21 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=34.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCC----CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQ----MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGi----pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..++...||.+|.+.|....+- ......+.+. |+.+. .++.+++|.+|.++-
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vN---g~~v~---------~~~~l~~gD~v~i~p 75 (80)
T cd00754 19 ELELPEGATVGELLDALEARYPGLLEELLARVRIAVN---GEYVR---------LDTPLKDGDEVAIIP 75 (80)
T ss_pred EEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEEC---CeEcC---------CCcccCCCCEEEEeC
Confidence 55677789999999999887542 2223333332 33311 457899999998864
No 101
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=61.78 E-value=27 Score=26.64 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=35.6
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCC---CCeEEEEEeCCCcee
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMS---SNMTISLYNRNHDLV 73 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp---~~mrL~l~~~~g~~i 73 (248)
..++.|++.+.+|++-+....|+.. ..-.|.|-|.+|..+
T Consensus 14 Rf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~V 56 (86)
T cd06409 14 RFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIV 56 (86)
T ss_pred EEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEE
Confidence 5677889999999999999999997 688999999888873
No 102
>PRK06437 hypothetical protein; Provisional
Probab=60.50 E-value=29 Score=24.79 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=36.1
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++.++...|+.+|=+.| |++++..-+.+. |..+ . .++.+++|.+|-++-
T Consensus 14 ~~~i~~~~tv~dLL~~L----gi~~~~vaV~vN---g~iv---~------~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 14 TIEIDHELTVNDIIKDL----GLDEEEYVVIVN---GSPV---L------EDHNVKKEDDVLILE 62 (67)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCccEEEEEC---CEEC---C------CceEcCCCCEEEEEe
Confidence 57788899999988766 888776655543 5552 1 667888999888764
No 103
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=57.39 E-value=21 Score=27.28 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=40.6
Q ss_pred EEecC----CCCHHHHHHHHHHHH-CCCCCCeEEEEEeCCCceeeccCCCC--cccCCCCCCCCcEEEEEe
Q psy13905 35 KKLKL----NNTIGELKQKLELLT-GQMSSNMTISLYNRNHDLVSHLSDNS--MLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 35 ~r~~~----~~TI~eLK~KLe~~t-Gipp~~mrL~l~~~~g~~i~~L~~d~--~~L~~y~i~dG~~IhVvD 98 (248)
|||+. +.|..+|++++..++ +.....-.|.+.|.+|..+..-.++. .-+++.+ .+-.+|+|..
T Consensus 17 RRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~-~~~~RlyI~~ 86 (87)
T cd06402 17 RRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN-DDTFRIYIKE 86 (87)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC-CCcEEEEEEe
Confidence 55655 457799999999997 55567889999999999744222222 2223333 3334777653
No 104
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=56.80 E-value=8.7 Score=29.12 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHH-HHHHCCCCCCeE----EEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905 39 LNNTIGELKQKL-ELLTGQMSSNMT----ISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 39 ~~~TI~eLK~KL-e~~tGipp~~mr----L~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~ 99 (248)
..+|+.+|-+++ ....|....... +++....+.. -....++|+.+|+.+|+.+.|.|-
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~---~~~l~k~L~elgi~~gs~L~v~D~ 69 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEY---DDNLPKKLSELGIVNGSILTVDDF 69 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSS---TTCTTSBGGGGT--TT-EEEEEET
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchh---hhcccCChhHcCCCCCCEEEEEEc
Confidence 368999999985 446666654433 2222111111 123468999999999999999994
No 105
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=54.94 E-value=33 Score=31.08 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=46.0
Q ss_pred eeeeeeecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEE
Q psy13905 4 QVEYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLY 66 (248)
Q Consensus 4 ~~~~~~~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~ 66 (248)
|+|-.+.-++....-+++.|.... . ..++++++.-+=+-.+|..+.|+|..+||+.-+
T Consensus 1 ~ie~i~~s~s~~~~~~F~~s~~~a--~---ViK~s~ti~~E~~~~~La~~LgVpiPq~rvi~~ 58 (238)
T cd05124 1 QIKAIDLSDSGVFGALFVESESGA--I---VVKSSPNIASEYFLSKLAKILGLPIPQMRVLEW 58 (238)
T ss_pred CceEEEecCCceEEEEEEcCCCcE--E---EEEcCccHHHHHHHHHHHHHhCCCCCceeeeec
Confidence 355566666666666777776544 4 688999998888999999999999999999765
No 106
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=51.33 E-value=56 Score=22.78 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=35.5
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..++...|+.+|.++| |+++....+.+. |+.+. ...-.++.+++|++|-++-
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vN---g~~v~-----~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALN---GEIVP-----RSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEEC---CEEcC-----HHHcCceecCCCCEEEEEE
Confidence 56788899999999887 477766665543 55421 1223345688898887764
No 107
>COG3462 Predicted membrane protein [Function unknown]
Probab=50.99 E-value=7.9 Score=31.03 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.8
Q ss_pred eecCCHHHHhhhhHHHHH
Q psy13905 111 KYVLPEEKYKEHKENLKN 128 (248)
Q Consensus 111 ky~lsee~Y~~r~dtvr~ 128 (248)
|=++|||||.++.+|+++
T Consensus 100 kGEItEEEY~r~~~~irr 117 (117)
T COG3462 100 KGEITEEEYRRIIRTIRR 117 (117)
T ss_pred cCCCCHHHHHHHHHHhcC
Confidence 569999999999999863
No 108
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=50.07 E-value=55 Score=22.77 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=34.1
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..++..+||.+|.+.| ++++....+.+. |..+ ....-.++.+++|.+|-++-
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN---~~iv-----~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVN---GEIV-----PRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEEC---CEEc-----CHHHcCceecCCCCEEEEEE
Confidence 56788899999999876 566644444433 4442 11223456788998887763
No 109
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=45.20 E-value=69 Score=28.01 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=33.2
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeC-CCceeeccCCCCcccCCC
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNR-NHDLVSHLSDNSMLLGQY 86 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~-~g~~i~~L~~d~~~L~~y 86 (248)
.++|...++..... ..++..++++-||++|.++|....+++.+ ..+|-+... +++....+ ..+.+|...
