RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13905
(248 letters)
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 131 bits (331), Expect = 1e-38
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 157 ENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYF 216
+ +++++G R + + + G V F+GET F+ G W GV+LDEP GKN+G V +YF
Sbjct: 33 KKGERELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 90
Query: 217 ECEENYGMFVKPGRLTIGDFPVLDP 241
+C+ YG+F ++T FP P
Sbjct: 91 QCQPKYGLFAPVHKVTKIGFPSTTP 115
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 127 bits (322), Expect = 3e-38
Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 155 LEENILKDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKD 212
L E K+I VG RC++ R G V +VG TKF GVWVGVK DEP GKN+G+V
Sbjct: 4 LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAG 63
Query: 213 VKYFECEENYGMFVKPGRLTIGDFPVLDPFDEL 245
V+YF+C+ YG FV+P + +GDFP L DE+
Sbjct: 64 VRYFDCDPKYGGFVRPVDVKVGDFPELS-IDEI 95
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 126 bits (319), Expect = 9e-38
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
++++G R + + + G V F+GET F+ G W GV+LDEP GKN+G V +YF+C+
Sbjct: 1 ELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPK 58
Query: 222 YGMFVKPGRLTIGDFPVLDP 241
YG+F ++T FP P
Sbjct: 59 YGLFAPVHKVTKIGFPSTTP 78
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 124 bits (313), Expect = 3e-36
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
+E + D VG+R +N + + G + F+GET+F+ G W G+ LDEP GKN+G+V V+Y
Sbjct: 58 QEEFVDDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRY 115
Query: 216 FECEENYGMFVKPGRLTIGDFP 237
F+CE G+F +P +LT
Sbjct: 116 FQCEPLKGIFTRPSKLTRKVSG 137
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 121 bits (306), Expect = 8e-36
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+ +G R + + + G V +VGET F+ G W GV+LDEP GKN+G V +YF+C
Sbjct: 6 SGLRLGDRVLVGGT--KTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 221 NYGMFVKPGRLT-IGDFP 237
+G+F ++ IG P
Sbjct: 64 KFGLFAPIHKVIRIGSGP 81
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 121 bits (306), Expect = 9e-36
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
++ L D VG+R +N + G V ++GET+F+ G W GV LD+P GKN+G V V+Y
Sbjct: 12 GDDFLGDFVVGERVWVNGV--KPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRY 69
Query: 216 FECEENYGMFVKPGRLTIGDFP 237
FEC G+F +P +LT
Sbjct: 70 FECPALQGIFTRPSKLTRQPSG 91
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 121 bits (305), Expect = 1e-35
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 151 KDKCLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTV 210
D + + + + G+ + + G V +VG F G WVGV+LD P GKN+G++
Sbjct: 12 SDSEEADEVPEWLREGEFVTVGAH--KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSI 69
Query: 211 KDVKYFECEENYGMFVKPGRLTIGDFP 237
+YF C YG+ V+P R+
Sbjct: 70 GGKQYFRCNPGYGLLVRPSRVRRATSG 96
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.34.10.1
Length = 102
Score = 121 bits (304), Expect = 2e-35
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 155 LEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVK 214
L++ EVG + + + G V F G+T F+ G W G++LD+P GK++G+V V+
Sbjct: 18 LQQREGAKAEVGDQVLVAGQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVR 75
Query: 215 YFECEENYGMFVKPGRLT-IGDFP 237
YF C +G+F R+ IG P
Sbjct: 76 YFTCAPRHGVFAPASRIQRIGSGP 99
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 121 bits (305), Expect = 2e-35
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
L D +G R I +V+ G + F GET F+ G W GV+LD+P G NNGT + YFEC+
Sbjct: 29 LFDFHIGDRVLI--GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK 86
Query: 220 ENYGMFVKPGRLTIGDFPVLDPFDELDE 247
