Query psy13906
Match_columns 914
No_of_seqs 335 out of 2969
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:29:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1676|consensus 100.0 5.3E-42 1.1E-46 381.5 29.9 338 260-785 52-395 (600)
2 KOG1676|consensus 100.0 1E-38 2.2E-43 355.4 32.5 336 78-597 52-391 (600)
3 KOG2193|consensus 100.0 4.2E-40 9.2E-45 348.0 19.5 365 78-596 197-565 (584)
4 KOG2192|consensus 100.0 8.4E-39 1.8E-43 320.5 24.2 326 438-783 46-388 (390)
5 KOG2193|consensus 100.0 8.1E-38 1.8E-42 330.8 23.9 331 258-786 195-571 (584)
6 KOG2192|consensus 100.0 3E-33 6.4E-38 280.7 24.4 322 1-337 54-387 (390)
7 KOG2190|consensus 100.0 5.6E-31 1.2E-35 300.1 30.9 333 438-782 41-412 (485)
8 KOG2190|consensus 100.0 4.9E-31 1.1E-35 300.6 25.9 341 1-595 49-409 (485)
9 KOG2191|consensus 99.9 3.1E-24 6.7E-29 222.6 21.2 267 439-778 38-314 (402)
10 KOG2191|consensus 99.9 7.2E-22 1.6E-26 205.1 20.2 260 1-334 45-315 (402)
11 KOG2208|consensus 99.8 2.6E-19 5.6E-24 215.9 12.8 325 1-563 353-678 (753)
12 KOG2208|consensus 99.6 3.8E-16 8.2E-21 188.7 9.9 432 3-786 209-642 (753)
13 TIGR03665 arCOG04150 arCOG0415 99.5 5.3E-14 1.2E-18 141.7 11.3 139 444-597 2-153 (172)
14 TIGR03665 arCOG04150 arCOG0415 99.5 9.7E-14 2.1E-18 139.8 12.2 137 1-151 4-152 (172)
15 PRK13763 putative RNA-processi 99.5 2.5E-13 5.3E-18 137.8 12.6 143 440-597 3-159 (180)
16 PRK13763 putative RNA-processi 99.5 3.3E-13 7.2E-18 136.9 12.4 131 1-151 9-158 (180)
17 KOG2279|consensus 99.2 2.4E-11 5.3E-16 135.3 10.6 292 438-777 66-366 (608)
18 cd02396 PCBP_like_KH K homolog 99.2 2.5E-11 5.3E-16 102.3 7.3 63 709-773 2-64 (65)
19 cd02396 PCBP_like_KH K homolog 99.2 4.5E-11 9.7E-16 100.7 7.0 64 527-590 2-65 (65)
20 cd02394 vigilin_like_KH K homo 99.1 6.8E-11 1.5E-15 98.7 6.3 61 709-774 2-62 (62)
21 KOG2279|consensus 99.1 2.8E-10 6E-15 127.0 10.9 291 78-502 66-363 (608)
22 PF00013 KH_1: KH domain syndr 99.1 1.3E-10 2.8E-15 96.3 5.4 60 708-773 1-60 (60)
23 cd02393 PNPase_KH Polynucleoti 99.1 2.6E-10 5.6E-15 94.6 6.9 58 708-774 3-61 (61)
24 cd00105 KH-I K homology RNA-bi 99.0 7.7E-10 1.7E-14 92.7 7.3 63 709-774 2-64 (64)
25 cd02394 vigilin_like_KH K homo 98.9 1E-09 2.2E-14 91.5 5.5 61 527-590 2-62 (62)
26 PF00013 KH_1: KH domain syndr 98.9 1.6E-09 3.4E-14 89.8 5.8 60 263-328 1-60 (60)
27 cd00105 KH-I K homology RNA-bi 98.8 8.9E-09 1.9E-13 86.2 7.0 62 527-589 2-63 (64)
28 cd02393 PNPase_KH Polynucleoti 98.8 8.7E-09 1.9E-13 85.5 6.7 58 263-329 3-61 (61)
29 PF13014 KH_3: KH domain 98.7 2E-08 4.3E-13 77.2 5.0 43 717-761 1-43 (43)
30 PF13014 KH_3: KH domain 98.7 2.4E-08 5.1E-13 76.8 5.0 43 535-577 1-43 (43)
31 smart00322 KH K homology RNA-b 98.7 1E-07 2.2E-12 80.3 8.4 67 706-777 2-68 (69)
32 COG1094 Predicted RNA-binding 98.6 4.7E-07 1E-11 90.6 11.1 142 79-333 7-163 (194)
33 COG1094 Predicted RNA-binding 98.5 9.3E-07 2E-11 88.5 11.7 144 440-597 8-166 (194)
34 smart00322 KH K homology RNA-b 98.5 3.9E-07 8.4E-12 76.7 7.4 66 440-505 3-68 (69)
35 KOG2113|consensus 98.4 7.1E-07 1.5E-11 93.6 7.2 150 438-592 24-180 (394)
36 KOG2113|consensus 98.1 2.4E-06 5.2E-11 89.7 4.5 141 1-146 32-179 (394)
37 cd02395 SF1_like-KH Splicing f 98.1 1.1E-05 2.3E-10 76.3 7.3 63 716-778 15-94 (120)
38 cd02395 SF1_like-KH Splicing f 97.9 3.1E-05 6.7E-10 73.2 7.0 63 271-333 15-94 (120)
39 PRK08406 transcription elongat 97.4 0.00023 5E-09 69.3 5.8 38 525-562 32-69 (140)
40 PRK08406 transcription elongat 97.3 0.00042 9E-09 67.5 5.9 104 440-561 32-135 (140)
41 TIGR02696 pppGpp_PNP guanosine 97.3 0.0012 2.7E-08 79.4 10.9 88 52-150 554-642 (719)
42 TIGR02696 pppGpp_PNP guanosine 97.2 0.0017 3.6E-08 78.3 10.7 89 496-595 553-642 (719)
43 KOG0119|consensus 97.0 0.0015 3.3E-08 73.3 7.3 75 261-335 137-231 (554)
44 KOG0336|consensus 97.0 0.0018 4E-08 71.2 7.7 73 704-782 44-116 (629)
45 KOG0119|consensus 97.0 0.0044 9.5E-08 69.8 10.5 73 524-596 137-231 (554)
46 TIGR03591 polynuc_phos polyrib 96.9 0.0032 7E-08 77.1 9.3 64 79-149 550-614 (684)
47 KOG0336|consensus 96.8 0.0028 6.2E-08 69.8 7.4 71 438-509 45-115 (629)
48 TIGR03591 polynuc_phos polyrib 96.7 0.0041 9E-08 76.2 9.0 66 523-595 549-615 (684)
49 TIGR01952 nusA_arch NusA famil 96.4 0.002 4.4E-08 62.5 2.5 97 2-116 40-136 (141)
50 PLN00207 polyribonucleotide nu 96.3 0.012 2.6E-07 72.7 9.5 66 78-150 683-750 (891)
51 TIGR01952 nusA_arch NusA famil 96.3 0.0048 1E-07 59.9 4.8 103 441-561 34-136 (141)
52 PLN00207 polyribonucleotide nu 96.2 0.0084 1.8E-07 74.0 7.4 66 523-595 683-750 (891)
53 KOG2814|consensus 96.2 0.0068 1.5E-07 65.4 5.3 69 441-509 58-127 (345)
54 COG0195 NusA Transcription elo 96.1 0.0049 1.1E-07 62.9 3.9 95 3-117 84-179 (190)
55 COG1185 Pnp Polyribonucleotide 96.1 0.017 3.8E-07 68.3 8.8 103 39-151 506-617 (692)
56 KOG1588|consensus 96.0 0.053 1.1E-06 57.3 10.9 74 522-595 89-191 (259)
57 KOG4369|consensus 96.0 0.0043 9.4E-08 75.3 3.3 74 703-778 1336-1409(2131)
58 KOG1588|consensus 96.0 0.023 5.1E-07 59.9 8.1 42 436-477 88-135 (259)
59 COG1185 Pnp Polyribonucleotide 95.9 0.024 5.2E-07 67.1 8.6 104 483-596 505-617 (692)
60 KOG2814|consensus 95.6 0.021 4.6E-07 61.7 6.0 71 706-781 56-127 (345)
61 PRK00106 hypothetical protein; 95.3 0.038 8.2E-07 65.2 7.6 66 704-777 222-289 (535)
62 TIGR03319 YmdA_YtgF conserved 95.3 0.036 7.7E-07 65.7 7.5 66 704-777 201-268 (514)
63 PF14611 SLS: Mitochondrial in 95.3 0.51 1.1E-05 49.4 15.2 122 3-149 34-164 (210)
64 PRK12704 phosphodiesterase; Pr 95.2 0.039 8.4E-07 65.5 7.2 65 705-777 208-274 (520)
65 COG0195 NusA Transcription elo 95.2 0.032 7E-07 57.0 5.6 100 444-562 80-179 (190)
66 PRK04163 exosome complex RNA-b 95.2 0.044 9.5E-07 58.5 6.8 61 709-778 147-208 (235)
67 PF14611 SLS: Mitochondrial in 95.0 0.51 1.1E-05 49.4 14.4 128 444-596 30-166 (210)
68 cd02134 NusA_KH NusA_K homolog 95.0 0.029 6.3E-07 46.5 3.8 36 707-742 25-60 (61)
69 TIGR03319 YmdA_YtgF conserved 94.9 0.053 1.1E-06 64.3 7.3 67 259-333 201-269 (514)
70 PRK00106 hypothetical protein; 94.9 0.06 1.3E-06 63.6 7.4 67 259-333 222-290 (535)
71 PRK11824 polynucleotide phosph 94.8 0.05 1.1E-06 67.0 6.7 65 79-150 553-618 (693)
72 PRK11824 polynucleotide phosph 94.7 0.05 1.1E-06 67.0 6.5 65 524-595 553-618 (693)
73 PRK12704 phosphodiesterase; Pr 94.5 0.074 1.6E-06 63.2 7.0 66 260-333 208-275 (520)
74 COG5176 MSL5 Splicing factor ( 94.5 0.049 1.1E-06 54.8 4.6 67 261-333 147-220 (269)
75 cd02134 NusA_KH NusA_K homolog 94.4 0.046 9.9E-07 45.3 3.7 36 440-475 25-60 (61)
76 PRK04163 exosome complex RNA-b 94.0 0.12 2.6E-06 55.2 6.9 63 264-335 147-210 (235)
77 TIGR01953 NusA transcription t 93.7 0.11 2.4E-06 58.3 6.1 95 4-117 243-338 (341)
78 PRK12328 nusA transcription el 93.5 0.15 3.2E-06 57.3 6.6 94 4-117 251-345 (374)
79 KOG4369|consensus 93.4 0.076 1.6E-06 65.2 4.4 77 707-786 781-857 (2131)
80 PRK12327 nusA transcription el 93.3 0.14 2.9E-06 57.9 5.9 95 4-117 245-340 (362)
81 TIGR01953 NusA transcription t 93.2 0.22 4.8E-06 55.9 7.4 96 449-563 243-339 (341)
82 PRK12328 nusA transcription el 93.1 0.15 3.3E-06 57.2 5.9 41 707-747 308-348 (374)
83 PRK12327 nusA transcription el 92.6 0.27 5.8E-06 55.6 7.1 96 449-563 245-341 (362)
84 PRK12329 nusA transcription el 92.6 0.2 4.3E-06 57.2 6.0 95 4-117 277-372 (449)
85 COG5176 MSL5 Splicing factor ( 92.5 0.15 3.3E-06 51.4 4.4 69 79-151 147-222 (269)
86 KOG1067|consensus 92.5 0.41 8.8E-06 55.3 8.3 97 492-596 564-661 (760)
87 PRK12329 nusA transcription el 92.0 0.23 5E-06 56.7 5.6 95 449-562 277-372 (449)
88 PRK09202 nusA transcription el 91.8 0.29 6.3E-06 57.2 6.4 94 4-117 245-339 (470)
89 PRK00468 hypothetical protein; 91.6 0.18 4E-06 43.6 3.2 32 523-554 28-59 (75)
90 PRK12705 hypothetical protein; 91.5 0.22 4.7E-06 58.6 4.9 65 704-776 195-261 (508)
91 COG1837 Predicted RNA-binding 91.0 0.23 5E-06 42.8 3.3 33 522-554 27-59 (76)
92 COG5166 Uncharacterized conser 91.0 0.48 1E-05 54.1 6.7 93 7-117 392-486 (657)
93 PRK12705 hypothetical protein; 90.9 0.27 5.7E-06 57.9 4.8 65 260-332 196-262 (508)
94 KOG1067|consensus 90.9 0.68 1.5E-05 53.6 7.8 97 47-151 564-661 (760)
95 PRK02821 hypothetical protein; 90.6 0.25 5.4E-06 42.9 3.1 32 524-555 30-61 (77)
96 PRK09202 nusA transcription el 90.5 0.38 8.2E-06 56.3 5.6 94 449-562 245-339 (470)
97 PRK00468 hypothetical protein; 90.5 0.27 5.9E-06 42.5 3.3 31 78-108 28-58 (75)
98 PRK02821 hypothetical protein; 90.0 0.24 5.1E-06 43.0 2.5 34 705-738 29-62 (77)
99 COG1837 Predicted RNA-binding 89.0 0.43 9.2E-06 41.2 3.3 32 77-108 27-58 (76)
100 KOG3273|consensus 88.7 0.58 1.3E-05 47.1 4.5 126 465-598 99-234 (252)
101 PRK01064 hypothetical protein; 88.2 0.55 1.2E-05 40.9 3.5 32 523-554 28-59 (78)
102 PRK01064 hypothetical protein; 87.6 0.45 9.8E-06 41.4 2.7 33 704-736 27-59 (78)
103 cd02410 archeal_CPSF_KH The ar 86.7 1.8 3.8E-05 42.1 6.4 89 457-563 23-114 (145)
104 KOG3273|consensus 85.5 0.49 1.1E-05 47.6 2.0 53 715-777 177-229 (252)
105 cd02410 archeal_CPSF_KH The ar 82.4 5.6 0.00012 38.7 7.7 92 12-118 23-114 (145)
106 PF13184 KH_5: NusA-like KH do 82.0 1.4 3E-05 37.5 3.1 35 710-744 6-46 (69)
107 COG5166 Uncharacterized conser 81.6 1.1 2.3E-05 51.4 2.9 124 453-595 393-524 (657)
108 cd02409 KH-II KH-II (K homolo 77.1 3.2 6.9E-05 34.3 3.8 34 707-740 25-58 (68)
109 KOG2874|consensus 76.3 4.5 9.7E-05 43.1 5.3 51 274-334 161-211 (356)
110 COG1855 ATPase (PilT family) [ 76.0 1.9 4.1E-05 49.2 2.7 39 708-746 487-525 (604)
111 PF13083 KH_4: KH domain; PDB: 75.8 1.6 3.5E-05 37.4 1.7 34 78-111 27-60 (73)
112 COG1782 Predicted metal-depend 75.6 6.6 0.00014 45.5 6.8 95 9-118 43-137 (637)
113 PF13083 KH_4: KH domain; PDB: 75.1 1.7 3.7E-05 37.2 1.6 35 705-739 27-61 (73)
114 COG1097 RRP4 RNA-binding prote 74.4 6.6 0.00014 41.4 6.0 58 264-330 148-206 (239)
115 COG1097 RRP4 RNA-binding prote 73.6 6.3 0.00014 41.6 5.6 58 83-147 149-207 (239)
116 cd02409 KH-II KH-II (K homolo 73.2 3.2 6.9E-05 34.3 2.8 34 440-473 25-58 (68)
117 PF13184 KH_5: NusA-like KH do 73.2 2.8 6E-05 35.7 2.4 37 526-562 4-46 (69)
118 COG1782 Predicted metal-depend 73.0 5.1 0.00011 46.3 5.1 96 453-563 42-137 (637)
119 KOG2874|consensus 72.7 6.9 0.00015 41.7 5.6 53 7-64 161-213 (356)
120 COG1855 ATPase (PilT family) [ 72.3 3 6.4E-05 47.7 3.0 39 263-301 487-525 (604)
121 PRK13764 ATPase; Provisional 68.7 3.7 8E-05 49.7 3.0 42 706-747 480-521 (602)
122 TIGR03675 arCOG00543 arCOG0054 67.6 9.8 0.00021 46.7 6.4 94 455-563 38-131 (630)
123 cd02414 jag_KH jag_K homology 66.7 6 0.00013 34.3 3.2 33 526-558 25-57 (77)
124 PF07650 KH_2: KH domain syndr 63.9 4.2 9E-05 35.3 1.7 34 80-113 25-58 (78)
125 PF07650 KH_2: KH domain syndr 63.5 4.7 0.0001 34.9 1.9 35 707-741 25-59 (78)
126 PRK13764 ATPase; Provisional 62.1 6.9 0.00015 47.4 3.6 42 261-302 480-521 (602)
127 cd02414 jag_KH jag_K homology 61.8 8.2 0.00018 33.5 3.1 33 81-113 25-57 (77)
128 TIGR03675 arCOG00543 arCOG0054 58.1 25 0.00054 43.2 7.4 93 11-118 39-131 (630)
129 cd02413 40S_S3_KH K homology R 54.4 4.5 9.8E-05 35.6 0.2 32 1-32 36-67 (81)
130 cd02413 40S_S3_KH K homology R 53.2 15 0.00032 32.3 3.3 36 80-115 30-65 (81)
131 PRK06418 transcription elongat 49.8 18 0.0004 36.3 3.7 37 525-562 61-97 (166)
132 PRK06418 transcription elongat 47.8 23 0.00049 35.7 4.0 37 80-117 61-97 (166)
133 TIGR03802 Asp_Ala_antiprt aspa 46.8 1.1E+02 0.0024 37.2 10.4 116 14-144 232-376 (562)
134 PF09849 DUF2076: Uncharacteri 44.4 1.1E+02 0.0023 33.0 8.7 23 886-908 178-200 (247)
135 cd00652 TBP_TLF TATA box bindi 43.4 2.4E+02 0.0051 28.7 10.7 100 484-595 57-174 (174)
136 cd02412 30S_S3_KH K homology R 42.1 22 0.00049 33.1 2.8 30 81-110 62-91 (109)
137 cd02412 30S_S3_KH K homology R 40.6 13 0.00029 34.6 1.1 27 1-27 67-93 (109)
138 PF09869 DUF2096: Uncharacteri 40.1 59 0.0013 32.4 5.4 43 15-61 126-168 (169)
139 cd02411 archeal_30S_S3_KH K ho 37.6 18 0.00039 32.0 1.4 23 2-24 45-67 (85)
140 cd02411 archeal_30S_S3_KH K ho 37.0 35 0.00076 30.2 3.1 28 82-109 40-67 (85)
141 COG0092 RpsC Ribosomal protein 36.9 24 0.00053 37.2 2.4 25 1-25 57-81 (233)
142 COG1702 PhoH Phosphate starvat 36.4 95 0.0021 34.9 6.9 57 268-334 21-79 (348)
143 PRK03818 putative transporter; 36.1 1.9E+02 0.0041 35.1 10.1 116 14-143 218-358 (552)
144 TIGR03802 Asp_Ala_antiprt aspa 35.7 2.1E+02 0.0045 34.8 10.4 117 459-590 232-377 (562)
145 cd00652 TBP_TLF TATA box bindi 35.1 4E+02 0.0087 27.0 10.8 100 38-149 56-173 (174)
146 COG0092 RpsC Ribosomal protein 35.0 32 0.0007 36.3 2.9 30 79-108 50-79 (233)
147 COG1847 Jag Predicted RNA-bind 32.6 46 0.001 34.5 3.5 107 35-150 44-158 (208)
148 COG1702 PhoH Phosphate starvat 31.9 1.1E+02 0.0023 34.5 6.4 59 714-782 22-82 (348)
149 cd04517 TLF TBP-like factors ( 31.9 4.8E+02 0.01 26.5 10.7 100 484-595 57-174 (174)
150 PRK03818 putative transporter; 31.4 2.5E+02 0.0054 34.0 10.1 116 459-588 218-358 (552)
151 PF09869 DUF2096: Uncharacteri 30.6 1.2E+02 0.0026 30.4 5.8 57 77-147 110-166 (169)
152 COG1847 Jag Predicted RNA-bind 30.0 55 0.0012 34.0 3.6 97 492-596 62-159 (208)
153 KOG1960|consensus 27.7 8.2E+02 0.018 28.1 12.1 140 457-596 111-296 (531)
154 COG4010 Uncharacterized protei 27.6 1.4E+02 0.003 29.1 5.5 44 15-62 126-169 (170)
155 KOG1960|consensus 26.8 6.4E+02 0.014 28.9 11.1 74 713-786 220-302 (531)
156 cd04516 TBP_eukaryotes eukaryo 26.2 6.5E+02 0.014 25.5 10.6 99 484-595 57-173 (174)
157 PF02749 QRPTase_N: Quinolinat 24.8 2E+02 0.0044 25.5 5.9 54 281-334 33-86 (88)
158 cd04517 TLF TBP-like factors ( 24.7 7.4E+02 0.016 25.1 11.0 99 39-149 57-173 (174)
159 PF02749 QRPTase_N: Quinolinat 24.1 2.1E+02 0.0046 25.3 6.0 55 725-779 32-86 (88)
160 PTZ00084 40S ribosomal protein 23.1 59 0.0013 34.3 2.4 29 1-29 50-78 (220)
161 COG2101 SPT15 TATA-box binding 22.6 8.1E+02 0.018 24.9 9.9 99 485-595 64-181 (185)
162 TIGR00436 era GTP-binding prot 22.3 78 0.0017 34.3 3.3 29 525-553 221-250 (270)
163 PLN00062 TATA-box-binding prot 22.1 6.5E+02 0.014 25.7 9.7 98 485-595 58-173 (179)
164 COG1159 Era GTPase [General fu 21.9 1.6E+02 0.0035 32.5 5.5 37 79-115 228-273 (298)
165 TIGR00436 era GTP-binding prot 21.3 88 0.0019 33.9 3.5 29 80-108 221-250 (270)
166 KOG1423|consensus 20.7 89 0.0019 34.6 3.2 33 523-555 326-359 (379)
167 CHL00048 rps3 ribosomal protei 20.5 74 0.0016 33.5 2.6 63 1-63 72-134 (214)
No 1
>KOG1676|consensus
Probab=100.00 E-value=5.3e-42 Score=381.49 Aligned_cols=338 Identities=30% Similarity=0.459 Sum_probs=274.2
Q ss_pred cceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhcc
Q psy13906 260 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRANL 339 (914)
Q Consensus 260 ~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~~~~ 339 (914)
+.++.+..||+..+++||||+|+.|..|.++|||+|+|... .....+|.+.|.|.+++|+.|+.||.+++...+
T Consensus 52 ~~~~~~~~VPd~~VglvIGrgG~qI~~iqq~SgCrvq~~~~---~s~~~~r~~~~~G~pe~v~~aK~li~evv~r~~--- 125 (600)
T KOG1676|consen 52 TVQTERYKVPDEAVGLVIGRGGSQIQAIQQKSGCRVQIAAD---PSGIGYRSVDLTGSPENVEVAKQLIGEVVSRGR--- 125 (600)
T ss_pred cccccccCCCchhceeEeeccHHHhhhhhhhcCCccccCCC---CCCcccccccccCCcccHHHHHHhhhhhhhccC---
Confidence 34578889999999999999999999999999999998754 335578999999999999999999998885321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCccccccccCCCcCCCCCCCCCCCCCCCC
Q psy13906 340 NGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLSALGGLSDLLGGGSSGGGSGNSG 419 (914)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (914)
+|..+|.
T Consensus 126 ------------------~~~~~~~------------------------------------------------------- 132 (600)
T KOG1676|consen 126 ------------------PPGGFPD------------------------------------------------------- 132 (600)
T ss_pred ------------------CCCCccc-------------------------------------------------------
Confidence 1111111
Q ss_pred CCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCC----CCeeEEEEEcChhHHH
Q psy13906 420 GFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSS----TPERIVTVIGSMDSLF 495 (914)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~----~~ervv~I~G~~e~V~ 495 (914)
+ ...+..+..|+||...+|+||||+|++||+|++.+||++.+..++ +..+.+.|+|+++.|+
T Consensus 133 ----------~----q~~~~ttqeI~IPa~k~GlIIGKgGETikqlqe~sg~k~i~iqd~~~~~~~~KplritGdp~~ve 198 (600)
T KOG1676|consen 133 ----------N----QGSVETTQEILIPANKCGLIIGKGGETIKQLQEQSGVKMILVQDGSIATGADKPLRITGDPDKVE 198 (600)
T ss_pred ----------c----CCccceeeeeccCccceeeEeccCccHHHHHHhhcCCceEEEecCCcCCCCCCceeecCCHHHHH
Confidence 0 013567889999999999999999999999999999998887653 3667899999999999
Q ss_pred HHHHHHHHHHHHhhhccccc--CCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceE
Q psy13906 496 RAFSLITKNIEEFHKNQNKH--LGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREV 573 (914)
Q Consensus 496 ~A~~~I~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V 573 (914)
.|+.++.++|.+..+..... ..+.+.-...+.+|.||++.||.||||+|++||.|+.+||++|+|.+|..|.+.||++
T Consensus 199 ~a~~lV~dil~e~~~~~~g~~~~~g~~~g~~~~~~V~VPr~~VG~IIGkgGE~IKklq~etG~KIQfkpDd~p~speR~~ 278 (600)
T KOG1676|consen 199 QAKQLVADILREEDDEVPGSGGHAGVRGGGSATREVKVPRSKVGIIIGKGGEMIKKLQNETGAKIQFKPDDDPSSPERPA 278 (600)
T ss_pred HHHHHHHHHHHhcccCCCccccccCcCccccceeEEeccccceeeEEecCchHHHHHhhccCceeEeecCCCCCCcccee
Confidence 99999999999743321111 1111223345899999999999999999999999999999999999998899999999
Q ss_pred EEecCHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCC
Q psy13906 574 NIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGG 653 (914)
Q Consensus 574 ~I~G~~e~V~~A~~~I~~~l~e~~~~~~~~py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~ 653 (914)
.|.|+.++|+.|.++|.++|++..... + .
T Consensus 279 ~IiG~~d~ie~Aa~lI~eii~~~~~~~------~---------------------------------------------~ 307 (600)
T KOG1676|consen 279 QIIGTVDQIEHAAELINEIIAEAEAGA------G---------------------------------------------G 307 (600)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhccC------C---------------------------------------------C
Confidence 999999999999999999998852100 0 0
Q ss_pred CCCCCCChHHHHHhhhcccccCCCCCCCccccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHH
Q psy13906 654 GMGGGLNAAALAALASSQLKTNHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIR 733 (914)
Q Consensus 654 ~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~ 733 (914)
.+.+|. .......++.||.+.||.||||+|++|+.|.
T Consensus 308 ~~~~G~-------------------------------------------P~~~~~fy~~VPa~KcGLvIGrGGEtIK~in 344 (600)
T KOG1676|consen 308 GMGGGA-------------------------------------------PGLVAQFYMKVPADKCGLVIGRGGETIKQIN 344 (600)
T ss_pred CcCCCC-------------------------------------------ccceeeEEEeccccccccccCCCccchhhhc
Confidence 000000 0112267899999999999999999999999
Q ss_pred hhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhccc
Q psy13906 734 KISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRANLN 785 (914)
Q Consensus 734 ~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~~~ 785 (914)
++|||++.+.+. .+..+..+++|+|+|++.+|+.|+.||+.+|...-.+..
T Consensus 345 ~qSGA~~el~r~-~p~~~~~ektf~IrG~~~QIdhAk~LIr~kvg~~~~n~~ 395 (600)
T KOG1676|consen 345 QQSGARCELSRQ-PPNGNPKEKTFVIRGDKRQIDHAKQLIRDKVGDIAPNTP 395 (600)
T ss_pred ccCCccccccCC-CCCCCccceEEEEecCcccchHHHHHHHHHhcccCCCCC
Confidence 999999999987 345567889999999999999999999999976544433
No 2
>KOG1676|consensus
Probab=100.00 E-value=1e-38 Score=355.40 Aligned_cols=336 Identities=30% Similarity=0.460 Sum_probs=267.9
Q ss_pred cceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhccCCCCCCC
Q psy13906 78 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 157 (914)
Q Consensus 78 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~ 157 (914)
...+.+..||...++.|||++|+.|+.|..+|||+|++..+. -.-..|.+.++|.+++|+.|+.+|.+++.....-.
T Consensus 52 ~~~~~~~~VPd~~VglvIGrgG~qI~~iqq~SgCrvq~~~~~-s~~~~r~~~~~G~pe~v~~aK~li~evv~r~~~~~-- 128 (600)
T KOG1676|consen 52 TVQTERYKVPDEAVGLVIGRGGSQIQAIQQKSGCRVQIAADP-SGIGYRSVDLTGSPENVEVAKQLIGEVVSRGRPPG-- 128 (600)
T ss_pred cccccccCCCchhceeEeeccHHHhhhhhhhcCCccccCCCC-CCcccccccccCCcccHHHHHHhhhhhhhccCCCC--
Confidence 467889999999999999999999999999999999976642 12357899999999999999999988776431000
Q ss_pred CCCCCCCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhcccccCCCCCCCCC
Q psy13906 158 IPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQN 237 (914)
Q Consensus 158 ~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~ 237 (914)
.