T Consensus 20 ~~kv~w~~~~~~~~-~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~-~~d~~i~~l 90 (213)
T PF14533_consen 20 QFKVTWLNDGLKEE-QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKIL-SEDEPISSL 90 (213)
T ss_dssp -EEEEEE-TTS-EE--EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS
T ss_pred EEEEEEECCCCcce-eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeec-CCCCchhhc
Confidence 45566665443211 11478899999999999999999999876 334544432 44543333 345555444
No 110
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=43.98 E-value=62 Score=25.81 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=26.5
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEc
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLD 200 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelD 200 (248)
.-..+|++|++|.-.+ +..|+|.-++. .++-||+.
T Consensus 34 ~m~~~Lk~GD~VvT~g--Gi~G~V~~I~d------~~v~leia 68 (109)
T PRK05886 34 DLHESLQPGDRVHTTS--GLQATIVGITD------DTVDLEIA 68 (109)
T ss_pred HHHHhcCCCCEEEECC--CeEEEEEEEeC------CEEEEEEC
Confidence 3445799999999887 48999998852 46777764
No 111
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=43.39 E-value=16 Score=22.41 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.5
Q ss_pred cCCHHHHhhhhHHHH
Q psy13905 113 VLPEEKYKEHKENLK 127 (248)
Q Consensus 113 ~lsee~Y~~r~dtvr 127 (248)
.||+|+|+++..-++
T Consensus 16 ~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 16 EISEEEYEQKKARLL 30 (31)
T ss_pred CCCHHHHHHHHHHHh
Confidence 689999999887664
No 112
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=43.31 E-value=28 Score=25.14 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=33.6
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
..++.|+.|+.++=+.--.++|++++.=.|... ++. + |-+.+...-|+..|+.+.
T Consensus 10 ~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~---~k~---l-dlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 10 KVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHN---NKP---L-DLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp EE---TTSBHHHHHHHHHHHTT--GGG-EEEET---TEE---E-SSS-BHHHH---SS-EEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCccceEEEEC---CEE---e-ccccceeecCCCCCCEEe
Confidence 688999999999999999999999997676654 343 2 456667777777777654
No 113
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=43.24 E-value=84 Score=21.73 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=36.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.+.++...||.+|=..| |+++...-+.+. |..+. ...-.+..+++|++|-++-
T Consensus 9 ~~~~~~~~tl~~lL~~l----~~~~~~vav~vN---g~iv~-----r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALLARE----GLAGRRVAVEVN---GEIVP-----RSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHHHhc----CCCCCeEEEEEC---CeEeC-----HHHcCcccCCCCCEEEEEE
Confidence 46788889999887654 888877776654 54421 1223456688999888763
No 114
>COG5417 Uncharacterized small protein [Function unknown]
Probab=43.20 E-value=1.4e+02 Score=22.46 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=39.4
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee-----ccCCCCcccCCCCCCCCcEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS-----HLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~-----~L~~d~~~L~~y~i~dG~~IhV 96 (248)
..|+|...+|.-|=.-+.+. +++.+.+-.|.+|. .+..++..|.+|++.+|.++.+
T Consensus 20 DLrl~d~~pikklIdivwe~-------~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 20 DLRLPDYLPIKKLIDIVWES-------LKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeccccchHHHHHHHHHHH-------hhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 79999999998877666544 44445444444432 2346778899999999998765
No 115
>PF14001 YdfZ: YdfZ protein
Probab=42.72 E-value=32 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.9
Q ss_pred CCCccCCEEEEcCCCCceeEEEEe
Q psy13905 161 KDIEVGKRCKINDSDVRFGTVMFV 184 (248)
Q Consensus 161 ~~~~vG~Rv~v~~~~~~~G~vryv 184 (248)
..|..|+||.+.+. ...|+|+-+
T Consensus 8 N~i~~G~rVMiagt-G~~gvikAi 30 (64)
T PF14001_consen 8 NAITTGSRVMIAGT-GATGVIKAI 30 (64)
T ss_pred CcCCCCCEEEEcCC-CcccEEeee
Confidence 46889999999865 678888877
No 116
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=40.87 E-value=37 Score=30.47 Aligned_cols=36 Identities=14% Similarity=-0.038 Sum_probs=27.8
Q ss_pred cceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEe
Q psy13905 32 LNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN 67 (248)
Q Consensus 32 ~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~ 67 (248)
.|+..++..+|..+|.+++....|++|...||.-..
