Query psy13905
Match_columns 248
No_of_seqs 253 out of 1103
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:28:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lpl_A Hypothetical 25.4 kDa p 100.0 4.3E-35 1.5E-39 226.1 9.4 88 156-244 5-94 (95)
2 4b6m_A Tubulin-specific chaper 100.0 6.9E-34 2.4E-38 214.2 9.4 81 160-241 3-84 (84)
3 1whg_A Tubulin specific chaper 100.0 6.5E-34 2.2E-38 225.6 9.7 88 153-240 23-112 (113)
4 1t0y_A Tubulin folding cofacto 100.0 4.3E-32 1.5E-36 217.3 12.1 113 15-132 5-122 (122)
5 2e3h_A Restin; CAP-Gly, cytopl 100.0 3.7E-31 1.3E-35 202.1 8.8 78 162-241 1-78 (90)
6 1whh_A Clipr-59; microtubule b 100.0 6E-30 2.1E-34 199.3 8.8 78 159-238 22-100 (102)
7 3rdv_A CAP-Gly domain-containi 100.0 1.3E-29 4.6E-34 186.1 8.1 69 162-232 2-70 (72)
8 2cp6_A Restin; microtubule bin 100.0 1.8E-29 6E-34 212.1 9.6 81 159-241 35-115 (172)
9 2e3i_A Restin; CAP-Gly, cytopl 100.0 2.5E-29 8.7E-34 190.5 8.9 75 162-238 2-77 (86)
10 1txq_A Dynactin 1; protein com 100.0 2.2E-29 7.5E-34 193.4 8.5 76 158-234 8-83 (93)
11 2cp2_A CLIP-115, KIAA0291; mic 100.0 2.4E-29 8.1E-34 193.8 8.1 77 156-234 12-88 (95)
12 1ixd_A Cylindromatosis tumour- 100.0 5.5E-29 1.9E-33 194.7 9.0 83 158-240 13-97 (104)
13 2cp3_A CLIP-115, KIAA0291; mic 100.0 8.9E-29 3E-33 186.7 8.7 74 160-235 5-78 (84)
14 1whk_A 1700024K14RIK, riken cD 100.0 5.1E-29 1.7E-33 190.6 7.2 77 159-236 9-85 (91)
15 1whl_A Cylindromatosis tumor s 100.0 7.4E-29 2.5E-33 191.3 8.0 79 160-238 5-93 (95)
16 2coz_A CAP350, centrosome-asso 100.0 1.1E-28 3.9E-33 197.5 9.1 77 158-238 27-103 (122)
17 2coy_A Dynactin-1; microtubule 100.0 1.3E-28 4.5E-33 194.7 8.8 76 159-235 30-105 (112)
18 2z0w_A CAP-Gly domain-containi 100.0 6.9E-29 2.4E-33 191.6 6.6 73 160-234 8-80 (96)
19 2cp0_A Clipr-59 protein, clipr 100.0 1.2E-28 4E-33 189.9 7.5 72 161-234 15-86 (95)
20 1whj_A 1700024K14RIK, riken cD 99.9 2.4E-28 8.3E-33 190.3 8.1 77 160-238 22-99 (102)
21 2cp5_A Restin; microtubule bin 99.9 6.5E-28 2.2E-32 197.1 8.1 77 156-234 58-134 (141)
22 2cow_A Kinesin-like protein KI 99.9 6.9E-28 2.4E-32 187.1 7.4 78 158-237 19-97 (100)
23 1whm_A Cylindromatosis tumor s 99.9 3E-27 1E-31 180.1 7.3 73 159-231 6-82 (92)
24 4b6w_A Tubulin-specific chaper 99.9 1.5E-22 5.2E-27 152.9 9.7 83 15-100 1-84 (86)
25 2kj6_A Tubulin folding cofacto 99.8 9.9E-21 3.4E-25 146.2 9.7 86 12-100 10-96 (97)
26 2kjr_A CG11242; UBL, ubiquitin 99.8 7.9E-19 2.7E-23 134.9 9.4 83 13-99 12-95 (95)
27 1wjn_A Tubulin-folding protein 99.7 7E-18 2.4E-22 129.0 10.1 84 14-100 7-93 (97)
28 1v6e_A Cytoskeleton-associated 99.7 8.6E-18 2.9E-22 128.2 10.4 83 15-100 6-88 (95)
29 1wxv_A BAG-family molecular ch 99.4 4E-13 1.4E-17 101.1 7.0 76 14-100 5-85 (92)
30 2bwf_A Ubiquitin-like protein 99.4 1.4E-12 4.6E-17 94.0 7.7 71 17-99 5-75 (77)
31 3plu_A Ubiquitin-like modifier 99.4 1.6E-12 5.5E-17 99.4 7.7 74 13-97 18-91 (93)
32 3phx_B Ubiquitin-like protein 99.3 2.8E-12 9.7E-17 93.3 8.3 73 15-98 3-75 (79)
33 2kan_A Uncharacterized protein 99.3 2E-12 6.8E-17 98.4 6.8 75 13-99 12-87 (94)
34 3m63_B Ubiquitin domain-contai 99.3 1.8E-12 6.2E-17 99.9 6.1 74 14-99 26-99 (101)
35 2faz_A Ubiquitin-like containi 99.3 6.9E-12 2.4E-16 90.9 8.9 73 16-98 2-75 (78)
36 1v86_A DNA segment, CHR 7, way 99.3 9E-13 3.1E-17 100.4 4.3 74 14-100 15-88 (95)
37 4eew_A Large proline-rich prot 99.3 5.7E-12 1.9E-16 93.6 8.4 74 12-97 13-86 (88)
38 2kk8_A Uncharacterized protein 99.3 2.7E-12 9.3E-17 95.7 6.4 74 15-98 9-82 (84)
39 2dzi_A Ubiquitin-like protein 99.3 5.3E-12 1.8E-16 91.7 7.7 75 13-98 4-78 (81)
40 2kd0_A LRR repeats and ubiquit 99.3 8.4E-12 2.9E-16 93.1 8.9 75 13-99 9-83 (85)
41 2wyq_A HHR23A, UV excision rep 99.3 9.2E-12 3.1E-16 91.5 8.5 74 15-99 4-80 (85)
42 3v6c_B Ubiquitin; structural g 99.3 1E-11 3.5E-16 93.1 8.4 74 14-98 15-88 (91)
43 1v5o_A 1700011N24RIK protein; 99.3 4.1E-12 1.4E-16 97.7 6.3 77 15-100 6-85 (102)
44 2klc_A Ubiquilin-1; ubiquitin- 99.3 9.7E-12 3.3E-16 95.7 8.3 75 13-99 22-96 (101)
45 3dbh_I NEDD8; cell cycle, acti 99.3 8.1E-12 2.8E-16 92.2 7.6 74 13-97 9-82 (88)
46 1wh3_A 59 kDa 2'-5'-oligoadeny 99.3 7.4E-12 2.5E-16 92.5 7.2 74 14-98 5-78 (87)
47 3mtn_B UBA80, ubcep1, ubiquiti 99.3 1.2E-11 4.3E-16 90.4 8.1 73 15-98 2-74 (85)
48 2hj8_A Interferon-induced 17 k 99.3 6.6E-12 2.2E-16 93.8 6.3 73 16-99 4-76 (88)
49 3n3k_B Ubiquitin; hydrolase, p 99.3 9.9E-12 3.4E-16 91.1 7.0 73 15-98 2-74 (85)
50 1we6_A Splicing factor, putati 99.3 1.5E-11 5.2E-16 95.8 8.3 76 13-98 24-102 (111)
51 4fbj_B NEDD8; effector-HOST ta 99.3 1.6E-11 5.5E-16 91.8 8.1 70 18-98 2-71 (88)
52 1ndd_A NEDD8, protein (ubiquit 99.2 1.6E-11 5.5E-16 87.6 7.6 70 18-98 2-71 (76)
53 1wx8_A Riken cDNA 4931431F19; 99.2 5.4E-12 1.9E-16 95.4 5.0 75 13-99 14-88 (96)
54 4dwf_A HLA-B-associated transc 99.2 2.6E-11 9E-16 90.3 8.7 74 14-99 3-76 (90)
55 1wy8_A NP95-like ring finger p 99.2 1.9E-11 6.7E-16 90.8 7.6 74 14-98 5-80 (89)
56 4hcn_B Polyubiquitin, ubiquiti 99.2 1.9E-11 6.3E-16 93.2 7.6 74 14-98 20-93 (98)
57 3a9j_A Ubiquitin; protein comp 99.2 2.4E-11 8.2E-16 86.8 7.7 70 18-98 2-71 (76)
58 1j8c_A Ubiquitin-like protein 99.2 3.1E-11 1.1E-15 96.6 9.1 75 14-100 30-104 (125)
59 1wx7_A Ubiquilin 3; ubiquitin- 99.2 1.9E-11 6.6E-16 94.4 7.6 75 13-99 14-88 (106)
60 1yqb_A Ubiquilin 3; structural 99.2 1.4E-11 4.7E-16 94.7 6.7 75 13-99 19-93 (100)
61 1wf9_A NPL4 family protein; be 99.2 7.3E-12 2.5E-16 97.4 4.9 81 15-100 6-95 (107)
62 1we7_A SF3A1 protein; structur 99.2 1.3E-11 4.3E-16 96.9 6.3 75 14-98 23-106 (115)
63 1uh6_A Ubiquitin-like 5; beta- 99.2 2E-11 6.8E-16 94.6 7.2 73 14-97 26-98 (100)
64 3vdz_A Ubiquitin-40S ribosomal 99.2 3.4E-11 1.1E-15 94.1 8.4 73 15-98 34-106 (111)
65 1wju_A NEDD8 ultimate buster-1 99.2 1.9E-11 6.6E-16 94.6 6.9 78 13-100 12-92 (100)
66 4a20_A Ubiquitin-like protein 99.2 2.2E-11 7.7E-16 93.7 6.9 77 12-98 15-94 (98)
67 1uel_A HHR23B, UV excision rep 99.2 4.7E-11 1.6E-15 90.4 8.5 72 18-100 2-76 (95)
68 2ojr_A Ubiquitin; lanthide-bin 99.2 6.6E-11 2.3E-15 92.3 9.4 74 14-98 33-106 (111)
69 2l7r_A Ubiquitin-like protein 99.2 1.5E-11 5.1E-16 93.1 5.3 70 16-98 19-88 (93)
70 1wgd_A Homocysteine-responsive 99.2 3.3E-11 1.1E-15 90.8 7.0 76 15-99 6-85 (93)
71 3k9o_B Ubiquitin, UBB+1; E2-25 99.2 4.8E-11 1.7E-15 89.8 7.8 72 17-99 2-73 (96)
72 1ttn_A DC-UBP, dendritic cell- 99.2 2.7E-11 9.1E-16 93.8 6.3 76 14-100 21-96 (106)
73 4dbg_A Ranbp-type and C3HC4-ty 99.2 4.6E-11 1.6E-15 93.3 7.5 77 14-98 20-98 (105)
74 3m62_B UV excision repair prot 99.2 3.2E-11 1.1E-15 93.5 6.3 73 17-100 2-74 (106)
75 1sif_A Ubiquitin; hydrophobic 99.2 6.8E-11 2.3E-15 88.4 7.5 70 18-98 11-80 (88)
76 1wgg_A Ubiquitin carboxyl-term 99.2 4.8E-11 1.6E-15 91.1 6.5 75 14-100 5-79 (96)
77 1v5t_A 8430435I17RIK protein; 99.2 2.3E-11 7.9E-16 91.5 4.5 74 14-99 5-82 (90)
78 2lxa_A Ubiquitin-like protein 99.1 3.4E-11 1.1E-15 90.8 4.4 73 17-99 2-77 (87)
79 1yx5_B Ubiquitin; proteasome, 99.1 1.7E-10 5.7E-15 87.6 7.7 72 18-100 2-73 (98)
80 2kdb_A Homocysteine-responsive 99.1 7.8E-11 2.7E-15 90.8 5.8 77 12-97 19-99 (99)
81 2uyz_B Small ubiquitin-related 99.1 1.2E-10 4.2E-15 84.5 6.5 72 16-98 3-74 (79)
82 2kdi_A Ubiquitin, vacuolar pro 99.1 2.4E-10 8.1E-15 89.8 8.7 75 15-100 8-82 (114)
83 3b08_A Polyubiquitin-C, ubiqui 99.1 3.1E-10 1.1E-14 91.2 9.2 99 18-134 2-107 (152)
84 1wyw_B Ubiquitin-like protein 99.1 1.5E-10 5.2E-15 88.1 6.7 76 12-98 17-92 (97)
85 3u30_A Ubiquitin, linear DI-ub 99.1 2.7E-10 9.2E-15 94.7 8.5 103 14-134 18-127 (172)
86 1wia_A Hypothetical ubiquitin- 99.1 2.3E-10 8E-15 86.3 7.1 75 13-100 4-78 (95)
87 3b1l_X E3 ubiquitin-protein li 98.7 1.3E-11 4.4E-16 88.9 0.0 57 34-97 14-70 (76)
88 1x1m_A Ubiquitin-like protein 99.1 1.7E-10 5.7E-15 89.5 6.2 74 15-99 11-99 (107)
89 2daf_A FLJ35834 protein; hypot 99.1 1.4E-10 4.8E-15 92.1 5.4 76 14-100 13-89 (118)
90 3rt3_B Ubiquitin-like protein 99.1 5E-10 1.7E-14 91.5 8.9 102 17-134 3-112 (159)
91 1v2y_A 3300001G02RIK protein; 99.0 1.1E-10 3.7E-15 91.1 4.4 74 15-99 6-95 (105)
92 2dzm_A FAS-associated factor 1 99.0 1.9E-10 6.3E-15 89.0 5.6 74 16-100 9-82 (100)
93 4ajy_B Transcription elongatio 99.0 4E-10 1.4E-14 89.6 7.4 58 34-98 15-79 (118)
94 3rt3_B Ubiquitin-like protein 99.0 5.7E-10 2E-14 91.2 8.4 73 15-98 80-152 (159)
95 3l0w_B Monoubiquitinated proli 99.0 6.8E-10 2.3E-14 93.0 8.3 71 18-99 2-72 (169)
96 2fnj_B Transcription elongatio 99.0 2.8E-10 9.6E-15 90.6 5.3 71 17-99 3-80 (118)
97 3u30_A Ubiquitin, linear DI-ub 99.0 7.2E-10 2.5E-14 92.1 7.3 70 17-97 97-166 (172)
98 2dzj_A Synaptic glycoprotein S 99.0 1.1E-09 3.6E-14 82.5 7.4 77 16-99 10-88 (88)
99 3b08_A Polyubiquitin-C, ubiqui 99.0 1.7E-09 5.7E-14 86.9 8.2 71 17-98 77-147 (152)
100 3q3f_A Ribonuclease/ubiquitin 99.0 9.2E-10 3.1E-14 94.1 7.0 71 17-98 106-176 (189)
101 3u5e_m 60S ribosomal protein L 99.0 7.5E-11 2.6E-15 94.2 0.0 70 18-99 2-72 (128)
102 3ai5_A Yeast enhanced green fl 98.9 2.6E-09 8.7E-14 97.6 9.7 82 6-98 223-304 (307)
103 2kzr_A Ubiquitin thioesterase 98.9 1.5E-09 5E-14 80.8 5.8 75 18-99 2-77 (86)
104 3shq_A UBLCP1; phosphatase, hy 98.9 1.9E-09 6.6E-14 98.8 6.3 75 14-100 3-80 (320)
105 3u5c_f 40S ribosomal protein S 98.9 2.2E-10 7.6E-15 94.7 0.0 69 18-98 2-71 (152)
106 1wgh_A Ubiquitin-like 3, HCG-1 98.9 7.4E-09 2.5E-13 82.0 8.4 75 13-98 13-97 (116)
107 1se9_A Ubiquitin family; ubiqu 98.8 4.3E-09 1.5E-13 84.6 6.3 74 15-98 15-101 (126)
108 2gow_A HCG-1 protein, ubiquiti 98.7 1.1E-08 3.6E-13 82.1 5.7 73 16-99 17-99 (125)
109 1oqy_A HHR23A, UV excision rep 98.6 3.4E-08 1.2E-12 92.2 4.9 74 14-98 5-82 (368)
110 2io1_B Small ubiquitin-related 98.4 6.2E-07 2.1E-11 68.2 8.1 76 13-99 4-79 (94)
111 1wm3_A Ubiquitin-like protein 98.4 1.8E-06 6.2E-11 62.0 8.4 70 17-97 2-71 (72)
112 3a4r_A Nfatc2-interacting prot 98.3 2.1E-06 7.2E-11 63.0 7.7 73 15-97 6-78 (79)
113 2xzm_9 RPS31E; ribosome, trans 98.3 9.5E-08 3.2E-12 81.6 0.0 53 34-98 14-66 (189)
114 2d07_B Ubiquitin-like protein 98.3 4E-06 1.4E-10 63.4 8.8 74 14-98 15-88 (93)
115 2io0_B Small ubiquitin-related 98.2 4.1E-06 1.4E-10 63.3 8.5 74 15-99 4-77 (91)
116 1wz0_A Ubiquitin-like protein 98.2 5.6E-06 1.9E-10 64.1 7.8 74 14-98 22-95 (104)
117 2eke_C Ubiquitin-like protein 98.1 1.3E-05 4.6E-10 62.3 8.8 76 11-98 26-101 (106)
118 2k8h_A Small ubiquitin protein 98.0 8.3E-06 2.8E-10 63.8 5.7 76 13-99 23-98 (110)
119 4efo_A Serine/threonine-protei 97.5 0.00019 6.6E-09 54.6 6.8 65 17-89 13-77 (94)
120 3kyd_D Small ubiquitin-related 97.4 0.00063 2.2E-08 53.6 8.8 74 14-98 38-111 (115)
121 3pge_A SUMO-modified prolifera 97.4 0.00047 1.6E-08 59.2 8.5 76 12-99 25-100 (200)
122 2pjh_A Protein NPL4, nuclear p 97.4 6.6E-05 2.3E-09 55.2 2.0 75 17-98 5-79 (80)
123 3tix_A Ubiquitin-like protein 97.2 0.00073 2.5E-08 57.9 6.9 77 12-100 53-129 (207)
124 3jyu_A Ubiquitin carboxyl-term 96.6 0.0071 2.4E-07 52.5 8.3 65 34-99 155-220 (231)
125 3goe_A DNA repair protein RAD6 96.4 0.023 8E-07 41.8 9.0 71 16-97 9-80 (82)
126 4a3p_A Ubiquitin carboxyl-term 96.2 0.0078 2.7E-07 51.7 6.5 64 34-98 143-207 (217)
127 3v7o_A Minor nucleoprotein VP3 96.0 0.0011 3.8E-08 57.5 0.0 78 10-99 15-92 (227)
128 2bps_A YUKD protein; ubiquitin 95.8 0.016 5.4E-07 42.8 5.6 59 33-96 19-80 (81)
129 3uf8_A Ubiquitin-like protein 95.7 0.034 1.2E-06 47.4 8.3 76 13-100 18-93 (209)
130 2jxx_A Nfatc2-interacting prot 95.4 0.057 1.9E-06 41.0 7.6 77 11-97 20-96 (97)
131 1vd2_A Protein kinase C, IOTA 95.4 0.037 1.3E-06 41.5 6.4 79 14-98 4-88 (89)
132 2r2o_A Plexin-B1; effector dom 95.0 0.14 4.8E-06 41.3 8.9 66 34-99 44-128 (138)
133 3qx1_A FAS-associated factor 1 94.9 0.24 8.3E-06 35.8 9.4 79 13-98 4-82 (84)
134 3ix6_A TS, tsase, thymidylate 94.5 0.0063 2.1E-07 56.5 0.0 77 11-99 16-92 (360)
135 1oey_A P67-PHOX, neutrophil cy 94.5 0.066 2.3E-06 39.6 5.4 49 17-71 6-54 (83)
136 4da1_A Protein phosphatase 1K, 93.2 0.016 5.6E-07 53.4 0.0 76 12-99 26-101 (389)
137 3h6n_A Plexin-D1; structural g 93.1 0.46 1.6E-05 37.8 8.3 65 34-99 20-104 (127)
138 1pqs_A Cell division control p 92.4 0.12 4.2E-06 37.6 3.8 46 34-79 5-55 (77)
139 1wj4_A KIAA0794 protein; UBX d 91.8 0.73 2.5E-05 36.1 8.0 82 10-98 37-118 (124)
140 2dzk_A UBX domain-containing p 91.6 0.88 3E-05 34.7 8.1 82 13-100 10-91 (109)
141 4e74_A Plexin-A4; RBD, structu 91.5 0.29 1E-05 38.4 5.4 65 34-98 30-113 (117)
142 3kuz_A Plexin-C1; structural g 91.2 0.49 1.7E-05 37.6 6.4 65 34-98 42-125 (126)
143 4e71_A Plexin-B2, MM1; transme 91.1 1.1 3.8E-05 34.8 8.2 63 34-98 27-109 (111)
144 2kvr_A Ubiquitin carboxyl-term 90.6 0.23 7.7E-06 39.5 3.9 34 34-67 59-92 (130)
145 1q1o_A Cell division control p 90.3 0.35 1.2E-05 36.8 4.6 41 34-74 26-71 (98)
146 3ivf_A Talin-1; FERM domain, c 87.9 0.82 2.8E-05 41.5 6.2 63 34-97 16-82 (371)
147 2cr5_A Reproduction 8; UBX dom 87.6 1.8 6.3E-05 32.8 7.1 78 14-100 21-99 (109)
148 2l76_A Nfatc2-interacting prot 86.8 1.8 6.1E-05 32.7 6.4 73 14-98 19-91 (95)
149 2kc2_A Talin-1, F1; FERM, adhe 81.5 1.8 6.3E-05 34.2 4.7 77 19-100 14-123 (128)
150 1ip9_A BEM1 protein; ubiquitin 80.7 6.8 0.00023 28.9 7.2 46 15-67 11-56 (85)
151 3hm6_X Plexin-B1; structural g 78.3 9.6 0.00033 37.6 9.4 65 34-98 277-360 (644)
152 2ylm_A Ubiquitin carboxyl-term 78.0 1.7 5.8E-05 41.9 4.1 34 34-67 39-72 (530)
153 3ig3_A Plxna3 protein; plexin 76.6 14 0.00049 36.3 10.2 66 34-99 250-334 (627)
154 1s3s_G P47 protein; AAA ATPase 76.3 3 0.0001 32.5 4.5 77 11-95 47-124 (127)
155 1wmh_B Partitioning defective- 76.2 5 0.00017 29.6 5.3 52 18-74 6-61 (86)
156 2ktr_A Sequestosome-1; autopha 74.9 2.1 7.2E-05 33.5 3.1 34 41-74 57-91 (117)
157 2kkc_A Sequestosome-1; P62, PB 72.1 2.1 7.3E-05 32.6 2.5 34 41-74 42-76 (102)
158 2bkf_A Zinc-finger protein NBR 71.1 11 0.00036 28.0 6.0 55 15-74 5-59 (87)
159 2al3_A TUG long isoform; TUG U 66.1 7.8 0.00027 28.8 4.4 76 13-100 7-82 (90)
160 2daj_A KIAA0977 protein, COBL- 64.4 16 0.00054 27.1 5.7 75 15-100 9-83 (91)
161 3onh_A Ubiquitin-activating en 63.9 23 0.0008 27.9 7.0 64 34-100 9-80 (127)
162 1ryj_A Unknown; beta/alpha pro 61.9 19 0.00065 24.6 5.7 49 34-98 17-65 (70)
163 1wj6_A KIAA0049 protein, RSGI 61.5 13 0.00046 28.2 5.0 55 15-74 13-67 (101)
164 4eut_A Serine/threonine-protei 56.7 15 0.00052 32.6 5.5 33 34-66 325-357 (396)
165 1f0z_A THis protein; ubiquitin 54.9 15 0.00051 24.8 4.0 53 34-98 9-61 (66)
166 1tyg_B YJBS; alpha beta barrel 52.8 19 0.00065 26.3 4.5 53 34-98 29-82 (87)
167 3qa8_A MGC80376 protein; kinas 47.8 12 0.00041 37.1 3.5 33 34-66 325-357 (676)
168 2cu3_A Unknown function protei 46.3 30 0.001 23.1 4.4 52 34-98 8-59 (64)
169 3pie_A 5'->3' exoribonuclease 44.6 23 0.00079 37.4 5.2 64 160-231 1063-1132(1155)
170 2c7h_A RBBP6, retinoblastoma-b 37.7 68 0.0023 23.5 5.4 38 34-71 21-59 (86)
171 2ylm_A Ubiquitin carboxyl-term 36.0 84 0.0029 30.0 7.3 84 12-99 126-217 (530)
172 3lnn_A Membrane fusion protein 32.7 1.5E+02 0.005 25.8 7.9 73 159-232 218-296 (359)
173 2kss_A Carotenogenesis protein 32.0 8.8 0.0003 28.4 -0.2 39 160-203 35-75 (106)
174 2kl0_A Putative thiamin biosyn 29.6 54 0.0018 22.7 3.7 52 34-98 9-60 (73)
175 1vjk_A Molybdopterin convertin 29.3 1.4E+02 0.0047 21.4 6.0 60 34-98 30-93 (98)
176 2hj1_A Hypothetical protein; s 28.2 1.3E+02 0.0044 22.2 5.7 70 15-99 11-85 (97)
177 1at0_A 17-hedgehog; developmen 27.8 66 0.0022 25.1 4.3 75 159-235 17-96 (145)
178 3cnr_A Type IV fimbriae assemb 27.3 74 0.0025 24.2 4.4 40 160-201 39-89 (117)
179 1y8x_B Ubiquitin-activating en 25.8 32 0.0011 25.7 1.9 66 34-101 8-86 (98)
180 3po0_A Small archaeal modifier 25.4 1.5E+02 0.005 20.6 5.5 21 34-54 21-41 (89)
181 2e6z_A Transcription elongatio 24.6 64 0.0022 21.5 3.1 24 160-183 5-30 (59)
182 3rpf_C Molybdopterin convertin 23.5 1.7E+02 0.0059 19.6 6.9 53 34-98 15-69 (74)
183 1rws_A Hypothetical protein PF 23.0 20 0.00069 25.0 0.3 48 34-97 24-71 (77)
184 3fpp_A Macrolide-specific effl 22.6 1.5E+02 0.005 25.6 6.0 71 160-231 204-284 (341)
185 2g1e_A Hypothetical protein TA 20.3 2.1E+02 0.0073 19.5 6.6 57 34-98 18-85 (90)
No 1
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=100.00 E-value=4.3e-35 Score=226.05 Aligned_cols=88 Identities=52% Similarity=1.026 Sum_probs=79.8
Q ss_pred hhhhcCCCccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905 156 EENILKDIEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI 233 (248)
Q Consensus 156 ~~~~~~~~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~ 233 (248)
++.++..+.||+||+|. +++.++|||||+|++++++|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++
T Consensus 5 ~~~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~ 84 (95)
T 1lpl_A 5 NEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKV 84 (95)
T ss_dssp HHHHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEE
T ss_pred hhhhhhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceE
Confidence 33455679999999997 3336999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCc
Q psy13905 234 GDFPVLDPFDE 244 (248)
Q Consensus 234 g~fp~~d~~de 244 (248)
|+||++| +||
T Consensus 85 gdfp~~d-~~~ 94 (95)
T 1lpl_A 85 GDFPELS-IDE 94 (95)
T ss_dssp SCCCCCC-CSC
T ss_pred CCCCCCC-ccc
Confidence 9999988 444
No 2
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=100.00 E-value=6.9e-34 Score=214.19 Aligned_cols=81 Identities=44% Similarity=0.918 Sum_probs=73.8
Q ss_pred cCCCccCCEEEEcCCCCceeEEEEecccC-CCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCC
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTVMFVGETK-FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPV 238 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~-~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~ 238 (248)
+..|+||+||+|... .++|||||+|+++ +++|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++|||||
T Consensus 3 m~~i~vG~Rv~v~~~-~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd~Pp 81 (84)
T 4b6m_A 3 METIHVGDRCLCRPG-DRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGDFPP 81 (84)
T ss_dssp --CCCTTCEEEETTT-TEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECCCCC
T ss_pred ccCcccCCEEEEcCC-CeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECCcCC
Confidence 457999999999754 5899999999975 58899999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy13905 239 LDP 241 (248)
Q Consensus 239 ~d~ 241 (248)
.++
T Consensus 82 e~f 84 (84)
T 4b6m_A 82 EVF 84 (84)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 3
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=100.00 E-value=6.5e-34 Score=225.61 Aligned_cols=88 Identities=48% Similarity=0.910 Sum_probs=80.7
Q ss_pred hhhhhhhcCCCccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCC
Q psy13905 153 KCLEENILKDIEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGR 230 (248)
Q Consensus 153 ~~~~~~~~~~~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~ 230 (248)
+++++..+..+.||+||.|. +.+.++|||||||++++.+|.|+|||||+|.||||||++|+|||+|+|+||+||||++
T Consensus 23 ~~~~~~~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~ 102 (113)
T 1whg_A 23 LSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSA 102 (113)
T ss_dssp THHHHHHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGG
T ss_pred hhHhhhhhhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHH
Confidence 34555677889999999996 3346999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCC
Q psy13905 231 LTIGDFPVLD 240 (248)
Q Consensus 231 v~~g~fp~~d 240 (248)
|++||||+++
T Consensus 103 v~~gdfp~~~ 112 (113)
T 1whg_A 103 VTVGDSGPSS 112 (113)
T ss_dssp EEEEECCSSC
T ss_pred eEECCCCCCC
Confidence 9999999986
No 4
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.97 E-value=4.3e-32 Score=217.32 Aligned_cols=113 Identities=24% Similarity=0.390 Sum_probs=73.1
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+.|+|.|+++...+.. +++|++++||++||+||+.++||||++|||+|.+.+|+.+..|++|+++|++|+|++|++|
T Consensus 5 ~~v~l~V~~~~~~~~~---e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~i 81 (122)
T 1t0y_A 5 EVYDLEITTNATDFPM---EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 81 (122)
T ss_dssp CEEEEEEEESSCCSCE---EEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEE
T ss_pred CEEEEEEEECCCCccE---EEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEE
Confidence 4799999987664335 9999999999999999999999999999999996556765567789999999999999999
Q ss_pred EEEeCC-----CCCCCCCceeeecCCHHHHhhhhHHHHHHHHH
Q psy13905 95 FVEGNY-----LTDGLESSETKYVLPEEKYKEHKENLKNFMMK 132 (248)
Q Consensus 95 hVvD~~-----l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~ 132 (248)
||+|++ |+| +|+|+||+||+|+|++|+||||+|||+
T Consensus 82 hvvd~~p~~~~~~d--~s~v~ky~~~~e~Y~~r~~tv~~~k~~ 122 (122)
T 1t0y_A 82 HAVDVTGGNEDFKD--ESMVEKYEMSDDTYGKRTDSVRAWKKK 122 (122)
T ss_dssp EEEECTTCCCC--------------------------------
T ss_pred EEEeCCCCCCCccc--cccceeeecCHHHHhcchhHHHHHhhC
Confidence 999965 888 999999999999999999999999985
No 5
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.97 E-value=3.7e-31 Score=202.10 Aligned_cols=78 Identities=41% Similarity=0.913 Sum_probs=73.0
Q ss_pred CCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCCCCC
Q psy13905 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDP 241 (248)
Q Consensus 162 ~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~d~ 241 (248)
+++||+||.|.+ .++|||||+|++++.+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++++||++.+
T Consensus 1 ~l~vG~rV~V~g--~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~~~p 78 (90)
T 2e3h_A 1 ELKIGDRVLVGG--TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP 78 (90)
T ss_dssp CCCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCCC--
T ss_pred CCcCCCEEEECC--CCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCCCCc
Confidence 478999999976 489999999999999999999999999999999999999999999999999999999999999876
No 6
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=6e-30 Score=199.31 Aligned_cols=78 Identities=37% Similarity=0.736 Sum_probs=73.2
Q ss_pred hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc-cCCCC
Q psy13905 159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT-IGDFP 237 (248)
Q Consensus 159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~fp 237 (248)
++..++||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+ +++||
T Consensus 22 ~~~~~~VG~RV~V~g--~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p 99 (102)
T 1whh_A 22 EGAKAEVGDQVLVAG--QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP 99 (102)
T ss_dssp SCCSSCTTSEEEETT--TEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred ccccCcCCCEEEECC--CcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCC
Confidence 456799999999976 489999999999999999999999999999999999999999999999999999998 57898
Q ss_pred C
Q psy13905 238 V 238 (248)
Q Consensus 238 ~ 238 (248)
+
T Consensus 100 ~ 100 (102)
T 1whh_A 100 S 100 (102)
T ss_dssp T
T ss_pred C
Confidence 6
No 7
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.96 E-value=1.3e-29 Score=186.11 Aligned_cols=69 Identities=48% Similarity=0.983 Sum_probs=65.8
Q ss_pred CCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232 (248)
Q Consensus 162 ~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 232 (248)
.|+||+||+|.+ .++|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|.