T Consensus 129 ----~--------------------------------------------------------------------------- 129 (600)
T KOG1676|consen 129 ----G--------------------------------------------------------------------------- 129 (600)
T ss_pred ----C---------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccCCCCCCCCCccccccccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcC
Q psy13906 238 QNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGT 317 (914)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~ 317 (914)
|++.+ ....++.+|.||.+.++.||||+|.+|++|++.+||++.+..+.. .....++.+.|+|+
T Consensus 130 -~~~~q--------------~~~~ttqeI~IPa~k~GlIIGKgGETikqlqe~sg~k~i~iqd~~-~~~~~~KplritGd 193 (600)
T KOG1676|consen 130 -FPDNQ--------------GSVETTQEILIPANKCGLIIGKGGETIKQLQEQSGVKMILVQDGS-IATGADKPLRITGD 193 (600)
T ss_pred -ccccC--------------CccceeeeeccCccceeeEeccCccHHHHHHhhcCCceEEEecCC-cCCCCCCceeecCC
Confidence 00000 012458999999999999999999999999999999988876533 22336799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCcccccc
Q psy13906 318 PDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLS 397 (914)
Q Consensus 318 ~e~v~~A~~~I~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 397 (914)
++.|+.|+.|+.++|++......
T Consensus 194 p~~ve~a~~lV~dil~e~~~~~~--------------------------------------------------------- 216 (600)
T KOG1676|consen 194 PDKVEQAKQLVADILREEDDEVP--------------------------------------------------------- 216 (600)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC---------------------------------------------------------
Confidence 99999999999999975221000
Q ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeC
Q psy13906 398 ALGGLSDLLGGGSSGGGSGNSGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD 477 (914)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~ 477 (914)
++++..+ .+++ ...+++|.||+..||.||||+|++||+|+.+||++|+|.+
T Consensus 217 -------------g~~~~~g-~~~g---------------~~~~~~V~VPr~~VG~IIGkgGE~IKklq~etG~KIQfkp 267 (600)
T KOG1676|consen 217 -------------GSGGHAG-VRGG---------------GSATREVKVPRSKVGIIIGKGGEMIKKLQNETGAKIQFKP 267 (600)
T ss_pred -------------ccccccC-cCcc---------------ccceeEEeccccceeeEEecCchHHHHHhhccCceeEeec
Confidence 0000000 0000 1237799999999999999999999999999999999986
Q ss_pred C---CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhc
Q psy13906 478 S---STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETS 554 (914)
Q Consensus 478 ~---~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~t 554 (914)
. .+.||.+.|.|+++.|++|.++|.++|++.........+++..-....+.+.||.+.||+||||+|++||.|..+|
T Consensus 268 Dd~p~speR~~~IiG~~d~ie~Aa~lI~eii~~~~~~~~~~~~~G~P~~~~~fy~~VPa~KcGLvIGrGGEtIK~in~qS 347 (600)
T KOG1676|consen 268 DDDPSSPERPAQIIGTVDQIEHAAELINEIIAEAEAGAGGGMGGGAPGLVAQFYMKVPADKCGLVIGRGGETIKQINQQS 347 (600)
T ss_pred CCCCCCccceeeeecCHHHHHHHHHHHHHHHHHHhccCCCCcCCCCccceeeEEEeccccccccccCCCccchhhhcccC
Confidence 5 5789999999999999999999999999877654333222222222388999999999999999999999999999
Q ss_pred CceEEEccC-CCCCCCcceEEEecCHHHHHHHHHHHHHHhccCC
Q psy13906 555 GASVYVASD-MLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSP 597 (914)
Q Consensus 555 ga~I~v~~~-~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~ 597 (914)
||+|.+.++ .--+..+++|+|+|++.+|+.|+.+|..++-+..
T Consensus 348 GA~~el~r~~p~~~~~ektf~IrG~~~QIdhAk~LIr~kvg~~~ 391 (600)
T KOG1676|consen 348 GARCELSRQPPNGNPKEKTFVIRGDKRQIDHAKQLIRDKVGDIA 391 (600)
T ss_pred CccccccCCCCCCCccceEEEEecCcccchHHHHHHHHHhcccC
Confidence 999999997 2225679999999999999999999999998853
No 3
>KOG2193|consensus
Probab=100.00 E-value=4.2e-40 Score=348.04 Aligned_cols=365 Identities=28% Similarity=0.385 Sum_probs=284.7
Q ss_pred cceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhccCCCCCCC
Q psy13906 78 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 157 (914)
Q Consensus 78 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~ 157 (914)
.+..+|++||..+||.||||.|++||.|.+.|-++|.|.+....+..|++|+|.++++.+.+|+++|++++.....++.
T Consensus 197 ~D~PlR~lVptqyvgaIIGkeG~TIknItkqTqsriD~hrken~Gaaek~itvh~tpEg~s~Ac~~ILeimqkEA~~~k- 275 (584)
T KOG2193|consen 197 KDWPLRLLVPTQYVGAIIGKEGATIKNITKQTQSRIDVHRKENAGAAEKIITVHSTPEGTSKACKMILEIMQKEAVDDK- 275 (584)
T ss_pred cCcceeeeeccceeEEEecCCCccccCcchhhhheeeeeecccCCcccCceEEecCccchHHHHHHHHHHHHHhhhccc-
Confidence 3678999999999999999999999999999999999999877789999999999999999999999999986422110
Q ss_pred CCCCCCCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhcccccCCCCCCCCC
Q psy13906 158 IPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQN 237 (914)
Q Consensus 158 ~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~ 237 (914)
T Consensus 276 -------------------------------------------------------------------------------- 275 (584)
T KOG2193|consen 276 -------------------------------------------------------------------------------- 275 (584)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCCccccccccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcC
Q psy13906 238 QNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGT 317 (914)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~ 317 (914)
..+++..+++..++++|++|||.|++|++|+++||++|+|.+-.+......+|+|+++|+
T Consensus 276 --------------------~~~e~pLk~lAHN~lvGRLIGKeGrnlKkIeq~TgTkITis~lqels~ynpERTItVkGs 335 (584)
T KOG2193|consen 276 --------------------VAEEIPLKILAHNNLVGRLIGKEGRNLKKIEQDTGTKITISKLQELSLYNPERTITVKGS 335 (584)
T ss_pred --------------------hhhhcchhhhhhcchhhhhhhhccccHHHHHhhcCCceeeeehhhhcccCccceEEeccc
Confidence 113456788899999999999999999999999999999998766666678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCcccccc
Q psy13906 318 PDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLS 397 (914)
Q Consensus 318 ~e~v~~A~~~I~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 397 (914)
.|+|..|+.+|...+++.- |.++..++-+-.+|+.. .+|.| +.+
T Consensus 336 iEac~~AE~eImkKlre~y---------EnDl~a~s~q~~l~P~l-------------~~~~l-------~~f------- 379 (584)
T KOG2193|consen 336 IEACVQAEAEIMKKLRECY---------ENDLAAMSLQCHLPPGL-------------NLPAL-------GLF------- 379 (584)
T ss_pred HHHHHHHHHHHHHHHHHHH---------hhhHHHhhccCCCCccc-------------Ccccc-------CCC-------
Confidence 9999999999998876532 23344443331111110 00100 000
Q ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeC
Q psy13906 398 ALGGLSDLLGGGSSGGGSGNSGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD 477 (914)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~ 477 (914)
.. .++. ..+.+.+.-+-...+|..+....+...++++||...||+|||++|.+||.|.+.+|++|+|..
T Consensus 380 ---------~s-sS~~-~~Ph~~Ps~v~~a~p~~~~hq~pe~e~V~~fiP~~~vGAiIGkkG~hIKql~RfagASiKIap 448 (584)
T KOG2193|consen 380 ---------PS-SSAV-SPPHFPPSPVTFASPYPLFHQNPEQEQVRMFIPAQAVGAIIGKKGQHIKQLSRFAGASIKIAP 448 (584)
T ss_pred ---------Cc-cccc-CCCCCCCCccccCCCchhhhcCcchhheeeeccHHHHHHHHhhcchhHHHHHHhccceeeecC
Confidence 00 0000 000111111111112322334457788999999999999999999999999999999999987
Q ss_pred C---CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhc
Q psy13906 478 S---STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETS 554 (914)
Q Consensus 478 ~---~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~t 554 (914)
+ +..+|.|+|+|++++..+|...|..+|+|..-... .+....+..+.||.+.+|+||||||.+++||+.-|
T Consensus 449 pE~pdvseRMViItGppeaqfKAQgrifgKikEenf~~P------keevklethirVPs~~aGRvIGKGGktVnELQnlt 522 (584)
T KOG2193|consen 449 PEIPDVSERMVIITGPPEAQFKAQGRIFGKIKEENFFLP------KEEVKLETHIRVPSSAAGRVIGKGGKTVNELQNLT 522 (584)
T ss_pred CCCCCcceeEEEecCChHHHHhhhhhhhhhhhhhccCCc------hhhheeeeeeeccchhhhhhhccccccHHHHhccc
Confidence 5 56789999999999999999999999987432111 12345677899999999999999999999999999
Q ss_pred CceEEEccCCCCCCCc-ceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 555 GASVYVASDMLPNSTE-REVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 555 ga~I~v~~~~~p~~~e-r~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
+|.|.|+.|..|+++| -+|.|.|..-+...|...|.+++.+.
T Consensus 523 ~AeV~vPrdqtpdEnd~vivriiGhfyatq~aQrki~~iv~qv 565 (584)
T KOG2193|consen 523 SAEVVVPRDQTPDENDQVIVRIIGHFYATQNAQRKIAHIVNQV 565 (584)
T ss_pred cceEEccccCCCCccceeeeeeechhhcchHHHHHHHHHHHHH
Confidence 9999999988787655 47889999999999999999999775
No 4
>KOG2192|consensus
Probab=100.00 E-value=8.4e-39 Score=320.46 Aligned_cols=326 Identities=33% Similarity=0.449 Sum_probs=246.3
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCC
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLG 517 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~ 517 (914)
..+.+|+|+.++.+|+||||+|++||+|+.+++++|+|++.++++|+++|+.+.+.|...++.|.-.+++....
T Consensus 46 ~r~e~ril~~sk~agavigkgg~nik~lr~d~na~v~vpds~~peri~tisad~~ti~~ilk~iip~lee~f~~------ 119 (390)
T KOG2192|consen 46 SRVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILTISADIETIGEILKKIIPTLEEGFQL------ 119 (390)
T ss_pred cceeEEEEEecccccceeccccccHHHHhhhccceeeccCCCCCceeEEEeccHHHHHHHHHHHhhhhhhCCCC------
Confidence 35789999999999999999999999999999999999999999999999999999999999888888875432
Q ss_pred CCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccCC
Q psy13906 518 GNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSP 597 (914)
Q Consensus 518 ~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~ 597 (914)
...++++|+|.+++.|.|||++|++||++++++.|++++..+++|.+++|+|.|.|.+.+|..|++.|+++|.|.|
T Consensus 120 ----~~pce~rllihqs~ag~iigrngskikelrekcsarlkift~c~p~stdrv~l~~g~~k~v~~~i~~il~~i~e~p 195 (390)
T KOG2192|consen 120 ----PSPCELRLLIHQSLAGGIIGRNGSKIKELREKCSARLKIFTECCPHSTDRVVLIGGKPKRVVECIKIILDLISESP 195 (390)
T ss_pred ----CCchhhhhhhhhhhccceecccchhHHHHHHhhhhhhhhhhccCCCCcceEEEecCCcchHHHHHHHHHHHhhcCC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCcccccCc-----CCCCCC---CCCC--c---cchhcccCCCCCCCCCCCCCCChHHH
Q psy13906 598 PKGATIPYRPLPQNAGGPGLIGNQFGMQNS-----LMGAPD---MGNN--P---LAGLAALGLGGNSGGGMGGGLNAAAL 664 (914)
Q Consensus 598 ~~~~~~py~P~~~~~~~~~~~g~~~~~q~s-----~~~~~~---~~~~--p---~~~~~~~~~~g~~~~~~~~g~~~~~~ 664 (914)
.|+...||.|..+... .-+|+ |+|... ....+. .+.. + +-.+...++.|..+..+...+...
T Consensus 196 ikgsa~py~p~fyd~t--~dygg-f~M~f~d~pg~pgpapqrggqgpp~~~~sdlmay~r~GrpG~rydg~vdFs~de-- 270 (390)
T KOG2192|consen 196 IKGSAQPYDPNFYDET--YDYGG-FTMMFDDRPGRPGPAPQRGGQGPPPPRGSDLMAYDRRGRPGDRYDGMVDFSADE-- 270 (390)
T ss_pred cCCcCCcCCccccCcc--cccCC-ceeecCCCCCCCCCCCCCCCCCCCCCCccccceeccCCCCCccccccccccccc--
Confidence 9999999999875432 22222 111100 000000 0000 0 001111222222222222222111
Q ss_pred HHhhhcccccCCCCCCCccccc----cCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEE
Q psy13906 665 AALASSQLKTNHMPRNQNQNQN----QHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMI 740 (914)
Q Consensus 665 ~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I 740 (914)
.+++.+.+++.+.++..... -...++....-++........+..|.||.++-|.||||+|++|++|++++||.|
T Consensus 271 --tw~saidtw~~SewqmaYePQgGs~ydysyAG~~GsYGdlGGPitTaQvtip~dlggsiigkggqri~~ir~esGA~I 348 (390)
T KOG2192|consen 271 --TWPSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGYGSYGDLGGPITTAQVTIPKDLGGSIIGKGGQRIKQIRHESGASI 348 (390)
T ss_pred --cCCCcCCCcCccccccccCCCCCCCCCccccccccccCCCCCceeeeeEecccccCcceecccchhhhhhhhccCceE
Confidence 22333334433333322222 222222222334555557788899999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhc
Q psy13906 741 RISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRAN 783 (914)
Q Consensus 741 ~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~ 783 (914)
+|+ ++.+++.+|+|||+||.+|++.|++|++..|+..+..
T Consensus 349 kid---epleGsedrIitItGTqdQIqnAQYLlQn~Vkq~rer 388 (390)
T KOG2192|consen 349 KID---EPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYRER 388 (390)
T ss_pred Eec---CcCCCCCceEEEEeccHHHHhhHHHHHHHHHHhhhcc
Confidence 999 5556889999999999999999999999999866543
No 5
>KOG2193|consensus
Probab=100.00 E-value=8.1e-38 Score=330.79 Aligned_cols=331 Identities=27% Similarity=0.417 Sum_probs=276.4
Q ss_pred cccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHh
Q psy13906 258 QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRA 337 (914)
Q Consensus 258 ~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~~ 337 (914)
.......+++||.+||+.|||++|.+|++|.+.|.|+|.|.+.++ .+..++.|+|.|++|++.+|+++|.+++...-.
T Consensus 195 q~~D~PlR~lVptqyvgaIIGkeG~TIknItkqTqsriD~hrken--~Gaaek~itvh~tpEg~s~Ac~~ILeimqkEA~ 272 (584)
T KOG2193|consen 195 QLKDWPLRLLVPTQYVGAIIGKEGATIKNITKQTQSRIDVHRKEN--AGAAEKIITVHSTPEGTSKACKMILEIMQKEAV 272 (584)
T ss_pred cccCcceeeeeccceeEEEecCCCccccCcchhhhheeeeeeccc--CCcccCceEEecCccchHHHHHHHHHHHHHhhh
Confidence 345678999999999999999999999999999999999998654 467899999999999999999999998864321
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCccccccccCCCcCCCCCCCCCCCCCC
Q psy13906 338 NLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLSALGGLSDLLGGGSSGGGSGN 417 (914)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (914)
+ +
T Consensus 273 --~--------------------------~-------------------------------------------------- 274 (584)
T KOG2193|consen 273 --D--------------------------D-------------------------------------------------- 274 (584)
T ss_pred --c--------------------------c--------------------------------------------------
Confidence 0 0
Q ss_pred CCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC-----CCCeeEEEEEcChh
Q psy13906 418 SGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS-----STPERIVTVIGSMD 492 (914)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~-----~~~ervv~I~G~~e 492 (914)
...+++.+|++.++..+|++|||.|.+||+|+++||++|.|+.- -++||.|+++|+.|
T Consensus 275 -----------------k~~~e~pLk~lAHN~lvGRLIGKeGrnlKkIeq~TgTkITis~lqels~ynpERTItVkGsiE 337 (584)
T KOG2193|consen 275 -----------------KVAEEIPLKILAHNNLVGRLIGKEGRNLKKIEQDTGTKITISKLQELSLYNPERTITVKGSIE 337 (584)
T ss_pred -----------------chhhhcchhhhhhcchhhhhhhhccccHHHHHhhcCCceeeeehhhhcccCccceEEecccHH
Confidence 00144677899999999999999999999999999999999863 47899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccc------c-----------cCCCC-----------------C-------CCcceEEEEEe
Q psy13906 493 SLFRAFSLITKNIEEFHKNQN------K-----------HLGGN-----------------G-------ESQLIQLRLIV 531 (914)
Q Consensus 493 ~V~~A~~~I~~~i~~~~~~~~------~-----------~~~~~-----------------~-------~~~~~~~~l~V 531 (914)
+|..|..+|+++++++.+..- . +++.. . ......++|.|
T Consensus 338 ac~~AE~eImkKlre~yEnDl~a~s~q~~l~P~l~~~~l~~f~ssS~~~~Ph~~Ps~v~~a~p~~~~hq~pe~e~V~~fi 417 (584)
T KOG2193|consen 338 ACVQAEAEIMKKLRECYENDLAAMSLQCHLPPGLNLPALGLFPSSSAVSPPHFPPSPVTFASPYPLFHQNPEQEQVRMFI 417 (584)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccCCCCcccCccccCCCCcccccCCCCCCCCccccCCCchhhhcCcchhheeeec
Confidence 999999999999998533210 0 00000 0 02446689999
Q ss_pred cCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q psy13906 532 PASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611 (914)
Q Consensus 532 P~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~~~~py~P~~~~ 611 (914)
|...+|.||||+|..||.|.+.+||.|+|.+...|+..+|+|+|+|++++..+|..+|..+|.|..+ +.|.
T Consensus 418 P~~~vGAiIGkkG~hIKql~RfagASiKIappE~pdvseRMViItGppeaqfKAQgrifgKikEenf------~~Pk--- 488 (584)
T KOG2193|consen 418 PAQAVGAIIGKKGQHIKQLSRFAGASIKIAPPEIPDVSERMVIITGPPEAQFKAQGRIFGKIKEENF------FLPK--- 488 (584)
T ss_pred cHHHHHHHHhhcchhHHHHHHhccceeeecCCCCCCcceeEEEecCChHHHHhhhhhhhhhhhhhcc------CCch---
Confidence 9999999999999999999999999999988778899999999999999999999999999988520 0000
Q ss_pred CCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhhhcccccCCCCCCCccccccCCCC
Q psy13906 612 AGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQNQNQHNRN 691 (914)
Q Consensus 612 ~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 691 (914)
T Consensus 489 -------------------------------------------------------------------------------- 488 (584)
T KOG2193|consen 489 -------------------------------------------------------------------------------- 488 (584)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHH
Q psy13906 692 NRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQY 771 (914)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~ 771 (914)
..-.+..+|.||...+|+||||||.++++|++.|+|.|.|+++..+ ++++.-+|.|.|..-+++.|+.
T Consensus 489 -----------eevklethirVPs~~aGRvIGKGGktVnELQnlt~AeV~vPrdqtp-dEnd~vivriiGhfyatq~aQr 556 (584)
T KOG2193|consen 489 -----------EEVKLETHIRVPSSAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTP-DENDQVIVRIIGHFYATQNAQR 556 (584)
T ss_pred -----------hhheeeeeeeccchhhhhhhccccccHHHHhccccceEEccccCCC-CccceeeeeeechhhcchHHHH
Confidence 1345677999999999999999999999999999999999986432 2234456899999999999999
Q ss_pred HHHHHHHHHHhcccC
Q psy13906 772 LINMSVELLRANLNG 786 (914)
Q Consensus 772 li~~~i~~~~~~~~~ 786 (914)
.|.+.|.+.+.....
T Consensus 557 ki~~iv~qvkq~~q~ 571 (584)
T KOG2193|consen 557 KIAHIVNQVKQSGQH 571 (584)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999988876555
No 6
>KOG2192|consensus
Probab=100.00 E-value=3e-33 Score=280.67 Aligned_cols=322 Identities=31% Similarity=0.428 Sum_probs=235.4
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcce
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI 80 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~ 80 (914)
|.|+.+|+||||+|+|||+|+.+.++.|.|+++++++|+++|+.+.+.|.+.++.|+-.+++.-. ..+.+
T Consensus 54 ~~sk~agavigkgg~nik~lr~d~na~v~vpds~~peri~tisad~~ti~~ilk~iip~lee~f~----------~~~pc 123 (390)
T KOG2192|consen 54 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILTISADIETIGEILKKIIPTLEEGFQ----------LPSPC 123 (390)
T ss_pred EecccccceeccccccHHHHhhhccceeeccCCCCCceeEEEeccHHHHHHHHHHHhhhhhhCCC----------CCCch
Confidence 46889999999999999999999999999999999999999999999999999999888876422 22368
Q ss_pred EEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhccCCCCCCCCCC
Q psy13906 81 QLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPY 160 (914)
Q Consensus 81 ~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~y 160 (914)
++||+|+++++|.|||++|+.||+++++|.+++.++.+++|.++||+|.+.|++.+|..+++.|+++|.+.+.++...||
T Consensus 124 e~rllihqs~ag~iigrngskikelrekcsarlkift~c~p~stdrv~l~~g~~k~v~~~i~~il~~i~e~pikgsa~py 203 (390)
T KOG2192|consen 124 ELRLLIHQSLAGGIIGRNGSKIKELREKCSARLKIFTECCPHSTDRVVLIGGKPKRVVECIKIILDLISESPIKGSAQPY 203 (390)
T ss_pred hhhhhhhhhhccceecccchhHHHHHHhhhhhhhhhhccCCCCcceEEEecCCcchHHHHHHHHHHHhhcCCcCCcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCccccCCcCCCC----C---CCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhc----ccccC
Q psy13906 161 RPLPQNAGGPGLIGNQFGMQNSLMGA----P---DMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALAS----SQLKT 229 (914)
Q Consensus 161 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~---~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~----s~~~~ 229 (914)
+|.. +++.+-+|..--+..+..+- | ..+.++-.+...|.+...+++++.+....-+.....+ ..|..
T Consensus 204 ~p~f--yd~t~dyggf~M~f~d~pg~pgpapqrggqgpp~~~~sdlmay~r~GrpG~rydg~vdFs~detw~saidtw~~ 281 (390)
T KOG2192|consen 204 DPNF--YDETYDYGGFTMMFDDRPGRPGPAPQRGGQGPPPPRGSDLMAYDRRGRPGDRYDGMVDFSADETWPSAIDTWSP 281 (390)
T ss_pred Cccc--cCcccccCCceeecCCCCCCCCCCCCCCCCCCCCCCccccceeccCCCCCccccccccccccccCCCcCCCcCc
Confidence 8876 45555555531122222221 1 1122222222233332222222222111001111111 11111
Q ss_pred -CCCCCCCCccccccCCCCCCCCCccccccccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCC
Q psy13906 230 -NHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSN 308 (914)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~ 308 (914)
.+-..+.|.-....+.+....-....+......+..+.||.++-+.|||++|..|++|++++|+.|+|..+ ..++.
T Consensus 282 SewqmaYePQgGs~ydysyAG~~GsYGdlGGPitTaQvtip~dlggsiigkggqri~~ir~esGA~Ikidep---leGse 358 (390)
T KOG2192|consen 282 SEWQMAYEPQGGSGYDYSYAGGYGSYGDLGGPITTAQVTIPKDLGGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 358 (390)
T ss_pred cccccccCCCCCCCCCccccccccccCCCCCceeeeeEecccccCcceecccchhhhhhhhccCceEEecCc---CCCCC
Confidence 12222223211111111111111111223445788999999999999999999999999999999999865 34778
Q ss_pred ceEEEEEcCHHHHHHHHHHHHHHHHHHHh
Q psy13906 309 DRTITMTGTPDAIALAQYLINMSVELLRA 337 (914)
Q Consensus 309 ~~~i~I~G~~e~v~~A~~~I~~~ve~~~~ 337 (914)
+++++|+|+.++++.|+.++...|++.+.
T Consensus 359 drIitItGTqdQIqnAQYLlQn~Vkq~re 387 (390)
T KOG2192|consen 359 DRIITITGTQDQIQNAQYLLQNSVKQYRE 387 (390)
T ss_pred ceEEEEeccHHHHhhHHHHHHHHHHhhhc
Confidence 99999999999999999999999987663
No 7
>KOG2190|consensus
Probab=100.00 E-value=5.6e-31 Score=300.11 Aligned_cols=333 Identities=38% Similarity=0.543 Sum_probs=221.8
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC--CCCeeEEEEEc---------ChhHHHHHHHHHHHHHH
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIG---------SMDSLFRAFSLITKNIE 506 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~--~~~ervv~I~G---------~~e~V~~A~~~I~~~i~ 506 (914)
...++|++|+..++|.||||+|.+|++|+.+|.++|+|.+. +|++|+++|+| ..+++.+|+.+|...++
T Consensus 41 ~t~~~RlL~~~kevG~IIGk~G~~vkkir~~t~s~i~i~~~~~~c~eRIiti~g~~~~~~~~~~~~al~ka~~~iv~~~~ 120 (485)
T KOG2190|consen 41 ETLTYRLLCHVKEVGSIIGKKGDIVKKIRKETESKIRVNESLPGCPERIITITGNRVELNLSPATDALFKAFDMIVFKLE 120 (485)
T ss_pred CcceEEEEeccccceeEEccCcHHHHHHhhcccccceeecCCCCCCcceEEEecccccccCCchHHHHHHHHHHHhhccc
Confidence 34559999999999999999999999999999988888765 89999999999 99999999999999877
Q ss_pred HhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHH
Q psy13906 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAI 586 (914)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~ 586 (914)
+..... ...+.......++++|+||.++||+||||+|++||+|+++|||+|++.++.+|.+++|.|+|.|.++.|.+|+
T Consensus 121 ~d~~~~-~d~~~~~~~~~v~~RLlVp~sq~GslIGK~G~~Ik~Ire~TgA~I~v~~~~lP~ster~V~IsG~~~av~~al 199 (485)
T KOG2190|consen 121 EDDEAA-EDNGEDASGPEVTCRLLVPSSQVGSLIGKGGSLIKEIREETGAKIRVSSDMLPNSTERAVTISGEPDAVKKAL 199 (485)
T ss_pred cccccc-ccCCccccCCceEEEEEechhheeeeeccCcHHHHHHHHhcCceEEecCCCCCcccceeEEEcCchHHHHHHH
Confidence 322111 1112122223589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC----C-CCCCCCCCCCCCCCCCCCcccCCc-ccccCcCCCCCCCCCCcc-----chhcccCCCCCCCCCC
Q psy13906 587 YQICLIMVDS----P-PKGATIPYRPLPQNAGGPGLIGNQ-FGMQNSLMGAPDMGNNPL-----AGLAALGLGGNSGGGM 655 (914)
Q Consensus 587 ~~I~~~l~e~----~-~~~~~~py~P~~~~~~~~~~~g~~-~~~q~s~~~~~~~~~~p~-----~~~~~~~~~g~~~~~~ 655 (914)
..|..+|.++ + ++..++||+|.....++....... +. .-+..+......... ......+..|.
T Consensus 200 ~~Is~~L~~~~~~~~~~~~st~~y~P~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~e~~~~~~~p~~~~~~v~g~----- 273 (485)
T KOG2190|consen 200 VQISSRLLENPPRSPPPLVSTIPYRPSASQGGPVLPSTAQTSP-DAHPFGGIVPEEELVFKLICPSDKVGSVIGK----- 273 (485)
T ss_pred HHHHHHHHhcCCcCCCCCCCcccCCCcccccCccccccccCCc-ccccccccccchhhhhhhcCchhhceeeecC-----
Confidence 9999999994 3 467799999933222222211110 10 000000000000000 00000000000
Q ss_pred CCCCChHHHHHhh-hcccc------------cCCCCCCCccccccCCCCCCCCCC----ccccccCCceEEEEEecCccc
Q psy13906 656 GGGLNAAALAALA-SSQLK------------TNHMPRNQNQNQNQHNRNNRDGPS----QKTNQQQNQITKEMTVPNELI 718 (914)
Q Consensus 656 ~~g~~~~~~~~~~-~s~~~------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~vp~~~~ 718 (914)
++.-...+-... .+... ....++... ++.+....+..+. ...+. ...++.++.||++++
T Consensus 274 -~~~~i~~l~~~~~~~i~v~~~~~~~~i~~s~~e~~~~~~--s~a~~a~~~~~~~~~~~~~~~~-~~~v~~~l~vps~~i 349 (485)
T KOG2190|consen 274 -GGLVIRALRNETGASISVGDSRTDRIVTISARENPEDRY--SMAQEALLLVQPRISENAGDDL-TQTVTQRLLVPSDLI 349 (485)
T ss_pred -CCccchhhhhhcCCceEeccccCcceeeeccccCccccc--ccchhhhhhccccccccccccc-cceeeeeeccCcccc
Confidence 000000000000 00000 000000000 0000000000000 00111 456889999999999
Q ss_pred cccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHh
Q psy13906 719 GAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRA 782 (914)
Q Consensus 719 g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~ 782 (914)
||||||+|.+|.+||+.|||.|+|.+..+. ....+++++|+|+..+...|+++|..+++..+.