T Consensus 191 ~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~ 226 (249)
T PF12436_consen 191 EFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVN 226 (249)
T ss_dssp -EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEec
Confidence 479999999999999999999999999999887653
No 117
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=38.34 E-value=48 Score=24.96 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=25.2
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEc
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLD 200 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelD 200 (248)
+-...+++|++|...+ +..|+|.-++. .++-||..
T Consensus 33 ~m~~~L~~Gd~VvT~g--Gi~G~V~~i~d------~~v~vei~ 67 (84)
T TIGR00739 33 KLIESLKKGDKVLTIG--GIIGTVTKIAE------NTIVIELN 67 (84)
T ss_pred HHHHhCCCCCEEEECC--CeEEEEEEEeC------CEEEEEEC
Confidence 3345699999999887 48999998863 34555554
No 118
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=37.80 E-value=12 Score=28.26 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=39.1
Q ss_pred EEecCCCCHHHHHHHHHHHH--C-----CCCCCeEEEEEeCCCceeecc--CCCCcccCCCCCCCCcEEEEEeCC
Q psy13905 35 KKLKLNNTIGELKQKLELLT--G-----QMSSNMTISLYNRNHDLVSHL--SDNSMLLGQYPVENEMTLFVEGNY 100 (248)
Q Consensus 35 ~r~~~~~TI~eLK~KLe~~t--G-----ipp~~mrL~l~~~~g~~i~~L--~~d~~~L~~y~i~dG~~IhVvD~~ 100 (248)
+.+++++|+.+|=+.|...- . +....-.|++... ..+... .+=+++|.+. +.+|..|+|.|..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~p--p~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSP--PSLEEATRPNLSKKLKEL-LSDGEEITVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSS--HHHHHHTGGGGSSBTTTT-HHSSEEEEEEETT
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCC--HHHHHHhhhhhhhhHHHH-hcCCCEEEEECCC
Confidence 36889999999999998752 1 1122223332211 001111 1225788999 9999999999986
No 119
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=37.10 E-value=1e+02 Score=22.16 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=39.0
Q ss_pred ceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCC--CCCCeEEE-EEeCCCceeeccCCCCcc
Q psy13905 15 GTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQ--MSSNMTIS-LYNRNHDLVSHLSDNSML 82 (248)
Q Consensus 15 ~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGi--pp~~mrL~-l~~~~g~~i~~L~~d~~~ 82 (248)
++|+|+....... ... ...++++.|..++-..+-..+|+ +|++=.|. +....|.. ..|.++..+
T Consensus 3 ~~lrVy~~~~~~~~~~k---~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~e-r~L~~~E~p 70 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYK---TIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEE-RPLDDDECP 70 (93)
T ss_dssp EEEEEEETTSSSCCSEE---EEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEE-EEETTTSBH
T ss_pred eEEEEEcCCCCCCccEE---EEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEE-EEcCCCCch
Confidence 3566666643321 012 58999999999999999999999 44444563 23233322 335444443
No 120
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=36.95 E-value=1.1e+02 Score=21.16 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=32.8
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 35 KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 35 ~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+.+ ...|+.+|.+.| ++++....+.+. +..+ +.....+..+++|++|-++-
T Consensus 10 ~~~-~~~tl~~Ll~~l----~~~~~~vavavN---~~iv-----~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 10 LQT-EATTLALLLAEL----DYEGNWLATAVN---GELV-----HKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEc-CcCcHHHHHHHc----CCCCCeEEEEEC---CEEc-----CHHHcCccccCCCCEEEEEE
Confidence 445 346999998776 677654444443 4431 23345577899999988764
No 121
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=35.26 E-value=38 Score=29.60 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=24.7
Q ss_pred ceEEecCCCCHHHHHHHHHHHHCCCCC---CeEEEEEeC
Q psy13905 33 NLKKLKLNNTIGELKQKLELLTGQMSS---NMTISLYNR 68 (248)
Q Consensus 33 ~E~r~~~~~TI~eLK~KLe~~tGipp~---~mrL~l~~~ 68 (248)
|-..+.++.|.+++|+||..++|++-. ..++.+...
T Consensus 135 F~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~ 173 (213)
T PF14533_consen 135 FLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQN 173 (213)
T ss_dssp EEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEET
T ss_pred EEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEec
Confidence 678999999999999999999999864 456777543
No 122
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=34.80 E-value=1.3e+02 Score=22.30 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=39.9
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLG 84 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~ 84 (248)
-..+-|++||.++=.|+-.+=|+.++.-.+.+. +++.+..++.|..+|.