T Consensus 2 ~~~vG~rv~v~g--~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvs 70 (72)
T 3rdv_A 2 DFRVGERVWVNG--NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 70 (72)
T ss_dssp CCCTTCEEEETT--TEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEE
T ss_pred CcccCCEEEECC--CCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHcc
Confidence 589999999986 379999999999999999999999999999999999999999999999999999985
No 8
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=1.8e-29 Score=212.13 Aligned_cols=81 Identities=40% Similarity=0.860 Sum_probs=76.5
Q ss_pred hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCC
Q psy13905 159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPV 238 (248)
Q Consensus 159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~ 238 (248)
....|+||+||+|.+ .++|+|||||++++.+|.|+|||||+|.|||||+|+|+|||+|+|+||+||||.+|.+++||+
T Consensus 35 ~~~~l~VG~RV~V~g--~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~dfP~ 112 (172)
T 2cp6_A 35 GERELKIGDRVLVGG--TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPS 112 (172)
T ss_dssp CSSCCCSSCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSS
T ss_pred CCccCccCCEEEECC--CceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECCcCC
Confidence 345799999999976 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy13905 239 LDP 241 (248)
Q Consensus 239 ~d~ 241 (248)
+.+
T Consensus 113 ~~p 115 (172)
T 2cp6_A 113 TTP 115 (172)
T ss_dssp CCS
T ss_pred CCc
Confidence 876
No 9
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=2.5e-29 Score=190.49 Aligned_cols=75 Identities=44% Similarity=0.868 Sum_probs=69.0
Q ss_pred CCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC-CCCC
Q psy13905 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG-DFPV 238 (248)
Q Consensus 162 ~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~ 238 (248)
.|+||+||.|.+ .++|||||+|++++.+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|... .|++
T Consensus 2 ~~~vG~rv~v~g--~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~ 77 (86)
T 2e3i_A 2 DFRVGERVWVNG--NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAED 77 (86)
T ss_dssp CCCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC--
T ss_pred CccCCCEEEECC--CcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhh
Confidence 589999999976 48999999999999999999999999999999999999999999999999999999876 4654
No 10
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.96 E-value=2.2e-29 Score=193.45 Aligned_cols=76 Identities=42% Similarity=0.770 Sum_probs=69.2
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG 234 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 234 (248)
..+..+.||+||.|.+. .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.
T Consensus 8 ~~~~~~~vG~rv~v~~~-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~ 83 (93)
T 1txq_A 8 ASARPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF 83 (93)
T ss_dssp ---CCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEEC
T ss_pred cccccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEc
Confidence 44567999999999753 58999999999999999999999999999999999999999999999999999999875
No 11
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.96 E-value=2.4e-29 Score=193.80 Aligned_cols=77 Identities=45% Similarity=0.899 Sum_probs=71.6
Q ss_pred hhhhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG 234 (248)
Q Consensus 156 ~~~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 234 (248)
.+..+..++||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|..+
T Consensus 12 ~~~~~~~~~vG~rV~V~g--~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 12 GDDFLGDFVVGERVWVNG--VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQ 88 (95)
T ss_dssp CBSSCCSCCTTCEEEGGG--SCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSS
T ss_pred hhhhhhcCcCCCEEEECC--ceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccC
Confidence 345667899999999986 48999999999999999999999999999999999999999999999999999999865
No 12
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=5.5e-29 Score=194.67 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=75.3
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEE-cCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC-C
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKL-DEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG-D 235 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVel-Dep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~ 235 (248)
.....|.||+||+|.+...++|||||||++++++|.|+|||| |+|.|||||+++|+|||+|+|+||+||||++|..+ .
T Consensus 13 ~~~~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~r 92 (104)
T 1ixd_A 13 GNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 92 (104)
T ss_dssp TSSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCT
T ss_pred CCCcccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceeccc
Confidence 345679999999998533589999999999999999999999 89999999999999999999999999999999988 4
Q ss_pred CCCCC
Q psy13905 236 FPVLD 240 (248)
Q Consensus 236 fp~~d 240 (248)
|..++
T Consensus 93 f~~~~ 97 (104)
T 1ixd_A 93 FASLQ 97 (104)
T ss_dssp TCCCC
T ss_pred cccCC
Confidence 88765
No 13
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=8.9e-29 Score=186.74 Aligned_cols=74 Identities=36% Similarity=0.801 Sum_probs=68.7
Q ss_pred cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCC
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGD 235 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~ 235 (248)
...+.||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|..-.
T Consensus 5 ~~~~~vG~rv~v~g--~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~ 78 (84)
T 2cp3_A 5 SSGLRLGDRVLVGG--TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIG 78 (84)
T ss_dssp SCSCCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECC
T ss_pred ccccccCCEEEECC--CCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcc
Confidence 35699999999976 489999999999999999999999999999999999999999999999999999997543
No 14
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=5.1e-29 Score=190.61 Aligned_cols=77 Identities=38% Similarity=0.767 Sum_probs=70.8
Q ss_pred hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCC
Q psy13905 159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDF 236 (248)
Q Consensus 159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f 236 (248)
....++||+||+|.+. .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++-..
T Consensus 9 ~~~~~~vG~rV~V~~~-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~ 85 (91)
T 1whk_A 9 GTVKLHEGSQVLLTSS-NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGI 85 (91)
T ss_dssp CCCCCCSSCEEEESSS-CCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCC
T ss_pred CCccccCCCEEEECCC-CeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCC
Confidence 4567999999999753 5899999999999999999999999999999999999999999999999999999986543
No 15
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=7.4e-29 Score=191.29 Aligned_cols=79 Identities=30% Similarity=0.482 Sum_probs=71.0
Q ss_pred cCCCccCCEEEEcCC--C-CceeEEEEecccC---CCCceEEEEEEcCC---CCCCceeEcCeEeeecCCCceeeEcCCC
Q psy13905 160 LKDIEVGKRCKINDS--D-VRFGTVMFVGETK---FSSGVWVGVKLDEP---FGKNNGTVKDVKYFECEENYGMFVKPGR 230 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~--~-~~~G~vryvG~~~---~~~g~wvGVelDep---~GkndGs~~G~rYF~c~~~~G~Fv~~~~ 230 (248)
+..+.||+||+|... + .++|||||+|+++ +.+|.|+|||||+| .|||||+++|+|||+|+|+||+||||++
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~~ 84 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDK 84 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGG
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHHH
Confidence 467999999999632 1 4899999999998 79999999999999 8999999999999999999999999999
Q ss_pred CccCC-CCC
Q psy13905 231 LTIGD-FPV 238 (248)
Q Consensus 231 v~~g~-fp~ 238 (248)
|++.+ .|.
T Consensus 85 v~~~~~~p~ 93 (95)
T 1whl_A 85 LELIESGPS 93 (95)
T ss_dssp EEECCSCSC
T ss_pred eEEcCcCCC
Confidence 99875 553
No 16
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.1e-28 Score=197.52 Aligned_cols=77 Identities=43% Similarity=0.869 Sum_probs=71.5
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCC
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp 237 (248)
..+..+.||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|. +||
T Consensus 27 ~~~~~l~VG~RV~V~g--~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~--~~p 102 (122)
T 2coz_A 27 DELFDFHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKIS--HIP 102 (122)
T ss_dssp CSCSSCCTTEEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEE--CCC
T ss_pred cccccCcCCCEEEECC--CcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCc--cCC
Confidence 4566799999999976 489999999999999999999999999999999999999999999999999999997 566
Q ss_pred C
Q psy13905 238 V 238 (248)
Q Consensus 238 ~ 238 (248)
+
T Consensus 103 e 103 (122)
T 2coz_A 103 E 103 (122)
T ss_dssp T
T ss_pred c
Confidence 5
No 17
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.3e-28 Score=194.70 Aligned_cols=76 Identities=42% Similarity=0.783 Sum_probs=70.8
Q ss_pred hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCC
Q psy13905 159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGD 235 (248)
Q Consensus 159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~ 235 (248)
.+..+.||+||.|.+. .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.+
T Consensus 30 ~~~~l~VG~RV~V~~~-g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~ 105 (112)
T 2coy_A 30 SARPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE 105 (112)
T ss_dssp SCCCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECC
T ss_pred ccccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcC
Confidence 4457999999999753 589999999999999999999999999999999999999999999999999999999764
No 18
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=6.9e-29 Score=191.61 Aligned_cols=73 Identities=38% Similarity=0.872 Sum_probs=67.1
Q ss_pred cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG 234 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 234 (248)
+..++||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus 8 ~~~~~vG~rV~V~g--~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~ 80 (96)
T 2z0w_A 8 EGELRLGERVLVVG--QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRV 80 (96)
T ss_dssp ---CCTTCCCCCCC--CCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCT
T ss_pred cccCCCCCEEEECC--CcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceec
Confidence 34699999999976 48999999999999999999999999999999999999999999999999999999864
No 19
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.2e-28 Score=189.93 Aligned_cols=72 Identities=40% Similarity=0.824 Sum_probs=67.9
Q ss_pred CCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG 234 (248)
Q Consensus 161 ~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 234 (248)
..++||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus 15 ~~~~vG~RV~V~g--~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~ 86 (95)
T 2cp0_A 15 LGLRLGDRVLLDG--QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA 86 (95)
T ss_dssp HTCCTTCEEEETT--TEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred cCCCCCCEEEECC--CCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecC
Confidence 4699999999976 48999999999999999999999999999999999999999999999999999999753
No 20
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=2.4e-28 Score=190.26 Aligned_cols=77 Identities=40% Similarity=0.782 Sum_probs=70.4
Q ss_pred cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC-CCCC
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG-DFPV 238 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~ 238 (248)
+..++||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|..- ++++
T Consensus 22 ~~~~~vG~RV~V~g--~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~ 99 (102)
T 1whj_A 22 SLGLKLGDRVVIAG--QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP 99 (102)
T ss_dssp HHTCCTTCEEEETT--TEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred hhcCcCCCEEEECC--CCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence 34699999999976 48999999999999999999999999999999999999999999999999999999854 4544
No 21
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=6.5e-28 Score=197.15 Aligned_cols=77 Identities=44% Similarity=0.907 Sum_probs=71.6
Q ss_pred hhhhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG 234 (248)
Q Consensus 156 ~~~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 234 (248)
.++.+..|.||+||+|.+ .++|+|||+|++++.+|.|+|||||+|.|||||+|+|+|||+|+|+||+|||+++|..+
T Consensus 58 ~~~~~~~l~VG~RV~V~G--~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~ 134 (141)
T 2cp5_A 58 QEEFVDDFRVGERVWVNG--NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRK 134 (141)
T ss_dssp CCCCCCCCCTTCEEEETT--SCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESS
T ss_pred hhhhhhcCcCCCEEEECC--CcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeec
Confidence 335567899999999986 48999999999999999999999999999999999999999999999999999999876
No 22
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=6.9e-28 Score=187.07 Aligned_cols=78 Identities=35% Similarity=0.753 Sum_probs=70.9
Q ss_pred hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCC-C
Q psy13905 158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGD-F 236 (248)
Q Consensus 158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~-f 236 (248)
.....|+||+||.|.+ .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+.-. .
T Consensus 19 ~~~~~l~vG~rV~V~g--~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~~ 96 (100)
T 2cow_A 19 EVPEWLREGEFVTVGA--HKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSG 96 (100)
T ss_dssp CCCSSCCTTCEEECSS--SCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCCC
T ss_pred cCCccccCCCEEEECC--CcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCCC
Confidence 3345689999999975 489999999999999999999999999999999999999999999999999999998653 4
Q ss_pred C
Q psy13905 237 P 237 (248)
Q Consensus 237 p 237 (248)
|
T Consensus 97 p 97 (100)
T 2cow_A 97 P 97 (100)
T ss_dssp S
T ss_pred C
Confidence 4
No 23
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=3e-27 Score=180.08 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=65.6
Q ss_pred hcCCCccCCEEEEcCC-CCceeEEEEecccCCC--CceEEEEEEcCCCCCCceeEcCeEee-ecCCCceeeEcCCCC
Q psy13905 159 ILKDIEVGKRCKINDS-DVRFGTVMFVGETKFS--SGVWVGVKLDEPFGKNNGTVKDVKYF-ECEENYGMFVKPGRL 231 (248)
Q Consensus 159 ~~~~~~vG~Rv~v~~~-~~~~G~vryvG~~~~~--~g~wvGVelDep~GkndGs~~G~rYF-~c~~~~G~Fv~~~~v 231 (248)
++..|+||+||+|... ..+||||||+|++++. +|+|||||||||.|||||+++|+||| .|+++||+||++..+
T Consensus 6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~ 82 (92)
T 1whm_A 6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDI 82 (92)
T ss_dssp CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGE
T ss_pred cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccC
Confidence 4557999999999733 2599999999999874 69999999999999999999999999 999999999998766
No 24
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.88 E-value=1.5e-22 Score=152.93 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=75.2
Q ss_pred ceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 15 GTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 15 ~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
++|+|.||++... +.. |+||++++||.+||+||+.++||||++|||+|++.++.+...+++|+++|++|+|++|++
T Consensus 1 s~V~v~iths~~~~~~~---E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ 77 (86)
T 4b6w_A 1 SVVKVSLTHSASRMRVP---EKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFV 77 (86)
T ss_dssp CEEEEEEEETTCSCCEE---EEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCE
T ss_pred CEEEEEEEEcCCCCeEE---EEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCE
Confidence 5799999976544 445 999999999999999999999999999999999888887777889999999999999999
Q ss_pred EEEEeCC
Q psy13905 94 LFVEGNY 100 (248)
Q Consensus 94 IhVvD~~ 100 (248)
|||+|++
T Consensus 78 ihlvd~~ 84 (86)
T 4b6w_A 78 IHVVDLQ 84 (86)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999974
No 25
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.83 E-value=9.9e-21 Score=146.15 Aligned_cols=86 Identities=24% Similarity=0.304 Sum_probs=75.9
Q ss_pred CCCceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d 90 (248)
-++++|+|+||++... +.. |++|++++||++||+||+.++||||++|||+|++.+|+.+..|++|+++|++|+|++
T Consensus 10 ~~~~~v~l~It~s~~~~~~~---e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~ 86 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSA---DARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFD 86 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCE---EEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCS
T ss_pred CCCceEEEEEEECCCCceEE---EEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCC
Confidence 4778999999986653 335 999999999999999999999999999999999665666566778999999999999
Q ss_pred CcEEEEEeCC
Q psy13905 91 EMTLFVEGNY 100 (248)
Q Consensus 91 G~~IhVvD~~ 100 (248)
|++|||+|++
T Consensus 87 g~~Ihlvd~~ 96 (97)
T 2kj6_A 87 GFRLHIIDLD 96 (97)
T ss_dssp CCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999999975
No 26
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.77 E-value=7.9e-19 Score=134.86 Aligned_cols=83 Identities=27% Similarity=0.423 Sum_probs=72.2
Q ss_pred CCceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 13 GGGTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
..+.|+|+|+++..+ +.. ++++++++||++||+||+.++||||++|||+|.+ +|+.+..|++|+++|++|+|++|
T Consensus 12 ~~~~v~l~It~s~~~~~~~---~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAF---EVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp CCCEEEEEEEESSCSCEEE---EEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSS
T ss_pred CCCeEEEEEEECCCCceEE---EEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCC
Confidence 357899999987653 335 9999999999999999999999999999999986 35554567789999999999999
Q ss_pred cEEEEEeC
Q psy13905 92 MTLFVEGN 99 (248)
Q Consensus 92 ~~IhVvD~ 99 (248)
++|||+|+
T Consensus 88 stihlvD~ 95 (95)
T 2kjr_A 88 LRLHVVDS 95 (95)
T ss_dssp CEEEEEEC
T ss_pred CEEEEECC
Confidence 99999994
No 27
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=7e-18 Score=129.04 Aligned_cols=84 Identities=24% Similarity=0.172 Sum_probs=71.6
Q ss_pred CceEEEEEEeC--CCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCC-CceeeccCCCCcccCCCCCCC
Q psy13905 14 GGTVELYITNS--KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRN-HDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 14 ~~~V~v~ItS~--~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~-g~~i~~L~~d~~~L~~y~i~d 90 (248)
.+.|+|.|+++ ...... |++|++++||++||.||+.+||+||..|+|+|++.. +.....|++|.++|++|++++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~---e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQIL---EKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp SCEEEEEEEESSCSSSCCE---EEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred CccEEEEEEecCCCCCcEE---EEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 45799999964 444345 999999999999999999999999999999999642 223456889999999999999
Q ss_pred CcEEEEEeCC
Q psy13905 91 EMTLFVEGNY 100 (248)
Q Consensus 91 G~~IhVvD~~ 100 (248)
|++|||+|++
T Consensus 84 G~~I~V~d~~ 93 (97)
T 1wjn_A 84 GDCLLVRWSG 93 (97)
T ss_dssp TCEEEEECCS
T ss_pred CCEEEEEecC
Confidence 9999999964
No 28
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=8.6e-18 Score=128.22 Aligned_cols=83 Identities=33% Similarity=0.502 Sum_probs=72.7
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+.|+|.|+++...+.. ++++++++||.+||+||+.++||||++|||+|.+.+|+.+..|++|+++|++|++++|++|
T Consensus 6 ~~v~l~I~~~~~~~~~---~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l 82 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI 82 (95)
T ss_dssp CCEEEEEEETTSSSCE---EEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred cEEEEEEEECCCCeeE---EEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence 4699999987664335 9999999999999999999999999999999986556665557789999999999999999
Q ss_pred EEEeCC
Q psy13905 95 FVEGNY 100 (248)
Q Consensus 95 hVvD~~ 100 (248)
||+|++
T Consensus 83 ~v~d~~ 88 (95)
T 1v6e_A 83 HVIDHS 88 (95)
T ss_dssp EEBCCS
T ss_pred EEEECC
Confidence 999965
No 29
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=4e-13 Score=101.10 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=65.4
Q ss_pred CceEEEEEEeCCCCcccccceEEecCC-----CCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLN-----NTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV 88 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~-----~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i 88 (248)
...++|+|++.... . +++++++ +||.+||++|+..+|+||+.|||+|. |+. |.+++.+|++|++
T Consensus 5 ~~~~~v~Vk~~~~~--~---~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~---Gk~---L~D~~~~L~~~~i 73 (92)
T 1wxv_A 5 SSGLTVTVTHSNEK--H---DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK---GKS---LKEMETPLSALGI 73 (92)
T ss_dssp CSSEEEEEECSSSE--E---EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET---TEE---ECCSSSBHHHHTC
T ss_pred CCeEEEEEEECCEE--E---EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC---Cee---cCCCcccHHHCCC
Confidence 35789999986444 4 7899996 99999999999999999999999986 766 5566789999999
Q ss_pred CCCcEEEEEeCC
Q psy13905 89 ENEMTLFVEGNY 100 (248)
Q Consensus 89 ~dG~~IhVvD~~ 100 (248)
.+|++|||+...