T Consensus 350 gciiGk~G~~iseir~~tgA~I~I~~~~~~-~~~~e~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 412 (485)
T KOG2190|consen 350 GCIIGKGGAKISEIRQRTGASISILNKEEV-SGVREALVQITGMLREDLLAQYLIRARLSAPKS 412 (485)
T ss_pred ceeecccccchHHHHHhcCCceEEcccccc-CCcceeEEEecchhHHHHhhhhhcccccccCcc
Confidence 999999999999999999999999977532 256789999999999999999999777644443
No 8
>KOG2190|consensus
Probab=99.98 E-value=4.9e-31 Score=300.60 Aligned_cols=341 Identities=39% Similarity=0.576 Sum_probs=256.0
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCC--CCCceEEEEEc---------ChhHHHHHHHHHHHHHHHhhhhccc
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIG---------SMDSLFRAFSLITKNIEEFHKNQNK 69 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~--~~~ervV~I~G---------~~e~V~~A~~~I~~~l~~~~~~~~~ 69 (914)
+|.+++|.||||+|+.|++||++|.++|+|.+. ++++|+|+|+| ..+++.+|..+|...+++......+
T Consensus 49 ~~~kevG~IIGk~G~~vkkir~~t~s~i~i~~~~~~c~eRIiti~g~~~~~~~~~~~~al~ka~~~iv~~~~~d~~~~~d 128 (485)
T KOG2190|consen 49 CHVKEVGSIIGKKGDIVKKIRKETESKIRVNESLPGCPERIITITGNRVELNLSPATDALFKAFDMIVFKLEEDDEAAED 128 (485)
T ss_pred eccccceeEEccCcHHHHHHhhcccccceeecCCCCCCcceEEEecccccccCCchHHHHHHHHHHHhhccccccccccc
Confidence 477899999999999999999999999999775 89999999999 9999999999999988743332222
Q ss_pred cCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhc
Q psy13906 70 HLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMV 149 (914)
Q Consensus 70 ~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~ 149 (914)
.+.+.....+++||+||..++|.||||+|++||+|+++|||+|.+..+.+|.+++|.|+|.|++++|.+|+..|..+|.
T Consensus 129 -~~~~~~~~~v~~RLlVp~sq~GslIGK~G~~Ik~Ire~TgA~I~v~~~~lP~ster~V~IsG~~~av~~al~~Is~~L~ 207 (485)
T KOG2190|consen 129 -NGEDASGPEVTCRLLVPSSQVGSLIGKGGSLIKEIREETGAKIRVSSDMLPNSTERAVTISGEPDAVKKALVQISSRLL 207 (485)
T ss_pred -CCccccCCceEEEEEechhheeeeeccCcHHHHHHHHhcCceEEecCCCCCcccceeEEEcCchHHHHHHHHHHHHHHH
Confidence 1212222268999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-----CCCCCCCCCCCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhc
Q psy13906 150 DSPP-----KGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALAS 224 (914)
Q Consensus 150 ~~~~-----~~~~~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~ 224 (914)
++.. +..+++|+|...
T Consensus 208 ~~~~~~~~~~~st~~y~P~~~----------------------------------------------------------- 228 (485)
T KOG2190|consen 208 ENPPRSPPPLVSTIPYRPSAS----------------------------------------------------------- 228 (485)
T ss_pred hcCCcCCCCCCCcccCCCccc-----------------------------------------------------------
Confidence 8532 333344433100
Q ss_pred ccccCCCCCCCCCccccccCCCCCCCCCccccccccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCC
Q psy13906 225 SQLKTNHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEE 304 (914)
Q Consensus 225 s~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~ 304 (914)
.++-++...+.... ...
T Consensus 229 -----------------------------------------------~~~~~~~s~~~~~~----------~~~------ 245 (485)
T KOG2190|consen 229 -----------------------------------------------QGGPVLPSTAQTSP----------DAH------ 245 (485)
T ss_pred -----------------------------------------------ccCccccccccCCc----------ccc------
Confidence 00000000000000 000
Q ss_pred CCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhh
Q psy13906 305 EDSNDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQIL 384 (914)
Q Consensus 305 ~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~ 384 (914)
T Consensus 246 -------------------------------------------------------------------------------- 245 (485)
T KOG2190|consen 246 -------------------------------------------------------------------------------- 245 (485)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCccccccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHH
Q psy13906 385 TKPGALNALTSLSALGGLSDLLGGGSSGGGSGNSGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKK 464 (914)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~ 464 (914)
.+.....+.++.+++++|.+.++.|||++|..|+.
T Consensus 246 ---------------------------------------------~~~~~~~~~e~~~~~~~p~~~~~~v~g~~~~~i~~ 280 (485)
T KOG2190|consen 246 ---------------------------------------------PFGGIVPEEELVFKLICPSDKVGSVIGKGGLVIRA 280 (485)
T ss_pred ---------------------------------------------cccccccchhhhhhhcCchhhceeeecCCCccchh
Confidence 00001112455678999999999999999999999
Q ss_pred HHHHhCCeEEeeCCCCCeeEEEEEcC--hh-HHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeec
Q psy13906 465 LREESGSKIYISDSSTPERIVTVIGS--MD-SLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIG 541 (914)
Q Consensus 465 I~~etga~I~i~~~~~~ervv~I~G~--~e-~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIG 541 (914)
|+.++++.|.+.+.... +++++... ++ --..|...+........+.. +..+ ...++.+|+||.+++|+|||
T Consensus 281 l~~~~~~~i~v~~~~~~-~~i~~s~~e~~~~~~s~a~~a~~~~~~~~~~~~----~~~~-~~~v~~~l~vps~~igciiG 354 (485)
T KOG2190|consen 281 LRNETGASISVGDSRTD-RIVTISARENPEDRYSMAQEALLLVQPRISENA----GDDL-TQTVTQRLLVPSDLIGCIIG 354 (485)
T ss_pred hhhhcCCceEeccccCc-ceeeeccccCcccccccchhhhhhccccccccc----cccc-cceeeeeeccCccccceeec
Confidence 99999999999877555 88888764 22 22233333333322222111 1122 45789999999999999999
Q ss_pred cCCchHHHHHhhcCceEEEccCC-CCCCCcceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 542 KGGSQIKTIRETSGASVYVASDM-LPNSTEREVNIKGVPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 542 kgG~~IkeI~~~tga~I~v~~~~-~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e 595 (914)
|+|.+|.+|++.|||.|++.... ....+++.++|+|...+...+...+...+..
T Consensus 355 k~G~~iseir~~tgA~I~I~~~~~~~~~~e~~~~I~~~~~~~~~~~~~~~~~~~~ 409 (485)
T KOG2190|consen 355 KGGAKISEIRQRTGASISILNKEEVSGVREALVQITGMLREDLLAQYLIRARLSA 409 (485)
T ss_pred ccccchHHHHHhcCCceEEccccccCCcceeEEEecchhHHHHhhhhhccccccc
Confidence 99999999999999999998743 2367899999999999999999988666644
No 9
>KOG2191|consensus
Probab=99.92 E-value=3.1e-24 Score=222.58 Aligned_cols=267 Identities=27% Similarity=0.411 Sum_probs=205.2
Q ss_pred cceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC-----CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhccc
Q psy13906 439 QRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS-----STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQN 513 (914)
Q Consensus 439 ~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~-----~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~ 513 (914)
...+|||||+..+|.||||+|++|.+|+++|||+|++++. ++.||+|.|.|+.+++......|.++|++..+...
T Consensus 38 ~y~ikvLips~AaGsIIGKGG~ti~~lqk~tgariklSks~dfyPGTTeRvcli~Gt~eai~av~efI~dKire~p~~~~ 117 (402)
T KOG2191|consen 38 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGARIKLSKSKDFYPGTTERVCLIQGTVEALNAVHEFIADKIREKPQAVA 117 (402)
T ss_pred ceEEEEEeecccccceeccchHHHHHHHhccCcEEEeccccccCCCccceEEEEeccHHHHHHHHHHHHHHHHHhHHhhc
Confidence 4789999999999999999999999999999999999975 68899999999999999999999999998655433
Q ss_pred cc---CCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccC--CCCCCCcceEEEecCHHHHHHHHHH
Q psy13906 514 KH---LGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD--MLPNSTEREVNIKGVPDAVTQAIYQ 588 (914)
Q Consensus 514 ~~---~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~--~~p~~~er~V~I~G~~e~V~~A~~~ 588 (914)
.. +..-..++...++|+||++.+|.||||+|.+||.|++++||.|++++. ..-.-.||+|++.|++|+..+|+.+
T Consensus 118 k~v~~~~pqt~~r~kqikivvPNstag~iigkggAtiK~~~Eqsga~iqisPqkpt~~sLqervvt~sge~e~~~~A~~~ 197 (402)
T KOG2191|consen 118 KPVDILQPQTPDRIKQIKIVVPNSTAGMIIGKGGATIKAIQEQSGAWIQISPQKPTGISLQERVVTVSGEPEQNMKAVSL 197 (402)
T ss_pred CCccccCCCCccccceeEEeccCCcccceecCCcchHHHHHHhhCcceEecccCCCCccceeEEEEecCCHHHHHHHHHH
Confidence 31 112223445669999999999999999999999999999999999852 2234578999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhh
Q psy13906 589 ICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALA 668 (914)
Q Consensus 589 I~~~l~e~~~~~~~~py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 668 (914)
|++++.|+|..+..+. .+.....+ |++.+.+-|.++. +
T Consensus 198 IL~Ki~eDpqs~scln-~sya~vsG------------------------pvaNsnPtGspya---------~-------- 235 (402)
T KOG2191|consen 198 ILQKIQEDPQSGSCLN-ISYANVSG------------------------PVANSNPTGSPYA---------Y-------- 235 (402)
T ss_pred HHHHhhcCCcccceec-cchhcccC------------------------cccccCCCCCCCC---------C--------
Confidence 9999999976654332 11000000 1111111110000 0
Q ss_pred hcccccCCCCCCCccccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCC
Q psy13906 669 SSQLKTNHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEE 748 (914)
Q Consensus 669 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~ 748 (914)
..+...........|+...+|-.-|++|.++.+|...+|+.|.++..-+.
T Consensus 236 ------------------------------~~~~~~astas~~sva~~~iG~a~gaG~~~~a~l~~~~G~l~~itq~l~~ 285 (402)
T KOG2191|consen 236 ------------------------------QAHVLPASTASTISVAAGLIGGANGAGGAFGAALSGFTGALIAITQALNT 285 (402)
T ss_pred ------------------------------CCccccccchhhccccccccccccccccccceeeecccccceeecccccc
Confidence 00001223344678899999999999999999999999999999876654
Q ss_pred CCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 749 EEDSNDRTITMTGTPDAIALAQYLINMSVE 778 (914)
Q Consensus 749 ~~~~~~r~i~I~G~~~~v~~A~~li~~~i~ 778 (914)
..+..++ .-+.|-.-++..|..+|..++.
T Consensus 286 m~g~gy~-~n~~g~~ls~~aa~g~L~~~~~ 314 (402)
T KOG2191|consen 286 MAGYGYN-TNILGLGLSILAAEGVLAAKVA 314 (402)
T ss_pred ccccccc-ccccchhhhhhhhhhHHHHhhc
Confidence 5555666 7788999999999999887763
No 10
>KOG2191|consensus
Probab=99.89 E-value=7.2e-22 Score=205.09 Aligned_cols=260 Identities=26% Similarity=0.391 Sum_probs=197.8
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCC-----CCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCC--
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDS-----STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGG-- 73 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~-----~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~-- 73 (914)
||+-.+|.||||+|++|.+|+++|||+|+++.+ ++.||+|.|+|+.+++...+..|.+++++.....+...+.
T Consensus 45 ips~AaGsIIGKGG~ti~~lqk~tgariklSks~dfyPGTTeRvcli~Gt~eai~av~efI~dKire~p~~~~k~v~~~~ 124 (402)
T KOG2191|consen 45 IPSYAAGSIIGKGGQTIVQLQKETGARIKLSKSKDFYPGTTERVCLIQGTVEALNAVHEFIADKIREKPQAVAKPVDILQ 124 (402)
T ss_pred eecccccceeccchHHHHHHHhccCcEEEeccccccCCCccceEEEEeccHHHHHHHHHHHHHHHHHhHHhhcCCccccC
Confidence 688899999999999999999999999999875 7899999999999999999999999999988766542211
Q ss_pred -CCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEcc-C-CCCCCCCceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 74 -NGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS-D-MLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 150 (914)
Q Consensus 74 -~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~-~-~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 150 (914)
-..++...++++||+..+|.||||+|++||.|+++++|+|++.+ + ....-.||+|++.|++++..+|+++|++++.+
T Consensus 125 pqt~~r~kqikivvPNstag~iigkggAtiK~~~Eqsga~iqisPqkpt~~sLqervvt~sge~e~~~~A~~~IL~Ki~e 204 (402)
T KOG2191|consen 125 PQTPDRIKQIKIVVPNSTAGMIIGKGGATIKAIQEQSGAWIQISPQKPTGISLQERVVTVSGEPEQNMKAVSLILQKIQE 204 (402)
T ss_pred CCCccccceeEEeccCCcccceecCCcchHHHHHHhhCcceEecccCCCCccceeEEEEecCCHHHHHHHHHHHHHHhhc
Confidence 12344567999999999999999999999999999999999985 2 23346789999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhcccccCC
Q psy13906 151 SPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTN 230 (914)
Q Consensus 151 ~~~~~~~~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~s~~~~~ 230 (914)
.++...++. .+..+.+.++... .| .+.+
T Consensus 205 Dpqs~scln-~sya~vsGpvaNs------------------nP---------------tGsp------------------ 232 (402)
T KOG2191|consen 205 DPQSGSCLN-ISYANVSGPVANS------------------NP---------------TGSP------------------ 232 (402)
T ss_pred CCcccceec-cchhcccCccccc------------------CC---------------CCCC------------------
Confidence 877765542 2222211111000 00 0000
Q ss_pred CCCCCCCccccccCCCCCCCCCccccc-cccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCc
Q psy13906 231 HMPRNQNQNQNQHNRNNRDGPSQKTNQ-QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSND 309 (914)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~ 309 (914)
...... ..........++....|..-|.+|.+...|-.-+|..+.+...-+...+..+
T Consensus 233 ---------------------ya~~~~~~~astas~~sva~~~iG~a~gaG~~~~a~l~~~~G~l~~itq~l~~m~g~gy 291 (402)
T KOG2191|consen 233 ---------------------YAYQAHVLPASTASTISVAAGLIGGANGAGGAFGAALSGFTGALIAITQALNTMAGYGY 291 (402)
T ss_pred ---------------------CCCCCccccccchhhccccccccccccccccccceeeecccccceeecccccccccccc
Confidence 000000 0001133455788888999999999999999999999999876554555566
Q ss_pred eEEEEEcCHHHHHHHHHHHHHHHHH
Q psy13906 310 RTITMTGTPDAIALAQYLINMSVEL 334 (914)
Q Consensus 310 ~~i~I~G~~e~v~~A~~~I~~~ve~ 334 (914)
+ ..+.|..-.+..|..+|...+..
T Consensus 292 ~-~n~~g~~ls~~aa~g~L~~~~~~ 315 (402)
T KOG2191|consen 292 N-TNILGLGLSILAAEGVLAAKVAS 315 (402)
T ss_pred c-ccccchhhhhhhhhhHHHHhhcc
Confidence 6 77888888999998888877653
No 11
>KOG2208|consensus
Probab=99.79 E-value=2.6e-19 Score=215.94 Aligned_cols=325 Identities=22% Similarity=0.270 Sum_probs=255.2
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcce
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI 80 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~ 80 (914)
|.+..+..++||+|.+|.+|+++++|.|.++..+..+..+++++..+++++|...+...+.+.... ..
T Consensus 353 i~~~~~~~v~GK~~~ni~ki~e~~~~~i~~~~~~~~~~~v~~~~~~~~~~ka~~~v~~~~~ei~n~------------~~ 420 (753)
T KOG2208|consen 353 IFPEELKFVIGKKGANIEKIREESQVKIDLPKQGSNNKKVVITGVSANDEKAVEDVEKIIAEILNS------------IV 420 (753)
T ss_pred ecHHhhhhhcCCCCccHHHHHHhhhhceecccccCCCCCeEEeccccchhHHHHHHHHHHHhhhcc------------cc
Confidence 345678899999999999999999999999998888999999999999999999999998887542 34
Q ss_pred EEEEEeeccccceeeccCchhHHHHHhhcC-cEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhccCCCCCCCCC
Q psy13906 81 QLRLIVPASQCGSIIGKGGSQIKTIRETSG-ASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIP 159 (914)
Q Consensus 81 ~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sg-a~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~ 159 (914)
...+.+|+..+.++||.+|..|++|+++++ ..|.+..+ ......+++.|....+..++.++..+..+.....
T Consensus 421 ~~~~~iP~k~~~~iig~~g~~i~~I~~k~~~v~i~f~~~---~~~~~~~~~~~~~~dv~~~~~~~~~~~~~a~~~~---- 493 (753)
T KOG2208|consen 421 KEEVQIPTKSHKRIIGTKGALINYIMGKHGGVHIKFQNN---NNSSDMVTIRGISKDVEKSVSLLKALKADAKNLK---- 493 (753)
T ss_pred cceeecCccchhhhhccccccHHHHHhhcCcEEEecCCC---CcccccceEeccccccchhHHHHHhhhhhhhcch----
Confidence 567999999999999999999999999999 66666542 4455667888888888887777666554321100
Q ss_pred CCCCCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhcccccCCCCCCCCCcc
Q psy13906 160 YRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQN 239 (914)
Q Consensus 160 y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~~ 239 (914)
T Consensus 494 -------------------------------------------------------------------------------- 493 (753)
T KOG2208|consen 494 -------------------------------------------------------------------------------- 493 (753)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCccccccccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHH
Q psy13906 240 QNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPD 319 (914)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e 319 (914)
.....+.+...|..+.+..+|+.|..+..+.++....+..+ .++..++|.|..+
T Consensus 494 ------------------~~~~~~~d~~~~~~~~~~~~g~~~~i~d~~~~~~i~~~~~~--------~~~~~i~i~gk~~ 547 (753)
T KOG2208|consen 494 ------------------FRDVVTKDKLLPVKYIGKEIGKNGTIRDSLGDKSIFPPNED--------EDHEKITIEGKLE 547 (753)
T ss_pred ------------------hhhhhhccccchHHhhcccccCceeeeccCCceeecccccc--------cccceeeeccccc
Confidence 01112456667777887778877777766666665544443 3568999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCcccccccc
Q psy13906 320 AIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLSAL 399 (914)
Q Consensus 320 ~v~~A~~~I~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 399 (914)
.|..|.+++..+++.+......
T Consensus 548 ~v~~a~~~L~~~~~~~~~~~~~---------------------------------------------------------- 569 (753)
T KOG2208|consen 548 LVLEAPAELKALIEALIKATLL---------------------------------------------------------- 569 (753)
T ss_pred chhhhHHHHHhcchhhhhhhhh----------------------------------------------------------
Confidence 9999999998877654321110
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCC
Q psy13906 400 GGLSDLLGGGSSGGGSGNSGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSS 479 (914)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~ 479 (914)
....-|....-.+++++....+..+...|+.+.+++..
T Consensus 570 ------------------------------------------~v~~~~~~~~~~l~~~~~~~~~~~e~~~gv~~~fp~~~ 607 (753)
T KOG2208|consen 570 ------------------------------------------EVNNPPGQHRPFLIGKGIENRTYVEVFGGVVVPFPRSP 607 (753)
T ss_pred ------------------------------------------hccCcchheeeeeeccccccccceeecCcccccCCCCC
Confidence 00111234455788888888888888888999999888
Q ss_pred CCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEE
Q psy13906 480 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVY 559 (914)
Q Consensus 480 ~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~ 559 (914)
+..+.++|.|..+.++.|...+.++++.+.. ..+.++.+|...|..+.|.+|..+++++..+++.+.
T Consensus 608 ~~~~e~~i~g~~~~v~aa~~~~~~i~~~~~~-------------~~~~~~~i~~~~~~~~~~~~g~~~~~~t~~~~~~~~ 674 (753)
T KOG2208|consen 608 TSSDEVSIKGAKDEVKAAKGRLEEIVEYLSA-------------YATTNTKIPDKFHRSIVGYRGHIIEEITSKFGVGGY 674 (753)
T ss_pred CchhhhccchhHHHHHHhhccchhhhhhccc-------------ccceeeecccccceeeecCCCcccccceeecCccce
Confidence 8888999999999999999999999987643 456669999999999999999999999999999999
Q ss_pred EccC
Q psy13906 560 VASD 563 (914)
Q Consensus 560 v~~~ 563 (914)
+...
T Consensus 675 ~~~~ 678 (753)
T KOG2208|consen 675 FGDA 678 (753)
T ss_pred eCCC
Confidence 8764
No 12
>KOG2208|consensus
Probab=99.64 E-value=3.8e-16 Score=188.70 Aligned_cols=432 Identities=19% Similarity=0.237 Sum_probs=323.7
Q ss_pred CcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 3 GKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 3 s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
...+..+||++|.+++.++.++.+.|+|+.+........|.+....+..+...|.+.+...+. ...+
T Consensus 209 ~~~~~~~~g~g~~~~~~~~d~~~~~i~ip~sn~~~~~~~i~~~~~~~~~~~~~i~~~~~~le~-------------~~~~ 275 (753)
T KOG2208|consen 209 ITLHSHIIGRGGSNISIIMDETKVHIHIPDSNKSSPSNKIDGRLNSSSSINVEIQEALTRLES-------------EFDY 275 (753)
T ss_pred ccchhhhccccccccccccccceeEEEcccccccchhhhhccccccceehhhhhHHHHHHhcC-------------hhhh
Confidence 456788999999999999999999999998877788888889888888888888888776655 3445
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~y~~ 162 (914)
.+.++..++-.++|..|..|+.|+...--...+... +.+.+..+.++|....+..+......++....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 343 (753)
T KOG2208|consen 276 DEIIYRRLPRFIRGIPGEEINQLRDYMPEVDSIFQN--YPSKDDSIVLSGFEVGAVLAKRDKTLLLKNSE---------- 343 (753)
T ss_pred hhhhhccccccccccccchhhHHHhhcchhhhhhcc--ccccceeEeecccccchhhhhhHHHHHHHHhh----------
Confidence 678888899999999999999999877655545432 34667788999998877776555444332210
Q ss_pred CCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhcccccCCCCCCCCCccccc
Q psy13906 163 LPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQNQNQ 242 (914)
Q Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 242 (914)
T Consensus 344 -------------------------------------------------------------------------------- 343 (753)
T KOG2208|consen 344 -------------------------------------------------------------------------------- 343 (753)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccccccccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHH
Q psy13906 243 HNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIA 322 (914)
Q Consensus 243 ~~~~~~~~p~~~~~~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~ 322 (914)
...+...+.|-+.++.+++|++|.+|.+|++++.|.|.++.. +..+..+.++|...+++
T Consensus 344 ----------------~nn~~i~~~i~~~~~~~v~GK~~~ni~ki~e~~~~~i~~~~~-----~~~~~~v~~~~~~~~~~ 402 (753)
T KOG2208|consen 344 ----------------ENNENIKREIFPEELKFVIGKKGANIEKIREESQVKIDLPKQ-----GSNNKKVVITGVSANDE 402 (753)
T ss_pred ----------------ccceeeEEeecHHhhhhhcCCCCccHHHHHHhhhhceecccc-----cCCCCCeEEeccccchh
Confidence 011367788999999999999999999999999999999863 34778999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCccccccccCCC
Q psy13906 323 LAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLSALGGL 402 (914)
Q Consensus 323 ~A~~~I~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 402 (914)
+|...++..+.++...
T Consensus 403 ka~~~v~~~~~ei~n~---------------------------------------------------------------- 418 (753)
T KOG2208|consen 403 KAVEDVEKIIAEILNS---------------------------------------------------------------- 418 (753)
T ss_pred HHHHHHHHHHHhhhcc----------------------------------------------------------------
Confidence 9999998776543310
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhC-CeEEeeCCCCC
Q psy13906 403 SDLLGGGSSGGGSGNSGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESG-SKIYISDSSTP 481 (914)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etg-a~I~i~~~~~~ 481 (914)
.+...+++|...+..+||.+|..|..|.++++ +.|++......
T Consensus 419 ------------------------------------~~~~~~~iP~k~~~~iig~~g~~i~~I~~k~~~v~i~f~~~~~~ 462 (753)
T KOG2208|consen 419 ------------------------------------IVKEEVQIPTKSHKRIIGTKGALINYIMGKHGGVHIKFQNNNNS 462 (753)
T ss_pred ------------------------------------cccceeecCccchhhhhccccccHHHHHhhcCcEEEecCCCCcc
Confidence 12335788999999999999999999999999 78888777666
Q ss_pred eeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 482 ERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 482 ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
...+++.|....+..+...+............ -...+...+.|..+.+..+|+.|.. ++..+...-++
T Consensus 463 ~~~~~~~~~~~dv~~~~~~~~~~~~~a~~~~~--------~~~~~~d~~~~~~~~~~~~g~~~~i----~d~~~~~~i~~ 530 (753)
T KOG2208|consen 463 SDMVTIRGISKDVEKSVSLLKALKADAKNLKF--------RDVVTKDKLLPVKYIGKEIGKNGTI----RDSLGDKSIFP 530 (753)
T ss_pred cccceEeccccccchhHHHHHhhhhhhhcchh--------hhhhhccccchHHhhcccccCceee----eccCCceeecc
Confidence 67788888888888766665555443222111 1234556677777777777777765 44455545544
Q ss_pred cCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccch
Q psy13906 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAG 641 (914)
Q Consensus 562 ~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~~~~py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~ 641 (914)
.+. +.++..++|.|..+.|.+|...+..++.....
T Consensus 531 ~~~--~~~~~~i~i~gk~~~v~~a~~~L~~~~~~~~~------------------------------------------- 565 (753)
T KOG2208|consen 531 PNE--DEDHEKITIEGKLELVLEAPAELKALIEALIK------------------------------------------- 565 (753)
T ss_pred ccc--ccccceeeecccccchhhhHHHHHhcchhhhh-------------------------------------------
Confidence 421 34567899999999999999999887755310
Q ss_pred hcccCCCCCCCCCCCCCCChHHHHHhhhcccccCCCCCCCccccccCCCCCCCCCCccccccCCceEEEEEecC-ccccc
Q psy13906 642 LAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPN-ELIGA 720 (914)
Q Consensus 642 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~-~~~g~ 720 (914)
.....+.+|. ...-+
T Consensus 566 ----------------------------------------------------------------~~~~~v~~~~~~~~~~ 581 (753)
T KOG2208|consen 566 ----------------------------------------------------------------ATLLEVNNPPGQHRPF 581 (753)
T ss_pred ----------------------------------------------------------------hhhhhccCcchheeee
Confidence 0011233333 34467
Q ss_pred cccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhcccC
Q psy13906 721 VIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRANLNG 786 (914)
Q Consensus 721 iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~~~~ 786 (914)
+++++....+..+...|..+.+++.. +..+.++|.|....++.|+..+...++.+......