E +G+F P +++ D D ++
Sbjct: 87 EKHGIFAPPQKISHIPENFDDYVDINED 114
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 120 bits (302), Expect = 6e-35
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
E + + VG R ++ GTV +VG T F++G WVGV LDE GKN+GTV+ KY
Sbjct: 27 AEASARPLRVGSRVEVIGKG-HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKY 85
Query: 216 FECEENYGMFVKPGRLTIGD 235
F C+E +G+FV+ ++ + +
Sbjct: 86 FTCDEGHGIFVRQSQIQVFE 105
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 119 bits (300), Expect = 6e-35
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
E + + VG R ++ GTV +VG T F++G WVGV LDE GKN+GTV+ KY
Sbjct: 6 AEASARPLRVGSRVEVIGKG-HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKY 64
Query: 216 FECEENYGMFVKPGRLTIGDFP 237
F C+E +G+FV+ ++ + +
Sbjct: 65 FTCDEGHGIFVRQSQIQVFEDG 86
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 120 bits (301), Expect = 6e-35
Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 131 MKQKEERLRREALLKENNEEKDKCLEENILKDIEVGKRCKIN--DSDVRFGTVMFVGETK 188
+E R ++EA + E E+ I VG RC++ D +R GTVM+VG T
Sbjct: 6 SGNEELRAQQEAEAAQRLSE-----EKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD 60
Query: 189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
F G WVGV+ DEP GKN+G+V +YFEC+ YG FVKP +T+GD
Sbjct: 61 FKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 118 bits (298), Expect = 1e-34
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
D VG+R +N + + G + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE
Sbjct: 2 DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 222 YGMFVKPGRLTIGDFPVLDP 241
G+F +P +LT +
Sbjct: 60 KGIFTRPSKLTRKVQAEDEA 79
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 117 bits (296), Expect = 3e-34
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
++ +G+R + R GT+ F G T F+ G W G++L++P GKN+G+V V+YF C
Sbjct: 9 GELRLGERVLVVGQ--RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP 66
Query: 221 NYGMFVKPGRLTIGD 235
YG+F P R+
Sbjct: 67 RYGIFAPPSRVQRVT 81
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 117 bits (294), Expect = 7e-34
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+++G R I + GT+ F G T+F+SG W G++LDEP GKNNG+V V+YF+C
Sbjct: 23 LGLKLGDRVVIAGQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80
Query: 221 NYGMFVKPGRLT-IGDFP 237
YG+F +++ + D
Sbjct: 81 KYGIFAPLSKISKLKDSG 98
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 115 bits (289), Expect = 2e-33
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
+ G + + S+ TV +VG T F+SG+W+G++L GKN+G V D +YF C+ N
Sbjct: 12 KLHEGSQVLLTSSN-EMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPN 70
Query: 222 YGMFVKPGRLTIGDFP 237
YG+ V+P R+T
Sbjct: 71 YGVLVRPSRVTYRGIS 86
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 115 bits (290), Expect = 2e-33
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPF-GKNNGTVKDVKYFECE 219
+EVG ++ ++ +G + ++G+ + V G++L++ G +GT + +YF C
Sbjct: 16 HGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA 75
Query: 220 ENYGMFVKPGRLT-IGDFPVLDP 241
+FVK F L P
Sbjct: 76 LKKALFVKLKSCRPDSRFASLQP 98
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 114 bits (288), Expect = 4e-33
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+ +G R ++ + GT+ F G T+F+SG WVGV+LDEP GKN+G+V V+YF C
Sbjct: 15 LGLRLGDRVLLDGQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP 72
Query: 221 NYGMFVKPGRLTIGD 235
G+F +++
Sbjct: 73 KQGLFASVSKISKAV 87
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 112 bits (283), Expect = 1e-32
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
D VG+R +N + + G + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE
Sbjct: 2 DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 222 YGMFVKPGRLT 232