T Consensus 74 ~~g~~i~l~~~~ 85 (92)
T 1wxv_A 74 QDGCRVMLIGKK 85 (92)
T ss_dssp CSSEEEEEESCC
T ss_pred CCCCEEEEEecC
Confidence 999999999864
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.37 E-value=1.4e-12 Score=94.02 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=61.6
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
++|+|++.... . +.++++++||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|++++|++|||
T Consensus 5 m~i~vk~~g~~--~---~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~~i~l 72 (77)
T 2bwf_A 5 LNIHIKSGQDK--W---EVNVAPESTVLQFKEAINKANGIPVANQRLIYS---GKI---L-KDDQTVESYHIQDGHSVHL 72 (77)
T ss_dssp EEEEEEETTEE--E---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC---CeE---c-CCCCCHHHcCCCCCCEEEE
Confidence 78888883332 3 789999999999999999999999999999986 665 4 5679999999999999999
Q ss_pred EeC
Q psy13905 97 EGN 99 (248)
Q Consensus 97 vD~ 99 (248)
++.
T Consensus 73 ~~~ 75 (77)
T 2bwf_A 73 VKS 75 (77)
T ss_dssp EEC
T ss_pred EEc
Confidence 875
No 31
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.35 E-value=1.6e-12 Score=99.44 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=63.0
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+.+++.|+|....-.. . ...+.|+.||.+||++|+..+||||++|||++. |+. .+|..+|++|+|++|+
T Consensus 18 ~~~mIqI~Vk~~~Gkk-~---~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~---Gk~----LkD~~TL~dY~I~dgs 86 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKK-V---RVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG---GSV----LKDHISLEDYEVHDQT 86 (93)
T ss_dssp --CEEEEEEECTTSCE-E---EEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE----CCTTSBTGGGTCCTTC
T ss_pred CCceEEEEEECCCCCE-E---EEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC---CEE----ccCcCCHHHcCCCCCC
Confidence 4568899999754431 3 699999999999999999999999999999985 776 4789999999999999
Q ss_pred EEEEE
Q psy13905 93 TLFVE 97 (248)
Q Consensus 93 ~IhVv 97 (248)
+||+.
T Consensus 87 tLhL~ 91 (93)
T 3plu_A 87 NLELY 91 (93)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99974
No 32
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=93.30 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=61.9
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+.+.|+|.+..... . ...++++.||.+||++|+..+|+||+.|||++. |+. | +|+.+|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---G~~---L-~d~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRS-S---TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKP---L-EDQLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCE-E---EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCE-E---EEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEE
Confidence 45688888754331 3 689999999999999999999999999999986 766 4 67899999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
|++=
T Consensus 72 ~l~~ 75 (79)
T 3phx_B 72 FMNL 75 (79)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 33
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.33 E-value=2e-12 Score=98.39 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=64.3
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCC-cccCCCCCCCC
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNS-MLLGQYPVENE 91 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~-~~L~~y~i~dG 91 (248)
....+.|+|++.... . +.++++++||.+||++|+..+|+||++|||++. |+. | .|+ .+|++|+|++|
T Consensus 12 ~~~~~~I~Vk~~~~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~~tL~~ygI~~g 79 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQ--F---TVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS---GIE---L-ADDYRNLNEYGITEF 79 (94)
T ss_dssp SSCCEEEEEECSSCE--E---EEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET---TEE---E-CCTTSBHHHHTCCTT
T ss_pred CCCCEEEEEEcCCcE--E---EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC---CEE---C-CCCcccHHHCCCCCC
Confidence 345788999975443 4 789999999999999999999999999999986 766 4 456 99999999999
Q ss_pred cEEEEEeC
Q psy13905 92 MTLFVEGN 99 (248)
Q Consensus 92 ~~IhVvD~ 99 (248)
++|||+..
T Consensus 80 stl~lv~r 87 (94)
T 2kan_A 80 SEIVVFLK 87 (94)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999864
No 34
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.8e-12 Score=99.92 Aligned_cols=74 Identities=12% Similarity=0.215 Sum_probs=62.1
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...|+|.|++.... . +.++++++||.+||++|+..+|+||+.|||++. |+. | +|+.+|++|++++|++
T Consensus 26 ~m~i~I~Vk~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~gI~~g~t 93 (101)
T 3m63_B 26 AMSLNIHIKSGQDK--W---EVNVAPESTVLQFKEAINKANGIPVANQRLIYS---GKI---L-KDDQTVESYHIQDGHS 93 (101)
T ss_dssp ---CCEEEECSSCC--C---CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET---TEE---C-CTTSBTTTTTCCTTEE
T ss_pred CcEEEEEEEECCEE--E---EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCcCcHHHCCCCCCCE
Confidence 34578888874444 3 688999999999999999999999999999985 766 4 6789999999999999
Q ss_pred EEEEeC
Q psy13905 94 LFVEGN 99 (248)
Q Consensus 94 IhVvD~ 99 (248)
|||+..
T Consensus 94 I~lv~~ 99 (101)
T 3m63_B 94 VHLVKS 99 (101)
T ss_dssp EEECCC
T ss_pred EEEEeC
Confidence 999875
No 35
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=6.9e-12 Score=90.88 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=60.6
Q ss_pred eEEEEEEeCCCCcccccceEE-ecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 16 TVELYITNSKDKHESCLNLKK-LKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r-~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
.+.|+|.+....... ..+ ++++.||.+||++|+..+|+||+.|+|++. |+. | +|+++|++|++.+|++|
T Consensus 2 ~m~i~Vk~~~g~~~~---~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~---g~~---L-~d~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 2 SMWIQVRTMDGRQTH---TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR---GKQ---M-EDGHTLFDYEVRLNDTI 71 (78)
T ss_dssp CEEEEEEETTSSCEE---EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTTTTTCCTTCEE
T ss_pred cEEEEEEECCCCEEE---EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCCCCHHHcCCCCCCEE
Confidence 467888865433112 577 999999999999999999999999999985 765 4 67899999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
|++-
T Consensus 72 ~l~~ 75 (78)
T 2faz_A 72 QLLV 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 36
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=9e-13 Score=100.39 Aligned_cols=74 Identities=26% Similarity=0.250 Sum_probs=63.5
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...++|+|++.... . +++++++.||.+||++|+..+||||++|||++. |+. | +|. +|++|+|++|++
T Consensus 15 ~~~~~i~Vk~~g~~--~---~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~---Gk~---L-dd~-tL~~~~i~~g~~ 81 (95)
T 1v86_A 15 KELVDLKIIWNKTK--H---DVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK---GLV---P-EDK-TLREIKVTSGAK 81 (95)
T ss_dssp CCCEEEEEEETTEE--E---EEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS---SBC---C-SSS-BHHHHCCCTTEE
T ss_pred CceEEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---Cee---C-CcC-cHHHCCCCCCCE
Confidence 45789999876543 4 799999999999999999999999999999975 665 5 444 999999999999
Q ss_pred EEEEeCC
Q psy13905 94 LFVEGNY 100 (248)
Q Consensus 94 IhVvD~~ 100 (248)
|||+++.
T Consensus 82 i~lv~~~ 88 (95)
T 1v86_A 82 IMVVGST 88 (95)
T ss_dssp EEECCSS
T ss_pred EEEEecc
Confidence 9999864
No 37
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.31 E-value=5.7e-12 Score=93.61 Aligned_cols=74 Identities=11% Similarity=0.157 Sum_probs=61.8
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
...+.+.|+|.+..... . +.+++++.||.+||++|+..+|+||+.|||++. |+. | .|+.+|++|++ +|
T Consensus 13 ~~~~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i-~g 80 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQT-R---TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ---GRV---L-QDDKKLQEYNV-GG 80 (88)
T ss_dssp --CCEEEEEEEETTSCE-E---EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTC-TT
T ss_pred cCCCeEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEE---C-CCCCcHHHcCC-CC
Confidence 44567889998754331 3 689999999999999999999999999999985 766 4 67899999999 89
Q ss_pred cEEEEE
Q psy13905 92 MTLFVE 97 (248)
Q Consensus 92 ~~IhVv 97 (248)
++||++
T Consensus 81 ~~i~lv 86 (88)
T 4eew_A 81 KVIHLV 86 (88)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999987
No 38
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.31 E-value=2.7e-12 Score=95.69 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=62.2
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+..+|+|....... . +.++++++||++||++|+..+|+||++|||++. |+. +.+|+++|++|++++|++|
T Consensus 9 ~~~~i~vk~l~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---lL~D~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 9 SHMKFLVENLNGSS-F---ELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD---GIV---ILREDLTVEQCQIVPTSDI 78 (84)
T ss_dssp CCEEEEEEETTSCE-E---EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE---CCCSSSBHHHHTCCTTSCE
T ss_pred CceEEEEEecCCcE-E---EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CEE---ecCCcCCHHHcCCCCCCEE
Confidence 45688888644331 3 789999999999999999999999999999986 654 2478899999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
||+-
T Consensus 79 ~lv~ 82 (84)
T 2kk8_A 79 QLEV 82 (84)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 39
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=5.3e-12 Score=91.73 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+.+.++|+|++.... .. +.+++++.||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|++.+|+
T Consensus 4 ~~~~m~i~vk~~~g~-~~---~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~ 72 (81)
T 2dzi_A 4 GSSGMQLTVKALQGR-EC---SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK---GKA---L-ADGKRLSDYSIGPNS 72 (81)
T ss_dssp SSSSEEEEEEETTSC-EE---EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET---TEE---C-CTTSBGGGGTCCSSB
T ss_pred CCCcEEEEEEeCCCC-EE---EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC---CeE---C-CCCCcHHHcCCCCCC
Confidence 345788999864333 13 789999999999999999999999999999985 766 4 578999999999999
Q ss_pred EEEEEe
Q psy13905 93 TLFVEG 98 (248)
Q Consensus 93 ~IhVvD 98 (248)
+|||+-
T Consensus 73 ~i~l~~ 78 (81)
T 2dzi_A 73 KLNLVV 78 (81)
T ss_dssp CCEEEC
T ss_pred EEEEEE
Confidence 999873
No 40
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.30 E-value=8.4e-12 Score=93.06 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=63.8
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+-+.+.+.++..... . +.+++++.||.+||++|+..+|+||+.|||++. |+. | +|+.+|++|++.+|+
T Consensus 9 ~~~~~~~~~~~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~ 76 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKS--I---PLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK---GKV---L-VETSTLKQSDVGSGA 76 (85)
T ss_dssp SCCCEEEEEEETTEE--E---EEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET---TEE---C-CTTCBTTTTTCCTTE
T ss_pred cCCcEEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---CeE---C-CCcCCHHHCCCCCCC
Confidence 345667777766554 3 789999999999999999999999999999975 665 4 678999999999999
Q ss_pred EEEEEeC
Q psy13905 93 TLFVEGN 99 (248)
Q Consensus 93 ~IhVvD~ 99 (248)
+|+|+.+
T Consensus 77 ~l~l~~s 83 (85)
T 2kd0_A 77 KLMLMAS 83 (85)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 9999864
No 41
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.29 E-value=9.2e-12 Score=91.52 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=63.0
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH---HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL---TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~---tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
..+.|+|.+..... . +.++++++||.+||++|+.. +|+|+++|||+|. |+. | +|+.+|++|++.+|
T Consensus 4 ~~m~i~vk~~~g~~-~---~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i~~g 72 (85)
T 2wyq_A 4 MAVTITLKTLQQQT-F---KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA---GKI---L-SDDVPIRDYRIDEK 72 (85)
T ss_dssp CCEEEEEEETTSCE-E---EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET---TEE---C-CTTSBGGGGCCCTT
T ss_pred ceEEEEEEECCCCE-E---EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC---CEE---C-cCCCCHHHcCCCCC
Confidence 45788898753331 3 78999999999999999998 9999999999986 765 4 67899999999999
Q ss_pred cEEEEEeC
Q psy13905 92 MTLFVEGN 99 (248)
Q Consensus 92 ~~IhVvD~ 99 (248)
++|||+..
T Consensus 73 ~~i~l~~~ 80 (85)
T 2wyq_A 73 NFVVVMVT 80 (85)
T ss_dssp SEEEEEEC
T ss_pred CEEEEEEc
Confidence 99999875
No 42
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.28 E-value=1e-11 Score=93.11 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=62.4
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...++|+|.+..... . ..++++++||.+||++|+..+|+|++.|||++. |+. | +|+.+|++|++++|++
T Consensus 15 ~~~m~i~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~~ 83 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTH-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST 83 (91)
T ss_dssp CCSEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTCBTGGGTCCTTCE
T ss_pred CCeEEEEEEeCCCCE-E---EEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC---CeE---C-CCcCcHHHCCCCCCCE
Confidence 346788888643331 3 689999999999999999999999999999986 766 4 6789999999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|||+-
T Consensus 84 i~l~~ 88 (91)
T 3v6c_B 84 LHLVL 88 (91)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99973
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=4.1e-12 Score=97.74 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=62.9
Q ss_pred ceEEEEEEeCCC---CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 15 GTVELYITNSKD---KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 15 ~~V~v~ItS~~~---s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
+.+.|+|+.... .... ..++++++||.+||++|+..+|+||++|+|++. |+. |.++.++|++|+|++|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~---~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---gk~---L~D~~~tL~~ygI~~g 76 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTF---SLQVNPDFELSNFRVLCELESGVPAEEAQIVYM---EQL---LTDDHCSLGSYGLKDG 76 (102)
T ss_dssp CCEEEEEEECCCCCCCCEE---EEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET---TEE---ECCSSSBHHHHTCCTT
T ss_pred CeEEEEEEECCCCcCceEE---EEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC---CEE---CCCCcccHHHCCCCCC
Confidence 457788876321 1223 688999999999999999999999999999986 665 5556689999999999
Q ss_pred cEEEEEeCC
Q psy13905 92 MTLFVEGNY 100 (248)
Q Consensus 92 ~~IhVvD~~ 100 (248)
++|||+...
T Consensus 77 ~~l~l~~~~ 85 (102)
T 1v5o_A 77 DMVVLLQKD 85 (102)
T ss_dssp EEEEECBCC
T ss_pred CEEEEEECC
Confidence 999999864
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.28 E-value=9.7e-12 Score=95.66 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=64.5
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+...+.|+|++.... . +.++++++||.+||++|+..+|+||+.|+|+|. |+. | +|+.+|++|++.+|+
T Consensus 22 ~~~~m~I~Vk~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~gI~~g~ 89 (101)
T 2klc_A 22 HPKIMKVTVKTPKEK--E---EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA---GKI---L-KDQDTLSQHGIHDGL 89 (101)
T ss_dssp -CCCEEEEEECSSCE--E---EEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET---TEE---E-CTTCCTGGGTCCTTC
T ss_pred CCCeEEEEEEeCCcE--E---EEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCcCcHHHcCCCCCC
Confidence 456789999986332 3 789999999999999999999999999999985 765 4 578999999999999
Q ss_pred EEEEEeC
Q psy13905 93 TLFVEGN 99 (248)
Q Consensus 93 ~IhVvD~ 99 (248)
+|||+..
T Consensus 90 ~I~l~~~ 96 (101)
T 2klc_A 90 TVHLVIK 96 (101)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999874
No 45
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.28 E-value=8.1e-12 Score=92.25 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
..+.+.|+|.+..... . ..++++++||.+||++|+..+|+||+.|+|+|. |+. | +|+.+|.+|++++|+
T Consensus 9 ~~~~m~i~vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---G~~---L-~d~~tL~~~~i~~~~ 77 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDEKTAADYKILGGS 77 (88)
T ss_dssp CCCCEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEE---C-CTTSBGGGGTCCTTC
T ss_pred CCCcEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC---CeE---C-CCCCcHHHcCCCCCC
Confidence 4457889998754331 3 789999999999999999999999999999985 765 4 678999999999999
Q ss_pred EEEEE
Q psy13905 93 TLFVE 97 (248)
Q Consensus 93 ~IhVv 97 (248)
+|||+
T Consensus 78 ~i~l~ 82 (88)
T 3dbh_I 78 VLHLV 82 (88)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99986
No 46
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=7.4e-12 Score=92.54 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=63.1
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
.+.++|+|.+..... . +.+++++.||.+||++|+..+|+||+.|+|+|. |+. | +|+.+|++|++.+|++
T Consensus 5 ~~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~---Gk~---L-~d~~tL~~~~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGS-Y---AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ---GQV---L-QDWLGLGIYGIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETTTEE-E---EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET---TEE---C-CSSSBHHHHTCCTTEE
T ss_pred CCCEEEEEEcCCCCE-E---EEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC---CEE---c-cCCCCHHHCCCCCCCE
Confidence 357889998754331 3 789999999999999999999999999999985 665 4 6789999999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|||+-
T Consensus 74 i~l~~ 78 (87)
T 1wh3_A 74 LILSK 78 (87)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99974
No 47
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.2e-11 Score=90.38 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=61.8
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+.++|+|.+..... . ..+++++.||.+||++|+..+|+||+.|+|++. |+. | .|+.+|++|++++|++|
T Consensus 2 s~m~i~vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~---g~~---L-~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 2 SHMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp -CEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBTGGGTCCTTCEE
T ss_pred CeEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCCCCHHHcCCCCCCEE
Confidence 45788998754331 3 789999999999999999999999999999985 665 4 57899999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
||+-
T Consensus 71 ~l~~ 74 (85)
T 3mtn_B 71 FLLL 74 (85)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9974
No 48
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.26 E-value=6.6e-12 Score=93.84 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=62.6
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
.+.|+|.+..... . ..+++++.||.+||++|+..+|+||+.|||+|. |+. | +|+.+|++|++++|++||
T Consensus 4 ~m~I~Vk~~~g~~-~---~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~~I~~g~~i~ 72 (88)
T 2hj8_A 4 PLSILVRNNKGRS-S---TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKP---L-EDQLPLGEYGLKPLSTVF 72 (88)
T ss_dssp EEEEEEEETTSCE-E---EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS---SSC---C-CTTSBHHHHHCSTTCEEE
T ss_pred cEEEEEECCCCCE-E---EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEE
Confidence 5788888753331 3 689999999999999999999999999999985 665 4 678999999999999999
Q ss_pred EEeC
Q psy13905 96 VEGN 99 (248)
Q Consensus 96 VvD~ 99 (248)
|+..
T Consensus 73 l~~~ 76 (88)
T 2hj8_A 73 MNLR 76 (88)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9874
No 49
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=9.9e-12 Score=91.06 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=60.4
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+.+.|+|.+..... . ..++++++||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|++++|++|
T Consensus 2 s~m~i~vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~---g~~---L-~d~~tL~~~~i~~~~~i 70 (85)
T 3n3k_B 2 SHMRIVVKTLMGRT-I---ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIHNHSAL 70 (85)
T ss_dssp --CEEEEECGGGCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---BEE---C-CTTCBTTTTTCCTTCEE
T ss_pred CeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CeE---C-CCCCCHHHCCCCCCCEE
Confidence 45678888643221 3 789999999999999999999999999999985 665 4 67889999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
||+-
T Consensus 71 ~l~~ 74 (85)
T 3n3k_B 71 YLLL 74 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 50
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.25 E-value=1.5e-11 Score=95.82 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=63.6
Q ss_pred CCceEEEEEEeCC--CCcccccceEEecC-CCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 13 GGGTVELYITNSK--DKHESCLNLKKLKL-NNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 13 ~~~~V~v~ItS~~--~s~~s~~~E~r~~~-~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
..+.+.|+|.+.. ..... +.++++ ++||.+||++|+..+|+||+.|+|++. |+. .+|+.+|++|+|.
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~---~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~---Gk~----L~D~~tL~~y~I~ 93 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFM---EITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK---AGF----LKDNMSLAHYNVG 93 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCE---EEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS---SSB----CCTTSBTTTTTCS
T ss_pred CCCcEEEEEEecccCCCcEE---EEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC---CEE----CCCCCcHHHCCCC
Confidence 3467899999752 22223 789998 999999999999999999999999985 665 4678999999999
Q ss_pred CCcEEEEEe
Q psy13905 90 NEMTLFVEG 98 (248)
Q Consensus 90 dG~~IhVvD 98 (248)
+|++|||+=
T Consensus 94 ~g~~l~l~~ 102 (111)
T 1we6_A 94 AGEILTLSL 102 (111)
T ss_dssp SSCEEEEEC
T ss_pred CCCEEEEEE
Confidence 999999973
No 51
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.25 E-value=1.6e-11 Score=91.79 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=59.5
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|.+..... . ..++++++||.+||++|+..+|+||+.|||++. |+. | +|+.+|++|++++|++||++
T Consensus 2 ~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC---CeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 56777543331 3 689999999999999999999999999999986 766 4 67899999999999999998
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
-
T Consensus 71 ~ 71 (88)
T 4fbj_B 71 L 71 (88)
T ss_dssp C
T ss_pred E
Confidence 4
No 52
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.25 E-value=1.6e-11 Score=87.65 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=59.2
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
+|+|.+..... . +.+++++.||.+||++|+..+|+||+.|+|.+. |+. | +|+.+|++|++++|++||++
T Consensus 2 ~i~vk~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~---g~~---L-~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCE-E---EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 57777643321 3 689999999999999999999999999999986 765 4 67899999999999999997
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
-
T Consensus 71 ~ 71 (76)
T 1ndd_A 71 L 71 (76)
T ss_dssp E
T ss_pred E
Confidence 4
No 53
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=5.4e-12 Score=95.42 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=64.5
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
....++|+|++.... . +.++++++||.+||++|+..+|+|++.|||+|. |+. | +|+.+|.+|++++|+
T Consensus 14 ~~~~m~i~Vk~~g~~--~---~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~ 81 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDC--H---EFFLAENSNVRRFKKQISKYLHCNADRLVLIFT---GKI---L-RDQDILSQRGILDGS 81 (96)
T ss_dssp CSCEEEEEEECSSSE--E---EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET---TEE---C-CTTSCHHHHTCCTTE
T ss_pred CCCcEEEEEEECCeE--E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEE---C-CCcCCHHHCCCCCCC
Confidence 345789999987332 3 789999999999999999999999999999986 765 4 678999999999999
Q ss_pred EEEEEeC
Q psy13905 93 TLFVEGN 99 (248)
Q Consensus 93 ~IhVvD~ 99 (248)
+|||+..
T Consensus 82 ~i~l~~~ 88 (96)
T 1wx8_A 82 TVHVVVR 88 (96)
T ss_dssp EEECCBC
T ss_pred EEEEEEe
Confidence 9999864
No 54
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.24 E-value=2.6e-11 Score=90.35 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=62.9
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...+.|+|.+..... . ..++++++||.+||++|+..+|+|++.|||+|. |+. | +|+.+|++|++ +|++
T Consensus 3 ~~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~---Gk~---L-~d~~tL~~~~i-~g~~ 70 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQT-R---TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ---GRV---L-QDDKKLQEYNV-GGKV 70 (90)
T ss_dssp CCEEEEEEEETTCCE-E---EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTC-TTEE
T ss_pred CcEEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CeE---C-CCCCCHHHcCC-CCcE
Confidence 356789998754331 3 688999999999999999999999999999985 776 4 67899999999 8999
Q ss_pred EEEEeC
Q psy13905 94 LFVEGN 99 (248)
Q Consensus 94 IhVvD~ 99 (248)
||++..
T Consensus 71 i~l~~~ 76 (90)
T 4dwf_A 71 IHLVER 76 (90)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999974
No 55
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=1.9e-11 Score=90.75 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=62.4
Q ss_pred CceEEEEEEeCCC-CcccccceE-EecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 14 GGTVELYITNSKD-KHESCLNLK-KLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 14 ~~~V~v~ItS~~~-s~~s~~~E~-r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
...+.|+|.+... .. . .. .++++.||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|++.+|
T Consensus 5 ~~~m~i~Vk~~~g~~~-~---~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g 73 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKT-C---TIEDVSRKATIEELRERVWALFDVRPECQRLFYR---GKQ---L-ENGYTLFDYDVGLN 73 (89)
T ss_dssp SSCEEEEEEETTCSCE-E---EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET---TEE---C-CSSSBHHHHTCCTT
T ss_pred CCcEEEEEEECCCCce-E---EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC---CeE---C-CCCCCHHHCCCCCC
Confidence 4568899987533 21 3 67 5999999999999999999999999999985 665 4 67899999999999
Q ss_pred cEEEEEe
Q psy13905 92 MTLFVEG 98 (248)
Q Consensus 92 ~~IhVvD 98 (248)
++||++-
T Consensus 74 ~~i~l~~ 80 (89)
T 1wy8_A 74 DIIQLLV 80 (89)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9999974
No 56
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.9e-11 Score=93.21 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=61.9
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
+..++|+|.+..... . ..++++++||.+||++|+..+|+||+.|||+|. |+. | +|+.+|++|+|++|++
T Consensus 20 ~~~m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKT-I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST 88 (98)
T ss_dssp --CCEEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTCBSGGGTCCTTEE
T ss_pred CCeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC---CEE---C-CCCCcHHHCCCCCCCE
Confidence 346788998654331 3 689999999999999999999999999999986 766 4 6889999999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|||+-
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99973
No 57
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.23 E-value=2.4e-11 Score=86.76 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=59.2
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|.+..... . +.+++++.||++||++|+..+|+||+.|+|.+. |+. | +|+.+|++|++.+|++||++
T Consensus 2 ~i~vk~~~g~~-~---~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~---g~~---L-~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 57777643331 3 689999999999999999999999999999985 665 4 57899999999999999987
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
-
T Consensus 71 ~ 71 (76)
T 3a9j_A 71 L 71 (76)
T ss_dssp E
T ss_pred E
Confidence 4
No 58
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=3.1e-11 Score=96.55 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=64.6
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
.+.++|+|++.... . ++++++++||.+||++|+..+|+|++.|||+|. |+. | +|+.+|++|+|++|++
T Consensus 30 ~~~m~I~Vk~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dygI~~gst 97 (125)
T 1j8c_A 30 PKIIKVTVKTPKEK--E---EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA---GKI---L-KDQDTLIQHGIHDGLT 97 (125)
T ss_dssp CCCEEEEEECSSCE--E---EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET---TEE---E-STTSCGGGTTCSSSEE
T ss_pred CCcEEEEEEeCCeE--E---EEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC---CEE---c-CCCCCHHHcCCCCCCE
Confidence 35789999986322 3 789999999999999999999999999999986 766 4 5789999999999999
Q ss_pred EEEEeCC
Q psy13905 94 LFVEGNY 100 (248)
Q Consensus 94 IhVvD~~ 100 (248)
|||+...