T Consensus 582 l~~~~~~~~~~~e~~~gv~~~fp~~~-----~~~~e~~i~g~~~~v~aa~~~~~~i~~~~~~~~~~ 642 (753)
T KOG2208|consen 582 LIGKGIENRTYVEVFGGVVVPFPRSP-----TSSDEVSIKGAKDEVKAAKGRLEEIVEYLSAYATT 642 (753)
T ss_pred eeccccccccceeecCcccccCCCCC-----CchhhhccchhHHHHHHhhccchhhhhhcccccce
Confidence 77888888877788888899998753 34567999999999999999999999877665443
No 13
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=99.52 E-value=5.3e-14 Score=141.68 Aligned_cols=139 Identities=26% Similarity=0.364 Sum_probs=110.0
Q ss_pred cccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEE---EcChhHHHHHHHHHHHHHHHhhhcccccCCCCC
Q psy13906 444 HIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTV---IGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNG 520 (914)
Q Consensus 444 i~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I---~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~ 520 (914)
+.||.+.+|.|||++|++|+.|+++||++|++.+.. ..|.| +++++++.+|+..|..+...+.-...... .+
T Consensus 2 i~Ip~~kig~vIG~gG~~Ik~I~~~tgv~I~Id~~~---g~V~I~~~t~d~~~i~kA~~~I~~i~~gf~~e~A~~l--~g 76 (172)
T TIGR03665 2 VKIPKDRIGVLIGKGGETKKEIEERTGVKLDIDSET---GEVKIEEEDEDPLAVMKAREVVKAIGRGFSPEKALKL--LD 76 (172)
T ss_pred ccCCHHHhhhHhCCchhHHHHHHHHhCcEEEEEcCC---ceEEEecCCCCHHHHHHHHHHHHHHHcCCCHHHHHHh--cC
Confidence 568999999999999999999999999999998642 45777 78999999999999987764321100000 00
Q ss_pred CCcceEE-EEEecC---------CccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHH
Q psy13906 521 ESQLIQL-RLIVPA---------SQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQIC 590 (914)
Q Consensus 521 ~~~~~~~-~l~VP~---------~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~ 590 (914)
..++. -+.|+. ..+|+|||++|++++.|++.|||+|.+.. +.|.|.|++++++.|+..|+
T Consensus 77 --d~y~~~Vi~I~~~~~~~~~~~~~~griIG~~G~t~~~ie~~t~~~i~i~~--------~~v~i~G~~~~~~~A~~~i~ 146 (172)
T TIGR03665 77 --DDYMLEVIDLKEYGKSPNALRRIKGRIIGEGGKTRRIIEELTGVSISVYG--------KTVGIIGDPEQVQIAREAIE 146 (172)
T ss_pred --CcceEEEEEhhhccCCHHHHHHHHhhhcCCCcHHHHHHHHHHCCeEEEcC--------CEEEEECCHHHHHHHHHHHH
Confidence 11122 234443 47899999999999999999999999874 67999999999999999999
Q ss_pred HHhccCC
Q psy13906 591 LIMVDSP 597 (914)
Q Consensus 591 ~~l~e~~ 597 (914)
+++.+.+
T Consensus 147 ~li~~~~ 153 (172)
T TIGR03665 147 MLIEGAP 153 (172)
T ss_pred HHHcCCC
Confidence 9997763
No 14
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=99.51 E-value=9.7e-14 Score=139.83 Aligned_cols=137 Identities=24% Similarity=0.341 Sum_probs=107.5
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEE---EcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCC
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTV---IGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGES 77 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I---~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~ 77 (914)
||.+++|.|||++|++|++|+++|+|+|.+.++ +..|.| +++++++.+|+.+|..+........... ...+
T Consensus 4 Ip~~kig~vIG~gG~~Ik~I~~~tgv~I~Id~~---~g~V~I~~~t~d~~~i~kA~~~I~~i~~gf~~e~A~~---l~gd 77 (172)
T TIGR03665 4 IPKDRIGVLIGKGGETKKEIEERTGVKLDIDSE---TGEVKIEEEDEDPLAVMKAREVVKAIGRGFSPEKALK---LLDD 77 (172)
T ss_pred CCHHHhhhHhCCchhHHHHHHHHhCcEEEEEcC---CceEEEecCCCCHHHHHHHHHHHHHHHcCCCHHHHHH---hcCC
Confidence 688999999999999999999999999999873 356777 7889999999999999776322110000 0001
Q ss_pred cceEEEEEeec---------cccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHh
Q psy13906 78 QLIQLRLIVPA---------SQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIM 148 (914)
Q Consensus 78 ~~~~~~l~Vp~---------~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l 148 (914)
.....-+.|+. ...|+|||++|.+++.|+..|||+|.+. ++.|.|.|.+++++.|.+.|.+++
T Consensus 78 ~y~~~Vi~I~~~~~~~~~~~~~~griIG~~G~t~~~ie~~t~~~i~i~--------~~~v~i~G~~~~~~~A~~~i~~li 149 (172)
T TIGR03665 78 DYMLEVIDLKEYGKSPNALRRIKGRIIGEGGKTRRIIEELTGVSISVY--------GKTVGIIGDPEQVQIAREAIEMLI 149 (172)
T ss_pred cceEEEEEhhhccCCHHHHHHHHhhhcCCCcHHHHHHHHHHCCeEEEc--------CCEEEEECCHHHHHHHHHHHHHHH
Confidence 11112234443 3689999999999999999999999996 368999999999999999999999
Q ss_pred ccC
Q psy13906 149 VDS 151 (914)
Q Consensus 149 ~~~ 151 (914)
.+.
T Consensus 150 ~~~ 152 (172)
T TIGR03665 150 EGA 152 (172)
T ss_pred cCC
Confidence 655
No 15
>PRK13763 putative RNA-processing protein; Provisional
Probab=99.48 E-value=2.5e-13 Score=137.82 Aligned_cols=143 Identities=24% Similarity=0.332 Sum_probs=111.1
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEE----cChhHHHHHHHHHHHHHHHhhhccccc
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI----GSMDSLFRAFSLITKNIEEFHKNQNKH 515 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~----G~~e~V~~A~~~I~~~i~~~~~~~~~~ 515 (914)
....+.||.+.++.|||++|++|+.|+++|||+|++.+. +..|.|. ++++++++|+..|..++..+.......
T Consensus 3 ~~~~i~IP~~kig~iIG~gGk~Ik~I~e~tg~~I~i~~~---~g~V~I~~~~~~d~~~i~kA~~~I~ai~~gf~~e~A~~ 79 (180)
T PRK13763 3 MMEYVKIPKDRIGVLIGKKGETKKEIEERTGVKLEIDSE---TGEVIIEPTDGEDPLAVLKARDIVKAIGRGFSPEKALR 79 (180)
T ss_pred ceEEEEcCHHHhhhHhccchhHHHHHHHHHCcEEEEECC---CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 356788999999999999999999999999999999864 2457774 899999999999999887422110000
Q ss_pred CCCCCCCcceEEEE-Eec---------CCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHH
Q psy13906 516 LGGNGESQLIQLRL-IVP---------ASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585 (914)
Q Consensus 516 ~~~~~~~~~~~~~l-~VP---------~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A 585 (914)
.- + ..+..++ .|. ...+|+|||++|++++.|++.|||+|.|.. +.|.|.|++++++.|
T Consensus 80 l~--g--d~y~~~Vi~i~~~~~~~~~~~r~~griIG~~G~~~k~ie~~t~~~i~i~~--------~~v~i~G~~~~~~~A 147 (180)
T PRK13763 80 LL--D--DDYVLEVIDLSDYGDSPNALRRIKGRIIGEGGKTRRIIEELTGVDISVYG--------KTVAIIGDPEQVEIA 147 (180)
T ss_pred Hh--C--CCceEEEEEhhhccCChhHHHHHhhheeCCCcHHHHHHHHHHCcEEEEcC--------CEEEEEeCHHHHHHH
Confidence 00 0 0112221 111 147899999999999999999999999975 359999999999999
Q ss_pred HHHHHHHhccCC
Q psy13906 586 IYQICLIMVDSP 597 (914)
Q Consensus 586 ~~~I~~~l~e~~ 597 (914)
...|+.++...+
T Consensus 148 ~~~I~~li~g~~ 159 (180)
T PRK13763 148 REAIEMLIEGAP 159 (180)
T ss_pred HHHHHHHHcCCC
Confidence 999999996653
No 16
>PRK13763 putative RNA-processing protein; Provisional
Probab=99.47 E-value=3.3e-13 Score=136.85 Aligned_cols=131 Identities=25% Similarity=0.376 Sum_probs=105.6
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEE----cChhHHHHHHHHHHHHHHHhhhh-----ccccC
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI----GSMDSLFRAFSLITKNIEEFHKN-----QNKHL 71 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~----G~~e~V~~A~~~I~~~l~~~~~~-----~~~~~ 71 (914)
||.++++.|||++|++|+.|+++|||+|++.+. +..|.|. ++++.+++|+.+|.+++...... ..+
T Consensus 9 IP~~kig~iIG~gGk~Ik~I~e~tg~~I~i~~~---~g~V~I~~~~~~d~~~i~kA~~~I~ai~~gf~~e~A~~l~gd-- 83 (180)
T PRK13763 9 IPKDRIGVLIGKKGETKKEIEERTGVKLEIDSE---TGEVIIEPTDGEDPLAVLKARDIVKAIGRGFSPEKALRLLDD-- 83 (180)
T ss_pred cCHHHhhhHhccchhHHHHHHHHHCcEEEEECC---CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHhCC--
Confidence 688999999999999999999999999999873 4577775 88999999999999988732211 111
Q ss_pred CCCCCCcceEEE-EEee---------ccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHH
Q psy13906 72 GGNGESQLIQLR-LIVP---------ASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAI 141 (914)
Q Consensus 72 ~~~~~~~~~~~~-l~Vp---------~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~ 141 (914)
.+... +.+. ...+|+|||++|.+++.|++.|||+|.|.. +.|.|.|++++++.|.
T Consensus 84 -------~y~~~Vi~i~~~~~~~~~~~r~~griIG~~G~~~k~ie~~t~~~i~i~~--------~~v~i~G~~~~~~~A~ 148 (180)
T PRK13763 84 -------DYVLEVIDLSDYGDSPNALRRIKGRIIGEGGKTRRIIEELTGVDISVYG--------KTVAIIGDPEQVEIAR 148 (180)
T ss_pred -------CceEEEEEhhhccCChhHHHHHhhheeCCCcHHHHHHHHHHCcEEEEcC--------CEEEEEeCHHHHHHHH
Confidence 11111 1111 136899999999999999999999999963 4599999999999999
Q ss_pred HHHHHHhccC
Q psy13906 142 YQICLIMVDS 151 (914)
Q Consensus 142 ~~I~~~l~~~ 151 (914)
..|.+++...
T Consensus 149 ~~I~~li~g~ 158 (180)
T PRK13763 149 EAIEMLIEGA 158 (180)
T ss_pred HHHHHHHcCC
Confidence 9999999655
No 17
>KOG2279|consensus
Probab=99.24 E-value=2.4e-11 Score=135.34 Aligned_cols=292 Identities=21% Similarity=0.230 Sum_probs=190.4
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC-CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccC
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS-STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHL 516 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~-~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~ 516 (914)
.++.+++.|+...|-.++|+.|.+|+.|+..|+++|.+.+. ..+++...+.|-+.++.+|...+..++.+.
T Consensus 66 k~v~~e~Vv~~e~vkli~gr~gsnik~l~~~t~aKi~L~~ed~g~e~~~~~~~~p~~v~~a~a~~~~~~~~~-------- 137 (608)
T KOG2279|consen 66 KDIEIEMVVPQEAVKLIIGRQGSNIKQLRKQTGAKIDLDTEDVGDERVLLISGFPVQVCKAKAAIHQILTEN-------- 137 (608)
T ss_pred hheeeeEeecccceeeeeccccCCcchhhcccccceecCcccCCcccchhhccCCCCCChHHHHHHHHHhcC--------
Confidence 56788889999999999999999999999999999999866 456777777889999999999999988753
Q ss_pred CCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 517 GGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 517 ~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
..+...+.+|...+++|+|++|++++.|+.-++++|.+..+. -..-.+...|.+....+..|..++.+.+.++
T Consensus 138 ------~pvk~~lsvpqr~~~~i~grgget~~si~~ss~aki~~d~ng-r~g~~~~~~i~~qqk~~~~a~~~~~~~~~ed 210 (608)
T KOG2279|consen 138 ------TPVSEQLSVPQRSVGRIIGRGGETIRSICKSSGAKITCDKNG-RLGLSRLIKISGQQKEVAAAKHLILEKVSED 210 (608)
T ss_pred ------Ccccccccchhhhcccccccchhhhcchhccccccccccccc-ccccccceecccccchHHHHHhhhhccccch
Confidence 367888999999999999999999999999999999988762 3445678889898888889999988877664
Q ss_pred CC-------CCCCCCCCCCCCCCCCCcccCCc-ccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhh
Q psy13906 597 PP-------KGATIPYRPLPQNAGGPGLIGNQ-FGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALA 668 (914)
Q Consensus 597 ~~-------~~~~~py~P~~~~~~~~~~~g~~-~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 668 (914)
-. .....+-++.|-+. ++.. +..+ ..+.++ ...+.....+.+.++.. ..++.. ....+..
T Consensus 211 eelv~~~~e~~q~rvprk~p~n~-----~~~~m~~~~--~s~~~h-~~~~t~~s~spg~~~~~---~eg~dm-~v~vsk~ 278 (608)
T KOG2279|consen 211 EELVKRIAESAQTRVPRKQPINV-----RREDMTEPG--GAGEPH-LWKNTSSSMSPGAPLVT---KEGGDM-AVVVSKE 278 (608)
T ss_pred hHHhhhchhhcccCCCCCCCccc-----cchhhcccc--cCCccc-cCccchhccCCCCCCcc---cCCCcc-eeEEecc
Confidence 21 11111111111110 0000 0000 000000 00000001111111110 000000 0000000
Q ss_pred hcccccCCCCCCCccccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCC
Q psy13906 669 SSQLKTNHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEE 748 (914)
Q Consensus 669 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~ 748 (914)
+++. + ..++. ..........+|+||.-.+|.+||..|..|..+...|++.+.|-..+..
T Consensus 279 ~s~~-----~-------------~~d~s---~~k~~~l~i~e~e~p~~lsg~lig~~gey~s~yssasn~~~hi~t~pyt 337 (608)
T KOG2279|consen 279 GSWE-----K-------------PSDDS---FQKSEALAIPEMEMPEILSGDLIGHAGEYLSVYSSASNHPNHIWTQPYT 337 (608)
T ss_pred cccC-----C-------------ccccc---cccccccccceeecCcccccchhhhhhhhhhhhhhccCccceEEecccc
Confidence 0000 0 00000 0011345567999999999999999999999999999999999765431
Q ss_pred CCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 749 EEDSNDRTITMTGTPDAIALAQYLINMSV 777 (914)
Q Consensus 749 ~~~~~~r~i~I~G~~~~v~~A~~li~~~i 777 (914)
..--.-.++.+.|+..-+..+-.|+...+
T Consensus 338 ~~v~~~qic~~egkqh~~n~vl~ml~~~~ 366 (608)
T KOG2279|consen 338 SRVLQLQICVNEGKQHYENSVLEMLTVHV 366 (608)
T ss_pred chhhhhhhheecchhHHHHHHHhhhhccC
Confidence 00001256889999999999988887443
No 18
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
Probab=99.22 E-value=2.5e-11 Score=102.30 Aligned_cols=63 Identities=44% Similarity=0.694 Sum_probs=57.7
Q ss_pred EEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHH
Q psy13906 709 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLI 773 (914)
Q Consensus 709 ~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li 773 (914)
.+|.||.+.+|+|||++|++|++|++.|||+|.|.+..+ ++..+|.|+|+|++++++.|..||
T Consensus 2 ~r~~ip~~~vg~iIG~~G~~i~~i~~~tga~I~i~~~~~--~~~~~r~v~I~G~~~~v~~A~~~I 64 (65)
T cd02396 2 LRLLVPSSQAGSIIGKGGSTIKEIREETGAKIRVSKSVL--PGSTERVVTISGKPSAVQKALLLI 64 (65)
T ss_pred EEEEECHHHcCeeECCCcHHHHHHHHHHCCEEEEcCCCC--CCCCceEEEEEeCHHHHHHHHHhh
Confidence 579999999999999999999999999999999997643 356789999999999999999987
No 19
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
Probab=99.18 E-value=4.5e-11 Score=100.72 Aligned_cols=64 Identities=59% Similarity=0.887 Sum_probs=60.0
Q ss_pred EEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHH
Q psy13906 527 LRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQIC 590 (914)
Q Consensus 527 ~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~ 590 (914)
++|+||.+.+|+|||++|++|++|+++|||+|.+.++..+...+|+|+|.|+++++.+|+.+|.
T Consensus 2 ~r~~ip~~~vg~iIG~~G~~i~~i~~~tga~I~i~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~ 65 (65)
T cd02396 2 LRLLVPSSQAGSIIGKGGSTIKEIREETGAKIRVSKSVLPGSTERVVTISGKPSAVQKALLLIL 65 (65)
T ss_pred EEEEECHHHcCeeECCCcHHHHHHHHHHCCEEEEcCCCCCCCCceEEEEEeCHHHHHHHHHhhC
Confidence 6899999999999999999999999999999999987666788999999999999999999873
No 20
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=99.14 E-value=6.8e-11 Score=98.66 Aligned_cols=61 Identities=33% Similarity=0.489 Sum_probs=55.9
Q ss_pred EEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHH
Q psy13906 709 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLIN 774 (914)
Q Consensus 709 ~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~ 774 (914)
.++.||.+++++|||++|++|++|++.|||+|.|++.. +.++.|+|+|++++|+.|+.+|+
T Consensus 2 ~~i~Vp~~~~~~iIG~~G~~i~~i~~~~g~~I~i~~~~-----~~~~~v~I~G~~~~v~~A~~~i~ 62 (62)
T cd02394 2 EEVEIPKKLHRFIIGKKGSNIRKIMEETGVKIRFPDPG-----SKSDTITITGPKENVEKAKEEIL 62 (62)
T ss_pred eEEEeCHHHhhhccCCCCCcHHHHHHHhCCEEEcCCCC-----CCCCEEEEEcCHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999653 46789999999999999999873
No 21
>KOG2279|consensus
Probab=99.11 E-value=2.8e-10 Score=127.05 Aligned_cols=291 Identities=24% Similarity=0.297 Sum_probs=187.9
Q ss_pred cceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhccCCCCCCC
Q psy13906 78 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 157 (914)
Q Consensus 78 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~~~~~~~~ 157 (914)
..+.+.++|+...+.++||+.|.+|+.|++.++++|.+..+. -..+++..+.|.+.++-.|...+++++.+..
T Consensus 66 k~v~~e~Vv~~e~vkli~gr~gsnik~l~~~t~aKi~L~~ed--~g~e~~~~~~~~p~~v~~a~a~~~~~~~~~~----- 138 (608)
T KOG2279|consen 66 KDIEIEMVVPQEAVKLIIGRQGSNIKQLRKQTGAKIDLDTED--VGDERVLLISGFPVQVCKAKAAIHQILTENT----- 138 (608)
T ss_pred hheeeeEeecccceeeeeccccCCcchhhcccccceecCccc--CCcccchhhccCCCCCChHHHHHHHHHhcCC-----
Confidence 467889999999999999999999999999999999997752 2234455566689999999999988876541
Q ss_pred CCCCCCCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhcccccCCCCCCCCC
Q psy13906 158 IPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQN 237 (914)
Q Consensus 158 ~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~ 237 (914)
T Consensus 139 -------------------------------------------------------------------------------- 138 (608)
T KOG2279|consen 139 -------------------------------------------------------------------------------- 138 (608)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCCccccccccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcC
Q psy13906 238 QNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGT 317 (914)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~ 317 (914)
.+.....+|...++.|+|++|.+++.|+..++++|.+.... -....+.+.|.+.
T Consensus 139 -----------------------pvk~~lsvpqr~~~~i~grgget~~si~~ss~aki~~d~ng---r~g~~~~~~i~~q 192 (608)
T KOG2279|consen 139 -----------------------PVSEQLSVPQRSVGRIIGRGGETIRSICKSSGAKITCDKNG---RLGLSRLIKISGQ 192 (608)
T ss_pred -----------------------cccccccchhhhcccccccchhhhcchhccccccccccccc---ccccccceecccc
Confidence 12445568899999999999999999999999999998652 1235688889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCcccccc
Q psy13906 318 PDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLS 397 (914)
Q Consensus 318 ~e~v~~A~~~I~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 397 (914)
..-++.|+.++.+.++...+..+- +++ ..+..+|.+-|-.- ....| ++..+..+++........
T Consensus 193 qk~~~~a~~~~~~~~~edeelv~~-------~~e-~~q~rvprk~p~n~------~~~~m--~~~~~s~~~h~~~~t~~s 256 (608)
T KOG2279|consen 193 QKEVAAAKHLILEKVSEDEELVKR-------IAE-SAQTRVPRKQPINV------RREDM--TEPGGAGEPHLWKNTSSS 256 (608)
T ss_pred cchHHHHHhhhhccccchhHHhhh-------chh-hcccCCCCCCCccc------cchhh--cccccCCccccCccchhc
Confidence 888889999998877643321110 000 01122333322211 11111 111122222222221111
Q ss_pred ccCC--CcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEe
Q psy13906 398 ALGG--LSDLLGGGSSGGGSGNSGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI 475 (914)
Q Consensus 398 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i 475 (914)
..-+ .++ .+|+ ...=.-..++.-+.+..-..+.......+.|.+|...+|.+||+.|+.++.+...+++.+.|
T Consensus 257 ~spg~~~~~-~eg~----dm~v~vsk~~s~~~~~d~s~~k~~~l~i~e~e~p~~lsg~lig~~gey~s~yssasn~~~hi 331 (608)
T KOG2279|consen 257 MSPGAPLVT-KEGG----DMAVVVSKEGSWEKPSDDSFQKSEALAIPEMEMPEILSGDLIGHAGEYLSVYSSASNHPNHI 331 (608)
T ss_pred cCCCCCCcc-cCCC----cceeEEecccccCCccccccccccccccceeecCcccccchhhhhhhhhhhhhhccCccceE
Confidence 1000 000 0010 00000001111111111111233355677899999999999999999999999999999998
Q ss_pred eCCC-----CCeeEEEEEcChhHHHHHHHHHH
Q psy13906 476 SDSS-----TPERIVTVIGSMDSLFRAFSLIT 502 (914)
Q Consensus 476 ~~~~-----~~ervv~I~G~~e~V~~A~~~I~ 502 (914)
..-- ....+|.+.|+..-+..+..++.
T Consensus 332 ~t~pyt~~v~~~qic~~egkqh~~n~vl~ml~ 363 (608)
T KOG2279|consen 332 WTQPYTSRVLQLQICVNEGKQHYENSVLEMLT 363 (608)
T ss_pred EeccccchhhhhhhheecchhHHHHHHHhhhh
Confidence 7532 22367889999999999988887
No 22
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=99.08 E-value=1.3e-10 Score=96.32 Aligned_cols=60 Identities=35% Similarity=0.684 Sum_probs=54.6
Q ss_pred EEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHH
Q psy13906 708 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLI 773 (914)
Q Consensus 708 ~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li 773 (914)
|.+|.||.+++|+|||++|++|++|++.|||+|.|++. + ....|+|+|++++|+.|+.+|
T Consensus 1 T~~i~vp~~~~~~iIG~~G~~i~~I~~~t~~~I~i~~~-----~-~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 1 TERIEVPSSLVGRIIGKKGSNIKEIEEETGVKIQIPDD-----D-ERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp EEEEEEEHHHHHHHHTGGGHHHHHHHHHHTSEEEEEST-----T-EEEEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECHHHcCEEECCCCCcHHHhhhhcCeEEEEcCC-----C-CcEEEEEEeCHHHHHHHHhhC
Confidence 56899999999999999999999999999999999853 2 445899999999999999986
No 23
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=99.08 E-value=2.6e-10 Score=94.56 Aligned_cols=58 Identities=31% Similarity=0.493 Sum_probs=53.3
Q ss_pred EEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHH
Q psy13906 708 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGT-PDAIALAQYLIN 774 (914)
Q Consensus 708 ~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~-~~~v~~A~~li~ 774 (914)
+..+.||.+++|+|||++|++|++|+++|||+|.|++ ++.|+|+|+ +++++.|+++|+
T Consensus 3 ~~~i~Ip~~~ig~iIGkgG~~ik~I~~~tg~~I~i~~---------~g~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 3 IETMKIPPDKIRDVIGPGGKTIKKIIEETGVKIDIED---------DGTVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred EEEEEeChhheeeeECCCchHHHHHHHHHCCEEEeCC---------CCEEEEEeCCHHHHHHHHHHhC
Confidence 5689999999999999999999999999999999994 257999998 999999999874
No 24
>cd00105 KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.
Probab=99.01 E-value=7.7e-10 Score=92.75 Aligned_cols=63 Identities=46% Similarity=0.759 Sum_probs=57.0
Q ss_pred EEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHH
Q psy13906 709 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLIN 774 (914)
Q Consensus 709 ~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~ 774 (914)
.++.||.+++++|||++|++|++|++.|||+|.|+...+ +..++.|+|.|+.++++.|+.+|+
T Consensus 2 ~~i~ip~~~~~~vIG~~G~~i~~I~~~s~~~I~i~~~~~---~~~~~~v~i~G~~~~v~~a~~~i~ 64 (64)
T cd00105 2 ERVLVPSSLVGRIIGKGGSTIKEIREETGAKIKIPDSGS---GSEERIVTITGTPEAVEKAKELIL 64 (64)
T ss_pred EEEEEchhhcceeECCCCHHHHHHHHHHCCEEEEcCCCC---CCCceEEEEEcCHHHHHHHHHHhC
Confidence 579999999999999999999999999999999996543 457899999999999999999873
No 25
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=98.95 E-value=1e-09 Score=91.52 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=55.9
Q ss_pred EEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHH
Q psy13906 527 LRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQIC 590 (914)
Q Consensus 527 ~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~ 590 (914)
.+|.||..++++|||++|++|++|+++|||+|.+++.. ..++.|+|+|+.++|..|+.+|+
T Consensus 2 ~~i~Vp~~~~~~iIG~~G~~i~~i~~~~g~~I~i~~~~---~~~~~v~I~G~~~~v~~A~~~i~ 62 (62)
T cd02394 2 EEVEIPKKLHRFIIGKKGSNIRKIMEETGVKIRFPDPG---SKSDTITITGPKENVEKAKEEIL 62 (62)
T ss_pred eEEEeCHHHhhhccCCCCCcHHHHHHHhCCEEEcCCCC---CCCCEEEEEcCHHHHHHHHHHhC
Confidence 57899999999999999999999999999999998753 56789999999999999998873
No 26
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=98.93 E-value=1.6e-09 Score=89.78 Aligned_cols=60 Identities=35% Similarity=0.684 Sum_probs=54.7
Q ss_pred EEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHH
Q psy13906 263 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLI 328 (914)
Q Consensus 263 ~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I 328 (914)
|.+|.||.+++++|||++|++|++|+++|||+|.|++. + ....|+|+|++++|+.|+++|
T Consensus 1 T~~i~vp~~~~~~iIG~~G~~i~~I~~~t~~~I~i~~~-----~-~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 1 TERIEVPSSLVGRIIGKKGSNIKEIEEETGVKIQIPDD-----D-ERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp EEEEEEEHHHHHHHHTGGGHHHHHHHHHHTSEEEEEST-----T-EEEEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECHHHcCEEECCCCCcHHHhhhhcCeEEEEcCC-----C-CcEEEEEEeCHHHHHHHHhhC
Confidence 57899999999999999999999999999999999853 2 456999999999999999886
No 27
>cd00105 KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.
Probab=98.82 E-value=8.9e-09 Score=86.24 Aligned_cols=62 Identities=48% Similarity=0.706 Sum_probs=56.3
Q ss_pred EEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHH
Q psy13906 527 LRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589 (914)
Q Consensus 527 ~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I 589 (914)
.+|.||..++++|||++|++|++|+++|||+|.|.... ....++.|.|.|+.+++..|+.+|
T Consensus 2 ~~i~ip~~~~~~vIG~~G~~i~~I~~~s~~~I~i~~~~-~~~~~~~v~i~G~~~~v~~a~~~i 63 (64)
T cd00105 2 ERVLVPSSLVGRIIGKGGSTIKEIREETGAKIKIPDSG-SGSEERIVTITGTPEAVEKAKELI 63 (64)
T ss_pred EEEEEchhhcceeECCCCHHHHHHHHHHCCEEEEcCCC-CCCCceEEEEEcCHHHHHHHHHHh
Confidence 58999999999999999999999999999999998743 256789999999999999999876
No 28
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=98.82 E-value=8.7e-09 Score=85.46 Aligned_cols=58 Identities=31% Similarity=0.493 Sum_probs=53.2
Q ss_pred EEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHH
Q psy13906 263 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGT-PDAIALAQYLIN 329 (914)
Q Consensus 263 ~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~-~e~v~~A~~~I~ 329 (914)
...+.||.+++++|||++|++|++|+++|||+|.|.+ +..|.|.|+ .++++.|+.+|+
T Consensus 3 ~~~i~Ip~~~ig~iIGkgG~~ik~I~~~tg~~I~i~~---------~g~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 3 IETMKIPPDKIRDVIGPGGKTIKKIIEETGVKIDIED---------DGTVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred EEEEEeChhheeeeECCCchHHHHHHHHHCCEEEeCC---------CCEEEEEeCCHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999974 368999998 899999999873
No 29
>PF13014 KH_3: KH domain
Probab=98.71 E-value=2e-08 Score=77.19 Aligned_cols=43 Identities=49% Similarity=0.834 Sum_probs=38.1
Q ss_pred cccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc
Q psy13906 717 LIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG 761 (914)
Q Consensus 717 ~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G 761 (914)
+||+|||++|++|++|+++|||+|+|++. ..+++.++.|+|+|
T Consensus 1 ~vg~iIG~~G~~I~~I~~~tg~~I~i~~~--~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 1 FVGRIIGKGGSTIKEIREETGAKIQIPPE--NEPGSNERVVTITG 43 (43)
T ss_pred CcCeEECCCChHHHHHHHHhCcEEEECCc--cCCCCCceEEEEEC
Confidence 58999999999999999999999999982 33466889999998
No 30
>PF13014 KH_3: KH domain
Probab=98.69 E-value=2.4e-08 Score=76.78 Aligned_cols=43 Identities=51% Similarity=0.787 Sum_probs=40.6
Q ss_pred ccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEec
Q psy13906 535 QCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKG 577 (914)
Q Consensus 535 ~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G 577 (914)
+||+|||++|++|++|+++|+|+|+|+++..+++.++.|+|+|
T Consensus 1 ~vg~iIG~~G~~I~~I~~~tg~~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 1 FVGRIIGKGGSTIKEIREETGAKIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred CcCeEECCCChHHHHHHHHhCcEEEECCccCCCCCceEEEEEC
Confidence 5899999999999999999999999999777889999999998
No 31
>smart00322 KH K homology RNA-binding domain.