G+F +P +LT
Sbjct: 60 KGIFTRPSKLT 70
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 95
Score = 101 bits (252), Expect = 1e-27
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 161 KDIEVGKRCKI---NDSDVRFGTVMFVG---ETKFSSGVWVGVKLDEPF---GKNNGTVK 211
I+VG K+ + + G V F G + SG++ GV+L E G +G +
Sbjct: 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65
Query: 212 DVKYFECEENYGMFVKPGRLTIGDFP 237
+ F+C+E+ G+FV +L + +
Sbjct: 66 GKQLFQCDEDCGVFVALDKLELIESG 91
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton,
microtubule, CESG, structural genomics, protein
structure initiative, PSI; NMR {Caenorhabditis elegans}
SCOP: d.15.1.1
Length = 122
Score = 69.9 bits (171), Expect = 2e-15
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
+L IT + KK ++ +LK+KLEL+ G +M I L++ + L
Sbjct: 5 EVYDLEITTNATDFPM---EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKG 61
Query: 75 HLSDNSMLLGQYPVENEMTLFV-----EGNYLTDGLESSETKYVLPEEKYKEHKENLKNF 129
L+D + L V + + D ES KY + ++ Y + ++++ +
Sbjct: 62 ELTDGAKSLKDLGVRDGYRIHAVDVTGGNEDFKD--ESMVEKYEMSDDTYGKRTDSVRAW 119
Query: 130 MMK 132
K
Sbjct: 120 KKK 122
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution
PSI-2, structural genomics, protein structure
initiative; NMR {Arabidopsis thaliana}
Length = 97
Score = 65.7 bits (160), Expect = 3e-14
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
+V L+IT++ K S + ++ +K+KL G ++M + LY+ + V+
Sbjct: 13 DSVHLHITHANLK--SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVA 70
Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
LSD+S LG + + L +
Sbjct: 71 VLSDDSRPLGFFSPFDGFRLHI 92
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B,
tubulin folding cofactor B, microtubule, ubiquitin-like
fold, structural genomics; NMR {Mus musculus} SCOP:
d.15.1.1
Length = 95
Score = 64.9 bits (158), Expect = 5e-14
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
V ++I++S + S K+ + TI E K KLEL+ G +S M + LY + S
Sbjct: 6 SGVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYS 62
Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
L LLG YPV++ + V
Sbjct: 63 KLDQEDALLGSYPVDDGCRIHV 84
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 92
Score = 61.3 bits (148), Expect = 1e-12
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 160 LKDIEVGKRCKINDSD-VRFGTVMFVGE--TKFSSGVWVGVKLDEPFGKNNGTVKDVKYF 216
+E+ R + + + GTV+F K S G +VGV +D P G +G V+
Sbjct: 7 GPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLC 66
Query: 217 ECEE-NYGMFVKPGRL 231
+ + +
Sbjct: 67 SFACVESTILLHINDI 82
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics,
PSI-2, protein structure initiative; NMR {Drosophila
melanogaster}
Length = 95
Score = 59.5 bits (144), Expect = 5e-12
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
+++ ++NS + + KL + T+ +LK KLE+LTG + M + ++ + VS
Sbjct: 14 DFIKVNVSNSHNDAVA--FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGD-TCVS 70
Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
+ +N LG Y + + L V
Sbjct: 71 TMDNNDAQLGYYANSDGLRLHV 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 80/223 (35%)
Query: 60 NMTISLYNRNHDLV--------SHLSDN---SML--LGQYPVENEMTLFVEG-------- 98
M + LY +H D S+L + P +T+ G
Sbjct: 1630 GMGMDLYK-TSKAAQDVWNRADNHFKDTYGFSILDIVINNP--VNLTIHFGGEKGKRIRE 1686
Query: 99 NYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEERLRR-E----ALLKENNEEKDK 153
NY E+ + E+ +KE E+ ++ + ++ L + AL
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT--------- 1737
Query: 154 CLEENILKDIEVGKRCKINDSDVRFGTVMF----VGETKFS-----SGVWVGVKLDEPFG 204
+E+ +D++ + I F +GE ++ + V + ++
Sbjct: 1738 LMEKAAFEDLK--SKGLIPADAT------FAGHSLGE--YAALASLADV---MSIES--- 1781