T Consensus 98 I~lv~~~ 104 (125)
T 1j8c_A 98 VHLVIKR 104 (125)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999854
No 59
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=1.9e-11 Score=94.38 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=64.7
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
....++|+|++.... . +.++++++||.+||++|+..+|+|++.|||+|. |+. | +|+.+|.+|+|++|+
T Consensus 14 ~~~~m~I~Vk~~~g~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~gi~~g~ 81 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK--E---DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA---GKI---L-KDPDSLAQCGVRDGL 81 (106)
T ss_dssp CSSEEEEEEECSSCE--E---EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET---TEE---C-CTTSCHHHHTCCTTE
T ss_pred CCceEEEEEEeCCCc--E---EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCcCcHHHcCCCCCC
Confidence 345789999875443 3 689999999999999999999999999999985 665 4 678999999999999
Q ss_pred EEEEEeC
Q psy13905 93 TLFVEGN 99 (248)
Q Consensus 93 ~IhVvD~ 99 (248)
+|||+..
T Consensus 82 ~i~l~~~ 88 (106)
T 1wx7_A 82 TVHLVIK 88 (106)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999974
No 60
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=1.4e-11 Score=94.71 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=65.0
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
.+..++|+|++.... . +.++++++||.+||++|+..+|+||+.|||+|. |+. | +|+.+|++|++++|+
T Consensus 19 ~~~~m~I~Vk~~~g~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~ygI~~gs 86 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK--E---DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA---GKI---L-KDPDSLAQCGVRDGL 86 (100)
T ss_dssp CTTEEEEEEECSSCE--E---EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBHHHHTCCTTC
T ss_pred CCCeEEEEEEcCCCc--E---EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCcCcHHHCCCCCCC
Confidence 456789999976544 3 689999999999999999999999999999986 765 4 678999999999999
Q ss_pred EEEEEeC
Q psy13905 93 TLFVEGN 99 (248)
Q Consensus 93 ~IhVvD~ 99 (248)
+|||+..
T Consensus 87 tI~l~~r 93 (100)
T 1yqb_A 87 TVHLVIK 93 (100)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999864
No 61
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.22 E-value=7.3e-12 Score=97.39 Aligned_cols=81 Identities=10% Similarity=0.079 Sum_probs=63.3
Q ss_pred ceEEEEEEeCCCCcccccceEEec-CCCCHHHHHHHHHHHHCCCCCCeEEEEEeCC--Cc------eeeccCCCCcccCC
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLK-LNNTIGELKQKLELLTGQMSSNMTISLYNRN--HD------LVSHLSDNSMLLGQ 85 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~-~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~--g~------~i~~L~~d~~~L~~ 85 (248)
+.+.|+|.+..-. . ...++ +++||.+||+||+.++||||++|+|++.... ++ .+..+.+|+++|++
T Consensus 6 ~~M~irvrs~~G~--~---~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~ 80 (107)
T 1wf9_A 6 SGTMLRVRSRDGL--E---RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISS 80 (107)
T ss_dssp CCEEEEEECSSCE--E---EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGG
T ss_pred CeEEEEEECCCCC--E---EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHH
Confidence 3467888875443 2 46788 9999999999999999999999999987320 00 22223688999999
Q ss_pred CCCCCCcEEEEEeCC
Q psy13905 86 YPVENEMTLFVEGNY 100 (248)
Q Consensus 86 y~i~dG~~IhVvD~~ 100 (248)
|+|++|++|||++..
T Consensus 81 ~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 81 LNLAHGSMVYLAYEG 95 (107)
T ss_dssp TCCCTTCEEECCCSS
T ss_pred CCCCCCCEEEEEeCC
Confidence 999999999999853
No 62
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.22 E-value=1.3e-11 Score=96.93 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=63.5
Q ss_pred CceEEEEEEeCCC---------CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccC
Q psy13905 14 GGTVELYITNSKD---------KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLG 84 (248)
Q Consensus 14 ~~~V~v~ItS~~~---------s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~ 84 (248)
.+.|+|.|+++.. ... ++.++++++||.+||++|+..+|+||+.|+|+|. |+. | .|+.+|+
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~---~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~---Gk~---L-~D~~tL~ 92 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQG---LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE---GIF---I-KDSNSLA 92 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEE---EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET---TEE---E-CTTSBHH
T ss_pred CCCEEEEEEcCCCccccccccCCeE---EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC---CEE---C-CCCCCHH
Confidence 4678999997542 111 3789999999999999999999999999999985 765 4 5789999
Q ss_pred CCCCCCCcEEEEEe
Q psy13905 85 QYPVENEMTLFVEG 98 (248)
Q Consensus 85 ~y~i~dG~~IhVvD 98 (248)
+|++.+|++|||+-
T Consensus 93 ~y~i~~g~~i~lv~ 106 (115)
T 1we7_A 93 YYNMASGAVIHLAL 106 (115)
T ss_dssp HHTCCSSCEEEEEE
T ss_pred HCCCCCCCEEEEEE
Confidence 99999999999974
No 63
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.22 E-value=2e-11 Score=94.60 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=62.9
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
..++.|+|.+..... . ...++++.||.+||++|+..+|+||++|||++. |+. | +|+.+|++|+|++|++
T Consensus 26 ~~mm~I~VKtl~Gk~-i---~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~---Gk~---L-~D~~TL~dygI~~gst 94 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKK-V---RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW---YTI---F-KDHVSLGDYEIHDGMN 94 (100)
T ss_dssp CCEEEEEEECSSSSC-E---EEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CSSCBHHHHTCCTTEE
T ss_pred CCeEEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC---CEE---C-CCCCCHHHcCCCCCCE
Confidence 346899999654331 3 689999999999999999999999999999986 776 4 7899999999999999
Q ss_pred EEEE
Q psy13905 94 LFVE 97 (248)
Q Consensus 94 IhVv 97 (248)
||++
T Consensus 95 lhL~ 98 (100)
T 1uh6_A 95 LELY 98 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 64
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.21 E-value=3.4e-11 Score=94.11 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=61.8
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
..++|+|.+..... . ..++++++||.+||++|+..+|+||+.|||+|. |+. | .|+.+|++|++++|++|
T Consensus 34 ~~m~I~Vk~~~G~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 34 LAMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTL 102 (111)
T ss_dssp GCEEEEEECSSSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTTTTTCCTTCEE
T ss_pred ccEEEEEEeCCCCE-E---EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEE
Confidence 36788888643321 3 689999999999999999999999999999986 765 4 67889999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
|++-
T Consensus 103 ~l~~ 106 (111)
T 3vdz_A 103 HLVL 106 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 65
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=1.9e-11 Score=94.65 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCceEEEEEEeCC-C--CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 13 GGGTVELYITNSK-D--KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 13 ~~~~V~v~ItS~~-~--s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
..++.+|.|..+. . .... +..+++++||.+||++|+..+|+||++|||+|. |+. | +|+.+|.+|+|+
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~---~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~---GKi---L-~D~~TL~~y~I~ 81 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKN---LLETRLHITGRELRSKIAETFGLQENYIKIVIN---KKQ---L-QLGKTLEEQGVA 81 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSE---EEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET---TEE---C-CTTSBHHHHTCC
T ss_pred hcceEEEEEEecCCCCCCcEE---EEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC---CeE---C-CCCCcHHHcCCC
Confidence 3456666776433 1 2223 899999999999999999999999999999986 887 4 788999999999
Q ss_pred CCcEEEEEeCC
Q psy13905 90 NEMTLFVEGNY 100 (248)
Q Consensus 90 dG~~IhVvD~~ 100 (248)
+|++|||+-..
T Consensus 82 ~gsti~vl~lr 92 (100)
T 1wju_A 82 HNVKAMVLELK 92 (100)
T ss_dssp SSEEEEEECCC
T ss_pred CCCEEEEEEEC
Confidence 99999998654
No 66
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.20 E-value=2.2e-11 Score=93.75 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCCceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHH-HHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC-
Q psy13905 12 DGGGTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKL-ELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV- 88 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KL-e~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i- 88 (248)
+..+.+.|+|.+.... +.. +..++++.||.+||++| +..+|+||++|||+|. |+. | .|+.+|++|+|
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i---~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dy~I~ 84 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSI---EHDFSPSDTILQIKQHLISEEKASHISEIKLLLK---GKV---L-HDNLFLSDLKVT 84 (98)
T ss_dssp ---CCEEEEEEECSSSCEEE---EEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET---TEE---E-CTTCBGGGSCCB
T ss_pred CCCCCEEEEEEcCCCCEEEE---EEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC---CEE---C-cCcCCHHHcCcC
Confidence 4567889999975443 222 55778999999999999 9999999999999996 776 4 68899999999
Q ss_pred CCCcEEEEEe
Q psy13905 89 ENEMTLFVEG 98 (248)
Q Consensus 89 ~dG~~IhVvD 98 (248)
++|.+||++-
T Consensus 85 ~~g~ti~lmv 94 (98)
T 4a20_A 85 PANSTITVMI 94 (98)
T ss_dssp TTBCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999999874
No 67
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=4.7e-11 Score=90.44 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=60.9
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH---HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL---TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~---tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+|+|.+..... . +.++++++||.+||++|+.. +|+||+.|||+|. |+. | +|+.+|++|++.+|++|
T Consensus 2 ~I~Vk~~~g~~-~---~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQT-F---KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA---GKI---L-NDDTALKEYKIDEKNFV 70 (95)
T ss_dssp EEEEEETTCCE-E---EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET---TEE---C-CTTSBGGGGTCCSSSEE
T ss_pred EEEEEeCCCCE-E---EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC---CEE---C-CCcCcHHHCCCCCCCEE
Confidence 57777643321 3 78999999999999999999 8999999999986 766 4 67899999999999999
Q ss_pred EEEeCC
Q psy13905 95 FVEGNY 100 (248)
Q Consensus 95 hVvD~~ 100 (248)
||+...
T Consensus 71 ~l~~~~ 76 (95)
T 1uel_A 71 VVMVTK 76 (95)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 999864
No 68
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.20 E-value=6.6e-11 Score=92.26 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=63.1
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
.+.++|+|++..... . +.+++++.||.+||++|+..+|+||+.|+|++. |+. | .|+.+|++|++.+|++
T Consensus 33 ~~~m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~gI~~gs~ 101 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST 101 (111)
T ss_dssp SSCEEEEEECSSSCE-E---EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET---TEE---C-CSSCBTTTTTCCTTCE
T ss_pred CCeEEEEEEcCCCCE-E---EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC---CEE---C-CCCCcHHHcCCCCCCE
Confidence 457899999753331 3 688999999999999999999999999999985 665 4 6789999999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|||+-
T Consensus 102 I~l~~ 106 (111)
T 2ojr_A 102 LHLVL 106 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99974
No 69
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=93.09 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=60.3
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
.+.|+|.+ ... . ..+++++.||.+||++|+..+|+||+.|+|+|. |+. | +|+.+|++|++++|++||
T Consensus 19 ~m~I~Vk~-g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~y~I~~gstI~ 85 (93)
T 2l7r_A 19 SMQLFVRA-QEL--H---TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA---GAP---L-EDEATLGQCGVEALTTLE 85 (93)
T ss_dssp -CEEEEES-SSE--E---EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET---TEE---C-CTTSBHHHHTCCSSCEEE
T ss_pred cEEEEEEC-CCE--E---EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEEE
Confidence 46788888 332 3 789999999999999999999999999999986 765 4 688999999999999999
Q ss_pred EEe
Q psy13905 96 VEG 98 (248)
Q Consensus 96 VvD 98 (248)
|+-
T Consensus 86 lv~ 88 (93)
T 2l7r_A 86 VAG 88 (93)
T ss_dssp EEC
T ss_pred EEE
Confidence 973
No 70
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=3.3e-11 Score=90.76 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHH--CCCCCCeEEEEEeCCCceeeccCCCCcccCCC--CCCC
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLT--GQMSSNMTISLYNRNHDLVSHLSDNSMLLGQY--PVEN 90 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~t--Gipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y--~i~d 90 (248)
+.+.|+|.+....... ++..+++++||.+||++|+..+ |+||++|||+|. |+. | .|+.+|++| ++++
T Consensus 6 ~~m~i~Vk~~~~~~~~--~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~---Gk~---L-~D~~tL~~~~~~i~~ 76 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRD--LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS---GKL---L-LDHQCLRDLLPKQEK 76 (93)
T ss_dssp CCCEEEEECSSSSCCC--EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET---TEE---C-CSSSCHHHHSCSSSC
T ss_pred cEEEEEEEeCCCCeEE--EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC---CEE---C-cCcCCHHHHhcCCCC
Confidence 4688999975443111 2566779999999999999999 999999999986 776 4 577899999 9999
Q ss_pred CcEEEEEeC
Q psy13905 91 EMTLFVEGN 99 (248)
Q Consensus 91 G~~IhVvD~ 99 (248)
|++||++-.
T Consensus 77 ~~~i~lv~~ 85 (93)
T 1wgd_A 77 RHVLHLVCN 85 (93)
T ss_dssp SEEEEEECC
T ss_pred CCEEEEEeC
Confidence 999999853
No 71
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.18 E-value=4.8e-11 Score=89.78 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=60.6
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+.|+|.+..... . +.++++++||.+||++|+..+|+|++.|+|+|. |+. | +|+.+|++|++.+|++|||
T Consensus 2 m~i~vk~~~g~~-~---~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~---G~~---L-~d~~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 2 MQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL 70 (96)
T ss_dssp CEEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEeCCCCE-E---EEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEE
Confidence 367787643321 3 689999999999999999999999999999985 765 4 5788999999999999999
Q ss_pred EeC
Q psy13905 97 EGN 99 (248)
Q Consensus 97 vD~ 99 (248)
+-.
T Consensus 71 ~~r 73 (96)
T 3k9o_B 71 VLR 73 (96)
T ss_dssp EEC
T ss_pred EEE
Confidence 853
No 72
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=2.7e-11 Score=93.79 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=64.3
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...+.|+|.+..... . ..++++++||.+||++|+..+|+|++.|||+|. |+. | +|+.+|++|++++|++
T Consensus 21 ~~~m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~ygI~~g~t 89 (106)
T 1ttn_A 21 GYECQLRLRLSTGKD-L---KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS---GRP---L-TDKMKFEELKIPKDYV 89 (106)
T ss_dssp CCSEEEEEEETTTEE-E---EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET---TEE---C-CTTSHHHHCCCSSSCE
T ss_pred CCeEEEEEEcCCCCE-E---EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC---CEE---C-CCCCcHHHcCCCCCCE
Confidence 346889998643331 3 689999999999999999999999999999986 765 4 6789999999999999
Q ss_pred EEEEeCC
Q psy13905 94 LFVEGNY 100 (248)
Q Consensus 94 IhVvD~~ 100 (248)
|||+...
T Consensus 90 i~lv~~~ 96 (106)
T 1ttn_A 90 VQVIVSQ 96 (106)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 9999753
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.18 E-value=4.6e-11 Score=93.29 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=59.4
Q ss_pred CceEEEEEE-eCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC-CCC
Q psy13905 14 GGTVELYIT-NSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV-ENE 91 (248)
Q Consensus 14 ~~~V~v~It-S~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i-~dG 91 (248)
++.|++.|+ ....+. ...+..++.|+.||++||++|+...|+||+.|||++. |+ +.+|+++|++||| ++|
T Consensus 20 ~~~i~l~v~v~d~~s~-~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g---gk----ll~D~~TL~~ygI~~~G 91 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMH-TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG---QR----LARDQETLHSHGVRQNG 91 (105)
T ss_dssp CCCEEEEEEEEESSSC-CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TE----EECTTCBTGGGTCCSTT
T ss_pred CCcEEEEEEEEccCCC-CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc---Ce----EccCcCcHHHcCCCCCC
Confidence 346666666 222220 0113789999999999999999999999999997653 43 4578999999999 599
Q ss_pred cEEEEEe
Q psy13905 92 MTLFVEG 98 (248)
Q Consensus 92 ~~IhVvD 98 (248)
++||++=
T Consensus 92 ~t~hL~l 98 (105)
T 4dbg_A 92 DSAYLYL 98 (105)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9999874
No 74
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3.2e-11 Score=93.46 Aligned_cols=73 Identities=21% Similarity=0.157 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
++|+|.+..... . ..++++++||.+||++|+..+|+|++.|||+|. |+. | .|+.+|++|+|++|++|||
T Consensus 2 m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~~i~~g~~i~l 70 (106)
T 3m62_B 2 VSLTFKNFKKEK-V---PLDLEPSNTILETKTKLAQSISCEESQIKLIYS---GKV---L-QDSKTVSECGLKDGDQVVF 70 (106)
T ss_dssp -CEEEECTTCCE-E---EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET---TEE---C-CTTSBTTTTTCCTTCEEEE
T ss_pred EEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC---CEE---C-CCcCCHHHcCCCCCCEEEE
Confidence 467888633321 3 688999999999999999999999999999986 776 4 6789999999999999999
Q ss_pred EeCC
Q psy13905 97 EGNY 100 (248)
Q Consensus 97 vD~~ 100 (248)
+-..
T Consensus 71 v~~~ 74 (106)
T 3m62_B 71 MVSQ 74 (106)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9753
No 75
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=6.8e-11 Score=88.37 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=58.4
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|.+..... . +.++++++||++||++|+..+|+||+.|||++. |+. | .|+.+|++|++.+|++||++
T Consensus 11 ~i~v~~~~G~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 11 QLFIKTLTGKT-F---TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp EEEEEETTSCE-E---EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBSGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCE-E---EEEECCCChHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 45666433331 3 789999999999999999999999999999985 765 4 57899999999999999987
Q ss_pred e
Q psy13905 98 G 98 (248)
Q Consensus 98 D 98 (248)
-
T Consensus 80 ~ 80 (88)
T 1sif_A 80 L 80 (88)
T ss_dssp C
T ss_pred E
Confidence 3
No 76
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.15 E-value=4.8e-11 Score=91.08 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=62.2
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...++|+|++.... +. +..++++.||.+||++|+..+|+||++|||++. |+. | .|+ +|.+|+|++|++
T Consensus 5 ~~~m~i~Vk~~g~~-~~---~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~---Gk~---L-~D~-tL~~~~I~~g~~ 72 (96)
T 1wgg_A 5 SSGYSVTVKWGKEK-FE---GVELNTDEPPMVFKAQLFALTGVQPARQKVMVK---GGT---L-KDD-DWGNIKMKNGMT 72 (96)
T ss_dssp CCEEEEEEEETTEE-EE---EEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET---TEE---C-CSS-CCCSCCCCSSCE
T ss_pred CcEEEEEEEECCEE-EE---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CcC---C-CCC-CHHHCCCCCCCE
Confidence 45788999875433 11 488999999999999999999999999999975 766 5 455 999999999999
Q ss_pred EEEEeCC
Q psy13905 94 LFVEGNY 100 (248)
Q Consensus 94 IhVvD~~ 100 (248)
||++-+.
T Consensus 73 i~l~~~~ 79 (96)
T 1wgg_A 73 VLMMGSA 79 (96)
T ss_dssp EECCCCC
T ss_pred EEEEecc
Confidence 9998653
No 77
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.15 E-value=2.3e-11 Score=91.49 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=62.3
Q ss_pred CceEEEEEEeCCCCcccccceE-EecCCCCHHHHHHHHHHHHCCCCCCeEEE---EEeCCCceeeccCCCCcccCCCCCC
Q psy13905 14 GGTVELYITNSKDKHESCLNLK-KLKLNNTIGELKQKLELLTGQMSSNMTIS---LYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~-r~~~~~TI~eLK~KLe~~tGipp~~mrL~---l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
...++|+|+..... . .. .++++.||.+||++|+..+|+||++|||+ +. |+. | .|+.+|++|+|.
T Consensus 5 ~~~m~i~Vk~~g~~--~---~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~---Gk~---L-~D~~~L~~~~i~ 72 (90)
T 1v5t_A 5 SSGLPIIVKWGGQE--Y---SVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVK---GKP---A-ENDVKLGALKLK 72 (90)
T ss_dssp CCSCCEEEEETTEE--E---EECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEET---TEE---C-CTTSBHHHHTCC
T ss_pred CceEEEEEEECCEE--E---EEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccC---CcC---c-CCCCCHHHcCCC
Confidence 34577888874433 3 67 88999999999999999999999999999 75 665 4 678999999999
Q ss_pred CCcEEEEEeC
Q psy13905 90 NEMTLFVEGN 99 (248)
Q Consensus 90 dG~~IhVvD~ 99 (248)
+|.+||++-+
T Consensus 73 ~g~~l~l~~~ 82 (90)
T 1v5t_A 73 PNTKIMMMGT 82 (90)
T ss_dssp TTEEEEEECC
T ss_pred CCCEEEEEec
Confidence 9999999864
No 78
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.4e-11 Score=90.81 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=61.0
Q ss_pred EEEEEEeCCCC-cccccceEEecCCCCHHHHHHHH-HHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC-CCCcE
Q psy13905 17 VELYITNSKDK-HESCLNLKKLKLNNTIGELKQKL-ELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV-ENEMT 93 (248)
Q Consensus 17 V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KL-e~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i-~dG~~ 93 (248)
+.|+|.+.... +.. +..++++.||.+||++| +..+|+||++|||+|. |+. | .|+.+|++|++ ++|++
T Consensus 2 mqI~VKtl~g~~~~i---~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~y~I~~~~st 71 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSI---EHDFSPSDTILQIKQHLISEEKASHISEIKLLLK---GKV---L-HDNLFLSDLKVTPANST 71 (87)
T ss_dssp CEEEEEECSSSCEEC---CEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET---TEE---C-CTTCBHHHHCCCGGGCE
T ss_pred EEEEEEcCCCCEEEE---EEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC---CEE---C-cCcCCHHHcCCCCCCCE
Confidence 57888875443 222 55677999999999999 9999999999999986 877 4 78899999999 79999
Q ss_pred EEEEeC
Q psy13905 94 LFVEGN 99 (248)
Q Consensus 94 IhVvD~ 99 (248)
|||.-+
T Consensus 72 l~v~~~ 77 (87)
T 2lxa_A 72 ITVMIK 77 (87)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999865
No 79
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.11 E-value=1.7e-10 Score=87.57 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=60.7
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
+|+|.+..... . +.+++++.||.+||++|+..+|+||+.|+|+|. |+. | +|+.+|++|++.+|++|||+
T Consensus 2 ~I~Vk~~~g~~-~---~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCCCCHHHcCCCCCCEEEEE
Confidence 57777643321 3 689999999999999999999999999999985 765 4 57899999999999999998
Q ss_pred eCC
Q psy13905 98 GNY 100 (248)
Q Consensus 98 D~~ 100 (248)
...
T Consensus 71 ~~~ 73 (98)
T 1yx5_B 71 LRL 73 (98)
T ss_dssp ECC
T ss_pred EeC
Confidence 753
No 80
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.11 E-value=7.8e-11 Score=90.79 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH-HCCCC-CCeEEEEEeCCCceeeccCCCCcccCCC--C
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL-TGQMS-SNMTISLYNRNHDLVSHLSDNSMLLGQY--P 87 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~-tGipp-~~mrL~l~~~~g~~i~~L~~d~~~L~~y--~ 87 (248)
.+.+.+.|+|.+....... +...+++++||.+||++|+.. +|+|| ++|||+|. |+. | .|+.+|++| +
T Consensus 19 ~~~~~m~I~VK~~~g~~~~--i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~---Gk~---L-~D~~tL~~y~~~ 89 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSD--QTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS---GRL---L-PDHLQLKDILRK 89 (99)
T ss_dssp ----CEEEEEECTTSSSCC--EEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET---TEE---E-CTTSBTHHHHTT
T ss_pred CCCCeEEEEEEcCCCCEEE--EEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC---CEE---C-CCCCCHHHHhcC
Confidence 3456789999975433111 257779999999999999986 67775 99999987 877 4 588999999 9
Q ss_pred CCCCcEEEEE
Q psy13905 88 VENEMTLFVE 97 (248)
Q Consensus 88 i~dG~~IhVv 97 (248)
|++|++||++
T Consensus 90 I~~~~tihLv 99 (99)
T 2kdb_A 90 QDEYHMVHLV 99 (99)
T ss_dssp TCSEEEEEEC
T ss_pred CCCCCEEEeC
Confidence 9999999985
No 81
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.11 E-value=1.2e-10 Score=84.55 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=61.2
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
.++|+|.+..... . ..+++++.||.+||++++..+|+||++|+|+|. |+. | .|+.+|++|++++|++||
T Consensus 3 ~m~i~vk~~~g~~-~---~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~---G~~---L-~d~~tl~~~~i~~~~~i~ 71 (79)
T 2uyz_B 3 YIKLKVIGQDSSE-I---HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQR---I-ADNHTPKELGMEEEDVIE 71 (79)
T ss_dssp EEEEEEECTTCCE-E---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCHHHHTCCTTEEEE
T ss_pred eEEEEEECCCCCE-E---EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC---CEE---e-CCCCCHHHcCCCCCCEEE
Confidence 4678888654331 3 688999999999999999999999999999986 776 4 578999999999999999
Q ss_pred EEe
Q psy13905 96 VEG 98 (248)
Q Consensus 96 VvD 98 (248)
++-
T Consensus 72 l~~ 74 (79)
T 2uyz_B 72 VYQ 74 (79)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 82
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=2.4e-10 Score=89.82 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=62.7
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+...|+|....... . +.++++++||.+||++|+..+|+||+.|||++. |+. | +|+.+|++|++.+|++|
T Consensus 8 ~~~~i~vk~l~G~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 8 GEFQIFAKTLTGKT-I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA---GKQ---L-EDGRTLSDYNIQRESTL 76 (114)
T ss_dssp CCCEEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTTTTTCCSSCEE
T ss_pred CcEEEEEEeCCCcE-E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEE
Confidence 34567777544331 3 789999999999999999999999999999986 765 4 57899999999999999
Q ss_pred EEEeCC
Q psy13905 95 FVEGNY 100 (248)
Q Consensus 95 hVvD~~ 100 (248)
||+...