Probab=98.65 E-value=1e-07 Score=80.27 Aligned_cols=67 Identities=33% Similarity=0.592 Sum_probs=59.8
Q ss_pred ceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 706 QITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSV 777 (914)
Q Consensus 706 ~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i 777 (914)
..+.++.||.++++++||++|++|++|++.||++|.+.... .....|+|.|+.++++.|+.+|.+.+
T Consensus 2 ~~~~~i~i~~~~~~~liG~~G~~i~~i~~~~~~~i~~~~~~-----~~~~~v~i~g~~~~v~~a~~~i~~~~ 68 (69)
T smart00322 2 PVTIEVLIPADKVGLIIGKGGSTIKKIEEETGVKIDIPEDG-----SEERVVEITGPPENVEKAAELILEIL 68 (69)
T ss_pred ceEEEEEEcchhcceeECCCchHHHHHHHHHCCEEEECCCC-----CCccEEEEEcCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999998542 25688999999999999999998876
No 32
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=98.55 E-value=4.7e-07 Score=90.57 Aligned_cols=142 Identities=22% Similarity=0.347 Sum_probs=107.3
Q ss_pred ceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEec-----CHHHHHHHHHHHHHHhccCCC
Q psy13906 79 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKG-----VPDAVTQAIYQICLIMVDSPP 153 (914)
Q Consensus 79 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G-----~~~~V~~A~~~I~~~l~~~~~ 153 (914)
.....+.||...++.+||+.|.+.+.|.+.++++|.++ +.+..|.|.. +|..+.+|.+.|..+-+..++
T Consensus 7 ~~~~~v~iPk~R~~~lig~~g~v~k~ie~~~~~~~~iD------~~~~~V~i~~~~~t~Dp~~~~ka~d~VkAIgrGF~p 80 (194)
T COG1094 7 KSSEAVKIPKDRIGVLIGKWGEVKKAIEEKTGVKLRID------SKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPP 80 (194)
T ss_pred cceeeeecCchhheeeecccccchHHHHhhcCeEEEEE------CCCCeEEEEecCCCCChHHHHHHHHHHHHHhcCCCH
Confidence 34567999999999999999999999999999999995 4467888764 477889999999877554321
Q ss_pred CCCCCCCCCCCCCCCCCCccCCccccCCcCCCCCCCCCCCcccccccCCCCCCCCCCCCCCChHHHhhhhcccccCCCCC
Q psy13906 154 KGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMP 233 (914)
Q Consensus 154 ~~~~~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~s~~~~~~~~ 233 (914)
.......+
T Consensus 81 e~A~~LL~------------------------------------------------------------------------ 88 (194)
T COG1094 81 EKALKLLE------------------------------------------------------------------------ 88 (194)
T ss_pred HHHHHHhc------------------------------------------------------------------------
Confidence 11000000
Q ss_pred CCCCccccccCCCCCCCCCccccccccceEEEEEe------c----ccccccccccCcchHHHHHhhhCCEEEEcCCCCC
Q psy13906 234 RNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTV------P----NELIGAVIGKGGTKIFEIRKISGAMIRISKSSEE 303 (914)
Q Consensus 234 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~I------p----~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~ 303 (914)
.+.+...|.+ + ....++|||++|.+.+.|+.-|+|.|.|.
T Consensus 89 -------------------------d~~~levIdi~~~~~~~~~~l~R~kgRIIG~~GkTr~~IE~lt~~~I~V~----- 138 (194)
T COG1094 89 -------------------------DDYYLEVIDLKDVVTLSGDHLRRIKGRIIGREGKTRRAIEELTGVYISVY----- 138 (194)
T ss_pred -------------------------CCcEEEEEEHHHhccCchhhhhHhhceeeCCCchHHHHHHHHhCCeEEEe-----
Confidence 0001111111 1 23459999999999999999999999997
Q ss_pred CCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 304 EEDSNDRTITMTGTPDAIALAQYLINMSVE 333 (914)
Q Consensus 304 ~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve 333 (914)
..+|.|.|.+++|+.|+..|+++++
T Consensus 139 -----g~tVaiiG~~~~v~iAr~AVemli~ 163 (194)
T COG1094 139 -----GKTVAIIGGFEQVEIAREAVEMLIN 163 (194)
T ss_pred -----CcEEEEecChhhhHHHHHHHHHHHc
Confidence 3699999999999999999999885
No 33
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=98.50 E-value=9.3e-07 Score=88.46 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=106.8
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEc-----ChhHHHHHHHHHHHHHHHhhhcccc
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIG-----SMDSLFRAFSLITKNIEEFHKNQNK 514 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G-----~~e~V~~A~~~I~~~i~~~~~~~~~ 514 (914)
....+.||.+.++.+||+.|++.+.|.+.++++|.+... +..|.|.. ++-.+.+|...|..+-..|......
T Consensus 8 ~~~~v~iPk~R~~~lig~~g~v~k~ie~~~~~~~~iD~~---~~~V~i~~~~~t~Dp~~~~ka~d~VkAIgrGF~pe~A~ 84 (194)
T COG1094 8 SSEAVKIPKDRIGVLIGKWGEVKKAIEEKTGVKLRIDSK---TGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKAL 84 (194)
T ss_pred ceeeeecCchhheeeecccccchHHHHhhcCeEEEEECC---CCeEEEEecCCCCChHHHHHHHHHHHHHhcCCCHHHHH
Confidence 355689999999999999999999999999999999754 34455543 5778888888877665443221110
Q ss_pred cCCCCCCCcceEEEEEe----c------CCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHH
Q psy13906 515 HLGGNGESQLIQLRLIV----P------ASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 584 (914)
Q Consensus 515 ~~~~~~~~~~~~~~l~V----P------~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~ 584 (914)
.+-. +...-..+.+ - ...-|+|||++|.+.+.|++.|+|+|.|.. ..|.|-|.+++|+.
T Consensus 85 ~LL~---d~~~levIdi~~~~~~~~~~l~R~kgRIIG~~GkTr~~IE~lt~~~I~V~g--------~tVaiiG~~~~v~i 153 (194)
T COG1094 85 KLLE---DDYYLEVIDLKDVVTLSGDHLRRIKGRIIGREGKTRRAIEELTGVYISVYG--------KTVAIIGGFEQVEI 153 (194)
T ss_pred HHhc---CCcEEEEEEHHHhccCchhhhhHhhceeeCCCchHHHHHHHHhCCeEEEeC--------cEEEEecChhhhHH
Confidence 0000 0001111111 1 234599999999999999999999999987 47999999999999
Q ss_pred HHHHHHHHhccCC
Q psy13906 585 AIYQICLIMVDSP 597 (914)
Q Consensus 585 A~~~I~~~l~e~~ 597 (914)
|.+.|+.++...+
T Consensus 154 Ar~AVemli~G~~ 166 (194)
T COG1094 154 AREAVEMLINGAP 166 (194)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998864
No 34
>smart00322 KH K homology RNA-binding domain.
Probab=98.48 E-value=3.9e-07 Score=76.68 Aligned_cols=66 Identities=35% Similarity=0.586 Sum_probs=60.3
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHH
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 505 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i 505 (914)
.+.++.||...++.+||++|.+|++|+++|+++|.+.........+.|.|+.+++..|...|.+.+
T Consensus 3 ~~~~i~i~~~~~~~liG~~G~~i~~i~~~~~~~i~~~~~~~~~~~v~i~g~~~~v~~a~~~i~~~~ 68 (69)
T smart00322 3 VTIEVLIPADKVGLIIGKGGSTIKKIEEETGVKIDIPEDGSEERVVEITGPPENVEKAAELILEIL 68 (69)
T ss_pred eEEEEEEcchhcceeECCCchHHHHHHHHHCCEEEECCCCCCccEEEEEcCHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999876556789999999999999999998875
No 35
>KOG2113|consensus
Probab=98.37 E-value=7.1e-07 Score=93.56 Aligned_cols=150 Identities=22% Similarity=0.272 Sum_probs=119.0
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCC
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLG 517 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~ 517 (914)
+.++..+.+|...++.|.|++|.+||.|+.+|.+.|+-+.. ..+.++.++|..+.|..|++.|...-+.+.-.......
T Consensus 24 ~nvt~sv~vps~~v~~ivg~qg~kikalr~KTqtyi~tPsr-~eePiF~vTg~~edv~~aRrei~saaeH~~l~~~s~s~ 102 (394)
T KOG2113|consen 24 QNVTESVEVPSEHVAEIVGRQGCKIKALRAKTQTYIKTPSR-GEEPIFPVTGRHEDVRRARREIPSAAEHFGLIRASRSF 102 (394)
T ss_pred CccceeeecCcccceeecccCccccchhhhhhcceeccCCC-CCCCcceeccCchhHHHHhhcCccccceeeeeeecccc
Confidence 66788888999999999999999999999999999987643 34588999999999999999999877664333222211
Q ss_pred CCC-----CCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHH-HHHHH-HHHH
Q psy13906 518 GNG-----ESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDA-VTQAI-YQIC 590 (914)
Q Consensus 518 ~~~-----~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~-V~~A~-~~I~ 590 (914)
.++ .....+...-+|-..+|.+.|..|.+|+.|++.+...|.-+- .+.+.++.++|.+++ +++|. ..|+
T Consensus 103 Sgg~~~~s~s~qt~sy~svP~rvvglvv~~~~~ti~~iqq~tnt~I~T~v----~~~~~Vf~Vtg~~~nC~kra~s~eie 178 (394)
T KOG2113|consen 103 SGGTNGASASGQTTSYVSVPLRVVGLVVGPKGATIKRIQQFTNTYIATPV----RCGEPVFCVTGAPKNCVKRARSCEIE 178 (394)
T ss_pred cCCCccccccCCCceeeeccceeeeeccccccCccchheecccceEeeec----cCCCceEEEecCCcchhhhccccchh
Confidence 111 245677888999999999999999999999999999997543 456778999999999 45555 4555
Q ss_pred HH
Q psy13906 591 LI 592 (914)
Q Consensus 591 ~~ 592 (914)
.-
T Consensus 179 ~t 180 (394)
T KOG2113|consen 179 QT 180 (394)
T ss_pred hh
Confidence 43
No 36
>KOG2113|consensus
Probab=98.11 E-value=2.4e-06 Score=89.69 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=108.1
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhh-----hccccCCCCC
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHK-----NQNKHLGGNG 75 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~-----~~~~~~~~~~ 75 (914)
+|+++|+.|+|++|..||.|+.+|.+.|+-+.- ..+.+..++|..++|.+|++.|...-+-..- .......+..
T Consensus 32 vps~~v~~ivg~qg~kikalr~KTqtyi~tPsr-~eePiF~vTg~~edv~~aRrei~saaeH~~l~~~s~s~Sgg~~~~s 110 (394)
T KOG2113|consen 32 VPSEHVAEIVGRQGCKIKALRAKTQTYIKTPSR-GEEPIFPVTGRHEDVRRARREIPSAAEHFGLIRASRSFSGGTNGAS 110 (394)
T ss_pred cCcccceeecccCccccchhhhhhcceeccCCC-CCCCcceeccCchhHHHHhhcCccccceeeeeeecccccCCCcccc
Confidence 478999999999999999999999999998654 4568999999999999999998774432111 1111111112
Q ss_pred CCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHH-HHHHH-HHHHH
Q psy13906 76 ESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDA-VTQAI-YQICL 146 (914)
Q Consensus 76 ~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~-V~~A~-~~I~~ 146 (914)
.+.+.+...-+|...++.|.|.+|++|+.|++.+...|...- ...+.++.++|.+.+ +++|. ..|..
T Consensus 111 ~s~qt~sy~svP~rvvglvv~~~~~ti~~iqq~tnt~I~T~v----~~~~~Vf~Vtg~~~nC~kra~s~eie~ 179 (394)
T KOG2113|consen 111 ASGQTTSYVSVPLRVVGLVVGPKGATIKRIQQFTNTYIATPV----RCGEPVFCVTGAPKNCVKRARSCEIEQ 179 (394)
T ss_pred ccCCCceeeeccceeeeeccccccCccchheecccceEeeec----cCCCceEEEecCCcchhhhccccchhh
Confidence 245677788899999999999999999999999999887653 345678899999998 45555 44544
No 37
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=98.05 E-value=1.1e-05 Score=76.32 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=50.4
Q ss_pred ccccccccCCcchHHHHHhhhCCEEEEcCCCCCC--------------CCCCceEEEEEcC---HHHHHHHHHHHHHHHH
Q psy13906 716 ELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEE--------------EDSNDRTITMTGT---PDAIALAQYLINMSVE 778 (914)
Q Consensus 716 ~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~--------------~~~~~r~i~I~G~---~~~v~~A~~li~~~i~ 778 (914)
+++|+|||.+|++|++|+++|||+|.|.....-. ..+..-.|.|++. .++++.|+.+|+.++.
T Consensus 15 N~IG~IIGPgG~tiK~i~~eTg~kI~Irg~gs~~~~~~~~~~~~~~~~~~~eplhV~I~a~~~~~e~~~~A~~~I~~ll~ 94 (120)
T cd02395 15 NFVGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHLNEPLHVLITAETPPEEALAKAVEAIEELLK 94 (120)
T ss_pred CeeEEEECCCChHHHHHHHHHCCEEEEecCcccccccccccccCcccccCCCCcEEEEEeCCcHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999998642100 0122356899985 5999999999998885
No 38
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=97.88 E-value=3.1e-05 Score=73.17 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=50.8
Q ss_pred cccccccccCcchHHHHHhhhCCEEEEcCCCCC--------------CCCCCceEEEEEcC---HHHHHHHHHHHHHHHH
Q psy13906 271 ELIGAVIGKGGTKIFEIRKISGAMIRISKSSEE--------------EEDSNDRTITMTGT---PDAIALAQYLINMSVE 333 (914)
Q Consensus 271 ~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~--------------~~~~~~~~i~I~G~---~e~v~~A~~~I~~~ve 333 (914)
+++|.|||++|++|++|+++|||+|.|...... ......-.|.|++. .+++++|+.+|+.++.
T Consensus 15 N~IG~IIGPgG~tiK~i~~eTg~kI~Irg~gs~~~~~~~~~~~~~~~~~~~eplhV~I~a~~~~~e~~~~A~~~I~~ll~ 94 (120)
T cd02395 15 NFVGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHLNEPLHVLITAETPPEEALAKAVEAIEELLK 94 (120)
T ss_pred CeeEEEECCCChHHHHHHHHHCCEEEEecCcccccccccccccCcccccCCCCcEEEEEeCCcHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999999999865210 01123368899885 4999999999998886
No 39
>PRK08406 transcription elongation factor NusA-like protein; Validated
Probab=97.42 E-value=0.00023 Score=69.29 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=34.4
Q ss_pred eEEEEEecCCccceeeccCCchHHHHHhhcCceEEEcc
Q psy13906 525 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 562 (914)
Q Consensus 525 ~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~ 562 (914)
-.+.++|+...+|..||++|++|+.|++..|-+|.+..
T Consensus 32 ~~vi~vV~~~~vG~~IG~~G~rI~~i~e~lgekIdVve 69 (140)
T PRK08406 32 DRIIFVVKEGDMGLAIGKGGENVKRLEEKLGKDIELVE 69 (140)
T ss_pred CEEEEEEeCCCccccCCcCchHHHHHHHHhCCceEEEE
Confidence 46788999999999999999999999999999998764
No 40
>PRK08406 transcription elongation factor NusA-like protein; Validated
Probab=97.29 E-value=0.00042 Score=67.49 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=71.9
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGN 519 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~ 519 (914)
-.+.++|+...+|..||++|++|+.|++..|-+|.+-.-+. .+...|...+....-..- .. .
T Consensus 32 ~~vi~vV~~~~vG~~IG~~G~rI~~i~e~lgekIdVve~s~---------------d~~~fI~n~l~Pa~V~~v-~I--~ 93 (140)
T PRK08406 32 DRIIFVVKEGDMGLAIGKGGENVKRLEEKLGKDIELVEYSD---------------DPEEFIKNIFAPAAVRSV-TI--K 93 (140)
T ss_pred CEEEEEEeCCCccccCCcCchHHHHHHHHhCCceEEEEcCC---------------CHHHHHHHHcCCCEEEEE-EE--E
Confidence 35667888999999999999999999999998888764321 122333333322110000 00 0
Q ss_pred CCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 520 GESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 520 ~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
.........+.|+....|.+|||+|.+|+.++.-++-++.+.
T Consensus 94 ~~~~~~~~~V~V~~~d~g~aIGK~G~ni~la~~L~~~~~di~ 135 (140)
T PRK08406 94 KKNGDKVAYVEVAPEDKGIAIGKNGKNIERAKDLAKRHFDID 135 (140)
T ss_pred ecCCcEEEEEEECccccchhhCCCCHHHHHHHHHhCCccCCe
Confidence 001234567889999999999999999999999998877653
No 41
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=97.28 E-value=0.0012 Score=79.40 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEe
Q psy13906 52 AFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIK 131 (914)
Q Consensus 52 A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~ 131 (914)
++..|.+++++..... ......-.....+.||.++++.|||++|.+||+|.++||++|.+.. +..|.|.
T Consensus 554 g~~~Il~~m~~al~~p----~~~s~~aP~~~~~~I~~~ki~~vIG~gGk~I~~i~~~tg~~Idi~d-------~G~V~I~ 622 (719)
T TIGR02696 554 ARLAILDVMAEAIDTP----DEMSPYAPRIITVKIPVDKIGEVIGPKGKMINQIQDETGAEISIED-------DGTVYIG 622 (719)
T ss_pred HHHHHHHHHHHHHhCc----cccccCCCeeEEEEeChHHhhheeCCCcHhHHHHHHHHCCEEEEec-------CcEEEEE
Confidence 3445555555544322 1122233567889999999999999999999999999999999964 6789988
Q ss_pred cC-HHHHHHHHHHHHHHhcc
Q psy13906 132 GV-PDAVTQAIYQICLIMVD 150 (914)
Q Consensus 132 G~-~~~V~~A~~~I~~~l~~ 150 (914)
+. .+.+++|+.+|..++..
T Consensus 623 a~d~~~~~~A~~~I~~i~~~ 642 (719)
T TIGR02696 623 AADGPSAEAARAMINAIANP 642 (719)
T ss_pred eCCHHHHHHHHHHHHHhhCc
Confidence 75 78999999999888874
No 42
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=97.19 E-value=0.0017 Score=78.32 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEE
Q psy13906 496 RAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNI 575 (914)
Q Consensus 496 ~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I 575 (914)
+++..|.+++++....+ .. .....+....+.||.+.+|.|||+||.+||+|+++|||+|.+..+ ..|.|
T Consensus 553 ~g~~~Il~~m~~al~~p-~~---~s~~aP~~~~~~I~~~ki~~vIG~gGk~I~~i~~~tg~~Idi~d~-------G~V~I 621 (719)
T TIGR02696 553 DARLAILDVMAEAIDTP-DE---MSPYAPRIITVKIPVDKIGEVIGPKGKMINQIQDETGAEISIEDD-------GTVYI 621 (719)
T ss_pred HHHHHHHHHHHHHHhCc-cc---cccCCCeeEEEEeChHHhhheeCCCcHhHHHHHHHHCCEEEEecC-------cEEEE
Confidence 33445555555544333 11 112345678899999999999999999999999999999998763 67888
Q ss_pred ec-CHHHHHHHHHHHHHHhcc
Q psy13906 576 KG-VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 576 ~G-~~e~V~~A~~~I~~~l~e 595 (914)
.+ ..+.+++|+.+|..++..
T Consensus 622 ~a~d~~~~~~A~~~I~~i~~~ 642 (719)
T TIGR02696 622 GAADGPSAEAARAMINAIANP 642 (719)
T ss_pred EeCCHHHHHHHHHHHHHhhCc
Confidence 88 668899999999999975
No 43
>KOG0119|consensus
Probab=96.99 E-value=0.0015 Score=73.33 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=58.2
Q ss_pred ceEEEEEecc------cccccccccCcchHHHHHhhhCCEEEEcCCCC-------------CCCCCCceEEEEEcC-HHH
Q psy13906 261 QITKEMTVPN------ELIGAVIGKGGTKIFEIRKISGAMIRISKSSE-------------EEEDSNDRTITMTGT-PDA 320 (914)
Q Consensus 261 ~~~~~i~Ip~------~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~-------------~~~~~~~~~i~I~G~-~e~ 320 (914)
.+..++.||. +|+|.|||..|.++++|+++|||+|.|.-... ......+-.|.|+.+ .|.
T Consensus 137 ~~~~Kv~IPvke~Pd~NFvGLiiGPRG~TqK~lE~etgAKI~IRGkgSvkEgk~~~~d~~~~~~~~epLH~~Isadt~ek 216 (554)
T KOG0119|consen 137 KLHDKVYIPVKEFPDINFVGLIIGPRGNTQKRLERETGAKIAIRGKGSVKEGKGRSDDLSYIPKENEPLHCLISADTQEK 216 (554)
T ss_pred ccccceecchhhcCCcceeEEEecCCccHHHHHHHHhCCeEEEeccccccccccCCcccccccccccceeEEEecchHHH
Confidence 3466777776 58999999999999999999999999986211 111223457888875 689
Q ss_pred HHHHHHHHHHHHHHH
Q psy13906 321 IALAQYLINMSVELL 335 (914)
Q Consensus 321 v~~A~~~I~~~ve~~ 335 (914)
|++|.++|+.+|+..
T Consensus 217 i~~Ai~vienli~~a 231 (554)
T KOG0119|consen 217 IKKAIAVIENLIQSA 231 (554)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999753
No 44
>KOG0336|consensus
Probab=96.98 E-value=0.0018 Score=71.24 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=63.3
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHh
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRA 782 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~ 782 (914)
.......+.|-+.+||.|||++|++|+.|+..|.++|+|.+. ..+-.|+|.|..+--.+|+..|...++...+
T Consensus 44 ~~e~plcf~iks~mvg~vigrggskik~iq~~tnt~iqii~~------~~e~kv~ifg~~~m~~kaka~id~~~~k~e~ 116 (629)
T KOG0336|consen 44 GGEFPLCFSIKSEMVGKVIGRGGSKIKRIQNDTNTRIQIIKC------DLEVKVTIFGINHMRKKAKASIDRGQDKDER 116 (629)
T ss_pred CCCCchhhhhhhhhhheeeccCcchhhhhhcccceeEEEecc------CceeEEEEechHHHHHHHHhhHhhhhhhhhh
Confidence 456667889999999999999999999999999999999974 2567899999999999999999888865544
No 45
>KOG0119|consensus
Probab=96.96 E-value=0.0044 Score=69.79 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=56.5
Q ss_pred ceEEEEEec------CCccceeeccCCchHHHHHhhcCceEEEccC--------------CCCCCCc-ceEEEec-CHHH
Q psy13906 524 LIQLRLIVP------ASQCGSIIGKGGSQIKTIRETSGASVYVASD--------------MLPNSTE-REVNIKG-VPDA 581 (914)
Q Consensus 524 ~~~~~l~VP------~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~--------------~~p~~~e-r~V~I~G-~~e~ 581 (914)
.++.+|.|| -+++|+|||.+|.|.|+|+++|||+|.|... ..+...| -.+.|+. +.|.
T Consensus 137 ~~~~Kv~IPvke~Pd~NFvGLiiGPRG~TqK~lE~etgAKI~IRGkgSvkEgk~~~~d~~~~~~~~epLH~~Isadt~ek 216 (554)
T KOG0119|consen 137 KLHDKVYIPVKEFPDINFVGLIIGPRGNTQKRLERETGAKIAIRGKGSVKEGKGRSDDLSYIPKENEPLHCLISADTQEK 216 (554)
T ss_pred ccccceecchhhcCCcceeEEEecCCccHHHHHHHHhCCeEEEeccccccccccCCcccccccccccceeEEEecchHHH
Confidence 466677777 4678999999999999999999999999751 1122233 3566777 5578
Q ss_pred HHHHHHHHHHHhccC
Q psy13906 582 VTQAIYQICLIMVDS 596 (914)
Q Consensus 582 V~~A~~~I~~~l~e~ 596 (914)
|++|+..|+.+|.+.
T Consensus 217 i~~Ai~vienli~~a 231 (554)
T KOG0119|consen 217 IKKAIAVIENLIQSA 231 (554)
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999999873
No 46
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=96.85 E-value=0.0032 Score=77.09 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=55.7
Q ss_pred ceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEec-CHHHHHHHHHHHHHHhc
Q psy13906 79 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKG-VPDAVTQAIYQICLIMV 149 (914)
Q Consensus 79 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G-~~~~V~~A~~~I~~~l~ 149 (914)
.....+.||.+.++.|||++|.+||+|+++|||+|.+.. +..|.|.+ ..+.+.+|..+|..+..
T Consensus 550 p~~~~~~I~~~kI~~vIG~gGk~Ik~I~~~tg~~I~i~d-------dG~V~i~~~~~~~~~~a~~~I~~~~~ 614 (684)
T TIGR03591 550 PRIETIKINPDKIRDVIGPGGKVIREITEETGAKIDIED-------DGTVKIAASDGEAAEAAIKMIEGITA 614 (684)
T ss_pred CeEEEEecCHHHHHhhcCCCcHHHHHHHHHHCCEEEEec-------CeEEEEEECcHHHHHHHHHHHHhhhc
Confidence 567889999999999999999999999999999999964 56777775 57788999999987755
No 47
>KOG0336|consensus
Probab=96.80 E-value=0.0028 Score=69.78 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=58.6
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhh
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFH 509 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~ 509 (914)
.++.+.+.+-+++||.|||++|++|++|+..|+++|+|... ..+-.|+|.|..+--.+|+..|...++..+
T Consensus 45 ~e~plcf~iks~mvg~vigrggskik~iq~~tnt~iqii~~-~~e~kv~ifg~~~m~~kaka~id~~~~k~e 115 (629)
T KOG0336|consen 45 GEFPLCFSIKSEMVGKVIGRGGSKIKRIQNDTNTRIQIIKC-DLEVKVTIFGINHMRKKAKASIDRGQDKDE 115 (629)
T ss_pred CCCchhhhhhhhhhheeeccCcchhhhhhcccceeEEEecc-CceeEEEEechHHHHHHHHhhHhhhhhhhh
Confidence 34566778889999999999999999999999999999754 446778999998888888887777666543
No 48
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=96.73 E-value=0.0041 Score=76.15 Aligned_cols=66 Identities=26% Similarity=0.332 Sum_probs=56.2
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEec-CHHHHHHHHHHHHHHhcc
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKG-VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G-~~e~V~~A~~~I~~~l~e 595 (914)
.+....+.||.+.++.|||++|++||+|+++|||+|.+..+ ..|.|.+ ..+.+++|+..|..+..+
T Consensus 549 ~p~~~~~~I~~~kI~~vIG~gGk~Ik~I~~~tg~~I~i~dd-------G~V~i~~~~~~~~~~a~~~I~~~~~~ 615 (684)
T TIGR03591 549 APRIETIKINPDKIRDVIGPGGKVIREITEETGAKIDIEDD-------GTVKIAASDGEAAEAAIKMIEGITAE 615 (684)
T ss_pred CCeEEEEecCHHHHHhhcCCCcHHHHHHHHHHCCEEEEecC-------eEEEEEECcHHHHHHHHHHHHhhhcc
Confidence 35677899999999999999999999999999999998763 4666666 567889999999988654
No 49
>TIGR01952 nusA_arch NusA family KH domain protein, archaeal. This model represents a family of archaeal proteins found in a single copy per genome. It contains two KH domains (pfam00013) and is most closely related to the central region bacterial NusA, a transcription termination factor named for its iteraction with phage lambda protein N in E. coli. The proteins required for antitermination by N include NusA, NusB, nusE (ribosomal protein S10), and nusG. This system, on the whole, appears not to be present in the Archaea.
Probab=96.37 E-value=0.002 Score=62.51 Aligned_cols=97 Identities=23% Similarity=0.313 Sum_probs=64.6
Q ss_pred CCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceE
Q psy13906 2 QGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQ 81 (914)
Q Consensus 2 ~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (914)
....+|..||++|++|+.|++..|-+|.|-.. +.+.+. .|...+....-. ...... .+....