T Consensus 13 ~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~--g~~k~l~~~qD~~~L~ 61 (73)
T cd01817 13 VVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV--GGDKPLVLDQDSSVLA 61 (73)
T ss_pred EEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe--cCCcccccCCccceee
Confidence 577889999999999999999999999998887 2234456777777664
No 123
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=34.66 E-value=28 Score=24.46 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCCccCCEEEEcCCCCceeEEEEecccCCC--CceEEEEEEcCCCCCCceeE
Q psy13905 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFS--SGVWVGVKLDEPFGKNNGTV 210 (248)
Q Consensus 161 ~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~--~g~wvGVelDep~GkndGs~ 210 (248)
..|..|+||++.....++=|+.-. ++. .-.+=.|.-|+-.|+.+||+
T Consensus 4 Gpf~~GdrVQlTD~Kgr~~Ti~L~---~G~~fhThrG~i~HDdlIG~~eGsV 52 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGRKHTITLE---PGGEFHTHRGAIRHDDLIGRPEGSV 52 (54)
T ss_dssp -S--TT-EEEEEETT--EEEEE-----TT-EEEETTEEEEHHHHTT--TTEE
T ss_pred CCCCCCCEEEEccCCCCeeeEEEC---CCCeEEcCccccchhheecCCCcEE
Confidence 358899999998644555555432 110 01333466777778888876
No 124
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=33.27 E-value=60 Score=26.05 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=21.2
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecc
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGE 186 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~ 186 (248)
.-...|++||+|.-.+ +..|+|.-++.
T Consensus 32 em~~sLk~GD~VvT~G--Gi~G~V~~I~~ 58 (113)
T PRK06531 32 NQLNAIQKGDEVVTIG--GLYGTVDEVDT 58 (113)
T ss_pred HHHHhcCCCCEEEECC--CcEEEEEEEec
Confidence 3445799999998887 48999988853
No 125
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=32.97 E-value=1.3e+02 Score=21.01 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=35.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.+.++...||.+|=..| |+++..--+.+. +..+. ......+ +++|.+|-++-
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~~~vav~~N---~~iv~-----r~~~~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 9 QVEVDEQTTVAALLDSL----GFPEKGIAVAVD---WSVLP-----RSDWATK-LRDGARLEVVT 60 (65)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCcEEEEEC---CcCcC-----hhHhhhh-cCCCCEEEEEe
Confidence 46788899998887654 888877777775 44311 1222345 89999988763
No 126
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=31.65 E-value=2.2e+02 Score=21.16 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=34.6
Q ss_pred ecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEE
Q psy13905 10 IMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLY 66 (248)
Q Consensus 10 ~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~ 66 (248)
|--....++|.|.++-... .-=....++.+|++.|+.++|++..+..+++.
T Consensus 25 I~Rt~~~i~I~I~tarPg~------vIG~~G~~i~~L~~~L~k~~~~~~~~i~v~~~ 75 (81)
T cd02413 25 VRVTPTRTEIIIRATRTQN------VLGEKGRRIRELTSLVQKRFNFPEGSVELYAE 75 (81)
T ss_pred EEEcCCeEEEEEEeCCCce------EECCCchhHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 3333445666666654431 11235688999999999999999888887543
No 127
>PRK07440 hypothetical protein; Provisional
Probab=31.34 E-value=1.4e+02 Score=21.35 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=36.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.+.++..+||.+|=..| |+++...-+.+. +..+ +...-.++.+++|++|.|+-
T Consensus 13 ~~~~~~~~tl~~lL~~l----~~~~~~vav~~N---~~iv-----~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 13 TRTCSSGTSLPDLLQQL----GFNPRLVAVEYN---GEIL-----HRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCeEEEEEC---CEEe-----CHHHcCceecCCCCEEEEEE
Confidence 46788899999887644 677766666665 5542 22334667788999888764
No 128
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=31.08 E-value=21 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCCceeEcCeEeeecCCCc
Q psy13905 194 WVGVKLDEPFGKNNGTVKDVKYFECEENY 222 (248)
Q Consensus 194 wvGVelDep~GkndGs~~G~rYF~c~~~~ 222 (248)
.+|..++...-..--+++|+.||-|.+.+
T Consensus 7 Vcgm~v~~~~a~~k~~Y~GktYYFcse~~ 35 (53)
T COG3350 7 VCGMKVDNENAEYKSSYGGKTYYFCSEEC 35 (53)
T ss_pred CcCccccccccceeEEeCCEEEEEeCHHH
Confidence 46666665555566689999999997544
No 129
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=29.91 E-value=74 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=25.0
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEc
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLD 200 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelD 200 (248)
+-...+++||+|...+ +..|+|.-+.. ..+-+|..
