RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13905
(248 letters)
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 118 bits (298), Expect = 4e-35
Identities = 48/100 (48%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 146 ENNEEKDKCLEENILKDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPF 203
EN +K L E K+I VG RC++ R G V +VG TKF GVWVGVK DEP
Sbjct: 1 ENESDK---LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPV 57
Query: 204 GKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFD 243
GKN+G+V V+YF+C+ YG FV+P + +GDFP L +
Sbjct: 58 GKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDE 97
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 115 bits (289), Expect = 1e-33
Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 135 EERLRREALLKENNEEKDKCLEENILKDIEVGKRCKINDSD--VRFGTVMFVGETKFSSG 192
E R ++EA + E E+ I VG RC++ D +R GTVM+VG T F G
Sbjct: 10 ELRAQQEAEAAQRLSE-----EKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPG 64
Query: 193 VWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
WVGV+ DEP GKN+G+V +YFEC+ YG FVKP +T+GD
Sbjct: 65 YWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 117 bits (293), Expect = 1e-33
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+++++G R + + + G V F+GET F+ G W GV+LDEP GKN+G V +YF+C+
Sbjct: 30 RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 87
Query: 221 NYGMFVKPGRLTIGDFPVLDP 241
YG+F ++T FP P
Sbjct: 88 KYGLFAPVHKVTKIGFPSTTP 108
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 112 bits (282), Expect = 1e-32
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 155 LEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVK 214
L++ EVG + + + G V F G+T F+ G W G++LD+P GK++G+V V+
Sbjct: 18 LQQREGAKAEVGDQVLVAGQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVR 75
Query: 215 YFECEENYGMFVKPGRLT-IGDFP 237
YF C +G+F R+ IG P
Sbjct: 76 YFTCAPRHGVFAPASRIQRIGSGP 99
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 109 bits (274), Expect = 2e-31
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKL-DEPFGKNNGTVKDVKYFECE 219
+EVG ++ ++ +G + ++G+ + V G++L DE G +GT + +YF C
Sbjct: 16 HGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA 75
Query: 220 ENYGMFVKPGRLTIG-DFPVLDP 241
+FVK F L P
Sbjct: 76 LKKALFVKLKSCRPDSRFASLQP 98
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 109 bits (274), Expect = 3e-31
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
L D +G R I + V+ G + F GET F+ G W GV+LD+P G NNGT + YFEC+
Sbjct: 22 LFDFHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK 79
Query: 220 ENYGMFVKPGRLTIGDFPVLDPFDELDE 247
E +G+F P +++ D D ++
Sbjct: 80 EKHGIFAPPQKISHIPENFDDYVDINED 107
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 102 bits (256), Expect = 7e-29
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
+ G + + S+ TV +VG T F+SG+W+G++L GKN+G V D +YF C+ N
Sbjct: 12 KLHEGSQVLLTSSN-EMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPN 70
Query: 222 YGMFVKPGRLT 232
YG+ V+P R+T
Sbjct: 71 YGVLVRPSRVT 81
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 102 bits (255), Expect = 2e-28
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+++G R I + GT+ F G T+F+SG W G++LDEP GKNNG+V V+YF+C
Sbjct: 23 LGLKLGDRVVIAGQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80
Query: 221 NYGMFVKPGRLT-IGDFP 237
YG+F +++ + D
Sbjct: 81 KYGIFAPLSKISKLKDSG 98
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 100 bits (252), Expect = 2e-28
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
+ +G R ++ + GT+ F G T+F+SG WVGV+LDEP GKN+G+V V+YF C
Sbjct: 9 LGLRLGDRVLLDGQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP 66
Query: 221 NYGMFVKPGRLT 232
G+F +++
Sbjct: 67 KQGLFASVSKIS 78
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 100 bits (251), Expect = 2e-28
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
+ VG R ++ R GTV +VG T F++G WVGV LDE GKN+GTV+ KYF C+E +
Sbjct: 2 LRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 60
Query: 223 GMFVKPGRLTI 233
G+FV+ ++ +
Sbjct: 61 GIFVRQSQIQV 71
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 100 bits (250), Expect = 4e-28
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 164 EVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYG 223
VG+R +N + + G + F+GET+F+ G W G+ LDEP GKN+G+V V+YF+CE G
Sbjct: 2 RVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKG 59
Query: 224 MFVKPGRLT 232
+F +P +LT
Sbjct: 60 IFTRPSKLT 68
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 98.2 bits (245), Expect = 2e-27
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
+++G R + + + G V F+GET F+ G W GV+LDEP GKN+G V +YF+C+ Y
Sbjct: 1 LKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 58
Query: 223 GMFVKPGRLT 232
G+F ++T
Sbjct: 59 GLFAPVHKVT 68
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 98.3 bits (245), Expect = 3e-27
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
+ + + + G+ + + G V +VG F G WVGV+LD P GKN+G++ +Y
Sbjct: 11 ADEVPEWLREGEFVTVGAH--KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQY 68
Query: 216 FECEENYGMFVKPGRLT 232
F C YG+ V+P R+
Sbjct: 69 FRCNPGYGLLVRPSRVR 85
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 95.3 bits (237), Expect = 5e-26
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 162 DIEVGKRCKINDS---DVRFGTVMFVGETKF---SSGVWVGVKLDE---PFGKNNGTVKD 212
I+VG K+ + G V F G SG++ GV+L E G +G +
Sbjct: 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQG 66
Query: 213 VKYFECEENYGMFVKPGRLTIGDFP 237
+ F+C+E+ G+FV +L + +
Sbjct: 67 KQLFQCDEDCGVFVALDKLELIESG 91
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 90.3 bits (224), Expect = 5e-24