T Consensus 40 ~~g~vG~~IG~~G~rIk~i~el~gekIdVVey---------s~D~~~------fI~N~l~PA~V~--~V~i~~-~~~~~~ 101 (141)
T TIGR01952 40 KEGEMGAAIGKGGENVKRLEELIGKSIELIEY---------SENLEE------FVANKLAPAEVK--NVTVSE-FNGKKV 101 (141)
T ss_pred cCCCccccCCCCchHHHHHHHhcCCeeEEEEc---------CCCHHH------HHHHcCCCceEE--EEEEEc-CCCCEE
Confidence 34689999999999999999888999988552 122211 122222111100 000000 112456
Q ss_pred EEEEeeccccceeeccCchhHHHHHhhcCcEEEEc
Q psy13906 82 LRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 116 (914)
Q Consensus 82 ~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~ 116 (914)
..+.||.++.+..|||+|.+|+-..+-++-++.+.
T Consensus 102 a~V~V~~~d~~~AIGk~G~Ni~la~~l~~~~~dI~ 136 (141)
T TIGR01952 102 AYVEVHPRDKGIAIGKGGKNIERAKELAKRHHDID 136 (141)
T ss_pred EEEEEChhhhhhhhCCCchhHHHHHHHhcCccCCe
Confidence 77899999999999999999999999998887653
No 50
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=96.34 E-value=0.012 Score=72.67 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=57.0
Q ss_pred cceEEEEEeeccccceeeccCchhHHHHHhhcCcE-EEEccCCCCCCCCceEEEec-CHHHHHHHHHHHHHHhcc
Q psy13906 78 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGAS-VYVASDMLPNSTEREVNIKG-VPDAVTQAIYQICLIMVD 150 (914)
Q Consensus 78 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~-I~v~~~~~~~~~dr~V~I~G-~~~~V~~A~~~I~~~l~~ 150 (914)
-.....|.||.++++.|||.+|.+||+|.++||+. |.+.. +..|.|.+ +.+.+++|+.+|..++.+
T Consensus 683 aP~i~~~~i~~~ki~~vIG~GGktIk~I~eetg~~~Idi~d-------dg~V~I~a~d~~~i~~A~~~I~~l~~~ 750 (891)
T PLN00207 683 APLIHIMKVKPEKVNMIIGSGGKKVKSIIEETGVEAIDTQD-------DGTVKITAKDLSSLEKSKAIISSLTMV 750 (891)
T ss_pred CCeeEEEEcCHHHHHHHhcCCchhHHHHHHHHCCCccCcCC-------CeeEEEEeCCHHHHHHHHHHHHHHhcC
Confidence 35678899999999999999999999999999999 86643 56888887 478999999999888764
No 51
>TIGR01952 nusA_arch NusA family KH domain protein, archaeal. This model represents a family of archaeal proteins found in a single copy per genome. It contains two KH domains (pfam00013) and is most closely related to the central region bacterial NusA, a transcription termination factor named for its iteraction with phage lambda protein N in E. coli. The proteins required for antitermination by N include NusA, NusB, nusE (ribosomal protein S10), and nusG. This system, on the whole, appears not to be present in the Archaea.
Probab=96.32 E-value=0.0048 Score=59.94 Aligned_cols=103 Identities=24% Similarity=0.363 Sum_probs=68.7
Q ss_pred eeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCC
Q psy13906 441 RMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNG 520 (914)
Q Consensus 441 ~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~ 520 (914)
.+-+.|....+|..||++|++|+.|++..|-+|.+-.-+ .+++. .|...+.-..-. .-.. ..
T Consensus 34 riifvV~~g~vG~~IG~~G~rIk~i~el~gekIdVVeys---------~D~~~------fI~N~l~PA~V~-~V~i--~~ 95 (141)
T TIGR01952 34 RVVFVVKEGEMGAAIGKGGENVKRLEELIGKSIELIEYS---------ENLEE------FVANKLAPAEVK-NVTV--SE 95 (141)
T ss_pred EEEEEEcCCCccccCCCCchHHHHHHHhcCCeeEEEEcC---------CCHHH------HHHHcCCCceEE-EEEE--Ec
Confidence 455678888999999999999999998889888875422 11111 111111110000 0000 00
Q ss_pred CCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 521 ESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 521 ~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
.+......+.||.+..+..|||+|.+++-..+-++-++.+.
T Consensus 96 ~~~~~~a~V~V~~~d~~~AIGk~G~Ni~la~~l~~~~~dI~ 136 (141)
T TIGR01952 96 FNGKKVAYVEVHPRDKGIAIGKGGKNIERAKELAKRHHDID 136 (141)
T ss_pred CCCCEEEEEEEChhhhhhhhCCCchhHHHHHHHhcCccCCe
Confidence 01235677889999999999999999999999998877654
No 52
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=96.24 E-value=0.0084 Score=74.01 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=57.2
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCce-EEEccCCCCCCCcceEEEec-CHHHHHHHHHHHHHHhcc
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGAS-VYVASDMLPNSTEREVNIKG-VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~-I~v~~~~~p~~~er~V~I~G-~~e~V~~A~~~I~~~l~e 595 (914)
.+....+.||.+.++.|||.||.+||+|.++||+. |.+.. +-.|.|.+ ..+.+++|+..|..++.+
T Consensus 683 aP~i~~~~i~~~ki~~vIG~GGktIk~I~eetg~~~Idi~d-------dg~V~I~a~d~~~i~~A~~~I~~l~~~ 750 (891)
T PLN00207 683 APLIHIMKVKPEKVNMIIGSGGKKVKSIIEETGVEAIDTQD-------DGTVKITAKDLSSLEKSKAIISSLTMV 750 (891)
T ss_pred CCeeEEEEcCHHHHHHHhcCCchhHHHHHHHHCCCccCcCC-------CeeEEEEeCCHHHHHHHHHHHHHHhcC
Confidence 46778899999999999999999999999999999 87654 35778877 678899999999998864
No 53
>KOG2814|consensus
Probab=96.15 E-value=0.0068 Score=65.44 Aligned_cols=69 Identities=29% Similarity=0.401 Sum_probs=59.4
Q ss_pred eeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCC-eeEEEEEcChhHHHHHHHHHHHHHHHhh
Q psy13906 441 RMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-ERIVTVIGSMDSLFRAFSLITKNIEEFH 509 (914)
Q Consensus 441 ~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~-ervv~I~G~~e~V~~A~~~I~~~i~~~~ 509 (914)
..-+++++...+.|||++|.+.++|++||+|+|.++.+.+. +.++.+.+..++|.+|..+|..+|.+..
T Consensus 58 ~~si~v~s~~~~~lig~~g~trkkle~Etq~~i~lp~p~~n~~~i~i~~~~~~~V~~a~~Ri~~~ids~r 127 (345)
T KOG2814|consen 58 SSSILVRSSFIGWLIGKQGKTRKKLEEETQTNIFLPRPNTNKEEIKIIGISRNCVIQALERIAKLIDSDR 127 (345)
T ss_pred hhhhhhhHHHhhhhhcccchHHHHHHHhhccceEccCCCCCcceEEEeehhHHHHHHHHHHHHHHHHhhh
Confidence 44578899999999999999999999999999999988744 4555555679999999999999998754
No 54
>COG0195 NusA Transcription elongation factor [Transcription]
Probab=96.13 E-value=0.0049 Score=62.89 Aligned_cols=95 Identities=28% Similarity=0.387 Sum_probs=65.6
Q ss_pred CcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhh-hccccCCCCCCCcceE
Q psy13906 3 GKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHK-NQNKHLGGNGESQLIQ 81 (914)
Q Consensus 3 s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~-~~~~~~~~~~~~~~~~ 81 (914)
.+.+|..||++|.+|+.|.++.|-+|.|-..+ .+- ...|...+..... .... ...+...
T Consensus 84 ~d~vG~~iG~~G~rvk~i~~eLgekIdVVe~s-----------~d~----~~fI~nal~Pa~v~~V~~-----~~~d~~~ 143 (190)
T COG0195 84 IDPVGACIGKRGSRVKAVSEELGEKIDVVEWS-----------EDP----AEFIKNALAPAEVLSVNI-----KEDDGHV 143 (190)
T ss_pred cCchhhhccCCChHHHHHHHHhCCceEEEEeC-----------CCH----HHHHHHhcCcceEeEEEE-----EeCCCcE
Confidence 45789999999999999999999888885532 111 1122222211100 0000 0001227
Q ss_pred EEEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 82 LRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 82 ~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
..+.||.++.+..|||+|.+++-+.+-||-++.+..
T Consensus 144 ~~v~V~~~~~~~aIGk~G~Nvrla~~Ltg~~i~I~~ 179 (190)
T COG0195 144 AIVVVPPDQLSLAIGKGGQNVRLASQLTGWEIDIET 179 (190)
T ss_pred EEEEECHHHHhhccCcccHHHHHHHHHhCCEEEEEe
Confidence 888999999999999999999999999999998854
No 55
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.017 Score=68.25 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=73.3
Q ss_pred EEEEEcCh-----hHHHHHH---HHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcC
Q psy13906 39 IVTVIGSM-----DSLFRAF---SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSG 110 (914)
Q Consensus 39 vV~I~G~~-----e~V~~A~---~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sg 110 (914)
-|.|.|-. +++.+|+ ..|+..+.+....... ...........+.|+.+.++-+||++|.+|++|.++||
T Consensus 506 DiKi~Git~eim~~AL~QAk~aRlhIL~~M~~ai~~pr~---els~~aPri~t~~i~~dKI~dvIG~gGk~I~~I~eetg 582 (692)
T COG1185 506 DIKIKGITKEIMKKALEQAKGARLHILIVMNEAISEPRK---ELSPYAPRIETIKIDPDKIRDVIGPGGKTIKAITEETG 582 (692)
T ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhccCCceEEEccCHHHHhhccCCcccchhhhhhhhC
Confidence 35666663 3444444 4555555544332110 11122355778999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCceEEEecCH-HHHHHHHHHHHHHhccC
Q psy13906 111 ASVYVASDMLPNSTEREVNIKGVP-DAVTQAIYQICLIMVDS 151 (914)
Q Consensus 111 a~I~v~~~~~~~~~dr~V~I~G~~-~~V~~A~~~I~~~l~~~ 151 (914)
++|.+. ++..|.|.+.. +.+.+|+..|..+.++.
T Consensus 583 ~~Idie-------ddGtv~i~~s~~~~~~~ak~~I~~i~~e~ 617 (692)
T COG1185 583 VKIDIE-------DDGTVKIAASDGESAKKAKERIEAITREV 617 (692)
T ss_pred cEEEec-------CCCcEEEEecchHHHHHHHHHHHHHHhhc
Confidence 999995 36789998876 78889999999988653
No 56
>KOG1588|consensus
Probab=96.02 E-value=0.053 Score=57.26 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=55.4
Q ss_pred CcceEEEEEecC------CccceeeccCCchHHHHHhhcCceEEEccCCCCC-----------------CC--cceEEEe
Q psy13906 522 SQLIQLRLIVPA------SQCGSIIGKGGSQIKTIRETSGASVYVASDMLPN-----------------ST--EREVNIK 576 (914)
Q Consensus 522 ~~~~~~~l~VP~------~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~-----------------~~--er~V~I~ 576 (914)
....+.+|.||- ++||+|+|++|.++|+|+++|||+|.|-....-. +. --.|+..
T Consensus 89 ~vk~~~Kv~vPv~~yP~fNFVGRILGPrGnSlkrLe~eTgCki~IrGrgSmrD~~KEE~lR~~p~yeHL~epLHVlIe~~ 168 (259)
T KOG1588|consen 89 PVKLTEKVLVPVKEYPKFNFVGRILGPRGNSLKRLEEETGCKIMIRGRGSMRDKAKEEELRGDPGYEHLNEPLHVLIETE 168 (259)
T ss_pred ceeEEEEEEeccCCCCCCccccccccCCcchHHHHHHHHCCeEEEecCCcccchHHHHHhhcCcchHHhCCCcEEEEEEe
Confidence 445778899984 5789999999999999999999999997632211 11 2357777
Q ss_pred cCHHHHH----HHHHHHHHHhcc
Q psy13906 577 GVPDAVT----QAIYQICLIMVD 595 (914)
Q Consensus 577 G~~e~V~----~A~~~I~~~l~e 595 (914)
.+++.+. .|++.|.++|.-
T Consensus 169 ~p~~ea~~rl~~AleeI~klL~P 191 (259)
T KOG1588|consen 169 APPAEAYARLAYALEEIKKLLVP 191 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC
Confidence 8777654 478888888744
No 57
>KOG4369|consensus
Probab=96.02 E-value=0.0043 Score=75.31 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=64.0
Q ss_pred cCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 703 QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 778 (914)
Q Consensus 703 ~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~ 778 (914)
........+.+|.....+|||++|+||+.+|..|||.|.|.+-.+. .-.+|.+++.|.++.++.|..+|...|.
T Consensus 1336 ~~~~~~~k~~~P~~a~SRVig~ggsnVna~r~~tga~ielekmq~~--Nqaers~~~kg~p~~~r~a~~~I~~~i~ 1409 (2131)
T KOG4369|consen 1336 QVPANQGKGDGPLYASSRVIGDGGSNVNAARLGTGALIELEKMQPD--NQAERSKAPKGRPPSQRVATSPIGLPII 1409 (2131)
T ss_pred cCcccccccccchhhhhhhhccCcchhhhHhhccceEEehhhcCCc--cchhhhcccCCCChhhhhhhccccceee
Confidence 3455567889999999999999999999999999999999984322 3468999999999999999999988874
No 58
>KOG1588|consensus
Probab=95.97 E-value=0.023 Score=59.86 Aligned_cols=42 Identities=36% Similarity=0.554 Sum_probs=37.6
Q ss_pred ccccceeecccCcc------eEeEEEeCCchhHHHHHHHhCCeEEeeC
Q psy13906 436 TGVQRRMRHIMQGK------EVGSIIGKSGETVKKLREESGSKIYISD 477 (914)
Q Consensus 436 ~~~~~~~ri~vp~~------~vg~IIGk~G~~Ik~I~~etga~I~i~~ 477 (914)
+.+.++.||+||.+ .||+|+|.+|.++|+|+++|+|+|-|--
T Consensus 88 ~~vk~~~Kv~vPv~~yP~fNFVGRILGPrGnSlkrLe~eTgCki~IrG 135 (259)
T KOG1588|consen 88 KPVKLTEKVLVPVKEYPKFNFVGRILGPRGNSLKRLEEETGCKIMIRG 135 (259)
T ss_pred CceeEEEEEEeccCCCCCCccccccccCCcchHHHHHHHHCCeEEEec
Confidence 44778889999876 6999999999999999999999999963
No 59
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.024 Score=67.12 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=74.1
Q ss_pred eEEEEEcChhH--------HHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhc
Q psy13906 483 RIVTVIGSMDS--------LFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETS 554 (914)
Q Consensus 483 rvv~I~G~~e~--------V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~t 554 (914)
--+.|.|-... ...|+..|+..+.+.-..+.... ....+....+.|+....+-+||++|.+|++|.++|
T Consensus 505 MDiKi~Git~eim~~AL~QAk~aRlhIL~~M~~ai~~pr~el---s~~aPri~t~~i~~dKI~dvIG~gGk~I~~I~eet 581 (692)
T COG1185 505 MDIKIKGITKEIMKKALEQAKGARLHILIVMNEAISEPRKEL---SPYAPRIETIKIDPDKIRDVIGPGGKTIKAITEET 581 (692)
T ss_pred eeeeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hccCCceEEEccCHHHHhhccCCcccchhhhhhhh
Confidence 34778886322 23334455555554332221111 11235667889999999999999999999999999
Q ss_pred CceEEEccCCCCCCCcceEEEecCH-HHHHHHHHHHHHHhccC
Q psy13906 555 GASVYVASDMLPNSTEREVNIKGVP-DAVTQAIYQICLIMVDS 596 (914)
Q Consensus 555 ga~I~v~~~~~p~~~er~V~I~G~~-e~V~~A~~~I~~~l~e~ 596 (914)
||+|.+..+ -.|.|.++. +.+.+|+..|..+.++-
T Consensus 582 g~~Idiedd-------Gtv~i~~s~~~~~~~ak~~I~~i~~e~ 617 (692)
T COG1185 582 GVKIDIEDD-------GTVKIAASDGESAKKAKERIEAITREV 617 (692)
T ss_pred CcEEEecCC-------CcEEEEecchHHHHHHHHHHHHHHhhc
Confidence 999998743 578999877 77889999999999764
No 60
>KOG2814|consensus
Probab=95.57 E-value=0.021 Score=61.73 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=60.0
Q ss_pred ceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHHHH
Q psy13906 706 QITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSVELLR 781 (914)
Q Consensus 706 ~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G-~~~~v~~A~~li~~~i~~~~ 781 (914)
.....+.|++.++|.|||++|.+.+.|+++|+++|.+|+..+ ....|+|+| ..++|..|...|...|...+
T Consensus 56 ~~~~si~v~s~~~~~lig~~g~trkkle~Etq~~i~lp~p~~-----n~~~i~i~~~~~~~V~~a~~Ri~~~ids~r 127 (345)
T KOG2814|consen 56 DFSSSILVRSSFIGWLIGKQGKTRKKLEEETQTNIFLPRPNT-----NKEEIKIIGISRNCVIQALERIAKLIDSDR 127 (345)
T ss_pred cchhhhhhhHHHhhhhhcccchHHHHHHHhhccceEccCCCC-----CcceEEEeehhHHHHHHHHHHHHHHHHhhh
Confidence 345578999999999999999999999999999999998652 345566665 78999999999999987666
No 61
>PRK00106 hypothetical protein; Provisional
Probab=95.34 E-value=0.038 Score=65.24 Aligned_cols=66 Identities=18% Similarity=0.440 Sum_probs=54.8
Q ss_pred CCceEEEEEecC-ccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPN-ELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSV 777 (914)
Q Consensus 704 ~~~~~~~~~vp~-~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G-~~~~v~~A~~li~~~i 777 (914)
....+..|.+|+ ++-|+||||.|.||+.+...||+.|.|++. ...|+|+| +|---+.|+.-+..+|
T Consensus 222 ~e~tvs~v~lp~demkGriIGreGrNir~~E~~tGvdliiddt--------p~~v~lS~fdpvRReiAr~~le~Li 289 (535)
T PRK00106 222 TEQTITTVHLPDDNMKGRIIGREGRNIRTLESLTGIDVIIDDT--------PEVVVLSGFDPIRREIARMTLESLI 289 (535)
T ss_pred hhheeeeEEcCChHhhcceeCCCcchHHHHHHHhCceEEEcCC--------CCeEEEeCCChHHHHHHHHHHHHHH
Confidence 345567899999 567999999999999999999999999943 35688999 7888888887777666
No 62
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.34 E-value=0.036 Score=65.73 Aligned_cols=66 Identities=20% Similarity=0.454 Sum_probs=54.6
Q ss_pred CCceEEEEEecC-ccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPN-ELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSV 777 (914)
Q Consensus 704 ~~~~~~~~~vp~-~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G-~~~~v~~A~~li~~~i 777 (914)
....+..|.+|+ ++-|+||||.|-||+.+...||+.|.|++. ...|+|++ +|---+.|+.-|..+|
T Consensus 201 ~e~~~~~v~lp~d~~kgriigreGrnir~~e~~tgvd~iiddt--------p~~v~ls~fdp~rreia~~~l~~li 268 (514)
T TIGR03319 201 AETTVSVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDDT--------PEAVILSGFDPVRREIARMALEKLI 268 (514)
T ss_pred hhheeeeEEcCChhhhccccCCCcchHHHHHHHhCceEEEcCC--------CCeEEecCCchHHHHHHHHHHHHHH
Confidence 345567899999 566999999999999999999999999942 35688998 7877788887777666
No 63
>PF14611 SLS: Mitochondrial inner-membrane-bound regulator
Probab=95.27 E-value=0.51 Score=49.44 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=89.8
Q ss_pred CcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 3 GKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 3 s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
....-++...+|..++.|-...||+|.+.. ++..|.|+|++..+..+...|.+++... .+.
T Consensus 34 ~~~~~LLl~~~~~~L~~l~~~~~~~I~~~~---~~~~i~I~g~k~~~~~i~~~i~~~l~~i----------------~~~ 94 (210)
T PF14611_consen 34 PDEFFLLLTGNGRILENLAARNGAKIEVSR---SENRIRITGTKSTAEYIEASINEILSNI----------------RTE 94 (210)
T ss_pred chheeeeecCCchHHHHHHHhcCceEEEec---CCcEEEEEccHHHHHHHHHHHHHHHhhc----------------EEE
Confidence 345567889999999999888899999977 5669999999999999999999888663 344
Q ss_pred EEEeeccccceee----ccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEe-----cCHHHHHHHHHHHHHHhc
Q psy13906 83 RLIVPASQCGSII----GKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIK-----GVPDAVTQAIYQICLIMV 149 (914)
Q Consensus 83 ~l~Vp~~~vg~II----Gk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~-----G~~~~V~~A~~~I~~~l~ 149 (914)
.+.++.-....-. -.....++.|++.|++.|...++ +..+.|. -....+..|...+...+.
T Consensus 95 ~i~l~~~~~~~~~~~~~~~~~~~l~~i~~~t~~~ie~~~~------~~~~~i~~~~~~~~~~~~~~a~RlL~~a~~ 164 (210)
T PF14611_consen 95 EIDLSPIISKHSEKKNSQFTPDLLEEIQKLTNVYIEKNPD------GNKLKISWLASPENEKRADRAKRLLLWALD 164 (210)
T ss_pred EEecchhhhhhcccccccccHHHHHHHHHHHcEEEEECCC------CCeEEEEEEeeccccchHHHHHHHHHHhcc
Confidence 4444432111111 12467899999999999988653 3344444 456788889988888775
No 64
>PRK12704 phosphodiesterase; Provisional
Probab=95.18 E-value=0.039 Score=65.54 Aligned_cols=65 Identities=22% Similarity=0.460 Sum_probs=52.5
Q ss_pred CceEEEEEecC-ccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q psy13906 705 NQITKEMTVPN-ELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSV 777 (914)
Q Consensus 705 ~~~~~~~~vp~-~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G-~~~~v~~A~~li~~~i 777 (914)
...+..|.+|+ ++-|+||||.|-||+.+...||+.|.|++. ...|+|+| ++---+.|+.-++.++
T Consensus 208 e~~~~~v~lp~d~mkgriigreGrnir~~e~~tgvd~iiddt--------p~~v~ls~~~~~rre~a~~~l~~l~ 274 (520)
T PRK12704 208 ETTVSVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDDT--------PEAVILSGFDPIRREIARLALEKLV 274 (520)
T ss_pred hhceeeeecCCchhhcceeCCCcchHHHHHHHhCCeEEEcCC--------CCeEEEecCChhhHHHHHHHHHHHH
Confidence 45566789999 567999999999999999999999999942 35688999 6766667776666554
No 65
>COG0195 NusA Transcription elongation factor [Transcription]
Probab=95.18 E-value=0.032 Score=57.01 Aligned_cols=100 Identities=26% Similarity=0.396 Sum_probs=67.3
Q ss_pred cccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCc
Q psy13906 444 HIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQ 523 (914)
Q Consensus 444 i~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~ 523 (914)
+.+-.+.+|..||++|++|+.|+++.|=+|.|-.-+. +- ...|..++.-..-. .-... ...
T Consensus 80 ~~~~~d~vG~~iG~~G~rvk~i~~eLgekIdVVe~s~-----------d~----~~fI~nal~Pa~v~-~V~~~---~~d 140 (190)
T COG0195 80 NVVKIDPVGACIGKRGSRVKAVSEELGEKIDVVEWSE-----------DP----AEFIKNALAPAEVL-SVNIK---EDD 140 (190)
T ss_pred eecCcCchhhhccCCChHHHHHHHHhCCceEEEEeCC-----------CH----HHHHHHhcCcceEe-EEEEE---eCC
Confidence 4455678999999999999999999997777753221 11 11222222210000 00000 001
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEcc
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 562 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~ 562 (914)
.....+.||.++.+..|||+|.+++-+.+-||-++.+..
T Consensus 141 ~~~~~v~V~~~~~~~aIGk~G~Nvrla~~Ltg~~i~I~~ 179 (190)
T COG0195 141 GHVAIVVVPPDQLSLAIGKGGQNVRLASQLTGWEIDIET 179 (190)
T ss_pred CcEEEEEECHHHHhhccCcccHHHHHHHHHhCCEEEEEe
Confidence 126788899999999999999999999999999998865
No 66
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=95.16 E-value=0.044 Score=58.46 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=52.8
Q ss_pred EEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHH
Q psy13906 709 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGT-PDAIALAQYLINMSVE 778 (914)
Q Consensus 709 ~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~-~~~v~~A~~li~~~i~ 778 (914)
..+.||.++++++||++|.+|+.|.+.+++.|.|.. +..|.|++. .++++.|+.+|+..-+
T Consensus 147 ~~~~V~~~~i~~lig~~g~~i~~l~~~~~~~I~ig~---------NG~VwI~~~~~~~~~~a~~~I~~~e~ 208 (235)
T PRK04163 147 TIVEIKPVKVPRVIGKKGSMINMLKEETGCDIIVGQ---------NGRIWIKGPDEEDEEIAIEAIKKIER 208 (235)
T ss_pred EEEEECHHHHHhhcCCCChhHhhhhhhhCcEEEEcC---------CcEEEEeeCCHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999983 256888885 5689999999987644
No 67
>PF14611 SLS: Mitochondrial inner-membrane-bound regulator
Probab=95.03 E-value=0.51 Score=49.39 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=94.7
Q ss_pred cccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCc
Q psy13906 444 HIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQ 523 (914)
Q Consensus 444 i~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~ 523 (914)
+.++....-.+...+|..++.|....|++|.+... +..|.|+|++..+..+...|.+++...
T Consensus 30 v~l~~~~~~LLl~~~~~~L~~l~~~~~~~I~~~~~---~~~i~I~g~k~~~~~i~~~i~~~l~~i--------------- 91 (210)
T PF14611_consen 30 VWLQPDEFFLLLTGNGRILENLAARNGAKIEVSRS---ENRIRITGTKSTAEYIEASINEILSNI--------------- 91 (210)
T ss_pred EEecchheeeeecCCchHHHHHHHhcCceEEEecC---CcEEEEEccHHHHHHHHHHHHHHHhhc---------------
Confidence 33447778899999999999998888999999765 457999999999999999999998764
Q ss_pred ceEEEEEecCCccceee----ccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEe-----cCHHHHHHHHHHHHHHhc
Q psy13906 524 LIQLRLIVPASQCGSII----GKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIK-----GVPDAVTQAIYQICLIMV 594 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~II----GkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~-----G~~e~V~~A~~~I~~~l~ 594 (914)
.+..+.++.-.--.-. -.....++.|++.|++.|+..++. ..+.|. -....++.|++.+...+.
T Consensus 92 -~~~~i~l~~~~~~~~~~~~~~~~~~~l~~i~~~t~~~ie~~~~~------~~~~i~~~~~~~~~~~~~~a~RlL~~a~~ 164 (210)
T PF14611_consen 92 -RTEEIDLSPIISKHSEKKNSQFTPDLLEEIQKLTNVYIEKNPDG------NKLKISWLASPENEKRADRAKRLLLWALD 164 (210)
T ss_pred -EEEEEecchhhhhhcccccccccHHHHHHHHHHHcEEEEECCCC------CeEEEEEEeeccccchHHHHHHHHHHhcc
Confidence 3445555533211111 124677899999999999976642 334444 467788899999998885
Q ss_pred cC
Q psy13906 595 DS 596 (914)
Q Consensus 595 e~ 596 (914)
..
T Consensus 165 ~~ 166 (210)
T PF14611_consen 165 YN 166 (210)
T ss_pred CC
Confidence 33
No 68
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of ribosomal rrn operons. During transcription of many other genes, NusA-induced RNAP pausing provides a mechanism for synchronizing transcription and translation . The N-terminal RNAP-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, S1, KH1 and KH2. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices.
Probab=94.96 E-value=0.029 Score=46.53 Aligned_cols=36 Identities=33% Similarity=0.580 Sum_probs=33.8
Q ss_pred eEEEEEecCccccccccCCcchHHHHHhhhCCEEEE
Q psy13906 707 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 742 (914)
Q Consensus 707 ~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i 742 (914)
....+.|+.+..|.+|||+|.+|+.+++.+|-+|.|
T Consensus 25 ~~~~v~V~~~~~~~aIGk~G~nI~~~~~l~~~~I~v 60 (61)
T cd02134 25 KRARVVVPDDQLGLAIGKGGQNVRLASKLLGEKIDI 60 (61)
T ss_pred cEEEEEECcccceeeECCCCHHHHHHHHHHCCCeEE
Confidence 577899999999999999999999999999998886
No 69
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.93 E-value=0.053 Score=64.32 Aligned_cols=67 Identities=18% Similarity=0.446 Sum_probs=54.8
Q ss_pred ccceEEEEEeccc-ccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHH
Q psy13906 259 QNQITKEMTVPNE-LIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSVE 333 (914)
Q Consensus 259 ~~~~~~~i~Ip~~-~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G-~~e~v~~A~~~I~~~ve 333 (914)
.+.....+.+|++ +-|+|||+.|.||+.++..|||.|.|.+ +...|+|++ +|---+-|+..|+.++.