T Consensus 48 ~~~~~Lk~Gd~VvT~g--Gi~G~Vv~i~~------~~v~lei~ 82 (106)
T PRK05585 48 KMLSSLAKGDEVVTNG--GIIGKVTKVSE------DFVIIELN 82 (106)
T ss_pred HHHHhcCCCCEEEECC--CeEEEEEEEeC------CEEEEEEC
Confidence 3445799999998887 48999988753 35555553
No 130
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=27.47 E-value=1.1e+02 Score=17.08 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.9
Q ss_pred CccCCEEEEcCC
Q psy13905 163 IEVGKRCKINDS 174 (248)
Q Consensus 163 ~~vG~Rv~v~~~ 174 (248)
+.+|++|.|..+
T Consensus 2 ~~~G~~V~I~~G 13 (28)
T smart00739 2 FEVGDTVRVIAG 13 (28)
T ss_pred CCCCCEEEEeEC
Confidence 678999999854
No 131
>PF07238 PilZ: PilZ domain; InterPro: IPR009875 The ubiquitous bacterial second messenger cyclic-di-GMP (c-di-GMP) is associated with the regulation of biofilm formation, the control of exopolysaccharide synthesis, flagellar- and pili-based motility, gene expression, interactions of bacteria with eukaryotic hosts and multicellular behaviour in diverse bacteria. With the exception of bacterial cellulose synthases, the identities of c-di-GMP receptors and end targets of the proteins having one or more PilZ domains are mostly uncharacterised. However it was suggested that the PilZ domains present in the BcsA subunits of bacterial cellulose synthases function in c-di-GMP binding []. More recently YcgR (see IPR023787 from INTERPRO) was found to bind c-di-GMP tightly and specifically; also isolated PilZ domains from YcgR and BcsA bound c-di-GMP indicating that the PilZ domain was sufficient for binding of c-di-GMP and significantly that site-directed mutagenesis performed on YcgR implicated the most conserved residues in the PilZ domain directly in c-di-GMP binding []. It was suggested that c-di-GMP binding to PilZ brings about conformational changes in the protein that stabilise the bound ligand and probability initiates the downstream signal transduction cascade. In the case of YcgR, c-di-GMP binding regulates flagellum-based motility in a c-di-GMP-dependent manner (see IPR023787 from INTERPRO) []. The association of the PilZ domain with a variety of other domains, including likely components of bacterial multidrug secretion system, could provide clues to multiple functions of the c-di-GMP in bacterial pathogenesis and cell development. Binding and mutagenesis studies of several PilZ domain proteins have confirmed this observation and demonstrated that c-di-GMP binding depends on residues in RxxxR and D/NxSxxG sequence motifs. The crystal structure, at 1.7 A, of a PilZ domain::c-di-GMP complex from Vibrio cholerae shows c-di-GMP contacting seven of nine strongly conserved residues. Binding of c-di-GMP causes a conformational switch whereby the C- and N-terminal domains are brought into close opposition forming a new allosteric interaction surface that spans these domains and the c-di-GMP at their interface []. ; GO: 0035438 cyclic-di-GMP binding; PDB: 2RDE_B 1YLN_A 3KYG_A 3DSG_B 2GJG_A 3KYF_A 1YWU_A 2L74_A 2L1T_A 3CNR_A ....
Probab=27.40 E-value=1.2e+02 Score=21.48 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCccCCEEEEc----CCC-C-ceeEEEEecccCCCCceEEEEEEcC
Q psy13905 162 DIEVGKRCKIN----DSD-V-RFGTVMFVGETKFSSGVWVGVKLDE 201 (248)
Q Consensus 162 ~~~vG~Rv~v~----~~~-~-~~G~vryvG~~~~~~g~wvGVelDe 201 (248)
.+.+|+++.+. ... . ..|.|+++-+. ..+.++|+++.+
T Consensus 44 ~~~~~~~v~l~~~~~~~~~~~~~~~V~~~~~~--~~~~~~g~~f~~ 87 (102)
T PF07238_consen 44 PLEPGDRVRLSFSLPGGGFPIVTGRVVRIQKD--SDGYRVGVEFVD 87 (102)
T ss_dssp G--TTSEEEEEEECTTTSCEEEEEEEEEEEEE--SSEEEEEEEECH
T ss_pred CCCCCCEEEEEEEeCCCCeeEEEEEEEEEECC--CCceEEEEEEee
Confidence 57788877665 111 2 67888888666 677999999954
No 132
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=26.70 E-value=2.1e+02 Score=20.85 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=37.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCccc
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLL 83 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L 83 (248)
-..+.|++||.++=+++=.+-|+.|+.=.|.+...++..+..++.|...|
T Consensus 13 ~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~~~L 62 (72)
T cd01760 13 VVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSSSL 62 (72)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhhhhh
Confidence 57889999999999999999999999999998844331333344444433
No 133
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=26.08 E-value=1.8e+02 Score=20.94 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=32.2
Q ss_pred eEEecCC-CCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLN-NTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~-~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..++.. .|+.+|.+.|....+ . |. +........+ ++...-.+..+++|.+|.+.-
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p---~---l~--~~~~~~~v~v-n~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGP---E---LA--ASRGQVMVAV-NEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCc---h---hh--hhccceEEEE-CCEEcCCCcCcCCCCEEEEeC
Confidence 4677776 899999999988863 1 10 0001111111 111111367899999988764
No 134
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=26.01 E-value=2.6e+02 Score=21.19 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=32.3
Q ss_pred EEecCC----CCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905 35 KKLKLN----NTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72 (248)
Q Consensus 35 ~r~~~~----~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~ 72 (248)
|||+.. -+-.++...|+.+..++.-.--|.+.|.+|..