Query: 205 KNNGTVKDVKY------FECEE------NYGMF-VKPGRLTIG 234
V+ V Y NYGM + PGR+
Sbjct: 1782 ----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.009
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 38/138 (27%)
Query: 82 LLGQYPVENEMTLFVEG----NY--LTDGLESSETKYVLPEEKYKEHKENLKN------- 128
L E + FVE NY L +++ + + + Y E ++ L N
Sbjct: 70 TLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 129 -FMMKQKEERLRREALLKENNEEKDKCLEENILKDIEV------GKRCKINDSDVRFGTV 181
+ + + R+ALL+ K++ + GK D V
Sbjct: 129 YNVSRLQPYLKLRQALLELRPA-----------KNVLIDGVLGSGKTWVALDV-CLSYKV 176
Query: 182 MFVGETKFSSGV-WVGVK 198
+ K + W+ +K
Sbjct: 177 ----QCKMDFKIFWLNLK 190
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.051
Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 25 KDKHESCLNLKKLK--LNNTIGELKQKLELLTGQMSS------NMTISLYNRNHDLVSHL 76
K + S KKL L N I +L++K++ + S N+ I+ L S +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 77 SDNSMLLGQY--PVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK 134
M + ++L E L L ++T+ EE ++K + + + K
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 135 EERLRREAL---LKENNEEKDKCLEENILKDIE 164
E+ + L ++ K + E + K +
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.14
Identities = 7/49 (14%), Positives = 21/49 (42%)
Query: 116 EEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILKDIE 164
+ K ++ + K EE +R++ E N+ ++ ++ + +
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 31.3 bits (70), Expect = 0.19
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 115 PEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILKDIE 164
+ +E E+++ K +EE+ +R L ++ ++ E KD+E
Sbjct: 77 ADRLTQEP-ESIR----KWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
Score = 30.9 bits (69), Expect = 0.28
Identities = 9/54 (16%), Positives = 27/54 (50%), Gaps = 13/54 (24%)
Query: 106 ESSETKYVLPEEKYKEH-KENLKNFMMKQKEE--------RLRREALLKENNEE 150
+S+ E++++E K++L+ + +Q E+ R+ +A ++ + +
Sbjct: 103 AASKVM----EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 26.3 bits (57), Expect = 8.6
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 115 PE--EKYKEHKENLKNFMMKQKEERLRREALLKENNEEKD---KCLEENILKDIE 164
PE K++E E K ++ + ++ ++ + + E + K+
Sbjct: 84 PESIRKWRE--EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics,
apoptosis, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 92
Score = 30.1 bits (67), Expect = 0.18
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG 55
G + + +T+S +KH+ + ++ + +L Q +E + G
Sbjct: 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG 46
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 31.2 bits (71), Expect = 0.23
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 81 MLLGQY----PVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEE 136
LG+ ++ +G + D + ++ L E++ K+ + +M ++
Sbjct: 20 ADLGKNFKNQGIDVNPEAMAKG--MQDAMSGAQLA--LTEQQMKDVLNKFQKDLMAKRTA 75
Query: 137 RLRREALLKENNEEKDKCLEENILKD 162
EN + + L EN K
Sbjct: 76 E--FNKKADENKVKGEAFLTENKNKP 99
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast
structural genomics consortiu PSI-2, protein structure
initiative, hydrolase; NMR {Mus musculus}
Length = 86
Score = 29.4 bits (66), Expect = 0.27
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT 93
L+ L + EL+ ++ +TG + I + L LSD + LG P+++
Sbjct: 14 LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECL--DLSDRDITLGDLPIQSGDM 71
Query: 94 LFVE 97
L VE
Sbjct: 72 LIVE 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed;
ubiquitin fold, structural genomics, D7WSU128E protein;
HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Length = 95
Score = 29.7 bits (67), Expect = 0.28
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD 71