T Consensus 201 ~e~~~~~v~lp~d~~kgriigreGrnir~~e~~tgvd~iidd--------tp~~v~ls~fdp~rreia~~~l~~li~ 269 (514)
T TIGR03319 201 AETTVSVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDD--------TPEAVILSGFDPVRREIARMALEKLIQ 269 (514)
T ss_pred hhheeeeEEcCChhhhccccCCCcchHHHHHHHhCceEEEcC--------CCCeEEecCCchHHHHHHHHHHHHHHH
Confidence 3445678889995 6699999999999999999999999975 235788888 77777888887777765
No 70
>PRK00106 hypothetical protein; Provisional
Probab=94.86 E-value=0.06 Score=63.60 Aligned_cols=67 Identities=18% Similarity=0.444 Sum_probs=54.6
Q ss_pred ccceEEEEEeccc-ccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHH
Q psy13906 259 QNQITKEMTVPNE-LIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSVE 333 (914)
Q Consensus 259 ~~~~~~~i~Ip~~-~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G-~~e~v~~A~~~I~~~ve 333 (914)
.+.....+.+|++ +.|+|||+.|.||+.++..|||.|.|.+ +...|+|+| +|---+-|+..++.++.
T Consensus 222 ~e~tvs~v~lp~demkGriIGreGrNir~~E~~tGvdliidd--------tp~~v~lS~fdpvRReiAr~~le~Li~ 290 (535)
T PRK00106 222 TEQTITTVHLPDDNMKGRIIGREGRNIRTLESLTGIDVIIDD--------TPEVVVLSGFDPIRREIARMTLESLIK 290 (535)
T ss_pred hhheeeeEEcCChHhhcceeCCCcchHHHHHHHhCceEEEcC--------CCCeEEEeCCChHHHHHHHHHHHHHHH
Confidence 3445678889995 6699999999999999999999999975 335788988 77777888877776664
No 71
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=94.76 E-value=0.05 Score=67.02 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=54.1
Q ss_pred ceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEec-CHHHHHHHHHHHHHHhcc
Q psy13906 79 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKG-VPDAVTQAIYQICLIMVD 150 (914)
Q Consensus 79 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G-~~~~V~~A~~~I~~~l~~ 150 (914)
.....+.||.+.++.+||++|.+||+|.+++|+.|.+.. +..|.|.+ ..+.+.+|..+|..+..+
T Consensus 553 p~~~~~~I~~~kI~~vIG~gg~~ik~I~~~~~~~idi~d-------~G~v~i~~~~~~~~~~a~~~I~~~~~~ 618 (693)
T PRK11824 553 PRIETIKIPPDKIRDVIGPGGKTIREITEETGAKIDIED-------DGTVKIAATDGEAAEAAKERIEGITAE 618 (693)
T ss_pred chheeecCCHHHHHHHhcCCchhHHHHHHHHCCccccCC-------CceEEEEcccHHHHHHHHHHHHHhccc
Confidence 345667789999999999999999999999999887632 56788887 578889999999887753
No 72
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=94.69 E-value=0.05 Score=67.01 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=54.2
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEec-CHHHHHHHHHHHHHHhcc
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKG-VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G-~~e~V~~A~~~I~~~l~e 595 (914)
+....+.||.+.++.+||+||.+||+|.++||+.|.+.. +-.|.|.+ ..+.+++|+..|..+..+
T Consensus 553 p~~~~~~I~~~kI~~vIG~gg~~ik~I~~~~~~~idi~d-------~G~v~i~~~~~~~~~~a~~~I~~~~~~ 618 (693)
T PRK11824 553 PRIETIKIPPDKIRDVIGPGGKTIREITEETGAKIDIED-------DGTVKIAATDGEAAEAAKERIEGITAE 618 (693)
T ss_pred chheeecCCHHHHHHHhcCCchhHHHHHHHHCCccccCC-------CceEEEEcccHHHHHHHHHHHHHhccc
Confidence 445677789999999999999999999999999887643 35688887 668888999999988854
No 73
>PRK12704 phosphodiesterase; Provisional
Probab=94.47 E-value=0.074 Score=63.19 Aligned_cols=66 Identities=20% Similarity=0.452 Sum_probs=54.0
Q ss_pred cceEEEEEeccc-ccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHH
Q psy13906 260 NQITKEMTVPNE-LIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSVE 333 (914)
Q Consensus 260 ~~~~~~i~Ip~~-~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G-~~e~v~~A~~~I~~~ve 333 (914)
+.....+.+|++ +.|+|||+.|.||+.++..|||.|.|.+ +...|.|+| ++-.-+.|+..++.++.
T Consensus 208 e~~~~~v~lp~d~mkgriigreGrnir~~e~~tgvd~iidd--------tp~~v~ls~~~~~rre~a~~~l~~l~~ 275 (520)
T PRK12704 208 ETTVSVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDD--------TPEAVILSGFDPIRREIARLALEKLVQ 275 (520)
T ss_pred hhceeeeecCCchhhcceeCCCcchHHHHHHHhCCeEEEcC--------CCCeEEEecCChhhHHHHHHHHHHHHh
Confidence 445678889985 6699999999999999999999999975 346888998 66676788888877664
No 74
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]
Probab=94.46 E-value=0.049 Score=54.84 Aligned_cols=67 Identities=22% Similarity=0.447 Sum_probs=48.2
Q ss_pred ceEEEEEecc------cccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHH
Q psy13906 261 QITKEMTVPN------ELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSVE 333 (914)
Q Consensus 261 ~~~~~i~Ip~------~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G-~~e~v~~A~~~I~~~ve 333 (914)
.++..++||. +|+|.|||..|.++++|++.|+|+|.|.... ..+...|.. +++....|.+-|..+|+
T Consensus 147 k~q~KiYIPV~eyPe~NFVGLliGPRG~Tlk~le~~s~akIaIRG~g------svKegk~ssd~p~~~~N~e~~lhcLI~ 220 (269)
T COG5176 147 KYQNKIYIPVQEYPESNFVGLLIGPRGSTLKQLERISRAKIAIRGSG------SVKEGKISSDTPESLKNAEAVLHCLIE 220 (269)
T ss_pred cccceEEeehhhCcccceeEEEecCCcchHHHHHHHhCCeEEEeccc------ccccCcccccCchhhhhhHHhHHHHhh
Confidence 3466777775 5999999999999999999999999997542 233444443 35666666665555554
No 75
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of ribosomal rrn operons. During transcription of many other genes, NusA-induced RNAP pausing provides a mechanism for synchronizing transcription and translation . The N-terminal RNAP-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, S1, KH1 and KH2. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices.
Probab=94.41 E-value=0.046 Score=45.34 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=33.3
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEe
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI 475 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i 475 (914)
..+.+.|+.+..|.+|||+|.+|+.+++.++-+|.|
T Consensus 25 ~~~~v~V~~~~~~~aIGk~G~nI~~~~~l~~~~I~v 60 (61)
T cd02134 25 KRARVVVPDDQLGLAIGKGGQNVRLASKLLGEKIDI 60 (61)
T ss_pred cEEEEEECcccceeeECCCCHHHHHHHHHHCCCeEE
Confidence 577889999999999999999999999999988876
No 76
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=94.04 E-value=0.12 Score=55.16 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=55.1
Q ss_pred EEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHHH
Q psy13906 264 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGT-PDAIALAQYLINMSVELL 335 (914)
Q Consensus 264 ~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~-~e~v~~A~~~I~~~ve~~ 335 (914)
..+.||.++++.+||++|.+|+.|.++++++|.|- .+..|.|.+. .+.+.+|+.+|+.+-++.
T Consensus 147 ~~~~V~~~~i~~lig~~g~~i~~l~~~~~~~I~ig---------~NG~VwI~~~~~~~~~~a~~~I~~~e~~~ 210 (235)
T PRK04163 147 TIVEIKPVKVPRVIGKKGSMINMLKEETGCDIIVG---------QNGRIWIKGPDEEDEEIAIEAIKKIEREA 210 (235)
T ss_pred EEEEECHHHHHhhcCCCChhHhhhhhhhCcEEEEc---------CCcEEEEeeCCHHHHHHHHHHHHHHHhhh
Confidence 67889999999999999999999999999999996 3478999886 568999999998877654
No 77
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=93.71 E-value=0.11 Score=58.27 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=65.0
Q ss_pred cceeeeeccCchhHHHHHHHh-CCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 4 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I~~et-ga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
+-+|..||++|.+|+.|.++. |-+|+|-..+. ++. .+|...+....-. .. . .........
T Consensus 243 Dpvga~vG~~G~ri~~i~~el~ge~Idiv~~s~---------d~~------~fi~nal~Pa~v~--~v-~-i~~~~~~~~ 303 (341)
T TIGR01953 243 DPVGACVGPKGSRIQAISKELNGEKIDIIEYSD---------DPA------EFIANALSPAKVI--SV-E-VLDEDKHSA 303 (341)
T ss_pred CcceeeECCCCchHHHHHHHhCCCeEEEEEcCC---------CHH------HHHHHhcCCceEE--EE-E-EEcCCCcEE
Confidence 458999999999999999998 88998855321 111 1111111110000 00 0 000113578
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
.+.||.++.+..|||+|.|++-..+-||.+|.+..
T Consensus 304 ~v~V~~~~~~~aIGk~G~Nv~la~~l~g~~IdI~s 338 (341)
T TIGR01953 304 EVVVPDDQLSLAIGKGGQNVRLASKLTGWNIDVKT 338 (341)
T ss_pred EEEEChHHcchhhcCCChhHHHHHHHhCCEEEEEe
Confidence 89999999999999999999999999999999864
No 78
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=93.49 E-value=0.15 Score=57.35 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=64.7
Q ss_pred cceeeeeccCchhHHHHHHHh-CCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 4 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I~~et-ga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
+-+|..||++|.+|+.|.++. |-+|+|-..+.+ + ..+|...+....-. . ..........
T Consensus 251 DPvGacIG~~G~rI~~I~~eL~gEkIDvI~~s~D---------~------~~fI~Nal~Pa~V~--~---V~i~~~~~~~ 310 (374)
T PRK12328 251 DPIGATVGVKGVRINAVSKELNGENIDCIEYSNV---------P------EIFIARALAPAIIS--S---VKIEEEEKKA 310 (374)
T ss_pred ChHHhhcCCCcchHHHHHHHhCCCeEEEEEcCCC---------H------HHHHHHhCCCceee--E---EEEcCCCcEE
Confidence 347899999999999999998 889988553211 1 11111111110000 0 0000113567
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
.+.||..+.+..|||+|.+++-..+-||.+|.+-.
T Consensus 311 ~V~V~~~qlslAIGk~GqNvrLA~~LtGwkIDI~s 345 (374)
T PRK12328 311 IVTLLSDQKSKAIGKNGINIRLASMLTGYEIELNE 345 (374)
T ss_pred EEEEChHHhhhhhcCCChhHHHHHHHhCCEEEEEE
Confidence 89999999999999999999999999999999964
No 79
>KOG4369|consensus
Probab=93.44 E-value=0.076 Score=65.18 Aligned_cols=77 Identities=10% Similarity=0.184 Sum_probs=66.8
Q ss_pred eEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhcccC
Q psy13906 707 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRANLNG 786 (914)
Q Consensus 707 ~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~~~~ 786 (914)
-..+...+..++.+||++.+++|+-|+..+++++.|+...| .+.|++++|.++-+..+.+..||...+....++...
T Consensus 781 aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsd---rtkdt~lSlacsggr~~vvelLl~~gankehrnvsD 857 (2131)
T KOG4369|consen 781 ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSD---RTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSD 857 (2131)
T ss_pred ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcc---cccCceEEEecCCCcchHHHHHHHhhccccccchhh
Confidence 35688899999999999999999999999999999998876 567899999999999999999999888766665544
No 80
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=93.27 E-value=0.14 Score=57.92 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=65.4
Q ss_pred cceeeeeccCchhHHHHHHHh-CCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 4 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I~~et-ga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
+-+|..||++|.+|+.|.++. |-+|+|-..+. ++ ..+|...+....-. ... ........+
T Consensus 245 DpvGa~iG~~G~rI~~i~~el~gekIdiv~~s~---------d~------~~fi~nal~Pa~v~--~v~--i~~~~~~~~ 305 (362)
T PRK12327 245 DAKGACVGPKGQRVQNIVSELKGEKIDIIDWSE---------DP------AEFVANALSPAKVV--SVE--VDDEEEKAA 305 (362)
T ss_pred CchheeECCCChhHHHHHHHhCCCeEEEEEcCC---------CH------HHHHHHhCCCceEE--EEE--EEcCCCcEE
Confidence 458999999999999999998 89998855321 11 11111111111000 000 000113568
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
.+.||..+.+..|||+|.||+--.+-||.+|.+..
T Consensus 306 ~v~V~~~~~~~AIGk~G~Nv~la~~L~~~~idi~s 340 (362)
T PRK12327 306 RVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIKS 340 (362)
T ss_pred EEEEChhhcchhhcCCChhHHHHHHHHCCeeeEEE
Confidence 89999999999999999999999999999999865
No 81
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=93.15 E-value=0.22 Score=55.86 Aligned_cols=96 Identities=23% Similarity=0.380 Sum_probs=64.5
Q ss_pred ceEeEEEeCCchhHHHHHHHh-CCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEE
Q psy13906 449 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 527 (914)
Q Consensus 449 ~~vg~IIGk~G~~Ik~I~~et-ga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~ 527 (914)
+-+|..||++|.+|+.|.++. |=+|.|-.-+.. + ...|...+.-..-..-.-. .......
T Consensus 243 Dpvga~vG~~G~ri~~i~~el~ge~Idiv~~s~d---------~------~~fi~nal~Pa~v~~v~i~----~~~~~~~ 303 (341)
T TIGR01953 243 DPVGACVGPKGSRIQAISKELNGEKIDIIEYSDD---------P------AEFIANALSPAKVISVEVL----DEDKHSA 303 (341)
T ss_pred CcceeeECCCCchHHHHHHHhCCCeEEEEEcCCC---------H------HHHHHHhcCCceEEEEEEE----cCCCcEE
Confidence 468999999999999999999 778877543211 0 0111111111000000000 0012467
Q ss_pred EEEecCCccceeeccCCchHHHHHhhcCceEEEccC
Q psy13906 528 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD 563 (914)
Q Consensus 528 ~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~ 563 (914)
.+.||..+.+..|||+|.+++-..+-||.+|.+..+
T Consensus 304 ~v~V~~~~~~~aIGk~G~Nv~la~~l~g~~IdI~s~ 339 (341)
T TIGR01953 304 EVVVPDDQLSLAIGKGGQNVRLASKLTGWNIDVKTE 339 (341)
T ss_pred EEEEChHHcchhhcCCChhHHHHHHHhCCEEEEEeC
Confidence 899999999999999999999999999999998653
No 82
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=93.10 E-value=0.15 Score=57.23 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=36.6
Q ss_pred eEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCC
Q psy13906 707 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSE 747 (914)
Q Consensus 707 ~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~ 747 (914)
....+.||.+..+..|||+|.|++-..+.||.+|+|-.-.+
T Consensus 308 ~~~~V~V~~~qlslAIGk~GqNvrLA~~LtGwkIDI~s~~~ 348 (374)
T PRK12328 308 KKAIVTLLSDQKSKAIGKNGINIRLASMLTGYEIELNEIGS 348 (374)
T ss_pred cEEEEEEChHHhhhhhcCCChhHHHHHHHhCCEEEEEECCC
Confidence 35688999999999999999999999999999999976543
No 83
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=92.61 E-value=0.27 Score=55.59 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=65.2
Q ss_pred ceEeEEEeCCchhHHHHHHHh-CCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEE
Q psy13906 449 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 527 (914)
Q Consensus 449 ~~vg~IIGk~G~~Ik~I~~et-ga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~ 527 (914)
+-+|..||++|.+|+.|.++. |-+|.|-.-+.. ....|...+.-..-..-... .......
T Consensus 245 DpvGa~iG~~G~rI~~i~~el~gekIdiv~~s~d---------------~~~fi~nal~Pa~v~~v~i~----~~~~~~~ 305 (362)
T PRK12327 245 DAKGACVGPKGQRVQNIVSELKGEKIDIIDWSED---------------PAEFVANALSPAKVVSVEVD----DEEEKAA 305 (362)
T ss_pred CchheeECCCChhHHHHHHHhCCCeEEEEEcCCC---------------HHHHHHHhCCCceEEEEEEE----cCCCcEE
Confidence 568999999999999999999 888887543211 01111121111000000000 0113467
Q ss_pred EEEecCCccceeeccCCchHHHHHhhcCceEEEccC
Q psy13906 528 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD 563 (914)
Q Consensus 528 ~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~ 563 (914)
.+.||..+.+..|||+|.+++-..+-||.+|.+..+
T Consensus 306 ~v~V~~~~~~~AIGk~G~Nv~la~~L~~~~idi~s~ 341 (362)
T PRK12327 306 RVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIKSE 341 (362)
T ss_pred EEEEChhhcchhhcCCChhHHHHHHHHCCeeeEEEH
Confidence 899999999999999999999999999999998764
No 84
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=92.58 E-value=0.2 Score=57.21 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=64.5
Q ss_pred cceeeeeccCchhHHHHHHHh-CCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 4 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I~~et-ga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
+-+|+.||++|.+|+.|.++. |-+|+|-..+. ++ ..+|...+....-..-. .........
T Consensus 277 DPvGacVG~kG~RI~~I~~eL~gEkIDVI~ys~---------Dp------~~fI~NaLsPA~V~~V~----i~~~~~k~a 337 (449)
T PRK12329 277 DPVGACIGARGSRIQAVVNELRGEKIDVIRWSP---------DP------ATYIANALSPARVDEVR----LVDPEGRHA 337 (449)
T ss_pred ChhhccCCCCcchHHHHHHHhCCCeEEEEEcCC---------CH------HHHHHHhcCCceeeEEE----EEcCCCcEE
Confidence 447999999999999999998 88998855321 11 11111111111000000 000113457
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
.+.||.++.+..|||+|.||+-..+-||.+|.+..
T Consensus 338 ~V~V~~~qlslAIGK~GqNvrLAs~Ltg~~idI~s 372 (449)
T PRK12329 338 HVLVPPDQLSLAIGKEGQNVRLAARLTGWKIDIKD 372 (449)
T ss_pred EEEEChHhcchhhcCCChhHHHHHHHHCCEecccc
Confidence 89999999999999999999999999999998854
No 85
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]
Probab=92.53 E-value=0.15 Score=51.42 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=47.9
Q ss_pred ceEEEEEeec------cccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecC-HHHHHHHHHHHHHHhccC
Q psy13906 79 LIQLRLIVPA------SQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIMVDS 151 (914)
Q Consensus 79 ~~~~~l~Vp~------~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~-~~~V~~A~~~I~~~l~~~ 151 (914)
.++-++.||- +++|.|||++|.|.|++++.|+|+|.+-... .++-..+..+ ++....|-..|.+++.+.
T Consensus 147 k~q~KiYIPV~eyPe~NFVGLliGPRG~Tlk~le~~s~akIaIRG~g----svKegk~ssd~p~~~~N~e~~lhcLI~ad 222 (269)
T COG5176 147 KYQNKIYIPVQEYPESNFVGLLIGPRGSTLKQLERISRAKIAIRGSG----SVKEGKISSDTPESLKNAEAVLHCLIEAD 222 (269)
T ss_pred cccceEEeehhhCcccceeEEEecCCcchHHHHHHHhCCeEEEeccc----ccccCcccccCchhhhhhHHhHHHHhhcc
Confidence 4555666663 5899999999999999999999999996521 1222333333 566666666666666543
No 86
>KOG1067|consensus
Probab=92.52 E-value=0.41 Score=55.28 Aligned_cols=97 Identities=26% Similarity=0.246 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcc
Q psy13906 492 DSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTER 571 (914)
Q Consensus 492 e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er 571 (914)
+++.+|...=..+++.+....+.+.+......++...|.|+.+....+||.+|...|.|..+||+.-.++. .
T Consensus 564 eal~~a~~ar~~Il~~m~k~i~~Pr~~~~~y~P~~~tlkv~~sk~~~lIGp~G~~~kki~~EtGai~~vDe--------~ 635 (760)
T KOG1067|consen 564 EALQKAREARLQILDIMEKNINSPRGSDKEYSPVLETLKVSPSKRATLIGPGGVLKKKIEVETGAISQVDE--------G 635 (760)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCCcccCccccCceeeEEeecchhhheeecCccceeeeEeeeccceeeecC--------c
Confidence 55555555544555544444444444445566788899999999999999999999999999996555443 4
Q ss_pred eEEEec-CHHHHHHHHHHHHHHhccC
Q psy13906 572 EVNIKG-VPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 572 ~V~I~G-~~e~V~~A~~~I~~~l~e~ 596 (914)
.+.|.- ++...++|++.|..++.+.
T Consensus 636 t~~i~A~~~~am~~Ak~~I~~i~~~~ 661 (760)
T KOG1067|consen 636 TFSIFAPTQAAMEEAKEFIDGIIKDD 661 (760)
T ss_pred eEEEEecCHHHHHHHHHHHHHHhcCc
Confidence 677666 5677899999999998774
No 87
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=92.01 E-value=0.23 Score=56.68 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=63.7
Q ss_pred ceEeEEEeCCchhHHHHHHHh-CCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEE
Q psy13906 449 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 527 (914)
Q Consensus 449 ~~vg~IIGk~G~~Ik~I~~et-ga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~ 527 (914)
+-+|..||++|.+|+.|.++. |=+|.|-.-+.. + ...|...+.-..-..-... . ......
T Consensus 277 DPvGacVG~kG~RI~~I~~eL~gEkIDVI~ys~D---------p------~~fI~NaLsPA~V~~V~i~--~--~~~k~a 337 (449)
T PRK12329 277 DPVGACIGARGSRIQAVVNELRGEKIDVIRWSPD---------P------ATYIANALSPARVDEVRLV--D--PEGRHA 337 (449)
T ss_pred ChhhccCCCCcchHHHHHHHhCCCeEEEEEcCCC---------H------HHHHHHhcCCceeeEEEEE--c--CCCcEE
Confidence 568999999999999999999 878877543211 0 1111111111000000000 0 012356
Q ss_pred EEEecCCccceeeccCCchHHHHHhhcCceEEEcc
Q psy13906 528 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 562 (914)
Q Consensus 528 ~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~ 562 (914)
.+.||..+.+..|||+|.+++-..+-||.+|.|..
T Consensus 338 ~V~V~~~qlslAIGK~GqNvrLAs~Ltg~~idI~s 372 (449)
T PRK12329 338 HVLVPPDQLSLAIGKEGQNVRLAARLTGWKIDIKD 372 (449)
T ss_pred EEEEChHhcchhhcCCChhHHHHHHHHCCEecccc
Confidence 89999999999999999999999999999998865
No 88
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=91.83 E-value=0.29 Score=57.25 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=64.8
Q ss_pred cceeeeeccCchhHHHHHHHh-CCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 4 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I~~et-ga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
+-+|+.||++|.+|+.|.++. |-+|.|-..+.+ +. .+|...+....-. . -........+
T Consensus 245 Dpvga~vG~~G~ri~~i~~el~ge~Idiv~~s~d---------~~------~fi~nal~pa~v~--~---v~~~~~~~~~ 304 (470)
T PRK09202 245 DPVGACVGMRGSRIQAISNELGGEKIDIILWSDD---------PA------QFIINALSPAEVS--S---VVVDEDEHSA 304 (470)
T ss_pred ChhHccCCCCCchHHHHHHHhCCCeEEEEEcCCC---------HH------HHHHHhCCCCEEE--E---EEEeCCCCEE
Confidence 347999999999999999998 899988654211 11 1111111110000 0 0000012478
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
.+.||..+.+..|||+|.||+-..+-||.+|.+..
T Consensus 305 ~v~V~~~~~~~AIGk~G~Nvrla~~l~g~~idi~~ 339 (470)
T PRK09202 305 DVVVPDDQLSLAIGKNGQNVRLASKLTGWKIDIMT 339 (470)
T ss_pred EEEECcchHHHhhCCCCeeHHHHHHHHCCeEEEEE
Confidence 89999999999999999999999999999998865
No 89
>PRK00468 hypothetical protein; Provisional
Probab=91.56 E-value=0.18 Score=43.55 Aligned_cols=32 Identities=38% Similarity=0.522 Sum_probs=28.4
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhc
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETS 554 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~t 554 (914)
..+.++|.+..+.+|+||||+|.+|+.|+.--
T Consensus 28 ~~~~~~l~v~~~D~GrVIGk~Gr~i~AIRtvv 59 (75)
T PRK00468 28 QSVILELKVAPEDMGKVIGKQGRIAKAIRTVV 59 (75)
T ss_pred CeEEEEEEEChhhCcceecCCChhHHHHHHHH
Confidence 35788999999999999999999999998753
No 90
>PRK12705 hypothetical protein; Provisional
Probab=91.49 E-value=0.22 Score=58.62 Aligned_cols=65 Identities=15% Similarity=0.383 Sum_probs=46.0
Q ss_pred CCceEEEEEecCc-cccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPNE-LIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMS 776 (914)
Q Consensus 704 ~~~~~~~~~vp~~-~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G-~~~~v~~A~~li~~~ 776 (914)
....+..|.+|++ +-|+||||.|.||+.+...||+.|.|++.+ +.|+|++ ++.--+.|+..+..+
T Consensus 195 ~e~tvs~v~lp~demkGriIGreGrNir~~E~~tGvdliiddtp--------~~V~ls~fdp~rreia~~~l~~L 261 (508)
T PRK12705 195 SDLSVSVVPIPSDAMKGRIIGREGRNIRAFEGLTGVDLIIDDTP--------EAVVISSFNPIRREIARLTLEKL 261 (508)
T ss_pred hhheeeeeecCChHhhccccCccchhHHHHHHhhCCceEecCCc--------cchhhcccCccchHHHHHHHHHH
Confidence 3455667899985 569999999999999999999999999543 3355554 344444444444333
No 91
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]
Probab=91.04 E-value=0.23 Score=42.84 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=29.4
Q ss_pred CcceEEEEEecCCccceeeccCCchHHHHHhhc
Q psy13906 522 SQLIQLRLIVPASQCGSIIGKGGSQIKTIRETS 554 (914)
Q Consensus 522 ~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~t 554 (914)
+...+++|.+....+|+||||+|.+|+.|+.--
T Consensus 27 ~~~~~~~l~v~~~D~GkvIGk~GRti~AIRTll 59 (76)
T COG1837 27 EKTVTIELRVAPEDMGKVIGKQGRTIQAIRTLL 59 (76)
T ss_pred CCeEEEEEEECcccccceecCCChhHHHHHHHH
Confidence 456789999999999999999999999998753
No 92
>COG5166 Uncharacterized conserved protein [Function unknown]
Probab=91.01 E-value=0.48 Score=54.12 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=65.7
Q ss_pred eeeeccCchhHHHHHHHhCCeEEe--cCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEE
Q psy13906 7 GSIIGKSGETVKKLREESGSKIYI--SDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRL 84 (914)
Q Consensus 7 g~iIGk~G~~Ik~I~~etga~I~v--~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l 84 (914)
.+|-||+.-.+.+|++-..|.+.+ ....+.--.-.+.|..-+-++++..+... ...++.+
T Consensus 392 dFl~gkkngK~TrIm~~v~c~~~~~i~~~~gs~~~~~~~g~~~~F~k~~~~~~~E------------------Fpae~~f 453 (657)
T COG5166 392 DFLRGKKNGKATRIMKGVSCSELSSIVSSTGSIVETNGIGEKMSFSKKLSIPPTE------------------FPAEIAF 453 (657)
T ss_pred HHhccccCcchhhhhhhcccceeeEEEecCCcEEEEeccCcchhhHHHhcCCccc------------------CchheEE
Confidence 367788877799999999998444 33333322234455555555554333221 1446779
Q ss_pred EeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 85 IVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 85 ~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
.||...|..|||.+|..|++++.+.++.|.+..