T Consensus 77 ~l~~~~ 82 (114)
T 2kdi_A 77 HLVLRL 82 (114)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 999853
No 83
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.10 E-value=3.1e-10 Score=91.22 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=75.1
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|.+..... . +.++++++||.+||++|+..+|+||+.|+|.+. |+. | +|+.+|++|++.+|++|||+
T Consensus 2 ~i~vk~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~---g~~---L-~d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC---CeE---C-cCcccHHHhccCCCCeeEEE
Confidence 56777643321 3 789999999999999999999999999999986 665 4 67899999999999999999
Q ss_pred eCC-------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh
Q psy13905 98 GNY-------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK 134 (248)
Q Consensus 98 D~~-------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k 134 (248)
... +.. +..+.-.++++ ..+||..+|++..
T Consensus 71 ~~~~~~~~i~Vk~-~~g~~~~~~v~------~~~tv~~lK~~i~ 107 (152)
T 3b08_A 71 LRLRGGMQIFVKT-LTGKTITLEVE------PSDTIENVKAKIQ 107 (152)
T ss_dssp ECCTTCEEEEEEE-SSSCEEEEEEC------TTCBHHHHHHHHH
T ss_pred eecccccceeeee-cCCCEEEEEeC------CCCcHHHHHHHHH
Confidence 864 111 01223344444 3489999998754
No 84
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.09 E-value=1.5e-10 Score=88.14 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=63.2
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
+....+.|+|.+..... . ..++.++.||.+||++|+..+|+||++|||+|. |+. | .|+.+|++|++++|
T Consensus 17 ~~~~~m~I~Vk~~~g~~-~---~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~---Gk~---L-~d~~tl~dy~i~~g 85 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSE-I---HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQR---I-ADNHTPKELGMEEE 85 (97)
T ss_dssp --CCEEEEEEECTTCCE-E---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCHHHHTCCTT
T ss_pred CCCCcEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC---CeE---c-CCCCCHHHCCCCCC
Confidence 34456889998654331 3 688999999999999999999999999999986 776 4 68899999999999
Q ss_pred cEEEEEe
Q psy13905 92 MTLFVEG 98 (248)
Q Consensus 92 ~~IhVvD 98 (248)
++|||+-
T Consensus 86 ~~I~l~~ 92 (97)
T 1wyw_B 86 DVIEVYQ 92 (97)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9999974
No 85
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.08 E-value=2.7e-10 Score=94.66 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=79.1
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...+.|+|....... . ..++++++||.+||++|+..+|+||++|+|++. |+. | +|+.+|++|++.+|++
T Consensus 18 ~~~m~i~Vk~~~g~~-~---~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~---g~~---L-~d~~tL~~~~i~~~~~ 86 (172)
T 3u30_A 18 GSHMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST 86 (172)
T ss_dssp -CCEEEEEEETTTEE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTGGGTCCTTCE
T ss_pred CCcEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---Ccc---c-cccCCHhHcCCcccce
Confidence 446788998643321 3 689999999999999999999999999999985 665 4 6889999999999999
Q ss_pred EEEEeCC-------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh
Q psy13905 94 LFVEGNY-------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK 134 (248)
Q Consensus 94 IhVvD~~-------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k 134 (248)
||++-.- +... ..+.-.++++ ..+||...|++..
T Consensus 87 l~l~~~~~gg~~i~Vk~~-~g~~~~l~v~------~~~tV~~lK~~I~ 127 (172)
T 3u30_A 87 LHLVLRLRGGMQIFVKTL-TGKTITLEVE------PSDTIENVKAKIQ 127 (172)
T ss_dssp EEEEECCCCCEEEEEEES-SCCEEEEEEC------TTCBHHHHHHHHH
T ss_pred eeeeecccccccceeecc-cCcceeEEec------CCCCHHHHHHHHH
Confidence 9999653 1110 2344455555 4589999998875
No 86
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.07 E-value=2.3e-10 Score=86.28 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=61.5
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+...++|+|++..... . +.++++++||.+||++|+..+ +++|||+|. |+. |.+++.+|++|+|++|+
T Consensus 4 ~~~~m~i~Vk~~~g~~-~---~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~---Gk~---L~D~~~tL~~y~i~~g~ 70 (95)
T 1wia_A 4 GSSGINVRLKFLNDTE-E---LAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQ---GRL---LQDPARTLSSLNITNNC 70 (95)
T ss_dssp CCCSEEEEEEETTTEE-E---EEEECSSSBHHHHHHHHSSST---TTTCEEEET---TEE---CCCSSCBTTTTTCCTTE
T ss_pred CCCeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHhhC---cCcEEEEEC---CEE---ccCCcCCHHHcCCCCCC
Confidence 3457899998643321 3 789999999999999999998 999999986 776 54444999999999999
Q ss_pred EEEEEeCC
Q psy13905 93 TLFVEGNY 100 (248)
Q Consensus 93 ~IhVvD~~ 100 (248)
+|||+...
T Consensus 71 ~i~l~~~~ 78 (95)
T 1wia_A 71 VIHCHRSP 78 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99999854
No 87
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.66 E-value=1.3e-11 Score=88.91 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=52.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
+.++++++||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|++.+|++||++
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA---GKE---L-PNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 688999999999999999999999999999986 665 4 57899999999999999986
No 88
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.07 E-value=1.7e-10 Score=89.50 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=60.9
Q ss_pred ceEEEEEEeCCC---CcccccceEEecC---------CCCHHHHHHHHHHHH--CCCCCC-eEEEEEeCCCceeeccCCC
Q psy13905 15 GTVELYITNSKD---KHESCLNLKKLKL---------NNTIGELKQKLELLT--GQMSSN-MTISLYNRNHDLVSHLSDN 79 (248)
Q Consensus 15 ~~V~v~ItS~~~---s~~s~~~E~r~~~---------~~TI~eLK~KLe~~t--Gipp~~-mrL~l~~~~g~~i~~L~~d 79 (248)
+.+.|+|++... .. . +..|++ ++||.+||++|+..+ |+||+. |||+|. |+. | .|
T Consensus 11 ~~~~i~Vk~~~~~~~~~-~---~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~---Gk~---L-~D 79 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPK-S---ILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC---GRK---L-KD 79 (107)
T ss_dssp CSCCEEEEETTCTTSCC-E---EECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET---TEE---C-CT
T ss_pred CceEEEEEeCCCCCccE-E---EEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC---CeE---C-CC
Confidence 357788886544 21 2 567554 599999999999999 999999 999986 776 4 67
Q ss_pred CcccCCCCCCCCcEEEEEeC
Q psy13905 80 SMLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 80 ~~~L~~y~i~dG~~IhVvD~ 99 (248)
+.+|.+|++++|++||++..
T Consensus 80 ~~tL~~y~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 80 DQTLDFYGIQPGSTVHVLRK 99 (107)
T ss_dssp TCBHHHHTCCTTCEEEEEES
T ss_pred CCcHHHcCCCCCCEEEEEeC
Confidence 89999999999999999975
No 89
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-10 Score=92.13 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=63.6
Q ss_pred CceEEEEEE-eCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 14 GGTVELYIT-NSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 14 ~~~V~v~It-S~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
++.++|.|. ++.... . +..|+++.||.+||++|...+|+|++.|+|+|. |+. | .|+.+|.+||+++|.
T Consensus 13 ~~~itvkv~l~~~~~k-~---tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~---GKi---L-KD~eTL~~~gIk~g~ 81 (118)
T 2daf_A 13 DSLATVKVVLIPVGQE-I---VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS---GKI---L-KNNETLVQHGVKPQE 81 (118)
T ss_dssp SSCEEEEEEETTTCCE-E---EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET---TEE---E-CSSCCHHHHSCCSSC
T ss_pred CccEEEEEEEcCCCcE-E---EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC---CeE---c-CCcchHHHcCCCCCC
Confidence 455677765 433332 4 789999999999999999999999999999997 887 4 688999999999999
Q ss_pred EEEEEeCC
Q psy13905 93 TLFVEGNY 100 (248)
Q Consensus 93 ~IhVvD~~ 100 (248)
+||++-.+
T Consensus 82 TIhLvi~s 89 (118)
T 2daf_A 82 IVQVEIFS 89 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999644
No 90
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.06 E-value=5e-10 Score=91.55 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=77.7
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+.|+|.+..... . ..+++++.||.+||++|+..+|+||++|||+++. .|+. | +|+.+|++|++.+|++||+
T Consensus 3 m~i~vk~~~g~~-~---~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~---L-~d~~tL~~y~i~~~~~l~l 73 (159)
T 3rt3_B 3 WDLTVKMLAGNE-F---QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLL 73 (159)
T ss_dssp CEEEEEETTSCE-E---EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CTTSCGGGGTCCTTCEEEE
T ss_pred eEEEEEECCCCE-E---EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCC---C-CCCCCHHHcCCCCCCEEEE
Confidence 467787543331 3 6899999999999999999999999999999541 2555 4 7899999999999999999
Q ss_pred EeCC--------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh
Q psy13905 97 EGNY--------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK 134 (248)
Q Consensus 97 vD~~--------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k 134 (248)
+-.. ... +..+.-.++++. .+||...|++..
T Consensus 74 ~~~~~~~~m~i~vk~-~~g~~~~~~v~~------~~tV~~lK~~i~ 112 (159)
T 3rt3_B 74 VVDKSDEPLSILVRN-NKGRSSTYEVRL------TQTVAHLKQQVS 112 (159)
T ss_dssp EECCCCCCEEEEEEC-TTSCEEEEEECT------TSBHHHHHHHHH
T ss_pred EccCCCCcEEEEEEC-CCCCEEEEEeCC------CCCHHHHHHHHH
Confidence 9762 112 023444566665 499999998765
No 91
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=1.1e-10 Score=91.11 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=62.0
Q ss_pred ceEEEEEEeC-CCCcccccceEEecCCCCHHHHHHHHHHHHCCCC---------------CCeEEEEEeCCCceeeccCC
Q psy13905 15 GTVELYITNS-KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS---------------SNMTISLYNRNHDLVSHLSD 78 (248)
Q Consensus 15 ~~V~v~ItS~-~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp---------------~~mrL~l~~~~g~~i~~L~~ 78 (248)
..++|+|... ... . +..++++.||.+||++|+..+|+|| .+|+|++. |+. |.+
T Consensus 6 ~~M~I~Vk~l~g~~--~---~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~---Gk~---L~d 74 (105)
T 1v2y_A 6 SGMTVRVCKMDGEV--M---PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA---GEK---LTE 74 (105)
T ss_dssp CSEEEEEECSSSCE--E---EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS---SCE---ECC
T ss_pred CcEEEEEEecCCCE--E---EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC---CcC---ccC
Confidence 4578888753 333 3 7999999999999999999999998 46799975 776 667
Q ss_pred CCcccCCCCCCCCcEEEEEeC
Q psy13905 79 NSMLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 79 d~~~L~~y~i~dG~~IhVvD~ 99 (248)
|.++|.+|+|++|++||++-.
T Consensus 75 D~~tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 75 DRKKLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp SSSBHHHHTCCSSEEEEEEEC
T ss_pred CcCCHHHcCCCCCCEEEEEeh
Confidence 889999999999999999863
No 92
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=88.99 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=61.7
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF 95 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih 95 (248)
++.+.|+..... . ..+++++.||.+||++|+..|||||++|||.+. +.|+ | .|+++|++|+|++|++||
T Consensus 9 m~~~~vk~~Gk~--~---~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~-~~gk----L-~D~~tLs~~~I~~gstL~ 77 (100)
T 2dzm_A 9 MLDFRVEYRDRN--V---DVVLEDTCTVGEIKQILENELQIPVSKMLLKGW-KTGD----V-EDSTVLKSLHLPKNNSLY 77 (100)
T ss_dssp EEEEEEECSSCE--E---EEEEETTSBHHHHHHHHHHHHCCCTTTCCEECC-SSSC----C-CTTSBHHHHCCCSEEEEE
T ss_pred eEEEEEEeCCeE--E---EEEECCCCcHHHHHHHHHHHHCCChhHeEEEcc-CCCC----C-CCcCCHHHcCCCCCCEEE
Confidence 577778876665 4 688999999999999999999999999999753 2243 3 678999999999999999
Q ss_pred EEeCC
Q psy13905 96 VEGNY 100 (248)
Q Consensus 96 VvD~~ 100 (248)
++=..
T Consensus 78 lvl~~ 82 (100)
T 2dzm_A 78 VLTPD 82 (100)
T ss_dssp ECCSS
T ss_pred EEecC
Confidence 98554
No 93
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.04 E-value=4e-10 Score=89.63 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=53.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC-------CcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN-------EMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d-------G~~IhVvD 98 (248)
...+.++.||.+||+||+.++||||++|||++. |+. .+|+++|++|+|++ +++||++=
T Consensus 15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~---Gk~----LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 15 FTDAKESSTVFELKRIVEGILKRPPDEQRLYKD---DQL----LDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET---TEE----CCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC---CeE----CCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 678899999999999999999999999999975 665 48999999999999 99999983
No 94
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.03 E-value=5.7e-10 Score=91.19 Aligned_cols=73 Identities=22% Similarity=0.380 Sum_probs=59.8
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
+.+.|+|.+.... .. ..+++++.||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|++++|++|
T Consensus 80 ~~m~i~vk~~~g~-~~---~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---G~~---L-~d~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 80 EPLSILVRNNKGR-SS---TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKP---L-EDQLPLGEYGLKPLSTV 148 (159)
T ss_dssp CCEEEEEECTTSC-EE---EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEE
T ss_pred CcEEEEEECCCCC-EE---EEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC---Cee---c-CCCCCHHHcCCCCCCEE
Confidence 3455666653322 13 689999999999999999999999999999985 766 4 67899999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
|++-
T Consensus 149 ~l~~ 152 (159)
T 3rt3_B 149 FMNL 152 (159)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9973
No 95
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.02 E-value=6.8e-10 Score=92.97 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=60.0
Q ss_pred EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
.|+|.+..... . ..++++++||.+||++|+..+|+||++|||++. |+. | +|+.+|++|++++|++||++
T Consensus 2 qI~Vk~~~Gk~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKT-I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET---TEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCE-E---EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC---Ccc---c-cCcCcHHHcCCCCCCEEEEE
Confidence 56777643221 3 689999999999999999999999999999986 766 4 67899999999999999998
Q ss_pred eC
Q psy13905 98 GN 99 (248)
Q Consensus 98 D~ 99 (248)
-.
T Consensus 71 lr 72 (169)
T 3l0w_B 71 LR 72 (169)
T ss_dssp EC
T ss_pred EE
Confidence 53
No 96
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.01 E-value=2.8e-10 Score=90.57 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=58.8
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC-------
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE------- 89 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~------- 89 (248)
+-|+|...... . ...+.++.||.+||+||+.++||||++|||++. |+. .+|+++|++|+|+
T Consensus 3 mfl~ir~~ktt--i---~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~---Gk~----LeD~~TLsdy~I~~~~a~~q 70 (118)
T 2fnj_B 3 VFLMIRRHKTT--I---FTDAKESSTVFELKRIVEGILKRPPEEQRLYKD---DQL----LDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEEBTEE--E---EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET---TEE----CCTTSBHHHHTCCTTTSBTT
T ss_pred EEEEEecCCEE--E---EEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC---CeE----CCCCCCHHHcCcccccccCC
Confidence 34555544333 3 688999999999999999999999999999964 776 4799999999999
Q ss_pred CCcEEEEEeC
Q psy13905 90 NEMTLFVEGN 99 (248)
Q Consensus 90 dG~~IhVvD~ 99 (248)
.+++||++=.
T Consensus 71 ~~stL~L~lr 80 (118)
T 2fnj_B 71 APATVGLAFR 80 (118)
T ss_dssp BCEEEEEEEB
T ss_pred CCCEEEEEec
Confidence 7999999843
No 97
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.99 E-value=7.2e-10 Score=92.07 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=58.1
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+.|+|.+.... .. ..++++++||.+||++|+..+|+||++|+|++. |+. | +|+.+|++|++++|++||+
T Consensus 97 ~~i~Vk~~~g~-~~---~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~~---L-~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 97 MQIFVKTLTGK-TI---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp EEEEEEESSCC-EE---EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEE---C-CTTSBSGGGTCCTTCEEEE
T ss_pred ccceeecccCc-ce---eEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC---Ccc---C-CCCCcHHHhCCCCCCEEEE
Confidence 44555543222 13 689999999999999999999999999999986 765 4 6889999999999999998
Q ss_pred E
Q psy13905 97 E 97 (248)
Q Consensus 97 v 97 (248)
+
T Consensus 166 ~ 166 (172)
T 3u30_A 166 V 166 (172)
T ss_dssp C
T ss_pred E
Confidence 6
No 98
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=82.51 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=61.5
Q ss_pred eEEEEEEeCCCCcccccceE-EecCCCCHHHHHHHHHHH-HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 16 TVELYITNSKDKHESCLNLK-KLKLNNTIGELKQKLELL-TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~-r~~~~~TI~eLK~KLe~~-tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
.+.|+|.+.......| +. .++++.||.+||++|+.. .|+||++|||+|. ..|+. | +|+.+|++|++.+|++
T Consensus 10 ~M~I~Vk~~~g~~~~~--~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~-~~Gk~---L-~D~~tL~~y~i~~~st 82 (88)
T 2dzj_A 10 HYEVEILDAKTREKLC--FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD-PKGKS---L-KDEDVLQKLPVGTTAT 82 (88)
T ss_dssp CEEEEEEESSSCCCCE--EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS-TTSCC---C-CTTCBTTTSSCCSEEE
T ss_pred EEEEEEECCCCCEEee--EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec-CCCcC---c-CCCCCHHHcCCCCCCE
Confidence 3678888654331111 47 899999999999999995 8999999999874 34665 4 6889999999999999
Q ss_pred EEEEeC
Q psy13905 94 LFVEGN 99 (248)
Q Consensus 94 IhVvD~ 99 (248)
|||-|.
T Consensus 83 l~~KDL 88 (88)
T 2dzj_A 83 LYFRDL 88 (88)
T ss_dssp EEECCC
T ss_pred EEEEeC
Confidence 999873
No 99
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.96 E-value=1.7e-09 Score=86.90 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=59.2
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+.|+|.+.... .. +.+++++.||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|++.+|++||+
T Consensus 77 ~~i~Vk~~~g~-~~---~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~---g~~---L-~d~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 77 MQIFVKTLTGK-TI---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL 145 (152)
T ss_dssp EEEEEEESSSC-EE---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred cceeeeecCCC-EE---EEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC---CEE---C-CCCCCHHHcCCCCCCEEEE
Confidence 45666643322 13 789999999999999999999999999999985 765 4 6889999999999999999
Q ss_pred Ee
Q psy13905 97 EG 98 (248)
Q Consensus 97 vD 98 (248)
+-
T Consensus 146 ~~ 147 (152)
T 3b08_A 146 VL 147 (152)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 100
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.96 E-value=9.2e-10 Score=94.11 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=60.3
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+.|+|.+..... . ..+++++.||.+||++|+..+|+||++|+|++. |+. | +|+.+|++|+|++|++||+
T Consensus 106 MqI~VKtl~Gkt-~---~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~---Gk~---L-~D~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 106 GQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL 174 (189)
T ss_dssp EEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEE---C-CTTCBGGGGTCCTTCEEEE
T ss_pred eeeeeecCCCCE-E---EEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC---CEE---C-CCCCCHHHCCCCCCCEEEE
Confidence 567787643321 3 689999999999999999999999999999986 766 4 6789999999999999999
Q ss_pred Ee
Q psy13905 97 EG 98 (248)
Q Consensus 97 vD 98 (248)
+-
T Consensus 175 vl 176 (189)
T 3q3f_A 175 VL 176 (189)
T ss_dssp CC
T ss_pred EE
Confidence 84
No 101
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.95 E-value=7.5e-11 Score=94.23 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred EEEEEeCC-CCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 18 ELYITNSK-DKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 18 ~v~ItS~~-~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
.|+|.+.. .. . +.++++++||.+||++|+..+|+||+.|+|++. |+. | +|+.+|++|+|++|++|||
T Consensus 2 ~I~Vk~~~G~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~~I~~gsti~l 69 (128)
T 3u5e_m 2 QIFVKTLTGKT--I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL 69 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCE--E---EEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC---CEE---C-CCCCchhhhccCCCCEEEE
Confidence 45666532 32 3 688999999999999999999999999999987 765 4 6889999999999999999
Q ss_pred EeC
Q psy13905 97 EGN 99 (248)
Q Consensus 97 vD~ 99 (248)
+-.
T Consensus 70 ~~r 72 (128)
T 3u5e_m 70 VLR 72 (128)
T ss_dssp ---
T ss_pred EEE
Confidence 853
No 102
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.94 E-value=2.6e-09 Score=97.56 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=66.8
Q ss_pred eeeeecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCC
Q psy13905 6 EYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQ 85 (248)
Q Consensus 6 ~~~~~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~ 85 (248)
|..-.-...+.++|+|.+..... . +.++++++||.+||++|+..+|+||++|||++. |+. | +|+.+|++
T Consensus 223 E~~~A~~~~~~MqI~VKtl~Gk~-~---~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~---Gk~---L-~D~~TLsd 291 (307)
T 3ai5_A 223 EFVTAAGITGSMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSD 291 (307)
T ss_dssp EEEEEESSCCCEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBTGG
T ss_pred eehhccCCCCeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC---Cee---c-CCCCCHHH
Confidence 33333345667888998743331 3 789999999999999999999999999999986 765 4 68899999
Q ss_pred CCCCCCcEEEEEe
Q psy13905 86 YPVENEMTLFVEG 98 (248)
Q Consensus 86 y~i~dG~~IhVvD 98 (248)
|+|++|++|||+-
T Consensus 292 ygI~~gstL~Lvl 304 (307)
T 3ai5_A 292 YNIQKESTLHLVL 304 (307)
T ss_dssp GTCCTTCEEEEEC
T ss_pred cCCCCCCEEEEEE
Confidence 9999999999973
No 103
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.91 E-value=1.5e-09 Score=80.80 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=58.6
Q ss_pred EEEEEeCCCCcccccceEE-ecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 18 ELYITNSKDKHESCLNLKK-LKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r-~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+|.|.+..-. . ... |+++.||.+||++|+..+|+||+.|+|.+.. .++. ..+.+++.+|.+|||.+|.+|||
T Consensus 2 ~i~vr~~~G~--~---~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-p~k~-l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGT--H---LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-PPEC-LDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEE--E---EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-CCCC-CCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCC--E---EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-CCcc-cccCCCCCCHHHcCCCCCCEEEE
Confidence 4667654433 2 345 8899999999999999999999999998742 2344 22335789999999999999999
Q ss_pred EeC
Q psy13905 97 EGN 99 (248)
Q Consensus 97 vD~ 99 (248)
.+.
T Consensus 75 ~~~ 77 (86)
T 2kzr_A 75 EED 77 (86)
T ss_dssp CCC
T ss_pred EeC
Confidence 985
No 104
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.87 E-value=1.9e-09 Score=98.75 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=62.4
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEE---EEeCCCceeeccCCCCcccCCCCCCC
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTIS---LYNRNHDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~---l~~~~g~~i~~L~~d~~~L~~y~i~d 90 (248)
...|+|.|++.... . +..++++.||++||++|+..|||||++|||+ +. |+. ..|+.+|++|+|++
T Consensus 3 ~~~i~i~Vk~~g~~--~---~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~---Gk~----l~D~~~L~~~~ik~ 70 (320)
T 3shq_A 3 VKEVVVIVKWSGKE--Y---PVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYK---GKT----AADNVKISALELKP 70 (320)
T ss_dssp -CEEEEEEEETTEE--E---EEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSS---SSB----CCTTSBTTSSCCC-
T ss_pred CceEEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccC---Ccc----cCccccHHHcCCCC
Confidence 34688999986665 4 7899999999999999999999999999999 43 655 46889999999999
Q ss_pred CcEEEEEeCC
Q psy13905 91 EMTLFVEGNY 100 (248)
Q Consensus 91 G~~IhVvD~~ 100 (248)
|++||++-+.