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 162 DIEVGKRCKINDSD-VRFGTVMFVG--ETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
+E+ R + + + GTV+F K S G +VGV +D P G +G V+
Sbjct: 9 PLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSF 68
Query: 219 E-ENYGMFVKPGRLT 232
+ + +
Sbjct: 69 ACVESTILLHINDII 83
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 56.8 bits (137), Expect = 2e-11
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72
G V ++I++S + S K+ + TI E K KLEL+ G +S M + LY +
Sbjct: 4 GSSGVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKF 60
Query: 73 VSHLSDNSMLLGQYPVENEMTLFV 96
S L LLG YPV++ + V
Sbjct: 61 YSKLDQEDALLGSYPVDDGCRIHV 84
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 55.6 bits (134), Expect = 4e-11
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL 76
+L IT + KK ++ +LK+KLEL+ G +M I L++ + L L
Sbjct: 5 YDLEITTNATDFPM---EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGEL 61
Query: 77 SDNSMLLGQYPVENEMTLFV 96
+D + L V + +
Sbjct: 62 TDGAKSLKDLGVRDGYRIHA 81
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 44.5 bits (105), Expect = 5e-07
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD-LVS 74
T+++ +N ++ K+L + T+ ++K L L S + +S +
Sbjct: 11 TLKIKCSNQPERQILE---KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67
Query: 75 HLSDNSMLLGQYPVENEMTLFVE 97
L ++ L Y VEN L V
Sbjct: 68 ELENDLQPLQFYSVENGDCLLVR 90
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 35.6 bits (82), Expect = 5e-04
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 21 ITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNS 80
+T+S +KH+ + ++ + +L Q +E + G S + + L +
Sbjct: 6 VTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGK------SLKEME 59
Query: 81 MLLGQYPVENEMTLFVEG 98
L +++ + + G
Sbjct: 60 TPLSALGIQDGCRVMLIG 77
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 31.9 bits (72), Expect = 0.016
Identities = 8/82 (9%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
+++ + K+K E + N+++ + K+ + + + +
Sbjct: 31 KIIKVTVKTPKEKEEFAVPE-----NSSVQQFKEAISKRFKSQTDQLVLIFAG------- 78
Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
+ + L Q+ + + +T+ +
Sbjct: 79 KILKDQDTLIQHGIHDGLTVHL 100
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 29.9 bits (67), Expect = 0.084
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72
G V+L I +K KH+ + L ++T ELKQK+ +TG + + +
Sbjct: 14 GKELVDLKIIWNKTKHDVKVPL-----DSTGSELKQKIHSITGLPPAMQKVMYKGLVPE- 67
Query: 73 VSHLSDNSMLLGQYPVENEMTLFVEG 98
L + V + + V G
Sbjct: 68 -------DKTLREIKVTSGAKIMVVG 86
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 27.4 bits (61), Expect = 0.35
Identities = 9/81 (11%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
++ ++I + +DK E + +T+ + K+ + G +N + +
Sbjct: 1 SLNIHIKSGQDKWEV-----NVAPESTVLQFKEAINKANGIPVANQRLIYSGK------- 48
Query: 76 LSDNSMLLGQYPVENEMTLFV 96
+ + + Y +++ ++ +
Sbjct: 49 ILKDDQTVESYHIQDGHSVHL 69
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 26.5 bits (58), Expect = 1.2
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
+++ + KDK + + TI +LK+++ + +
Sbjct: 6 HLIKVTVKTPKDKEDF-----SVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG------- 53
Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
+ + L Q V + +T+ +
Sbjct: 54 KILKDPDSLAQCGVRDGLTVHL 75
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 25.7 bits (56), Expect = 2.6
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 1 MLTQVEYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSN 60
++ + +++ G T+ + N D + ++ L + +G LK+K+ ++
Sbjct: 14 LVPEDQFLAQHPGPATIRVSKPNENDGQFMEITVQSL--SENVGSLKEKIAGEIQIPANK 71
Query: 61 MTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96
+S ++M L Y V L +
Sbjct: 72 QKLSGKAG-------FLKDNMSLAHYNVGAGEILTL 100
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 26.6 bits (58), Expect = 3.3
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 112 YVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILKDIE 164
+V EEK + +N++ + ++ E L + + + LE+ D+E
Sbjct: 248 FVTREEKMRLAIQNIEQELEERLAE------LRAQGKLLEAQRLEQRTRYDLE 294
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 24.9 bits (54), Expect = 4.8
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD 71
+E+ + K K ++TIG+LK+ + TG + + + +
Sbjct: 24 GAATMIEVVCNDRLGKKVRV----KCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWY---- 75
Query: 72 LVSHLSDNSMLLGQYPVENEMTL 94
+ + + LG Y + + M L
Sbjct: 76 ---TIFKDHVSLGDYEIHDGMNL 95
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus
laevis) [TaxId: 8355]}
Length = 284
Score = 25.3 bits (55), Expect = 8.6
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 105 LESSETKYVLPEEKYKEH---KENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILK 161
+++ + V PEE + + L+ +MK + L R+ K + L
Sbjct: 81 MDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAKPTRNDFKV-----QLY 135
Query: 162 DI--EVGKRCKINDSDVRFGTVMFVGETKFSSGV-----WVGVKLDEPFGKNN 207
+I ++ R + D +FVGE+K + WV L E +
Sbjct: 136 NIWFQLYSRAPGSRPDSCGFEHVFVGESKRGQEMMGLHNWVQFYLQEKRKNID 188
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 24.6 bits (53), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 110 TKYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKE 146
TK + EE + +++ ++++ E LRRE LKE
Sbjct: 100 TKPCMLEEIELTINKAIEHRKLRKENELLRREKDLKE 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.382
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 911,933
Number of extensions: 42328
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 42
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.9 bits)