T Consensus 12 RRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDL 53 (80)
T cd06403 12 RRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDL 53 (80)
T ss_pred EEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCE
Confidence 565543 67899999999999999988899999998887
No 135
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=25.92 E-value=1.1e+02 Score=22.45 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=37.8
Q ss_pred ecCCCCHHHHHHHHHHHHCCC-CCCeEEEEEeCCCceeeccCCCCcccCCCC-CCCCcEEEEEeCCC
Q psy13905 37 LKLNNTIGELKQKLELLTGQM-SSNMTISLYNRNHDLVSHLSDNSMLLGQYP-VENEMTLFVEGNYL 101 (248)
Q Consensus 37 ~~~~~TI~eLK~KLe~~tGip-p~~mrL~l~~~~g~~i~~L~~d~~~L~~y~-i~dG~~IhVvD~~l 101 (248)
++++.+|.+|++-|....-+. -.+-.|.+. |+. | ++...|+++. +.+|+.|+|+--.|
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~---g~~---L-~~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHN---GQR---L-DDFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEEC---CCc---c-CCchhhhhhhCCCCCcEEEEEecCC
Confidence 357889999999888775432 233345543 554 4 5666666654 88899998885433
No 136
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=25.91 E-value=2e+02 Score=20.93 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=27.5
Q ss_pred cCCCccCCEEEEc----CC--C-CceeEEEEecccCCCCceEEEEEEcCC
Q psy13905 160 LKDIEVGKRCKIN----DS--D-VRFGTVMFVGETKFSSGVWVGVKLDEP 202 (248)
Q Consensus 160 ~~~~~vG~Rv~v~----~~--~-~~~G~vryvG~~~~~~g~wvGVelDep 202 (248)
...+.+|++|.+. +. + ...|.|+|+-+.......++||+|.+.
T Consensus 34 ~~~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~~~~~~~~~~Gv~F~~~ 83 (96)
T TIGR02266 34 RKPLAVGTRVELKLTLPGGERPVELKGVVAWVRPAADGGPPGMGVRFEDL 83 (96)
T ss_pred CCCcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCCCCCCCCCeeEEEeccC
Confidence 3467899988875 21 1 357888888543222236899998754
No 137
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=25.71 E-value=2.4e+02 Score=19.69 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=34.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++.++..+||.+|-..| +.++....+.+. +..+ +...-..+.+++|++|-++-
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~~~vaVavN---~~iv-----~r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL----NQLQPGAALAIN---QQII-----PREQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEEC---CEEe-----ChHHcCccccCCCCEEEEEE
Confidence 57788899999988654 555555555554 4442 12224455688898887763
No 138
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=24.86 E-value=2.3e+02 Score=19.30 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=31.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..++...|+.+|-+.| |+++ ...+.+. |..+. ...-.+..+++|.+|.|+-
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~-~~~v~vN---~~~v~-----~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 9 TLSLPDGATVADALAAY----GARP-PFAVAVN---GDFVA-----RTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCCCCcHHHHHHhh----CCCC-CeEEEEC---CEEcC-----chhcccccCCCCCEEEEEe
Confidence 46788889999999877 4443 2333332 43311 1112344588899998864
No 139
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=24.45 E-value=1.1e+02 Score=22.73 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=27.1
Q ss_pred eEEecC-CCCHHHHHHHHHHHHCC-CCCCeEEEEEeCCCc
Q psy13905 34 LKKLKL-NNTIGELKQKLELLTGQ-MSSNMTISLYNRNHD 71 (248)
Q Consensus 34 E~r~~~-~~TI~eLK~KLe~~tGi-pp~~mrL~l~~~~g~ 71 (248)
...|+- +++|.+||..|-..-+. ...+-.|.++++...
T Consensus 13 ~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~t~ 52 (74)
T PF08783_consen 13 TITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQTG 52 (74)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESSS-
T ss_pred EEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCCCC
Confidence 355553 79999999999888777 556678888876543
No 140
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=24.03 E-value=2.4e+02 Score=19.96 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=34.9
Q ss_pred eEEecCC-CCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLN-NTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~-~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.+.++.. .||.+|-+. .|++++..-+.+. +..+ +...-..+.+++|++|.|+-
T Consensus 9 ~~~~~~~~~tv~~lL~~----l~~~~~~vav~vN---~~iv-----~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 9 QIEVPESVKTVAELLTH----LELDNKIVVVERN---KDIL-----QKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEEcCCCcccHHHHHHH----cCCCCCeEEEEEC---CEEe-----CHHHcCceecCCCCEEEEEE
Confidence 3567776 688887654 4778776666665 5542 22335566789999888763
No 141
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=23.62 E-value=82 Score=28.21 Aligned_cols=83 Identities=8% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCceEEEEEEe--CCCC---cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEe-CCCceeeccCCCCcccCC
Q psy13905 12 DGGGTVELYITN--SKDK---HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN-RNHDLVSHLSDNSMLLGQ 85 (248)
Q Consensus 12 ~~~~~V~v~ItS--~~~s---~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~-~~g~~i~~L~~d~~~L~~ 85 (248)
+....|-|++.. ..+. ..+ ..-++.+.+|++|-..|-.+-|.|++.--+.+.. ..+ .+..+ +...++..