T Consensus 71 g~~l~L~gs~ 80 (320)
T 3shq_A 71 NFKLMMVGST 80 (320)
T ss_dssp -CEEEEECCC
T ss_pred CCEEEEEccc
Confidence 9999999764
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.87 E-value=2.2e-10 Score=94.72 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred EEEEEeC-CCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 18 ELYITNS-KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 18 ~v~ItS~-~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
.|+|.+. ... . ..++++++||.+||++|+..+|+||++|+|++. |+. | +|+.+|++|+|++|++|||
T Consensus 2 qI~VK~l~G~~--~---~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dygI~~gstL~L 69 (152)
T 3u5c_f 2 QIFVKTLTGKT--I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCE--E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEE---c-cccCcHHHcCCCCCCEEEE
Confidence 4566653 232 3 688999999999999999999999999999987 765 4 6789999999999999999
Q ss_pred Ee
Q psy13905 97 EG 98 (248)
Q Consensus 97 vD 98 (248)
+-
T Consensus 70 vl 71 (152)
T 3u5c_f 70 VL 71 (152)
T ss_dssp --
T ss_pred Ee
Confidence 86
No 106
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.86 E-value=7.4e-09 Score=82.02 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=61.0
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHH------HHCC--CCCCeEEEEEeCCCceeeccCCCCcccC
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLEL------LTGQ--MSSNMTISLYNRNHDLVSHLSDNSMLLG 84 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~------~tGi--pp~~mrL~l~~~~g~~i~~L~~d~~~L~ 84 (248)
....+.|+|...... .. +..++++.||.+||++|+. .+|+ ||++|||+|. |+. | +|+.+|+
T Consensus 13 ~~~~m~I~vKtl~G~-t~---~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~---GK~---L-eD~~TL~ 81 (116)
T 1wgh_A 13 PADMINLRLILVSGK-TK---EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ---GRF---L-HGNVTLG 81 (116)
T ss_dssp CSSSEEEEEECSSSC-EE---EEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET---TEE---E-CSSCBTT
T ss_pred CCCeEEEEEEeCCCC-EE---EEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC---CcC---C-CCCCcHH
Confidence 345688888853323 14 7999999999999999999 7786 6999999997 887 4 7889999
Q ss_pred CCCCCCC--cEEEEEe
Q psy13905 85 QYPVENE--MTLFVEG 98 (248)
Q Consensus 85 ~y~i~dG--~~IhVvD 98 (248)
+|+|..| .+||++-
T Consensus 82 ~y~I~~~~~~tlhLvl 97 (116)
T 1wgh_A 82 ALKLPFGKTTVMHLVA 97 (116)
T ss_dssp TTTCCSSCEEEEEEEE
T ss_pred HcCCCCCCceEEEEEc
Confidence 9999876 5899884
No 107
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.83 E-value=4.3e-09 Score=84.57 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=60.2
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHH-----HHHHCCCC--CCeEEEEEeCCCceeeccCCCCcccCCCC
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKL-----ELLTGQMS--SNMTISLYNRNHDLVSHLSDNSMLLGQYP 87 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KL-----e~~tGipp--~~mrL~l~~~~g~~i~~L~~d~~~L~~y~ 87 (248)
..+.|+|......... ..+++++.||.+||+|| +..+|+|+ ++|||+|. |+. .+|+++|++|+
T Consensus 15 ~~~~i~~kt~~G~~i~---~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~---GK~----LeD~~TLsdy~ 84 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIG---PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA---GKV----LENSKTVKDYR 84 (126)
T ss_dssp CCEEEEEEETTSCEEE---EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET---TEE----CCTTSBGGGGS
T ss_pred ccEEEEEEECCCCEEE---eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC---CeE----CcCCCcHHHcC
Confidence 4667888754332112 58899999999999999 56789997 79999987 887 47999999999
Q ss_pred CCCC------cEEEEEe
Q psy13905 88 VENE------MTLFVEG 98 (248)
Q Consensus 88 i~dG------~~IhVvD 98 (248)
|+.| .+|||+-
T Consensus 85 I~~~~~~~~v~tmhlVl 101 (126)
T 1se9_A 85 SPVSNLAGAVTTMHVII 101 (126)
T ss_dssp CCTTSCTTCCEEEEEEE
T ss_pred CCcCCccCCcEEEEEEe
Confidence 9999 7899986
No 108
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=82.09 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=59.9
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHH------HHCCC--CCCeEEEEEeCCCceeeccCCCCcccCCCC
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLEL------LTGQM--SSNMTISLYNRNHDLVSHLSDNSMLLGQYP 87 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~------~tGip--p~~mrL~l~~~~g~~i~~L~~d~~~L~~y~ 87 (248)
.+.|+|...... .. +..++++.||.+||++|+. .+|+| |++|||+|. |+. | +|+++|++|+
T Consensus 17 ~m~I~vktl~G~-~~---~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~---GK~---L-eD~~TL~~y~ 85 (125)
T 2gow_A 17 MINLRLILVSGK-TK---EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ---GRF---L-HGNVTLGALK 85 (125)
T ss_dssp CEEEEEECTTSC-EE---EEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS---SSE---E-ESSCBTGGGC
T ss_pred eEEEEEEeCCCC-EE---EEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC---CcC---C-CCCCcHHHcC
Confidence 578888754323 14 7999999999999999998 78984 899999987 887 4 6889999999
Q ss_pred CCCCc--EEEEEeC
Q psy13905 88 VENEM--TLFVEGN 99 (248)
Q Consensus 88 i~dG~--~IhVvD~ 99 (248)
|+.|. +|||+-.
T Consensus 86 I~~~~~~tlhlv~r 99 (125)
T 2gow_A 86 LPFGKTTVMHLVAR 99 (125)
T ss_dssp CCTTSEEEEEEEEC
T ss_pred CCCCCceEEEEEec
Confidence 99776 7888753
No 109
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.58 E-value=3.4e-08 Score=92.18 Aligned_cols=74 Identities=11% Similarity=0.203 Sum_probs=60.2
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHH---HHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLEL---LTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~---~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d 90 (248)
++.++|+|++..... . ...++++.||.+||.||+. .+|+|++.|||+|. |+. | .|+++|.+|+|++
T Consensus 5 ~~~M~I~VKtl~Gk~-~---~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~---GK~---L-~D~~tL~dygI~~ 73 (368)
T 1oqy_A 5 SSAVTITLKTLQQQT-F---KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA---GKI---L-SDDVPIRDYRIDE 73 (368)
T ss_dssp -CCCCEEEEETTTEE-E---EECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS---SSE---E-CSSSBTTTTCCCT
T ss_pred CceEEEEEEeCCCCE-E---EEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC---Cee---c-CCcCCHHHcCCCC
Confidence 456788888753331 3 6889999999999999999 68899999999986 776 4 5789999999999
Q ss_pred CcEE-EEEe
Q psy13905 91 EMTL-FVEG 98 (248)
Q Consensus 91 G~~I-hVvD 98 (248)
|++| |++-
T Consensus 74 gstIv~lv~ 82 (368)
T 1oqy_A 74 KNFVVVMVT 82 (368)
T ss_dssp TSCEEEEEE
T ss_pred CCEEEEEEe
Confidence 9988 6653
No 110
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.45 E-value=6.2e-07 Score=68.16 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
....|+|.|.+.... .. ..++.++.++..|++++....|+|+++|||+|. |+. | .++.|+.+|++++|.
T Consensus 4 ~~~~i~ikVk~~~g~-~i---~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd---G~~---l-~~~~Tp~dl~medgD 72 (94)
T 2io1_B 4 MNDHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDED 72 (94)
T ss_dssp --CEEEEEEECTTSC-EE---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCTTTTTCCTTC
T ss_pred CCCeEEEEEECCCCC-EE---EEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCC
Confidence 345688888864433 13 689999999999999999999999999999986 776 3 677999999999999
Q ss_pred EEEEEeC
Q psy13905 93 TLFVEGN 99 (248)
Q Consensus 93 ~IhVvD~ 99 (248)
+|||+-.
T Consensus 73 ~Idv~~~ 79 (94)
T 2io1_B 73 TIDVFQQ 79 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999864
No 111
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.36 E-value=1.8e-06 Score=62.03 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=60.0
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
|+|.|.+.... .. ..++.++.++..|+++.....|+|++++||.|. |+. | .++.|+++|++++|.+|||
T Consensus 2 i~lkV~~~~g~-~v---~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~---l-~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSC-EE---EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET---TEE---C-CTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEECCCCC-EE---EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC---CEE---c-CCCCCHHHcCCCCCCEEEE
Confidence 67888864333 13 789999999999999999999999999999985 776 3 6779999999999999998
Q ss_pred E
Q psy13905 97 E 97 (248)
Q Consensus 97 v 97 (248)
.
T Consensus 71 ~ 71 (72)
T 1wm3_A 71 F 71 (72)
T ss_dssp E
T ss_pred E
Confidence 5
No 112
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.30 E-value=2.1e-06 Score=62.97 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=61.8
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
..|+|.|.+...+... ..++.++.++..|+++.....|++++++||.|. |+. | .++.|+.+|++++|.+|
T Consensus 6 ~~i~ikV~~~~g~~~i---~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~---l-~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 6 QELRLRVQGKEKHQML---EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD---GTK---L-SGKELPADLGLESGDLI 75 (79)
T ss_dssp CCEEEEEECSSTTCEE---EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET---TEE---C-CSCCCHHHHTCCTTCEE
T ss_pred CEEEEEEEeCCCCEEE---EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCCEE
Confidence 4688888875442113 688999999999999999999999999999985 776 3 67899999999999999
Q ss_pred EEE
Q psy13905 95 FVE 97 (248)
Q Consensus 95 hVv 97 (248)
||.
T Consensus 76 dv~ 78 (79)
T 3a4r_A 76 EVW 78 (79)
T ss_dssp EEE
T ss_pred EEe
Confidence 985
No 113
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.28 E-value=9.5e-08 Score=81.63 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
...++++.||.+||++|+..+||||++|+|+|. |+. | .|+.+|+ ++++||++=
T Consensus 14 tLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~---GK~---L-eD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 14 IYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN---GFI---A-PNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEECCcChHHHHHHHHHHHhCcChhHEEEEec---CeE---C-CCCCccc-----CCCEEEEEE
Confidence 578999999999999999999999999999997 776 4 5778888 899999984
No 114
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.27 E-value=4e-06 Score=63.39 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=63.1
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...|+|.|.+...+ .. ..++.++.++..|+++.....|++++++||+|. |+. | .++.|+.+|++++|.+
T Consensus 15 ~~~i~ikV~~~~g~-~i---~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~---l-~~~~Tp~dl~medgD~ 83 (93)
T 2d07_B 15 NDHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDT 83 (93)
T ss_dssp CCEEEEEEECTTSC-EE---EEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCTTTTTCCTTEE
T ss_pred CCeEEEEEECCCCC-EE---EEEEccCCHHHHHHHHHHHHhCCCccceEEEEC---CEE---c-CCCCCHHHcCCCCCCE
Confidence 45788888864433 13 689999999999999999999999999999986 776 3 5789999999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|||+-
T Consensus 84 Idv~~ 88 (93)
T 2d07_B 84 IDVFQ 88 (93)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99974
No 115
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.25 E-value=4.1e-06 Score=63.31 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=63.2
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
..|+|.|.+.... .. ..++.++.++..|+++.....|+|++++||+|. |+. | .++.|+.+|++++|.+|
T Consensus 4 ~~i~ikVk~~~g~-~v---~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd---G~~---l-~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 4 DHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDTI 72 (91)
T ss_dssp CEEEEEEECTTSC-EE---EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET---TEE---C-CTTCCTTTTTCCTTEEE
T ss_pred CeEEEEEECCCCC-EE---EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCCEE
Confidence 4688889874433 13 789999999999999999999999999999985 776 3 67799999999999999
Q ss_pred EEEeC
Q psy13905 95 FVEGN 99 (248)
Q Consensus 95 hVvD~ 99 (248)
+|+-.
T Consensus 73 dv~~~ 77 (91)
T 2io0_B 73 DVFQQ 77 (91)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99864
No 116
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.16 E-value=5.6e-06 Score=64.09 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=63.2
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...|+|.|.+.... .. ..++.++.++..|+.+.....|++++++||+|. |+. | .++.|+.+|++++|.+
T Consensus 22 ~~~I~IkVk~~~g~-~i---~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd---G~~---l-~~~~Tp~dl~medgD~ 90 (104)
T 1wz0_A 22 NDHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDT 90 (104)
T ss_dssp SCCEEEEEECSSSC-EE---EEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS---SSB---C-CTTSCTTTTTCCTTEE
T ss_pred CCeEEEEEECCCCC-EE---EEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC---CEE---c-CCCCCHHHcCCCCCCE
Confidence 45788999864433 13 689999999999999999999999999999985 776 3 5789999999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|||+-
T Consensus 91 Idv~~ 95 (104)
T 1wz0_A 91 IDVFQ 95 (104)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99974
No 117
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.10 E-value=1.3e-05 Score=62.27 Aligned_cols=76 Identities=9% Similarity=0.100 Sum_probs=64.0
Q ss_pred cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905 11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d 90 (248)
.+....|+|.|.+ ... .. ..++.++.++..|+++.....|++++++||+|. |+. | .++.|..+|++++
T Consensus 26 ~~~~~~I~IkV~~-~g~-~i---~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd---G~r---l-~~~~Tp~dl~med 93 (106)
T 2eke_C 26 VKPETHINLKVSD-GSS-EI---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDMED 93 (106)
T ss_dssp CCCCSEEEEEEEC-SSC-EE---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCTTTTTCCT
T ss_pred CCCCCeEEEEEec-CCc-EE---EEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC---CeE---c-CCCCCHHHcCCCC
Confidence 3445678899988 332 23 688999999999999999999999999999985 776 3 5789999999999
Q ss_pred CcEEEEEe
Q psy13905 91 EMTLFVEG 98 (248)
Q Consensus 91 G~~IhVvD 98 (248)
|.+|+|+-
T Consensus 94 gD~Idv~~ 101 (106)
T 2eke_C 94 NDIIEAHR 101 (106)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEe
Confidence 99999974
No 118
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.99 E-value=8.3e-06 Score=63.83 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=64.2
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
....|+|.|.+.... .. ..++.++.++..|+++.....|++++++||+|. |+. | .++.|+.+|++++|.
T Consensus 23 ~~~~I~IkVk~~~g~-~i---~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd---G~~---L-~~~~Tp~dl~mEDgD 91 (110)
T 2k8h_A 23 ETALVAVKVVNADGA-EM---FFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD---GTP---I-DETKTPEELGMEDDD 91 (110)
T ss_dssp CCCCEEEEEEETTSC-CE---EEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS---SCB---C-CSSSHHHHHHCSSEE
T ss_pred CCCeEEEEEECCCCC-EE---EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCC
Confidence 345689999875433 14 799999999999999999999999999999985 776 3 577999999999999
Q ss_pred EEEEEeC
Q psy13905 93 TLFVEGN 99 (248)
Q Consensus 93 ~IhVvD~ 99 (248)
+|+|+-.
T Consensus 92 ~Idv~~~ 98 (110)
T 2k8h_A 92 VIDAMVE 98 (110)
T ss_dssp EEEEECC
T ss_pred EEEEEEc
Confidence 9999864
No 119
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.54 E-value=0.00019 Score=54.63 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=47.9
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
.-|.|=|..+.... ..-+.+..||..||++|+..|||||++|+|.|. |+.+. | +++++-..|+-.
T Consensus 13 kvvHVf~~~~a~~h---~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~e---g~~l~-l-~p~~~a~~~p~T 77 (94)
T 4efo_A 13 MVIHVFSLQQMTAH---KIYIHSYNTATIFHELVYKQTKIISSNQELIYE---GRRLV-L-EPGRLAQHFPKT 77 (94)
T ss_dssp EEEEEEETTTTEEE---EEEEETTCBHHHHHHHHHHHHCCCGGGEEEEET---TEEEC-C-CTTCBGGGSCCC
T ss_pred eeEEEEEcccceEE---EEEeccchHHHHHHHHHHHHhCCCHHHHHHHhC---CCccc-c-CCCCccccCCCC
Confidence 33445454444335 788999999999999999999999999999987 76533 3 566666666543
No 120
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.44 E-value=0.00063 Score=53.56 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=62.6
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...|+|.|.+...+. . ..++.++.++.-|+.......|+++.++|+.|. |+. | +++.|..++++++|.+
T Consensus 38 ~~~I~LKV~~qdg~e-v---~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD---G~r---I-~~~~TP~dL~MEDgD~ 106 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSE-I---HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQR---I-ADNHTPKELGMEEEDV 106 (115)
T ss_dssp -CEEEEEEECTTSCE-E---EEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET---TEE---C-CTTCCTTTTTCCTTCE
T ss_pred CCeEEEEEEcCCCCE-E---EEEEccCChHHHHHHHHHHHhCCChhhEEEEEC---CeE---C-CCCCCHHHcCCCCCCE
Confidence 457889998754432 3 588999999999999999999999999999985 776 3 5789999999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|+|.-
T Consensus 107 IdV~~ 111 (115)
T 3kyd_D 107 IEVYQ 111 (115)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99974
No 121
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00047 Score=59.16 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=64.2
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
|....|+|.|..... .. ..++.++.++..|+.....+.|+|+.++|+.|. |+. | .++.|..++++++|
T Consensus 25 ~~~~~I~LkV~~~g~--~v---~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd---G~r---I-~~~~TP~dL~MEdg 92 (200)
T 3pge_A 25 KPETHINLKVSDGSS--EI---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDMEDN 92 (200)
T ss_dssp CCCCCEEEEEECSSC--EE---EEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET---TEE---C-CTTCCTTTTTCCTT
T ss_pred CCCCeEEEEEecCCC--EE---EEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC---CEE---c-CCCCCHHHcCCCCC
Confidence 445678999964222 24 789999999999999999999999999999985 777 3 67899999999999
Q ss_pred cEEEEEeC
Q psy13905 92 MTLFVEGN 99 (248)
Q Consensus 92 ~~IhVvD~ 99 (248)
.+|+|+-.
T Consensus 93 D~Idv~~~ 100 (200)
T 3pge_A 93 DIIEAHRE 100 (200)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 99999954
No 122
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.35 E-value=6.6e-05 Score=55.18 Aligned_cols=75 Identities=9% Similarity=0.099 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+.|.|.|..-.+ ...++++.|+.+|+++|...+++++..|.|.+..+....+ . ..++.+|++.|+..|..|+|
T Consensus 5 m~lRvrs~~G~~-----Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l-~-~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 5 IIIRVQSPDGVK-----RITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEI-T-ASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCEEECSSEEE-----ECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGS-S-SCCCCTTTTTCCCTTCCEEC
T ss_pred EEEEEECCCCCE-----EEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcc-c-CCCCCCHHHcCCCCCCEEEE
Confidence 346666655432 3447899999999999999999999999887754331111 1 23788999999999999987
Q ss_pred Ee
Q psy13905 97 EG 98 (248)
Q Consensus 97 vD 98 (248)
..
T Consensus 78 ~~ 79 (80)
T 2pjh_A 78 FP 79 (80)
T ss_dssp --
T ss_pred ec
Confidence 53
No 123
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00073 Score=57.89 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=63.5
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
|....|+|.|...... . ..++.++.++..|+.......|+++.++|+.|. |+. | +++.|..+++++||
T Consensus 53 dp~e~InLKVk~dG~e--V---~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD---GqR---I-~~ddTPeDLdMEDG 120 (207)
T 3tix_A 53 KPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD---GIE---I-QADQTPEDLDMEDN 120 (207)
T ss_dssp --CCEEEEEEECSSCE--E---EEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET---TEE---C-CSSCCTTTTTCCTT
T ss_pred CCCCcEEEEEecCCCE--E---EEEEccCChHHHHHHHHHHHhCCCcccEEEEEC---Cee---c-CCCCCHHHcCCCCC
Confidence 4456789999642222 4 689999999999999999999999999999984 776 3 57899999999999
Q ss_pred cEEEEEeCC
Q psy13905 92 MTLFVEGNY 100 (248)
Q Consensus 92 ~~IhVvD~~ 100 (248)
.+|+|.-..
T Consensus 121 DtIDV~leQ 129 (207)
T 3tix_A 121 DIIEAHREQ 129 (207)
T ss_dssp EEEEECCCC
T ss_pred CEEEEEEec
Confidence 999999643
No 124
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.57 E-value=0.0071 Score=52.49 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=55.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN 99 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~ 99 (248)
...|+...||.+|+.++-.+++|+++ ..||..+...++. ..|.+.+.+|.++++.+|+.|.|.--
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 58899999999999999999999997 7999997655444 55777789999999999998887753
No 125
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.43 E-value=0.023 Score=41.83 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=60.3
Q ss_pred eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
.|++.+.|+.+. ++..+++++.||.+|=.---..-|||++ ..+|.|- |.. .+++.++.+|.+.||..|
T Consensus 9 ~~~~~~~~~~~~----dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD---GdR----Ldp~~tp~DlemeD~D~I 77 (82)
T 3goe_A 9 LITLLLRSSKSE----DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE---GEW----LDPNDQVQSTELEDEDQV 77 (82)
T ss_dssp EEEEEEEESSSC----CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET---TEE----CCTTSBGGGSSCCTTCEE
T ss_pred HHHHhhhccCCC----CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc---Ccc----cCccCChhhhCCcCCcee
Confidence 567777776543 3489999999999999999999999999 9999874 766 478999999999999998
Q ss_pred EEE
Q psy13905 95 FVE 97 (248)
Q Consensus 95 hVv 97 (248)
-|+
T Consensus 78 Dvm 80 (82)
T 3goe_A 78 SVV 80 (82)
T ss_dssp EEE
T ss_pred eee
Confidence 875
No 126
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.23 E-value=0.0078 Score=51.70 Aligned_cols=64 Identities=8% Similarity=0.113 Sum_probs=55.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
...|+...||.+|+.++-..++|+++ .+||..+...++. ..|++++.+|.++++.+|+.|.|.-
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~-~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTF-EPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEE-EECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-eecCCCCCCHHHhCCCCCCEEEEEE
Confidence 58899999999999999999999997 7999987654443 5677778999999999999888764
No 127
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.01 E-value=0.0011 Score=57.50 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred ecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 10 IMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 10 ~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
+++....|+|.|+..... . ..++.++.++.-|++......|++++++|+.|. |+. + .++.|..+++++
T Consensus 15 ~~~p~e~InLKV~qdGse--V---~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFD---GqR---I-~dddTPadL~ME 82 (227)
T 3v7o_A 15 EVKPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDME 82 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEeCCCCE--E---EEEEccCChHHHHHHHHHHHhCCCccceEEEEC---CEe---c-CCCCCHHHcCCC
Confidence 445566788888332222 4 688999999999999999999999999999986 776 3 578999999999
Q ss_pred CCcEEEEEeC
Q psy13905 90 NEMTLFVEGN 99 (248)
Q Consensus 90 dG~~IhVvD~ 99 (248)
||++|+|+-.
T Consensus 83 DGDtIDV~le 92 (227)
T 3v7o_A 83 DNDIIEAHRE 92 (227)
T ss_dssp ----------
T ss_pred CCCEEEEEec
Confidence 9999999854
No 128
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.83 E-value=0.016 Score=42.81 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=45.5
Q ss_pred ceEEecCCCCHHHHHHHHHHHHCCCCCC---eEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905 33 NLKKLKLNNTIGELKQKLELLTGQMSSN---MTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96 (248)
Q Consensus 33 ~E~r~~~~~TI~eLK~KLe~~tGipp~~---mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV 96 (248)
+..|+|..+|+.+|++-|-...+++... =.|.+.++ + . +..+.+.|.+|++.+|+.|.|
T Consensus 19 ~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK-~-~---~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 19 FDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNK-D-K---VFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGG-T-E---EEETTSBTGGGTCCTTCEEEE
T ss_pred EEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecC-C-E---EEcCCCEEeeCCcCCCCEEEE
Confidence 3899999999999999999999998631 12333311 1 1 346889999999999999876
No 129
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=95.74 E-value=0.034 Score=47.40 Aligned_cols=76 Identities=8% Similarity=0.063 Sum_probs=63.5
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
....|+|.|.+.... . ..++.++.++.-|++......|+|++++|+.|. |+. ..++.+.....++++.
T Consensus 18 ~~~~i~ikv~~~~~~--v---~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fd---G~~----i~~~~Tpk~L~~ed~d 85 (209)
T 3uf8_A 18 PETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR----IQADQTPEDLDMEDND 85 (209)
T ss_dssp CCSEEEEEEECSSCE--E---EEEEETTSCTHHHHHHHHHHHTCCGGGCEEEET---TEE----CCTTCCTTTTTCCTTE
T ss_pred CCCcEEEEEEcCCCE--E---EEEEeeCCHHHHHHHHHHHhhCCChheEEEEEC---CEe----ccCCCChHHhhhcccc
Confidence 456788888863222 4 689999999999999999999999999999986 776 3578889999999999
Q ss_pred EEEEEeCC
Q psy13905 93 TLFVEGNY 100 (248)
Q Consensus 93 ~IhVvD~~ 100 (248)
.|+|.-..
T Consensus 86 ~I~~~~eq 93 (209)
T 3uf8_A 86 IIEAHREQ 93 (209)
T ss_dssp EEEEECSC
T ss_pred cchhhccc
Confidence 99998643
No 130
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=95.45 E-value=0.057 Score=40.98 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=62.9
Q ss_pred cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905 11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d 90 (248)
.+....|+|.|.+...+... ..++.++.++.-|........|++++..|+.|. |.. + .++.|..+++++|
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v---~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD---G~r---I-~~~~TP~dLdMED 89 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTL---EVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD---GTK---L-SGRELPADLGMES 89 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEE---EEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET---TEE---C-CSCSCHHHHTCCT
T ss_pred CCCCCeEEEEEEcCCCCEEE---EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCC
Confidence 34566889999875543113 588899999999999999999999999999884 776 3 5778999999999
Q ss_pred CcEEEEE
Q psy13905 91 EMTLFVE 97 (248)
Q Consensus 91 G~~IhVv 97 (248)
|.+|-|.