G V+L I +K KH+ + L ++T ELKQK+ +TG + +
Sbjct: 13 VGKELVDLKIIWNKTKHDVKVPL-----DSTGSELKQKIHSITGLPPAMQKV-------- 59
Query: 72 LVSHLSDNSMLLGQYPVENEMTL 94
+ L L + V + +
Sbjct: 60 MYKGLVPEDKTLREIKVTSGAKI 82
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.29
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 21/66 (31%)
Query: 130 MMKQKEERLRREALLKENNEEKDKCLE-----ENILKDIEVG----KRCKINDSDVRFGT 180
MM ++ +R N C E I++ G C G
Sbjct: 1 MMTRESID-KRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALC---------GL 50
Query: 181 VMFVGE 186
V + +
Sbjct: 51 V--LSD 54
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive
motor neuropathy, structural genomics; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 97
Score = 29.1 bits (65), Expect = 0.42
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRN-HDLVS 74
T+++ +N ++ K+L + T+ ++K L L S + +S +
Sbjct: 11 TLKIKCSNQPERQI---LEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67
Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
L ++ L Y VEN L V
Sbjct: 68 ELENDLQPLQFYSVENGDCLLV 89
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 27.4 bits (61), Expect = 1.6
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 40 NNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96
T+ ++K + L G + + L ++ LGQ VE TL V
Sbjct: 37 QETVAQIKAHVASLEGIAPEDQV--VLLAGAPL-----EDEATLGQCGVEALTTLEV 86
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific
protease 14, USP14, ubiquitin-like fold, structural
genomics; NMR {Mus musculus} SCOP: d.15.1.1
Length = 96
Score = 26.8 bits (59), Expect = 2.7
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG 55
G + + K+K E +L + K +L LTG
Sbjct: 3 SGSSGYSVTVKWGKEKFEGV----ELNTDEPPMVFKAQLFALTG 42
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Length = 90
Score = 26.4 bits (58), Expect = 3.6
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD 71
G + + + ++ + L ++T+ +LKQ L+ LTG + +
Sbjct: 3 SGSSGLPIIVKWGGQEYS----VTTLSEDDTVLDLKQFLKTLTGVLPERQKLL----GLK 54
Query: 72 LVSHLSDNSMLLGQYPVENEMTL 94
+ ++N + LG ++ +
Sbjct: 55 VKGKPAENDVKLGALKLKPNTKI 77
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 27.2 bits (60), Expect = 4.2
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 120 KEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENI 159
+++LK+ M++ + +EA KE EK L E+
Sbjct: 11 TARRQHLKSAMLQLAVTEIEKEAAAKE--VEKQNYLAEHS 48
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 26.8 bits (59), Expect = 4.8
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 120 KEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENI 159
K LK +++ ++ L REA + EK + L
Sbjct: 13 ASRKLQLKTLLLQIAKQELEREAEERR--GEKGRALSTRA 50
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Length = 320
Score = 27.1 bits (59), Expect = 5.6
Identities = 19/186 (10%), Positives = 53/186 (28%), Gaps = 19/186 (10%)
Query: 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
V + + S ++ L +T+ L+ ++ T + N
Sbjct: 5 EVVVIVKWSGKEYPVDLTD-----QDTVEVLRHEIFRKTQVRPERQKLL----NLKYKGK 55
Query: 76 LSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKE 135
+ +++ + ++ L + G+ D ++ + E + + +
Sbjct: 56 TAADNVKISALELKPNFKLMMVGSTEADIEDACSLPDNIGEVVDDFDDADEREESVAHSA 115
Query: 136 ERLRREALLKENNEEKDKCLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWV 195
+ + + + L GK+ + D D T+ + +
Sbjct: 116 VY-------LAKVQRRVRDYKIKELAPPREGKKLLVLDID---YTLFDHRSPAETGTELM 165
Query: 196 GVKLDE 201
L E
Sbjct: 166 RPYLHE 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.382
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,707,273
Number of extensions: 211046
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 73
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.1 bits)