T Consensus 64 ~~~~~iLlFlK~fDp~~q~L~~iG---h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~-~ie~i-~~~~t~~~ 138 (249)
T PF12436_consen 64 DPSDDILLFLKYFDPETQTLRYIG---HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPN-MIEPI-DPNQTFEK 138 (249)
T ss_dssp -TTTEEEEEEEEEETTTTEEEEEE---EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETT-EEEE---SSSBHHH
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEe---EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccc-eeeEc-CCCCchhh
Confidence 345578888883 3222 122 4678999999999999999999998766555432 222 24555 78899999
Q ss_pred CCCCCCcEEEEEeC
Q psy13905 86 YPVENEMTLFVEGN 99 (248)
Q Consensus 86 y~i~dG~~IhVvD~ 99 (248)
..+++|..|-+...
T Consensus 139 ~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 139 AELQDGDIICFQRA 152 (249)
T ss_dssp TT--TTEEEEEEE-
T ss_pred cccCCCCEEEEEec
Confidence 99999998887764
No 142
>PF13437 HlyD_3: HlyD family secretion protein
Probab=23.08 E-value=1.9e+02 Score=21.39 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=26.1
Q ss_pred cCCCc-cCCEEEEc-C-C--CCceeEEEEecccCCCCceEEEEE
Q psy13905 160 LKDIE-VGKRCKIN-D-S--DVRFGTVMFVGETKFSSGVWVGVK 198 (248)
Q Consensus 160 ~~~~~-vG~Rv~v~-~-~--~~~~G~vryvG~~~~~~g~wvGVe 198 (248)
...++ .|+++.+. . . ....|+|.+|++.....+..+-|+
T Consensus 47 ~~~i~~~g~~v~v~~~~~~~~~~~g~V~~I~~~~~~~~~~~~v~ 90 (105)
T PF13437_consen 47 IARIKDPGQKVTVRLDPGPEKTIEGKVSSISPSPDPQGGTYRVE 90 (105)
T ss_pred hcceEeCCCEEEEEECCCCCcEEEEEEEEEeCcccCCCcEEEEE
Confidence 34576 99999886 2 2 267899999999755444344433
No 143
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=23.01 E-value=98 Score=23.31 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=17.7
Q ss_pred CCccCCEEEEcCC--CCceeEEEEe
Q psy13905 162 DIEVGKRCKINDS--DVRFGTVMFV 184 (248)
Q Consensus 162 ~~~vG~Rv~v~~~--~~~~G~vryv 184 (248)
.+..||+|.|..+ .+..|+|..|
T Consensus 8 ~I~~GD~V~Vi~G~dKGK~G~V~~V 32 (83)
T CHL00141 8 HVKIGDTVKIISGSDKGKIGEVLKI 32 (83)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEE
Confidence 6889999999733 2577888777
No 144
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=22.70 E-value=43 Score=30.07 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=14.6
Q ss_pred ecCCHHHHhhhhHHHHH
Q psy13905 112 YVLPEEKYKEHKENLKN 128 (248)
Q Consensus 112 y~lsee~Y~~r~dtvr~ 128 (248)
==||.|||++|+.++|.
T Consensus 158 ~PmTkEEyearQSvIRr 174 (225)
T PF10500_consen 158 APMTKEEYEARQSVIRR 174 (225)
T ss_pred CCCCHHHHHHHHhhhee
Confidence 35999999999998874
No 145
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=22.47 E-value=68 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=17.6
Q ss_pred ecCCHHHHhhhhHHHHHHHHH
Q psy13905 112 YVLPEEKYKEHKENLKNFMMK 132 (248)
Q Consensus 112 y~lsee~Y~~r~dtvr~~kk~ 132 (248)
=+||+|+|+.+.+-++.=...
T Consensus 47 GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 47 GEISEEEFERREDELLDRLEE 67 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 379999999999999985553
No 146
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=21.87 E-value=76 Score=26.61 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=17.9
Q ss_pred cCCCccCCEEEEcCCCCceeEEEEecccC
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTVMFVGETK 188 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~ 188 (248)
...+++||+|++.+ ..|.|.-+|...