T Consensus 90 gD~IDv~ 96 (97)
T 2jxx_A 90 GDLIEVW 96 (97)
T ss_dssp TEEEEEE
T ss_pred CCEEEEe
Confidence 9999874
No 131
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.43 E-value=0.037 Score=41.52 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=55.3
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCC-eEEEEEeCCCceeeccCCCC---cccCCCC--
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSN-MTISLYNRNHDLVSHLSDNS---MLLGQYP-- 87 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~-mrL~l~~~~g~~i~~L~~d~---~~L~~y~-- 87 (248)
.+.|+|.+..+..- . -.++++++|..+|++||..+.++++.+ ..|.+.|.+|..+. +..|. .-|..|.
T Consensus 4 ~~~vkvK~~~~gdi--~---~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it-isSd~EL~eAl~l~~~n 77 (89)
T 1vd2_A 4 GSQVRVKAYYRGDI--M---ITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT-VSSQLELEEAFRLYELN 77 (89)
T ss_dssp SSCEEEEEESSSCE--E---EEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE-CCSHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEeCCeE--E---EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc-ccCHHHHHHHHHHHHcc
Confidence 44677777766543 3 588999999999999999999998655 79999998888743 32222 2233333
Q ss_pred CCCCcEEEEEe
Q psy13905 88 VENEMTLFVEG 98 (248)
Q Consensus 88 i~dG~~IhVvD 98 (248)
=...-+|||..
T Consensus 78 ~~~~l~ihvf~ 88 (89)
T 1vd2_A 78 KDSELLIHVFP 88 (89)
T ss_dssp SCCCEEEEEEE
T ss_pred CCCCEEEEEcc
Confidence 34445888854
No 132
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.96 E-value=0.14 Score=41.32 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=46.7
Q ss_pred eEEecCCCCHHHHHHHHHHHH--CC------CCCCeEEEEEeCCCceeeccCCCC-----------cccCCCCCCCCcEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLT--GQ------MSSNMTISLYNRNHDLVSHLSDNS-----------MLLGQYPVENEMTL 94 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t--Gi------pp~~mrL~l~~~~g~~i~~L~~d~-----------~~L~~y~i~dG~~I 94 (248)
..++-.-.||.|+|+||-..+ |+ .+.++.|..+.+.+..+.--+.|. .+|..|+|.||++|
T Consensus 44 ~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l 123 (138)
T 2r2o_A 44 PVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATV 123 (138)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEE
T ss_pred eEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEE
Confidence 577778899999999998774 44 355778888755433211112222 28999999999999
Q ss_pred EEEeC
Q psy13905 95 FVEGN 99 (248)
Q Consensus 95 hVvD~ 99 (248)
-++-.
T Consensus 124 ~l~~~ 128 (138)
T 2r2o_A 124 ALVPC 128 (138)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98853
No 133
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.90 E-value=0.24 Score=35.82 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=59.6
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+.+..+|.|..+.-++ . .++|..+.||.+|..-+.. .|.++...+|.-..+ .+.+. ..+.+.+|.+.|+.++.
T Consensus 4 ~~~~~~i~iRlpdG~r-~---~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fP-rk~l~-~~d~~~TL~e~gL~p~a 76 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEF-L---ERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFP-RRDVT-QLDPNKSLLEVKLFPQE 76 (84)
T ss_dssp CCCEEEEEEECTTSCE-E---EEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSS-CCBGG-GSCTTSBTTTTTCCSEE
T ss_pred CCCeEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCC-CCCCc-CCCCCCCHHHCCCCCCC
Confidence 4567889999765442 4 7999999999999999998 788877777763222 23321 23667899999999999
Q ss_pred EEEEEe
Q psy13905 93 TLFVEG 98 (248)
Q Consensus 93 ~IhVvD 98 (248)
.|+|..
T Consensus 77 ~L~ve~ 82 (84)
T 3qx1_A 77 TLFLEA 82 (84)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999875
No 134
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=94.55 E-value=0.0063 Score=56.47 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=0.0
Q ss_pred cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905 11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN 90 (248)
Q Consensus 11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d 90 (248)
+.....|+|.|.+.... . ..++.++.++..|++....+.|++++++|+.|. |+. + .++.|..++++++
T Consensus 16 ~~~~~~I~LKV~~~g~~--v---~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFd---G~r---I-~~~~TP~~L~MED 83 (360)
T 3ix6_A 16 VKPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDMED 83 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEecCCcE--E---EEEEecCChHHHHHHHHHHHhCCCcceEEEEEC---CeE---C-CCCCChHHcCCCc
Confidence 34556788888863322 3 688999999999999999999999999999986 776 3 5779999999999
Q ss_pred CcEEEEEeC
Q psy13905 91 EMTLFVEGN 99 (248)
Q Consensus 91 G~~IhVvD~ 99 (248)
|.+|+|.-.
T Consensus 84 gD~Idv~~~ 92 (360)
T 3ix6_A 84 NDIIEAHRE 92 (360)
T ss_dssp ---------
T ss_pred cchhhhhhc
Confidence 999999864
No 135
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.48 E-value=0.066 Score=39.63 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=40.8
Q ss_pred EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCc
Q psy13905 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD 71 (248)
Q Consensus 17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~ 71 (248)
+.|.|....+ . -+|++++++..+|.+||....+++++.++|+|++.++.
T Consensus 6 ~~VKV~~~~t---v---airvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~ 54 (83)
T 1oey_A 6 YTLKVHYKYT---V---VMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSN 54 (83)
T ss_dssp EEEEEESSSE---E---EEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCS
T ss_pred EEEEEEEEEE---E---EEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCC
Confidence 5666665522 3 69999999999999999999999999999999985444
No 136
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=93.15 E-value=0.016 Score=53.44 Aligned_cols=76 Identities=8% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE 91 (248)
Q Consensus 12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG 91 (248)
+....|+|.|...... . ..++.++.++.-|++....+.|+++.++++.|. |+. + .++.|..++++++|
T Consensus 26 ~~~~~i~lkv~~~~~~--~---~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~---G~~---i-~~~~Tp~~l~med~ 93 (389)
T 4da1_A 26 KPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQAPEDLDMEDN 93 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEEEecCCcE--E---EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC---CEE---c-CCCCCHHHcCCCCC
Confidence 4456778888752222 3 689999999999999999999999999999987 776 3 57899999999999
Q ss_pred cEEEEEeC
Q psy13905 92 MTLFVEGN 99 (248)
Q Consensus 92 ~~IhVvD~ 99 (248)
.+|+|.-.
T Consensus 94 d~i~~~~~ 101 (389)
T 4da1_A 94 DIIEAHRE 101 (389)
T ss_dssp --------
T ss_pred CEeeeeec
Confidence 99998853
No 137
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.07 E-value=0.46 Score=37.78 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=45.5
Q ss_pred eEEecCCCCHHHHHHHHHHHH--CCC------CCCeEEEEEeCCCceeeccCC-C-----------CcccCCCCCCCCcE
Q psy13905 34 LKKLKLNNTIGELKQKLELLT--GQM------SSNMTISLYNRNHDLVSHLSD-N-----------SMLLGQYPVENEMT 93 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t--Gip------p~~mrL~l~~~~g~~i~~L~~-d-----------~~~L~~y~i~dG~~ 93 (248)
..++-.-.||.|+|+||-..+ |+| +..|.|.++.+....+. |.+ | -.||+.|++.||++
T Consensus 20 ~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~i-L~D~D~ts~~~~~~krLNTL~HY~V~dgat 98 (127)
T 3h6n_A 20 SVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYI-LRDLDDTSVVEDGRKKLNTLAHYKIPEGAS 98 (127)
T ss_dssp EEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEE-CCSSSTTSCEETTEECCCBTTTTTCCTTCE
T ss_pred eeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceE-eecCCCcceecCceeEeccccccCCCCCCE
Confidence 566667899999999996652 444 46899999754332211 211 1 14899999999999
Q ss_pred EEEEeC
Q psy13905 94 LFVEGN 99 (248)
Q Consensus 94 IhVvD~ 99 (248)
|-++-.
T Consensus 99 v~l~~~ 104 (127)
T 3h6n_A 99 LAMSLI 104 (127)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 998853
No 138
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=92.38 E-value=0.12 Score=37.57 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=38.6
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCC-----CCCeEEEEEeCCCceeeccCCC
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQM-----SSNMTISLYNRNHDLVSHLSDN 79 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGip-----p~~mrL~l~~~~g~~i~~L~~d 79 (248)
.+++++++|..+|..||..+.+.. ....+|.|++.+|..+.-.+++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sdd 55 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDE 55 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHH
Confidence 588999999999999999999986 5778999999889875544333
No 139
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=91.82 E-value=0.73 Score=36.10 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=61.0
Q ss_pred ecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 10 IMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 10 ~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
+-+....++|.|.-+.-.+ . +++|..+.||.+|..-|... |.++..-.|.-..+ .+.+ ...+.+.+|.+.++.
T Consensus 37 ~d~~~~~t~IqIRlPdG~r-l---~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fP-rk~l-~~~d~~~TL~e~gL~ 109 (124)
T 1wj4_A 37 IDVNGPKAQLMLRYPDGKR-E---QITLPEQAKLLALVKHVQSK-GYPNERFELLTNFP-RRKL-SHLDYDITLQEAGLC 109 (124)
T ss_dssp CCCSSCEEEEEEECTTSCE-E---EEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSS-CCEE-TSSCSSSCTTTTTCC
T ss_pred cCCCCCcEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCC-CcCC-ccCCCCCCHHHCCCC
Confidence 4456678899999655432 4 79999999999999999887 87776666653222 2331 114568999999999
Q ss_pred CCcEEEEEe
Q psy13905 90 NEMTLFVEG 98 (248)
Q Consensus 90 dG~~IhVvD 98 (248)
+...|+|..
T Consensus 110 psa~Liv~~ 118 (124)
T 1wj4_A 110 PQETVFVQE 118 (124)
T ss_dssp SSBCCEEEE
T ss_pred CceEEEEEE
Confidence 999998886
No 140
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=91.62 E-value=0.88 Score=34.70 Aligned_cols=82 Identities=7% Similarity=-0.001 Sum_probs=60.1
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
....++|.|.-+.-++ . +++|+.+.||.+|.+-|....|.+...-.|.-..+ .+. ....+.+.+|.+.++.+..
T Consensus 10 ~~~~t~IqIRlpdG~r-l---~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fP-rk~-l~~~d~~~TL~elgL~psa 83 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSS-F---TNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFP-RRE-FTREDYKRRLLDLELAPSA 83 (109)
T ss_dssp CSCCEEEEEECSSSCE-E---EEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSS-CCB-CCTTTTTSBTGGGTCSSEE
T ss_pred CCCcEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCC-CcC-CcccccCCCHHHCCCCCce
Confidence 3457889999654432 4 79999999999999999999887766666553222 222 1122567999999999999
Q ss_pred EEEEEeCC
Q psy13905 93 TLFVEGNY 100 (248)
Q Consensus 93 ~IhVvD~~ 100 (248)
.|+|....
T Consensus 84 ~L~v~~~~ 91 (109)
T 2dzk_A 84 SVVLLPAG 91 (109)
T ss_dssp EEEEECCS
T ss_pred EEEEEECc
Confidence 99999754
No 141
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.52 E-value=0.29 Score=38.37 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=44.6
Q ss_pred eEEecCCCCHHHHHHHHHHHH--CCC------CCCeEEEEEeCCCceeeccCCCC-----------cccCCCCCCCCcEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLT--GQM------SSNMTISLYNRNHDLVSHLSDNS-----------MLLGQYPVENEMTL 94 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t--Gip------p~~mrL~l~~~~g~~i~~L~~d~-----------~~L~~y~i~dG~~I 94 (248)
..++-.-.||.|+|+||-..+ |+| +..+.|.++.+.+..+.--+.|. .||+.|++.+|++|
T Consensus 30 ~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl 109 (117)
T 4e74_A 30 PVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVV 109 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEE
T ss_pred EeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEE
Confidence 566777899999999986552 554 45789999865333211011111 38899999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
-++-
T Consensus 110 ~l~~ 113 (117)
T 4e74_A 110 ALVS 113 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8864
No 142
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.21 E-value=0.49 Score=37.57 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=43.9
Q ss_pred eEEecCCCCHHHHHHHHHHH----HCCC----CCCeEEEEEeCCCcee-eccC------CC----CcccCCCCCCCCcEE
Q psy13905 34 LKKLKLNNTIGELKQKLELL----TGQM----SSNMTISLYNRNHDLV-SHLS------DN----SMLLGQYPVENEMTL 94 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~----tGip----p~~mrL~l~~~~g~~i-~~L~------~d----~~~L~~y~i~dG~~I 94 (248)
..++-.-.||.|+|+||-.. .|+| +.+|.|.++.+.+..+ ...+ .+ -.||..|++.||++|
T Consensus 42 ~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatl 121 (126)
T 3kuz_A 42 SVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTI 121 (126)
T ss_dssp EEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEE
T ss_pred EeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCCEE
Confidence 46666789999999998543 3776 4578888875443221 1110 11 147889999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
-++.
T Consensus 122 al~k 125 (126)
T 3kuz_A 122 KVFK 125 (126)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8763
No 143
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=91.06 E-value=1.1 Score=34.75 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=41.4
Q ss_pred eEEecCCCCHHHHHHHHHHHH--CCC------CCCeEEEEEeCCCceeeccCC-C-----------CcccCCCCCCCCcE
Q psy13905 34 LKKLKLNNTIGELKQKLELLT--GQM------SSNMTISLYNRNHDLVSHLSD-N-----------SMLLGQYPVENEMT 93 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t--Gip------p~~mrL~l~~~~g~~i~~L~~-d-----------~~~L~~y~i~dG~~ 93 (248)
..++-.-.||.|+|+||-..+ |+| +..|.|.++.+.+..+ |.+ | -.||+.|++.||++
T Consensus 27 ~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~i--L~D~D~ts~~~~~wkrLNTL~HY~V~dgat 104 (111)
T 4e71_A 27 PVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQI--LSDLDLTSQREGRWKRVNTLMHYNVRDGAT 104 (111)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEE--CCSSCTTSCC---CCCCCBHHHHTCCTTCE
T ss_pred eeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCcc--ccccCccceecCcceEecchhhcCCCCCCE
Confidence 577778899999999996542 444 4578899864422221 222 1 14888999999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|-++-
T Consensus 105 l~l~~ 109 (111)
T 4e71_A 105 LILSK 109 (111)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98763
No 144
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=90.55 E-value=0.23 Score=39.48 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=31.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN 67 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~ 67 (248)
..|+..++|+.+||..+....|+|+++|||+...
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 4788999999999999999999999999999864
No 145
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=90.33 E-value=0.35 Score=36.82 Aligned_cols=41 Identities=10% Similarity=0.048 Sum_probs=35.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCC-----CCeEEEEEeCCCceee
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMS-----SNMTISLYNRNHDLVS 74 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp-----~~mrL~l~~~~g~~i~ 74 (248)
...++++++..+|..||..+.++++ ...+|.|+|.+|..+.
T Consensus 26 ~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vt 71 (98)
T 1q1o_A 26 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 71 (98)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEE
Confidence 5889999999999999999999763 2369999999988754
No 146
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=87.91 E-value=0.82 Score=41.47 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=49.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHC----CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTG----QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tG----ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
...|+|++||.+.+.+|..... .++++=-|.+.+.+++.-..| .+.++|..|++++|..|+..
T Consensus 16 ~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 16 TMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCceeecc
Confidence 5789999999999999866653 367777999877665554556 56779999999999877744
No 147
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=87.60 E-value=1.8 Score=32.80 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=57.9
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccC-CCCcccCCCCCCCCc
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLS-DNSMLLGQYPVENEM 92 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~-~d~~~L~~y~i~dG~ 92 (248)
...++|.|..+.-++ . .+||..+.||.+|..=|... |..+..-+|.-..+ .+. +. +.+.+|.+.|+.+..
T Consensus 21 ~~~~~IqiRlpdG~r-~---~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fP-rk~---l~~d~~~TL~e~gL~p~a 91 (109)
T 2cr5_A 21 EEVVTVALRCPNGRV-L---RRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFP-RRA---LEVEGGSSLEDIGITVDT 91 (109)
T ss_dssp SSEEEEEEECTTSCE-E---EEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSS-CCB---CCCCSSCBHHHHTCSSCE
T ss_pred CCcEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCC-CcC---CCCCCCCCHHHcCCCCCe
Confidence 568899999665443 4 79999999999999999865 55555556543222 222 33 568999999999999
Q ss_pred EEEEEeCC
Q psy13905 93 TLFVEGNY 100 (248)
Q Consensus 93 ~IhVvD~~ 100 (248)
.|+|....
T Consensus 92 ~L~Ve~~~ 99 (109)
T 2cr5_A 92 VLNVEEKE 99 (109)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998754
No 148
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=86.77 E-value=1.8 Score=32.71 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=58.1
Q ss_pred CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905 14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93 (248)
Q Consensus 14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~ 93 (248)
...|+|.|...... . ..++-.+..+.-|..-.....|+++++.|+.|. |.. + .++.|-.+.++++|.+
T Consensus 19 ~~~IniKV~~~g~e--v---~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfD---G~r---I-~~~~TP~~L~meD~Di 86 (95)
T 2l76_A 19 PRLFPLKIRCRADL--V---RLPLRMSEPLQSVVDHMATHLGVSPSRILLLFG---ETE---L-SPTATPRTLKLGVADI 86 (95)
T ss_dssp CCCEEEEEECSSSE--E---EEEECSSSCTHHHHHHHHHHHTSCGGGEEEEET---TEE---C-CTTSCHHHHTCCSSCE
T ss_pred CCeEEEEEEcCCcE--E---EEEEecCChHHHHHHHHHhhcCCChhhEEEEEC---CcC---C-CCCCCHhHcCCCCCCE
Confidence 34688999853221 2 467788999999999999999999999998875 665 2 5777888889999999
Q ss_pred EEEEe
Q psy13905 94 LFVEG 98 (248)
Q Consensus 94 IhVvD 98 (248)
|-|.-
T Consensus 87 ID~~~ 91 (95)
T 2l76_A 87 IDCVV 91 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98865
No 149
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=81.55 E-value=1.8 Score=34.24 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=50.9
Q ss_pred EEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCC-eEEEEEeCCC-------------------------c-
Q psy13905 19 LYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSN-MTISLYNRNH-------------------------D- 71 (248)
Q Consensus 19 v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~-mrL~l~~~~g-------------------------~- 71 (248)
|.|.-..... - ..+++.+.||.+++.-|-...||++.. =-|....... +
T Consensus 14 LkV~llDg~~-k---tl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 14 LKIRMLDGTV-K---TIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEECTTSCE-E---EEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred EEEEcCCCCE-E---EEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 5566443331 3 688999999999999999999999541 1222111100 0
Q ss_pred ------eeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905 72 ------LVSHLSDNSMLLGQYPVENEMTLFVEGNY 100 (248)
Q Consensus 72 ------~i~~L~~d~~~L~~y~i~dG~~IhVvD~~ 100 (248)
.+.+| +++++|..+||.++.+|.+--..
T Consensus 90 kL~~dd~~~WL-D~srtL~EQGI~e~~tllLRrKf 123 (128)
T 2kc2_A 90 KLHTDDELNWL-DHGRTLREQGVEEHETLLLRRKF 123 (128)
T ss_dssp SCCCSSSEEEE-CSSSCHHHHTCCTTSEEEEEESS
T ss_pred HhcccCCCCcc-cCCCcHHHcCCCCCCEEEEEEEE
Confidence 01334 78899999999999988775543
No 150
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=80.73 E-value=6.8 Score=28.90 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=35.2
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEe
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN 67 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~ 67 (248)
+.++|.+-....- . -+|+|++++..+||.||..+..+ +.+.|.++.
T Consensus 11 ~~~KVK~yy~DDI--i---AIrvP~di~~~~L~dKi~~RLk~--~~~~l~~yk 56 (85)
T 1ip9_A 11 KTTKIKFYYKDDI--F---ALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKL 56 (85)
T ss_dssp CCEEEEECBTTCC--E---EEEECSCCCHHHHHHHHHHHHTS--SCEEEEECC
T ss_pred CceEEEEEecCcE--E---EEECCCCCCHHHHHHHHHHHhcc--cceEEEEec
Confidence 4566666655433 3 69999999999999999999999 466666653
No 151
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=78.27 E-value=9.6 Score=37.64 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=44.5
Q ss_pred eEEecCCCCHHHHHHHHHHH--HCCC------CCCeEEEEEeCCCceeeccCCC-----------CcccCCCCCCCCcEE
Q psy13905 34 LKKLKLNNTIGELKQKLELL--TGQM------SSNMTISLYNRNHDLVSHLSDN-----------SMLLGQYPVENEMTL 94 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~--tGip------p~~mrL~l~~~~g~~i~~L~~d-----------~~~L~~y~i~dG~~I 94 (248)
..++-.-.||.|+|+||-.. -|+| +..+.|..+.+.+..+.--+.| -.||+.|+|.||++|
T Consensus 277 ~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~v 356 (644)
T 3hm6_X 277 PVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATV 356 (644)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEE
T ss_pred eeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCCcEE
Confidence 57777889999999999743 2444 4677888875432221111112 148999999999999
Q ss_pred EEEe
Q psy13905 95 FVEG 98 (248)
Q Consensus 95 hVvD 98 (248)
-++-
T Consensus 357 ~L~p 360 (644)
T 3hm6_X 357 ALVP 360 (644)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8874
No 152
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=77.97 E-value=1.7 Score=41.86 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN 67 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~ 67 (248)
..|+..++|+.+||+++....|+|+++|||++..
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~ 72 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 72 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 4789999999999999999999999999999864
No 153
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=76.64 E-value=14 Score=36.30 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=45.8
Q ss_pred eEEecCCCCHHHHHHHHHHHH--CCC------CCCeEEEEEeCCCceeeccCCCC-----------cccCCCCCCCCcEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLT--GQM------SSNMTISLYNRNHDLVSHLSDNS-----------MLLGQYPVENEMTL 94 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t--Gip------p~~mrL~l~~~~g~~i~~L~~d~-----------~~L~~y~i~dG~~I 94 (248)
..++-.-.||.|+|+||-..+ |+| +.++.|..+.+.+..+.--+.|. .||+.|+|.||++|
T Consensus 250 ~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dga~v 329 (627)
T 3ig3_A 250 PVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDGSLV 329 (627)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEE
T ss_pred eeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCCceE
Confidence 567777899999999997653 443 56788888755322211111111 38999999999999
Q ss_pred EEEeC
Q psy13905 95 FVEGN 99 (248)
Q Consensus 95 hVvD~ 99 (248)
-++-.
T Consensus 330 ~L~p~ 334 (627)
T 3ig3_A 330 ALVPK 334 (627)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98864
No 154
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=76.28 E-value=3 Score=32.52 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=53.7
Q ss_pred cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH-HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL-TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~-tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
-++.+.++|.|.-+.-++ . .++|..+.||.+|.+-|... .|.+...-.|.-..+ .+. +.+++.+|.+.|+.
T Consensus 47 d~~~~~t~IqIRlpdG~r-l---~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fP-rk~---l~d~~~TL~eagL~ 118 (127)
T 1s3s_G 47 NEAEPTTNIQIRLADGGR-L---VQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFP-NKE---LADENQTLKEANLL 118 (127)
T ss_dssp CTTSCCCCEEEEETTTTE-E---EEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTT-TEE---CCSTTCBHHHHTCS
T ss_pred cCCCCcEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCC-CCC---CCCCCCcHHHCCCc
Confidence 345668889999654432 4 79999999999999999886 344444555543211 222 45678999999999
Q ss_pred CCcEEE
Q psy13905 90 NEMTLF 95 (248)
Q Consensus 90 dG~~Ih 95 (248)
+.+.|+
T Consensus 119 psavl~ 124 (127)
T 1s3s_G 119 NAVIVQ 124 (127)
T ss_dssp SCEEEE
T ss_pred CceEEE
Confidence 876654
No 155
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=76.16 E-value=5 Score=29.63 Aligned_cols=52 Identities=12% Similarity=0.202 Sum_probs=40.8
Q ss_pred EEEEEeCCCCcccccceEEecC----CCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905 18 ELYITNSKDKHESCLNLKKLKL----NNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 18 ~v~ItS~~~s~~s~~~E~r~~~----~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~ 74 (248)
.|.|.|-... - -|||+. ..+..+|..+++.+..++...-.|.|.|.+|..+.
T Consensus 6 ~l~vKskf~a--E---~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlp 61 (86)
T 1wmh_B 6 IVEVKSKFDA--E---FRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLP 61 (86)
T ss_dssp EEEEEEEETT--E---EEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEE
T ss_pred EEEEEeecCC--e---eeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEee
Confidence 4666665444 2 377764 38999999999999999988999999998898744
No 156
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=74.88 E-value=2.1 Score=33.46 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHH-CCCCCCeEEEEEeCCCceee
Q psy13905 41 NTIGELKQKLELLT-GQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 41 ~TI~eLK~KLe~~t-Gipp~~mrL~l~~~~g~~i~ 74 (248)
.|..+|+.|+..++ ++....-.|.++|.+|..|.
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlIt 91 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVA 91 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEE
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEE
Confidence 49999999999999 78878899999999999744
No 157
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=72.09 E-value=2.1 Score=32.57 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHH-CCCCCCeEEEEEeCCCceee
Q psy13905 41 NTIGELKQKLELLT-GQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 41 ~TI~eLK~KLe~~t-Gipp~~mrL~l~~~~g~~i~ 74 (248)
.|..+|+.++..++ ++....-.|.+.|.+|..|.
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEE
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEE
Confidence 48999999999996 67777889999999999754
No 158
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=71.10 E-value=11 Score=27.99 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=41.5
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~ 74 (248)
..|+|.|+.....+ + |-.......|+.+|...+...+|++ ..+|.|.|.+|..++
T Consensus 5 ~~v~lkV~f~ge~~-r--f~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~ 59 (87)
T 2bkf_A 5 PQVTLNVTFKNEIQ-S--FLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVS 59 (87)
T ss_dssp CCEEEEEEETTEEE-E--EEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEE
T ss_pred ceEEEEEEEcCCee-E--EEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEE
Confidence 46778888665441 1 1233455899999999999999997 779999998888754
No 159
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=66.10 E-value=7.8 Score=28.85 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=55.5
Q ss_pred CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM 92 (248)
Q Consensus 13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~ 92 (248)
+.++ +|.|-....++ . ..++.|+.|+.|+=+.--.++|+++++=.|.+. ++. + |-+.++..-|+..|+
T Consensus 7 ~~~m-~v~Vl~~n~rr-~---~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~---~k~---l-DLSlpfRlsgLpnnA 74 (90)
T 2al3_A 7 GGGS-AVSVLAPNGRR-H---TVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ---RTV---L-DLSLQWRFANLPNNA 74 (90)
T ss_dssp ---C-CEEEECTTSCE-E---EECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET---TEE---E-SSSCBHHHHCCCSSC
T ss_pred CCcc-EEEEEcCCCcE-E---EEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC---CEe---c-cccceeEecCCCCCC
Confidence 3343 56666544432 3 688999999999999999999999987777754 344 2 456788889999999
Q ss_pred EEEEEeCC
Q psy13905 93 TLFVEGNY 100 (248)
Q Consensus 93 ~IhVvD~~ 100 (248)
.+.++...
T Consensus 75 kLELv~~s 82 (90)
T 2al3_A 75 KLEMVPVS 82 (90)
T ss_dssp EEEEECSS
T ss_pred EEEEEEcc
Confidence 99988643
No 160
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.37 E-value=16 Score=27.13 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=57.4
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I 94 (248)
.+|+|.|...-++. + -.|++|..++.+|=--|-...-..|+.--|. ++..-. ..| +=+.+|.+||++ ++
T Consensus 9 ~TvRLvVNy~~tQK-t---VvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll-~d~~~~--e~L-dLskSLndlgir---EL 77 (91)
T 2daj_A 9 KTVRVVINFKKTQK-T---IVRVSPHASLQELAPIICSKCEFDPLHTLLL-KDYQSQ--EPL-DLTKSLNDLGLR---EL 77 (91)
T ss_dssp SCEEEEEEETTTEE-E---EEEECSSSCTTTHHHHHHHHTTCCTTSEEEE-SCSSCC--CBC-CTTSCHHHHTCS---EE
T ss_pred cEEEEEEeecCcce-e---EEEeCCCCcHHHHHHHHhhcccCChhhEEEe-cCCCCC--ccc-chhcchhhhhhh---hh
Confidence 57899999777664 4 6999999999999999999999999887654 322111 223 567899999999 58
Q ss_pred EEEeCC
Q psy13905 95 FVEGNY 100 (248)
Q Consensus 95 hVvD~~ 100 (248)
.+.|+.
T Consensus 78 ya~d~~ 83 (91)
T 2daj_A 78 YAMDVN 83 (91)
T ss_dssp EEEECC
T ss_pred heeccc
Confidence 888864
No 161
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=63.89 E-value=23 Score=27.89 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=43.0
Q ss_pred eEEecC----CCCHHHHHHHHHHHHCCCCCCeEEEEEe-CCCceeec--cC-CCCcccCCCCCCCCcEEEEEeCC
Q psy13905 34 LKKLKL----NNTIGELKQKLELLTGQMSSNMTISLYN-RNHDLVSH--LS-DNSMLLGQYPVENEMTLFVEGNY 100 (248)
Q Consensus 34 E~r~~~----~~TI~eLK~KLe~~tGipp~~mrL~l~~-~~g~~i~~--L~-~d~~~L~~y~i~dG~~IhVvD~~ 100 (248)
...+++ .+|+++|=++|....|-+- .+.+.+ ++.+.+.. .+ +-.++|.+.|+..|..|.|.|-+
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~---eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ---DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS---SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC---cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 455553 4799999999988899763 233332 22222222 22 23589999999999999999853
No 162
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=61.94 E-value=19 Score=24.65 Aligned_cols=49 Identities=8% Similarity=0.033 Sum_probs=33.4
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++.++...|+.+|.+.| |+++....+.+. |.. +..+. .+++|.+|-++-
T Consensus 17 ~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN---~~~---v~~~~------~L~~gD~V~ii~ 65 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGEL----EIPIETVVVKKN---GQI---VIDEE------EIFDGDIIEVIR 65 (70)
T ss_dssp EEEESSCCBHHHHHHHT----TCCTTTEEEEET---TEE---CCTTS------BCCTTCEEEEEE
T ss_pred eEECCCCCcHHHHHHHh----CCCCCCEEEEEC---CEE---CCCcc------cCCCCCEEEEEe
Confidence 57788889999999987 677665543332 444 11121 788999998875
No 163
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=61.48 E-value=13 Score=28.16 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=41.1
Q ss_pred ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74 (248)
Q Consensus 15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~ 74 (248)
..|+|.|+.....+ . |-..+....|+.+|...+...+|++ .++|.|.|.++..|+
T Consensus 13 ~~v~lkV~f~ge~~-r--F~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 13 PQVTLNVTFKNEIQ-S--FLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVS 67 (101)
T ss_dssp SCEEEEEEETTEEE-E--EEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEEC
T ss_pred ccEEEEEEEcCCee-E--EEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEE
Confidence 46788888665431 1 1233455999999999999999997 678889988887744
No 164
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=56.73 E-value=15 Score=32.63 Aligned_cols=33 Identities=18% Similarity=0.006 Sum_probs=30.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLY 66 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~ 66 (248)
..-..+..|+.+|+++++..||+++++|.|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~ 357 (396)
T 4eut_A 325 KIYIHSYNTATIFHELVYKQTKIISSNQELIYE 357 (396)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCSTTEEEESS
T ss_pred EEEcCchhHHHHHHHHHHHhcCCChhhhHHHhc
Confidence 467888999999999999999999999999875
No 165
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=54.90 E-value=15 Score=24.76 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=34.7
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++.++...|+.+|.+.| ++++....+.+. |..+. .....+..+++|.+|.++-
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN---~~~v~-----~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAIN---QQIVP-----REQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEET---TEEEC-----HHHHTTCCCCTTEEECEEE
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEEC---CEECC-----chhcCCcCCCCCCEEEEEe
Confidence 46677889999999988 666655544432 44321 1123356788999888764
No 166
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=52.83 E-value=19 Score=26.25 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=35.2
Q ss_pred eEEecCC-CCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLN-NTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~-~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++.++.. .||.+|.+.| |+++....+.+. |..+ +.....++.+++|.+|-++-
T Consensus 29 ~~el~~~~~Tv~dLL~~L----~~~~~~vaVavN---g~iV-----~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASY----QLENKIVIVERN---KEII-----GKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EECCSSSCCBHHHHHHHT----TCTTSCCEEEET---TEEE-----CGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCCCCCcHHHHHHHh----CCCCCCEEEEEC---CEEC-----ChhhcCCcCCCCCCEEEEEc
Confidence 4567777 9999999887 677665544433 4442 12234456789999998874
No 167
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=47.83 E-value=12 Score=37.08 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=31.5
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLY 66 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~ 66 (248)
+..+.+..|+..|+.+|+..|||++++|.|.+.
T Consensus 325 ~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~ 357 (676)
T 3qa8_A 325 TYPVTENENLQNLKSWLQQDTGIPEEEQELLQA 357 (676)
T ss_dssp EEECCTTCCHHHHHHHHHTTSCCCSTTCEEESS
T ss_pred eeecCCCccHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 789999999999999999999999999999986
No 168
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=46.25 E-value=30 Score=23.08 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=33.8
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
++.+ ...|+.+|.+.| |+++....+.+. |..+. ...-.+..+++|.+|.++-
T Consensus 8 ~~~~-~~~tv~~ll~~l----~~~~~~v~vavN---~~~v~-----~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEEM----GVELKGVAVLLN---EEAFL-----GLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EECC-TTCCHHHHHHHH----TBCGGGEEEEET---TEEEE-----GGGCCCCCCCTTCEEEEEE
T ss_pred EEEc-CCCcHHHHHHHc----CCCCCcEEEEEC---CEECC-----ccccCCcCCCCCCEEEEEe
Confidence 4556 789999999888 566655544432 44422 1223456789999998874
No 169
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=44.65 E-value=23 Score=37.37 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=44.0
Q ss_pred cCCCccCCEEEE-cCC---C-CceeEEEEecccCCCCceEEEEEEcCCC-CCCceeEcCeEeeecCCCceeeEcCCCC
Q psy13905 160 LKDIEVGKRCKI-NDS---D-VRFGTVMFVGETKFSSGVWVGVKLDEPF-GKNNGTVKDVKYFECEENYGMFVKPGRL 231 (248)
Q Consensus 160 ~~~~~vG~Rv~v-~~~---~-~~~G~vryvG~~~~~~g~wvGVelDep~-GkndGs~~G~rYF~c~~~~G~Fv~~~~v 231 (248)
...+.+||||.. ... | ..+|||-=+-. ......+.|-||++. |.+ |++| .|++.+|.=|+++.|
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl~~kGTVVGi~~--~~~~~~ldVvFD~~F~~G~--tlgg----rcs~~RG~~v~~s~l 1132 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTS--IGKNVSIQVLFDNEIIAGN--NFGG----RLQTRRGLGLDSSFL 1132 (1155)
T ss_pred CCcccCCCeEEEecCCCCCccccceEEEEEec--CCCceEEEEEeccCccCCC--cccc----cccccccccccHHHe
Confidence 445899999865 321 2 56888864433 334688999999996 433 2333 499999999888765
No 170
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=37.67 E-value=68 Score=23.48 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=31.6
Q ss_pred eEEecC-CCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCc
Q psy13905 34 LKKLKL-NNTIGELKQKLELLTGQMSSNMTISLYNRNHD 71 (248)
Q Consensus 34 E~r~~~-~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~ 71 (248)
...|+- +++|.+||..|-...+.-..+-.|.+++++..
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~ 59 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTK 59 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSC
T ss_pred eEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCC
Confidence 466664 79999999999999999888899999986544
No 171
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=36.03 E-value=84 Score=29.96 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCCceEEEEEEe--CCCC---cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCC-ceeeccCCCCcccCC
Q psy13905 12 DGGGTVELYITN--SKDK---HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNH-DLVSHLSDNSMLLGQ 85 (248)
Q Consensus 12 ~~~~~V~v~ItS--~~~s---~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g-~~i~~L~~d~~~L~~ 85 (248)
+....|-|++.. .... ..+ ..-++.+.+|++|-..|-.+.|+|++.- |.|+..-. ..+..|++...++..
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G---~~~v~~~~kv~~l~~~i~~~~g~p~dt~-l~lyEEi~~~~ie~l~~~~~t~~~ 201 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCG---HIYTPISCKIRDLLPVMCDRAGFIQDTS-LILYEEVKPNLTERIQDYDVSLDK 201 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEE---EEEEETTCBGGGTHHHHHHHHTCCTTCC-EEEEEEEETTEEEECCCSSSBHHH
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEE---EEEECCCCCHHHHHHHHHHHcCCCCCCc-eEEEEecCCCceeEcccccccHHH
Confidence 344567888883 2222 222 4779999999999999999999999874 44442111 135667657789999
Q ss_pred C--CCCCCcEEEEEeC
Q psy13905 86 Y--PVENEMTLFVEGN 99 (248)
Q Consensus 86 y--~i~dG~~IhVvD~ 99 (248)
. .+.+|..|-+.-.
T Consensus 202 ~~~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 202 ALDELMDGDIIVFQKD 217 (530)
T ss_dssp HSTTCCTTEEEEEEEC
T ss_pred HHhcccCCCEEEEEec
Confidence 9 9999998877753
No 172
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=32.67 E-value=1.5e+02 Score=25.79 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=45.6
Q ss_pred hcCCCccCCEEEEcC---CCCceeEEEEecccCCC--CceEEEEEEcCCCCC-CceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905 159 ILKDIEVGKRCKIND---SDVRFGTVMFVGETKFS--SGVWVGVKLDEPFGK-NNGTVKDVKYFECEENYGMFVKPGRLT 232 (248)
Q Consensus 159 ~~~~~~vG~Rv~v~~---~~~~~G~vryvG~~~~~--~g~wvGVelDep~Gk-ndGs~~G~rYF~c~~~~G~Fv~~~~v~ 232 (248)
....+++|+.|.|.- .....|+|.++++.... ..+-+=+.++.|.+. -.|.+- .-.|......++.||.+.|.
T Consensus 218 ~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~-~v~i~~~~~~~l~vP~~Av~ 296 (359)
T 3lnn_A 218 DLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFA-QATFLSQPHEGIVVPMSAIV 296 (359)
T ss_dssp GSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEE-EEEEECCCEEEEEEEGGGCE
T ss_pred HHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEE-EEEEecCCCCceEeCHHHhe
Confidence 345688999999862 23678999999997553 235566778877543 344442 22334445556666665553
No 173
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=32.04 E-value=8.8 Score=28.37 Aligned_cols=39 Identities=28% Similarity=0.578 Sum_probs=27.2
Q ss_pred cCCCccCCEEEEcCCCCceeEE--EEecccCCCCceEEEEEEcCCC
Q psy13905 160 LKDIEVGKRCKINDSDVRFGTV--MFVGETKFSSGVWVGVKLDEPF 203 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~~~~G~v--ryvG~~~~~~g~wvGVelDep~ 203 (248)
.+...+|..|.|... .+-|+| ||.| ..|+.+|+-+|+|-
T Consensus 35 gapvrig~~v~iv~~-s~~~si~~rflg----~sgivv~lvfddp~ 75 (106)
T 2kss_A 35 GAPVRIGAKVKVVPH-SEDGTISQRFLG----QTGIVVGLVFDDPA 75 (106)
T ss_dssp SCSSCTTCEEECCSS-CSSSCCCTTTTT----CEEEEEECCCCCCT
T ss_pred CCceEecceEEEecc-ccCCccChhhcC----ccceEEEEEeCCch
Confidence 345788999988754 345554 3333 45899999999995
No 174
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=29.64 E-value=54 Score=22.73 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=36.1
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
.+.+ ...||.+|-+.| |+++...-+.+. |..+ +.....++.+++|.+|-|+-
T Consensus 9 ~~e~-~~~Tl~~LL~~l----~~~~~~vAV~vN---g~iV-----pr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 9 QREV-QSASVAALMTEL----DCTGGHFAVALN---YDVV-----PRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EECC-CCSBHHHHHHHT----TCCSSSCEEEES---SSEE-----CHHHHTTCBCCTTCEEEEEC
T ss_pred EEEc-CCCcHHHHHHHc----CCCCCcEEEEEC---CEEC-----ChHHcCcccCCCCCEEEEEc
Confidence 3556 779999998755 788877765554 5542 22345567889999998875
No 175
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=29.35 E-value=1.4e+02 Score=21.38 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=32.4
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCc----eeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD----LVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~----~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..++...||.+|.+.|..... .-...| + +.+|. ....+++.... .++.+++|.+|.++-
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p--~l~~~l-~-~~~g~~~~~v~v~VNg~~v~-~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHE--KFKEEV-F-GEGYDEDADVNIAVNGRYVS-WDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCG--GGGGSC-B-CSSSCTTSSBEEEETTBCCC-TTCBCCTTCEEEEES
T ss_pred EEECCCCCCHHHHHHHHHhHCh--hHHHHh-h-ccccccCCcEEEEECCEECC-CCCCCCCCCEEEEEC
Confidence 4667788999999999977631 000010 0 11111 00111111111 267899999998874
No 176
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=28.21 E-value=1.3e+02 Score=22.17 Aligned_cols=70 Identities=6% Similarity=-0.032 Sum_probs=48.6
Q ss_pred ceEEEEEEeCCCC--cccccceEEecCCCCHHHHHHHHHH---HHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905 15 GTVELYITNSKDK--HESCLNLKKLKLNNTIGELKQKLEL---LTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE 89 (248)
Q Consensus 15 ~~V~v~ItS~~~s--~~s~~~E~r~~~~~TI~eLK~KLe~---~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~ 89 (248)
..++|.|..+... +.. ...++.+.||.++=+.+-. ...|..+...+-++ |+.+ . .++.++
T Consensus 11 ~~~~v~v~ya~p~rq~~~---~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vn---g~~v---~------~d~~L~ 75 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLK---SFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIF---SRPI---K------LTDVLK 75 (97)
T ss_dssp CEEEEEEEEEETTEEEEE---EEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEE---ECSC---C------TTCBCC
T ss_pred ceEEEEEEEeCCCCCEEE---EEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEc---CEEC---C------CCccCC
Confidence 3677888854433 222 6889999999999888754 34566666777777 5541 1 566689
Q ss_pred CCcEEEEEeC
Q psy13905 90 NEMTLFVEGN 99 (248)
Q Consensus 90 dG~~IhVvD~ 99 (248)
+|.+|-|.-.
T Consensus 76 dGDRVEIyrp 85 (97)
T 2hj1_A 76 EGDRIEIYRP 85 (97)
T ss_dssp TTCEEEECCC
T ss_pred CCCEEEEEec
Confidence 9999988753
No 177
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=27.78 E-value=66 Score=25.06 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=39.7
Q ss_pred hcCCCccCCEEEEcC---CCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCC--ceeeEcCCCCcc
Q psy13905 159 ILKDIEVGKRCKIND---SDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN--YGMFVKPGRLTI 233 (248)
Q Consensus 159 ~~~~~~vG~Rv~v~~---~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~--~G~Fv~~~~v~~ 233 (248)
....|++||||.... .....-++.|+..-+.....++=|+.+. |+.==.-..+.+|....+ ...++...+++.
T Consensus 17 ~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~--g~~L~lTp~H~i~v~~~~~~~~~~v~A~~l~~ 94 (145)
T 1at0_A 17 PLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDG--GAVLTVTPAHLVSVWQPESQKLTFVFADRIEE 94 (145)
T ss_dssp EGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETT--SCEEEECTTCEEEEEETTTTEEEEEEGGGCCT
T ss_pred EHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECC--CCEEEEeCCCEEEEecCCCCcEEEEEHHHCcC
Confidence 345689999998753 1133455666644443446777777642 110000113445533322 235566667777
Q ss_pred CC
Q psy13905 234 GD 235 (248)
Q Consensus 234 g~ 235 (248)
||
T Consensus 95 GD 96 (145)
T 1at0_A 95 KN 96 (145)
T ss_dssp TC
T ss_pred CC
Confidence 76
No 178
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=27.28 E-value=74 Score=24.25 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=26.8
Q ss_pred cCCCccCCEEEEc----CCC---CceeEEEEecccCC----CCceEEEEEEcC
Q psy13905 160 LKDIEVGKRCKIN----DSD---VRFGTVMFVGETKF----SSGVWVGVKLDE 201 (248)
Q Consensus 160 ~~~~~vG~Rv~v~----~~~---~~~G~vryvG~~~~----~~g~wvGVelDe 201 (248)
...+.+|+.|.+. +.+ ...|.|.|+-+... .+| +||+|.+
T Consensus 39 ~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~~~~~~p~G--~GVqF~~ 89 (117)
T 3cnr_A 39 PKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAG--IGVQFPD 89 (117)
T ss_dssp CSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCE--EEEECCS
T ss_pred CCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCCCCCCCCCc--eEEEEec
Confidence 4568999999886 222 46799999954421 245 8999854
No 179
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=25.77 E-value=32 Score=25.72 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=40.1
Q ss_pred eEEecCCCCHHHHHHHHHHHH--CCCCCCeEEEEE-eCCCce-e----eccC-----CCCcccCCCCCCCCcEEEEEeCC
Q psy13905 34 LKKLKLNNTIGELKQKLELLT--GQMSSNMTISLY-NRNHDL-V----SHLS-----DNSMLLGQYPVENEMTLFVEGNY 100 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t--Gipp~~mrL~l~-~~~g~~-i----~~L~-----~d~~~L~~y~i~dG~~IhVvD~~ 100 (248)
...+++++|+.+|=+.|...- -..... |... ++.++. + -.|. +=+++|...|+.+|.+|+|.|..
T Consensus 8 ~l~v~~~~TL~~lid~L~~~p~~qlk~PS--ltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~ 85 (98)
T 1y8x_B 8 NIQFSPSAKLQEVLDYLTNSASLQMKSPA--ITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT 85 (98)
T ss_dssp CEECCTTCBHHHHHHHHHHCTTCCCSSCE--EEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTT
T ss_pred EEEECCchhHHHHHHHHHhChHhhccCCe--eeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCC
Confidence 588999999999988887731 111111 2111 111121 1 0111 11367899999999999999976
Q ss_pred C
Q psy13905 101 L 101 (248)
Q Consensus 101 l 101 (248)
+
T Consensus 86 ~ 86 (98)
T 1y8x_B 86 T 86 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 180
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=25.39 E-value=1.5e+02 Score=20.55 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=16.9
Q ss_pred eEEecCCCCHHHHHHHHHHHH
Q psy13905 34 LKKLKLNNTIGELKQKLELLT 54 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~t 54 (248)
+..++...||.+|.+.|....
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~ 41 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAH 41 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHC
T ss_pred EEECCCCCcHHHHHHHHHHHC
Confidence 456667899999999998764
No 181
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.56 E-value=64 Score=21.47 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=16.3
Q ss_pred cCCCccCCEEEEcCCC--CceeEEEE
Q psy13905 160 LKDIEVGKRCKINDSD--VRFGTVMF 183 (248)
Q Consensus 160 ~~~~~vG~Rv~v~~~~--~~~G~vry 183 (248)
...+.+|+.|+|..+| ...|+|.-
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~e 30 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILS 30 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECC
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEE
Confidence 3468999999998653 45555543
No 182
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=23.48 E-value=1.7e+02 Score=19.62 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=32.1
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCC--CCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMS--SNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp--~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..+ ...|+.+|.+.|...-+... ....+.+. |..+. -.+..+++|.+|.++-
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN---~~~v~--------~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALN---DHLID--------NLNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEES---SSEEC--------CTTCCCCTTCEEEEEC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEEC---CEEcC--------CCCcCCCCCCEEEEEC
Confidence 4566 67899999999986433221 22222222 33321 1356799999998874
No 183
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=22.98 E-value=20 Score=24.96 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=29.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE 97 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv 97 (248)
++.++...||.+|.+.| |+++....+.+. |+.+ . . ++.+++|.+|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavN---g~~v-~--~------~~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVN---GKVV-L--E------DDEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEET---TEEE-C--S------SSCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEEC---CEEC-C--C------CCCcCCCCEEEEE
Confidence 45667889999998877 466655544433 4431 1 1 2567777766554
No 184
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.63 E-value=1.5e+02 Score=25.55 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=40.0
Q ss_pred cCCCccCCEEEEc--CC--CCceeEEEEecccCCC-Cc---eEEEEEEcCCCCC-CceeEcCeEeeecC-CCceeeEcCC
Q psy13905 160 LKDIEVGKRCKIN--DS--DVRFGTVMFVGETKFS-SG---VWVGVKLDEPFGK-NNGTVKDVKYFECE-ENYGMFVKPG 229 (248)
Q Consensus 160 ~~~~~vG~Rv~v~--~~--~~~~G~vryvG~~~~~-~g---~wvGVelDep~Gk-ndGs~~G~rYF~c~-~~~G~Fv~~~ 229 (248)
...+++|+.|.+. +. ..+.|+|.+|++.... .+ +.+=++++.|.+. -.|.+--. .|... ...++.||.+
T Consensus 204 ~~~v~~G~~v~v~~~~~~~~~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~~~l~~G~~~~v-~i~~~~~~~~l~vP~~ 282 (341)
T 3fpp_A 204 VIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQV-HIQLTDVKNVLTIPLS 282 (341)
T ss_dssp STTCCTTCCCEECCSSSSSSCBCCCEEEECSSCCBSSSCBCCEEEEEEECSSSCCCTTCEEEE-EEESCCCCSSCC----
T ss_pred HhhCCCCCEEEEEEecCCCCEEEEEEEEEecCccccCceEEEEEEEEeCCCccccCCCCEEEE-EEEEccCCCcEEcchH
Confidence 4567899998886 21 2578999999997553 22 4667788877653 34554222 23333 3445666666
Q ss_pred CC
Q psy13905 230 RL 231 (248)
Q Consensus 230 ~v 231 (248)
.|
T Consensus 283 Av 284 (341)
T 3fpp_A 283 AL 284 (341)
T ss_dssp --
T ss_pred Hh
Confidence 65
No 185
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=20.33 E-value=2.1e+02 Score=19.51 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=33.3
Q ss_pred eEEecCCCCHHHHHHHHHHHHC------C-----CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905 34 LKKLKLNNTIGELKQKLELLTG------Q-----MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG 98 (248)
Q Consensus 34 E~r~~~~~TI~eLK~KLe~~tG------i-----pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD 98 (248)
+..++...||.+|.+.|..... + ......+.+. |..+..+. -.++.+++|.+|.++-
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN---~~~v~~~~-----~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVN---GNNITSMK-----GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEES---SSBGGGTC-----SSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEEC---CEEccccC-----CCCcCCCCCCEEEEeC
Confidence 5677777999999999977631 0 0122222222 33321111 1355689999998874
Done!