T Consensus 58 ~~pf~vGD~I~i~~---~~G~V~~I~l~~ 83 (206)
T PF00924_consen 58 ERPFKVGDRIEIGG---VEGRVEEIGLRS 83 (206)
T ss_dssp C-SS-TT-EEESSS----EEEEEEE-SSE
T ss_pred cCCccCCCEEEEEE---eehHHHhcCcce
Confidence 45799999999985 699999998764
No 147
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.78 E-value=39 Score=31.41 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=16.5
Q ss_pred CCCceeEcC----------eEeeecCCCceee
Q psy13905 204 GKNNGTVKD----------VKYFECEENYGMF 225 (248)
Q Consensus 204 GkndGs~~G----------~rYF~c~~~~G~F 225 (248)
--|.|+++| .||-.|..|||+=
T Consensus 21 SsnSgS~KgSd~Sp~~rr~~rY~~C~dNHGik 52 (305)
T PF15290_consen 21 SSNSGSCKGSDSSPTMRRSGRYMSCGDNHGIK 52 (305)
T ss_pred cCCCccccCCCCCCCCCCCCceeecccCCCCC
Confidence 345666665 6899999999973
No 148
>PF12882 NUT_C: NUT protein C terminal; InterPro: IPR024313 This domain is found in the C-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=21.33 E-value=15 Score=30.77 Aligned_cols=8 Identities=100% Similarity=1.664 Sum_probs=7.0
Q ss_pred eeeeecCC
Q psy13905 6 EYMDIMDG 13 (248)
Q Consensus 6 ~~~~~~~~ 13 (248)
|||||||+
T Consensus 27 Ey~dIm~~ 34 (144)
T PF12882_consen 27 EYMDIMDG 34 (144)
T ss_pred HHHHHHHH
Confidence 79999985
No 149
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=20.94 E-value=3.3e+02 Score=19.69 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.1
Q ss_pred eEEecCCCCHHHHHHHHHHHH
Q psy13905 34 LKKLKLNNTIGELKQKLELLT 54 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t 54 (248)
+..++ ..|+.+|.+.|....
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~ 38 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARY 38 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHC
Confidence 45555 899999999998775
No 150
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=20.86 E-value=1.2e+02 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.9
Q ss_pred CCccCCEEEEcCC--CCceeEEEEe
Q psy13905 162 DIEVGKRCKINDS--DVRFGTVMFV 184 (248)
Q Consensus 162 ~~~vG~Rv~v~~~--~~~~G~vryv 184 (248)
.+..||+|.|..+ .+..|+|..+
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V 30 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAV 30 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEE
Confidence 6889999999733 2677888877
No 151
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=20.84 E-value=3e+02 Score=20.50 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=38.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
...++...||.++=+ -.|+|...-.+++. +|+. ..+ +|-+++|.+|.|.-
T Consensus 26 ~~~~~~~~tvkd~IE----sLGVP~tEV~~i~v--NG~~-v~~--------~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 26 THPFDGGATVKDVIE----SLGVPHTEVGLILV--NGRP-VDF--------DYRLKDGDRVAVYP 75 (81)
T ss_pred EEecCCCCcHHHHHH----HcCCChHHeEEEEE--CCEE-CCC--------cccCCCCCEEEEEe
Confidence 577888999987654 46999999999987 3554 222 48889999998864
No 152
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=20.83 E-value=1.4e+02 Score=22.36 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905 39 LNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72 (248)
Q Consensus 39 ~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~ 72 (248)
..-++.+|+.|--...+++...-+|.|. .||..
T Consensus 19 ~A~sL~eL~~K~~~~l~~~~~~~~lvL~-eDGT~ 51 (78)
T PF02017_consen 19 AASSLEELLEKACDKLQLPEEPVRLVLE-EDGTE 51 (78)
T ss_dssp EESSHHHHHHHHHHHHT-SSSTCEEEET-TTTCB
T ss_pred EcCCHHHHHHHHHHHhCCCCcCcEEEEe-CCCcE
Confidence 3579999999999999999988899886 56765
No 153
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=20.33 E-value=4.3e+02 Score=20.71 Aligned_cols=62 Identities=26% Similarity=0.122 Sum_probs=42.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCceeeccCCCC-------cccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLVSHLSDNS-------MLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i~~L~~d~-------~~L~~y~i~dG~~IhVv 97 (248)
....+++.|++||=..|...+.+++ .+.+|.++-.+ ....|.... +.|...|-.+...|+.+
T Consensus 16 Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~--l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~l 85 (97)
T cd01775 16 TLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHD--LSRVLRPTEKPLLIQKRLLLQVGYEERDRIEDI 85 (97)
T ss_pred EEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECC--eeeecCCcCCcHHHHHHHHHHcCCCCCCcHHHh
Confidence 5788999999999999999999988 78899988432 212232222 24445555555555544
No 154
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.09 E-value=2.7e+02 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=22.3
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEeccc
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGET 187 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~ 187 (248)
.-..++..||+|.-.+ +..|+|--++.-
T Consensus 39 ~ml~sL~kGD~VvT~g--Gi~G~V~~v~d~ 66 (97)
T COG1862 39 ELLNSLKKGDEVVTIG--GIVGTVTKVGDD 66 (97)
T ss_pred HHHHhccCCCEEEEcC--CeEEEEEEEecC
Confidence 3445789999998887 489999999763
Done!