T Consensus 454 ~i~e~~h~~IIgtgG~~iQ~~m~kh~v~i~f~n 486 (657)
T COG5166 454 IIMESGHEMIIGTGGIEIQENMVKHAVDIAFKN 486 (657)
T ss_pred EeecccceeeeccCchhhHHhhhhhhhhhhhhh
Confidence 999999999999999999999999999997753
No 93
>PRK12705 hypothetical protein; Provisional
Probab=90.92 E-value=0.27 Score=57.92 Aligned_cols=65 Identities=15% Similarity=0.386 Sum_probs=48.2
Q ss_pred cceEEEEEeccc-ccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q psy13906 260 NQITKEMTVPNE-LIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMSV 332 (914)
Q Consensus 260 ~~~~~~i~Ip~~-~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G-~~e~v~~A~~~I~~~v 332 (914)
+.....+.+|++ +.|+|||+.|.||+.++..||+.|.|.+. ...|+|++ ++.--+.|+..+..++
T Consensus 196 e~tvs~v~lp~demkGriIGreGrNir~~E~~tGvdliiddt--------p~~V~ls~fdp~rreia~~~l~~Li 262 (508)
T PRK12705 196 DLSVSVVPIPSDAMKGRIIGREGRNIRAFEGLTGVDLIIDDT--------PEAVVISSFNPIRREIARLTLEKLL 262 (508)
T ss_pred hheeeeeecCChHhhccccCccchhHHHHHHhhCCceEecCC--------ccchhhcccCccchHHHHHHHHHHH
Confidence 345677788885 55999999999999999999999999853 23455655 4555566666665555
No 94
>KOG1067|consensus
Probab=90.91 E-value=0.68 Score=53.56 Aligned_cols=97 Identities=27% Similarity=0.252 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCc
Q psy13906 47 DSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTER 126 (914)
Q Consensus 47 e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr 126 (914)
+++++|...-..+++......+.+.........+...+.|+.+....+||.+|...|+|..+||+.-.++ +.
T Consensus 564 eal~~a~~ar~~Il~~m~k~i~~Pr~~~~~y~P~~~tlkv~~sk~~~lIGp~G~~~kki~~EtGai~~vD--------e~ 635 (760)
T KOG1067|consen 564 EALQKAREARLQILDIMEKNINSPRGSDKEYSPVLETLKVSPSKRATLIGPGGVLKKKIEVETGAISQVD--------EG 635 (760)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCCcccCccccCceeeEEeecchhhheeecCccceeeeEeeeccceeeec--------Cc
Confidence 4555554443444433333333333444455677888999999999999999999999999999666553 56
Q ss_pred eEEEecC-HHHHHHHHHHHHHHhccC
Q psy13906 127 EVNIKGV-PDAVTQAIYQICLIMVDS 151 (914)
Q Consensus 127 ~V~I~G~-~~~V~~A~~~I~~~l~~~ 151 (914)
++.|... +...++|.+.|..++.+.
T Consensus 636 t~~i~A~~~~am~~Ak~~I~~i~~~~ 661 (760)
T KOG1067|consen 636 TFSIFAPTQAAMEEAKEFIDGIIKDD 661 (760)
T ss_pred eEEEEecCHHHHHHHHHHHHHHhcCc
Confidence 8888755 667788999998887653
No 95
>PRK02821 hypothetical protein; Provisional
Probab=90.59 E-value=0.25 Score=42.92 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=28.4
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcC
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSG 555 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tg 555 (914)
...++|.+..+.+|+||||+|.+|+.|+.--.
T Consensus 30 ~~~i~l~v~~~D~GrVIGk~Gr~i~AIRtlv~ 61 (77)
T PRK02821 30 GRTLEVRVHPDDLGKVIGRGGRTATALRTVVA 61 (77)
T ss_pred cEEEEEEEChhhCcceeCCCCchHHHHHHHHH
Confidence 46789999999999999999999999987644
No 96
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=90.50 E-value=0.38 Score=56.33 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=64.2
Q ss_pred ceEeEEEeCCchhHHHHHHHh-CCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEE
Q psy13906 449 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 527 (914)
Q Consensus 449 ~~vg~IIGk~G~~Ik~I~~et-ga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~ 527 (914)
+-+|..||++|.+|+.|.++. |=+|.|-.-+.. + ...|...+.-..-. .... ......+
T Consensus 245 Dpvga~vG~~G~ri~~i~~el~ge~Idiv~~s~d---------~------~~fi~nal~pa~v~-~v~~----~~~~~~~ 304 (470)
T PRK09202 245 DPVGACVGMRGSRIQAISNELGGEKIDIILWSDD---------P------AQFIINALSPAEVS-SVVV----DEDEHSA 304 (470)
T ss_pred ChhHccCCCCCchHHHHHHHhCCCeEEEEEcCCC---------H------HHHHHHhCCCCEEE-EEEE----eCCCCEE
Confidence 458999999999999999999 878877543211 0 01111211110000 0000 0012477
Q ss_pred EEEecCCccceeeccCCchHHHHHhhcCceEEEcc
Q psy13906 528 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 562 (914)
Q Consensus 528 ~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~ 562 (914)
.+.||..+.+..|||+|.+++-..+.||.+|.+..
T Consensus 305 ~v~V~~~~~~~AIGk~G~Nvrla~~l~g~~idi~~ 339 (470)
T PRK09202 305 DVVVPDDQLSLAIGKNGQNVRLASKLTGWKIDIMT 339 (470)
T ss_pred EEEECcchHHHhhCCCCeeHHHHHHHHCCeEEEEE
Confidence 89999999999999999999999999999999876
No 97
>PRK00468 hypothetical protein; Provisional
Probab=90.50 E-value=0.27 Score=42.51 Aligned_cols=31 Identities=39% Similarity=0.549 Sum_probs=28.0
Q ss_pred cceEEEEEeeccccceeeccCchhHHHHHhh
Q psy13906 78 QLIQLRLIVPASQCGSIIGKGGSQIKTIRET 108 (914)
Q Consensus 78 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~ 108 (914)
..+.+++.+..+-+|+||||+|.+|+.|+.-
T Consensus 28 ~~~~~~l~v~~~D~GrVIGk~Gr~i~AIRtv 58 (75)
T PRK00468 28 QSVILELKVAPEDMGKVIGKQGRIAKAIRTV 58 (75)
T ss_pred CeEEEEEEEChhhCcceecCCChhHHHHHHH
Confidence 4578899999999999999999999999864
No 98
>PRK02821 hypothetical protein; Provisional
Probab=89.98 E-value=0.24 Score=43.03 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=29.9
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhhhCC
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGA 738 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga 738 (914)
.....++.|..+-+|+||||+|.+|+.||..-.|
T Consensus 29 ~~~~i~l~v~~~D~GrVIGk~Gr~i~AIRtlv~a 62 (77)
T PRK02821 29 RGRTLEVRVHPDDLGKVIGRGGRTATALRTVVAA 62 (77)
T ss_pred CcEEEEEEEChhhCcceeCCCCchHHHHHHHHHH
Confidence 4467899999999999999999999999987654
No 99
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]
Probab=89.02 E-value=0.43 Score=41.22 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=28.8
Q ss_pred CcceEEEEEeeccccceeeccCchhHHHHHhh
Q psy13906 77 SQLIQLRLIVPASQCGSIIGKGGSQIKTIRET 108 (914)
Q Consensus 77 ~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~ 108 (914)
.....+++.+...-.|.||||+|.+|+.|+.-
T Consensus 27 ~~~~~~~l~v~~~D~GkvIGk~GRti~AIRTl 58 (76)
T COG1837 27 EKTVTIELRVAPEDMGKVIGKQGRTIQAIRTL 58 (76)
T ss_pred CCeEEEEEEECcccccceecCCChhHHHHHHH
Confidence 45778999999999999999999999999964
No 100
>KOG3273|consensus
Probab=88.70 E-value=0.58 Score=47.14 Aligned_cols=126 Identities=19% Similarity=0.241 Sum_probs=80.2
Q ss_pred HHHHhCCeEEeeCC--CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccc------c--CCCCCCCcceEEEEEecCC
Q psy13906 465 LREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNK------H--LGGNGESQLIQLRLIVPAS 534 (914)
Q Consensus 465 I~~etga~I~i~~~--~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~------~--~~~~~~~~~~~~~l~VP~~ 534 (914)
|-+..+.+|.+.-. +.+-|.+.-+-++.+++++...|...+-.+.-...- + ..........+++=.=-..
T Consensus 99 ive~lklqiRmNlK~r~VelRt~~~t~D~s~Lqk~adfv~Af~lGF~i~DAiALlrlddlflesFEi~dVKtL~GdHlsR 178 (252)
T KOG3273|consen 99 IVEHLKLQIRMNLKARSVELRTCKDTEDPSALQKGADFVRAFILGFDIDDAIALLRLDDLFLESFEIKDVKTLKGDHLSR 178 (252)
T ss_pred HHHhhhheeEeecccceeEeecCCCCCChHHHHHHHHHHHHHHhCCcchhHHHHHhhhhhhheeeeecccccccchhHHH
Confidence 44556666666422 222233334456777888877777665543211000 0 0000001111222122256
Q ss_pred ccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccCCC
Q psy13906 535 QCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPP 598 (914)
Q Consensus 535 ~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~ 598 (914)
.+|+|+||+|.+--.|+..|.++|.+.. ..|.|-|..+++.-|...||.++..+|+
T Consensus 179 AIGRiaGk~GkTkfaIEn~trtrIVlad--------~kIHiLG~~~niriAR~avcsLIlGspp 234 (252)
T KOG3273|consen 179 AIGRIAGKGGKTKFAIENVTRTRIVLAD--------SKIHILGAFQNIRIARDAVCSLILGSPP 234 (252)
T ss_pred HHHHhhcCCCcceeeeeccceeEEEecC--------ceEEEeecchhhHHHHHhhHhhhccCCc
Confidence 7899999999999999999999999865 4699999999999999999999988753
No 101
>PRK01064 hypothetical protein; Provisional
Probab=88.18 E-value=0.55 Score=40.92 Aligned_cols=32 Identities=41% Similarity=0.547 Sum_probs=28.5
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhc
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETS 554 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~t 554 (914)
..+.+++.+..+..|++|||+|.+|+.|+.-.
T Consensus 28 ~~~~~~l~v~~~D~g~vIGk~G~~i~air~l~ 59 (78)
T PRK01064 28 HTIIYELTVAKPDIGKIIGKEGRTIKAIRTLL 59 (78)
T ss_pred CEEEEEEEECcccceEEECCCCccHHHHHHHH
Confidence 45788999999999999999999999998853
No 102
>PRK01064 hypothetical protein; Provisional
Probab=87.60 E-value=0.45 Score=41.44 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=29.0
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhh
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKIS 736 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~s 736 (914)
...+..++.|...-.|++|||+|.+|+.||...
T Consensus 27 ~~~~~~~l~v~~~D~g~vIGk~G~~i~air~l~ 59 (78)
T PRK01064 27 THTIIYELTVAKPDIGKIIGKEGRTIKAIRTLL 59 (78)
T ss_pred CCEEEEEEEECcccceEEECCCCccHHHHHHHH
Confidence 355778899999999999999999999999864
No 103
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=86.72 E-value=1.8 Score=42.12 Aligned_cols=89 Identities=25% Similarity=0.311 Sum_probs=62.1
Q ss_pred CCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHH---HHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecC
Q psy13906 457 KSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSL---FRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPA 533 (914)
Q Consensus 457 k~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V---~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~ 533 (914)
.++..|++|-++..-+|.|-. ++... +.|...|.+++=+.....+..+ ...+-++.|-.
T Consensus 23 ~~~dli~~lAk~lrKRIvvR~------------dps~l~~~e~A~~~I~~ivP~ea~i~di~F------d~~tGEV~Iea 84 (145)
T cd02410 23 EDGDLVKDLAKDLRKRIVIRP------------DPSVLKPPEEAIKIILEIVPEEAGITDIYF------DDDTGEVIIEA 84 (145)
T ss_pred cccHHHHHHHHHHhceEEEcC------------ChhhcCCHHHHHHHHHHhCCCccCceeeEe------cCCCcEEEEEE
Confidence 567889999999987776642 22222 5677777777632111111111 12355788888
Q ss_pred CccceeeccCCchHHHHHhhcCceEEEccC
Q psy13906 534 SQCGSIIGKGGSQIKTIRETSGASVYVASD 563 (914)
Q Consensus 534 ~~~G~IIGkgG~~IkeI~~~tga~I~v~~~ 563 (914)
..-|.+||++|.++++|..+||-.-.+.+.
T Consensus 85 eKPG~ViGk~g~~~reI~~~tgW~p~vvRt 114 (145)
T cd02410 85 EKPGLVIGKGGSTLREITRETGWAPKVVRT 114 (145)
T ss_pred cCCeEEEecCchhHHHHHHHhCCeeEEEec
Confidence 999999999999999999999998888664
No 104
>KOG3273|consensus
Probab=85.47 E-value=0.49 Score=47.62 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=47.8
Q ss_pred CccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 715 NELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSV 777 (914)
Q Consensus 715 ~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i 777 (914)
+..+|+|+||+|.+--.|.+.|..+|.+.. ..|-|-|+.++++.|+..|..+|
T Consensus 177 sRAIGRiaGk~GkTkfaIEn~trtrIVlad----------~kIHiLG~~~niriAR~avcsLI 229 (252)
T KOG3273|consen 177 SRAIGRIAGKGGKTKFAIENVTRTRIVLAD----------SKIHILGAFQNIRIARDAVCSLI 229 (252)
T ss_pred HHHHHHhhcCCCcceeeeeccceeEEEecC----------ceEEEeecchhhHHHHHhhHhhh
Confidence 357899999999999999999999999983 45999999999999999887776
No 105
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=82.39 E-value=5.6 Score=38.72 Aligned_cols=92 Identities=24% Similarity=0.315 Sum_probs=61.4
Q ss_pred cCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeecccc
Q psy13906 12 KSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQC 91 (914)
Q Consensus 12 k~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~v 91 (914)
.+|+.|++|-++-.-+|.|-.+.. +.- .=++|...|.+++=+...-.+..+ +..+-.+.|-...-
T Consensus 23 ~~~dli~~lAk~lrKRIvvR~dps------~l~---~~e~A~~~I~~ivP~ea~i~di~F------d~~tGEV~IeaeKP 87 (145)
T cd02410 23 EDGDLVKDLAKDLRKRIVIRPDPS------VLK---PPEEAIKIILEIVPEEAGITDIYF------DDDTGEVIIEAEKP 87 (145)
T ss_pred cccHHHHHHHHHHhceEEEcCChh------hcC---CHHHHHHHHHHhCCCccCceeeEe------cCCCcEEEEEEcCC
Confidence 467888999888888888744210 011 124577777777622111111101 12345677788888
Q ss_pred ceeeccCchhHHHHHhhcCcEEEEccC
Q psy13906 92 GSIIGKGGSQIKTIRETSGASVYVASD 118 (914)
Q Consensus 92 g~IIGk~G~~Ik~I~~~sga~I~v~~~ 118 (914)
|.+||++|.++++|..++|-.-.+.+.
T Consensus 88 G~ViGk~g~~~reI~~~tgW~p~vvRt 114 (145)
T cd02410 88 GLVIGKGGSTLREITRETGWAPKVVRT 114 (145)
T ss_pred eEEEecCchhHHHHHHHhCCeeEEEec
Confidence 999999999999999999999988764
No 106
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A.
Probab=81.96 E-value=1.4 Score=37.53 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=27.4
Q ss_pred EEEecCcc-----ccccccCCcchHHHHHhhh-CCEEEEcC
Q psy13906 710 EMTVPNEL-----IGAVIGKGGTKIFEIRKIS-GAMIRISK 744 (914)
Q Consensus 710 ~~~vp~~~-----~g~iIG~~G~~I~~I~~~s-ga~I~i~~ 744 (914)
.+-|-... +|..||++|.+|+.|.++. |-+|+|-.
T Consensus 6 kvaV~~~~~~~d~vG~~iG~~G~rik~i~~~L~gekIdvV~ 46 (69)
T PF13184_consen 6 KVAVKSGDPNIDPVGACIGKKGSRIKAISEELNGEKIDVVE 46 (69)
T ss_dssp EEEEEESSTTS-HHHHHH-CCCCCHHHHHHHTTT-EEEEEE
T ss_pred EEEEEcCCCCcCcceecCccccHHHHHHHHHhCCCeEEEEE
Confidence 44455555 8999999999999999999 99999874
No 107
>COG5166 Uncharacterized conserved protein [Function unknown]
Probab=81.63 E-value=1.1 Score=51.43 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=82.3
Q ss_pred EEEeCCchhHHHHHHHhCCeEEe--eCCCCCeeEE-EEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEE
Q psy13906 453 SIIGKSGETVKKLREESGSKIYI--SDSSTPERIV-TVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRL 529 (914)
Q Consensus 453 ~IIGk~G~~Ik~I~~etga~I~i--~~~~~~ervv-~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l 529 (914)
++-||+.-.+.+|++...|.+.+ ....+. ++. .+.|..-+-.++...+. . +.+.++.+
T Consensus 393 Fl~gkkngK~TrIm~~v~c~~~~~i~~~~gs-~~~~~~~g~~~~F~k~~~~~~---~---------------EFpae~~f 453 (657)
T COG5166 393 FLRGKKNGKATRIMKGVSCSELSSIVSSTGS-IVETNGIGEKMSFSKKLSIPP---T---------------EFPAEIAF 453 (657)
T ss_pred HhccccCcchhhhhhhcccceeeEEEecCCc-EEEEeccCcchhhHHHhcCCc---c---------------cCchheEE
Confidence 66788877799999999998544 333333 433 34565555444332221 1 23567889
Q ss_pred EecCCccceeeccCCchHHHHHhhcCceEEEccCC-CCCCC-cceEEEecCHHH---HHHHHHHHHHHhcc
Q psy13906 530 IVPASQCGSIIGKGGSQIKTIRETSGASVYVASDM-LPNST-EREVNIKGVPDA---VTQAIYQICLIMVD 595 (914)
Q Consensus 530 ~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~-~p~~~-er~V~I~G~~e~---V~~A~~~I~~~l~e 595 (914)
.||...|..|||-||..|++++.+.++.|++.... ++.+. ...|.|.-+-.+ +.-++.-+.+++.+
T Consensus 454 ~i~e~~h~~IIgtgG~~iQ~~m~kh~v~i~f~n~~~~~qs~~~dNV~I~~PrKn~~ni~~~KNd~~~~V~~ 524 (657)
T COG5166 454 IIMESGHEMIIGTGGIEIQENMVKHAVDIAFKNFYKFGQSQWHDNVLIEAPRKNQDNISGKKNDKLDKVKQ 524 (657)
T ss_pred EeecccceeeeccCchhhHHhhhhhhhhhhhhhhhhcchhhhhcceEEECCccCccchhcccccHHHHHhh
Confidence 99999999999999999999999999999987532 33332 234667665433 44455556666653
No 108
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional modifiers of mRNA (e.g. hnRNP K). There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In addition to their KH core domain, KH-II proteins have an N-terminal alpha helical extension while KH-I proteins have a C-terminal alpha helical extension.
Probab=77.12 E-value=3.2 Score=34.29 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=27.6
Q ss_pred eEEEEEecCccccccccCCcchHHHHHhhhCCEE
Q psy13906 707 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMI 740 (914)
Q Consensus 707 ~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I 740 (914)
....+.+.....|.+||++|.+|+.|+..++-.+
T Consensus 25 ~~~~i~~~~~~~g~lIGk~G~~l~~l~~l~~~~~ 58 (68)
T cd02409 25 IEIIIVVARGQPGLVIGKKGQNIRALQKLLQKLL 58 (68)
T ss_pred EEEEEEECCCCCceEECCCCccHHHHHHHHHHHc
Confidence 4555666665689999999999999999998655
No 109
>KOG2874|consensus
Probab=76.28 E-value=4.5 Score=43.06 Aligned_cols=51 Identities=12% Similarity=0.279 Sum_probs=45.9
Q ss_pred ccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHH
Q psy13906 274 GAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVEL 334 (914)
Q Consensus 274 g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~ 334 (914)
-++||.+|.+++.|+--|.|-|-|. ..+|.+.|....++.++..+.+++..
T Consensus 161 qRLiGpng~TLKAlelLT~CYilVq----------G~TVsaiGpfkGlkevr~IV~DcM~N 211 (356)
T KOG2874|consen 161 QRLIGPNGSTLKALELLTNCYILVQ----------GNTVSAIGPFKGLKEVRKIVEDCMKN 211 (356)
T ss_pred HHhcCCCchhHHHHHHHhhcEEEee----------CcEEEeecCcchHHHHHHHHHHHHhc
Confidence 4689999999999999999999996 36999999999999999999888754
No 110
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=75.97 E-value=1.9 Score=49.23 Aligned_cols=39 Identities=38% Similarity=0.548 Sum_probs=35.6
Q ss_pred EEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCC
Q psy13906 708 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSS 746 (914)
Q Consensus 708 ~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~ 746 (914)
...+.||..+++.+|||+|.+|++|.+..|-+|+|....
T Consensus 487 ~avv~vpe~~i~~vigk~g~~i~~ie~klgi~I~v~~~e 525 (604)
T COG1855 487 RAVVKVPEKYIPKVIGKGGKRIKEIEKKLGIKIDVKPLE 525 (604)
T ss_pred eEEEEeCHHHhhHHhhcccchHHHHHHHhCCceEEEEcc
Confidence 457899999999999999999999999999999997553
No 111
>PF13083 KH_4: KH domain; PDB: 3GKU_B.
Probab=75.84 E-value=1.6 Score=37.41 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=28.8
Q ss_pred cceEEEEEeeccccceeeccCchhHHHHHhhcCc
Q psy13906 78 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGA 111 (914)
Q Consensus 78 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga 111 (914)
....+.+.+..+..|.||||+|.+++.|+--...
T Consensus 27 ~~~~i~v~i~~ed~g~lIGk~G~tl~ALq~l~~~ 60 (73)
T PF13083_consen 27 DGDTIVVNIDGEDAGRLIGKHGKTLNALQYLVNA 60 (73)
T ss_dssp TTTEEEEEEESCCCHHHCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCccceEECCCCeeHHHHHHHHHH
Confidence 3567888999999999999999999999865443
No 112
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=75.56 E-value=6.6 Score=45.47 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=65.4
Q ss_pred eeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeec
Q psy13906 9 IIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPA 88 (914)
Q Consensus 9 iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~ 88 (914)
+|=+.|+.|++|.++..-+|.|-.+- .+ ...-++|.+.|.+++=+...-.+..+ +..+-.++|-.
T Consensus 43 ~~~~~~dlik~lAk~lrKRI~iR~dP----sv-----l~~~e~A~~~I~eivP~ea~i~~i~F------d~~tGEViIea 107 (637)
T COG1782 43 LFAKDGDLIKDLAKDLRKRIIIRPDP----SV-----LKPPEEARKIILEIVPEEAGITDIYF------DDDTGEVIIEA 107 (637)
T ss_pred HhccchhHHHHHHHHHhhceEeccCc----hh-----cCCHHHHHHHHHHhCccccCceeEEe------cCCCceEEEEe
Confidence 34567888999999988888885531 00 12345677777777733222111111 13345678888
Q ss_pred cccceeeccCchhHHHHHhhcCcEEEEccC
Q psy13906 89 SQCGSIIGKGGSQIKTIRETSGASVYVASD 118 (914)
Q Consensus 89 ~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~ 118 (914)
+.-|.+|||+|++.++|.+++|-.-.+.+.
T Consensus 108 ~KPGlvigk~g~~~reI~~~tgW~p~ivR~ 137 (637)
T COG1782 108 KKPGLVIGKGGSTLREITAETGWAPKIVRT 137 (637)
T ss_pred cCCceEEecCchHHHHHHHHhCCcceeeec
Confidence 899999999999999999999988877764
No 113
>PF13083 KH_4: KH domain; PDB: 3GKU_B.
Probab=75.07 E-value=1.7 Score=37.24 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=29.7
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhhhCCE
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAM 739 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~ 739 (914)
......+.|..+..|+||||+|.+++.||...++-
T Consensus 27 ~~~~i~v~i~~ed~g~lIGk~G~tl~ALq~l~~~~ 61 (73)
T PF13083_consen 27 DGDTIVVNIDGEDAGRLIGKHGKTLNALQYLVNAA 61 (73)
T ss_dssp TTTEEEEEEESCCCHHHCTTHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCccceEECCCCeeHHHHHHHHHHH
Confidence 45577888999999999999999999999776543
No 114
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=74.41 E-value=6.6 Score=41.43 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=47.1
Q ss_pred EEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHH-HHHHHHHHHH
Q psy13906 264 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDA-IALAQYLINM 330 (914)
Q Consensus 264 ~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~-v~~A~~~I~~ 330 (914)
.-+.|++..+.++||++|+.++-|.+.++|+|-+- .+..|-|.+..+. ...|...|..
T Consensus 148 ~iv~i~p~kVpRvig~~~sm~~~l~~~~~~~I~VG---------~NG~IWV~~~~~~~e~~~~~aI~~ 206 (239)
T COG1097 148 QIVKIPPSKVPRVIGKKGSMLNMLKEKTGCEIIVG---------QNGRIWVDGENESLEELAIEAIRK 206 (239)
T ss_pred EEEEEchhhcceEecCCCcHHHHhhhhcCeEEEEe---------cCCEEEecCCCcchHHHHHHHHHH
Confidence 56789999999999999999999999999999996 3468888887763 5555555543
No 115
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=73.60 E-value=6.3 Score=41.60 Aligned_cols=58 Identities=26% Similarity=0.437 Sum_probs=45.6
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHH-HHHHHHHHHHH
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDA-VTQAIYQICLI 147 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~-V~~A~~~I~~~ 147 (914)
-+.|+...+.++||++|+.++-+.++++|+|.+-. ...|-|.++.+. ...|...|..+
T Consensus 149 iv~i~p~kVpRvig~~~sm~~~l~~~~~~~I~VG~-------NG~IWV~~~~~~~e~~~~~aI~~i 207 (239)
T COG1097 149 IVKIPPSKVPRVIGKKGSMLNMLKEKTGCEIIVGQ-------NGRIWVDGENESLEELAIEAIRKI 207 (239)
T ss_pred EEEEchhhcceEecCCCcHHHHhhhhcCeEEEEec-------CCEEEecCCCcchHHHHHHHHHHH
Confidence 47899999999999999999999999999999965 456777777663 44455555443
No 116
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional modifiers of mRNA (e.g. hnRNP K). There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In addition to their KH core domain, KH-II proteins have an N-terminal alpha helical extension while KH-I proteins have a C-terminal alpha helical extension.
Probab=73.22 E-value=3.2 Score=34.31 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=26.4
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeE
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKI 473 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I 473 (914)
..+.+.+.....|.+||++|++|+.|+..++-.+
T Consensus 25 ~~~~i~~~~~~~g~lIGk~G~~l~~l~~l~~~~~ 58 (68)
T cd02409 25 IEIIIVVARGQPGLVIGKKGQNIRALQKLLQKLL 58 (68)
T ss_pred EEEEEEECCCCCceEECCCCccHHHHHHHHHHHc
Confidence 3444555555689999999999999999998544
No 117
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A.
Probab=73.21 E-value=2.8 Score=35.72 Aligned_cols=37 Identities=35% Similarity=0.563 Sum_probs=29.8
Q ss_pred EEEEEecCCc-----cceeeccCCchHHHHHhhc-CceEEEcc
Q psy13906 526 QLRLIVPASQ-----CGSIIGKGGSQIKTIRETS-GASVYVAS 562 (914)
Q Consensus 526 ~~~l~VP~~~-----~G~IIGkgG~~IkeI~~~t-ga~I~v~~ 562 (914)
..++.|-... +|..||++|.+||.|.++. |-+|.+..
T Consensus 4 r~kvaV~~~~~~~d~vG~~iG~~G~rik~i~~~L~gekIdvV~ 46 (69)
T PF13184_consen 4 RTKVAVKSGDPNIDPVGACIGKKGSRIKAISEELNGEKIDVVE 46 (69)
T ss_dssp EEEEEEEESSTTS-HHHHHH-CCCCCHHHHHHHTTT-EEEEEE
T ss_pred eEEEEEEcCCCCcCcceecCccccHHHHHHHHHhCCCeEEEEE
Confidence 4566777777 8999999999999999999 88998765
No 118
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=72.99 E-value=5.1 Score=46.33 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=66.8
Q ss_pred EEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEec
Q psy13906 453 SIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVP 532 (914)
Q Consensus 453 ~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP 532 (914)
.++=+.|+.||+|.++..-+|.|...-. ....-+.|++.|.+++-+.....+..+ ...+-++.|-
T Consensus 42 ~~~~~~~dlik~lAk~lrKRI~iR~dPs---------vl~~~e~A~~~I~eivP~ea~i~~i~F------d~~tGEViIe 106 (637)
T COG1782 42 ELFAKDGDLIKDLAKDLRKRIIIRPDPS---------VLKPPEEARKIILEIVPEEAGITDIYF------DDDTGEVIIE 106 (637)
T ss_pred HHhccchhHHHHHHHHHhhceEeccCch---------hcCCHHHHHHHHHHhCccccCceeEEe------cCCCceEEEE
Confidence 3455789999999999998888854310 012336677777777733211111111 1235578888
Q ss_pred CCccceeeccCCchHHHHHhhcCceEEEccC
Q psy13906 533 ASQCGSIIGKGGSQIKTIRETSGASVYVASD 563 (914)
Q Consensus 533 ~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~ 563 (914)
...-|.+|||+|++.++|..+||-.-++.+.
T Consensus 107 a~KPGlvigk~g~~~reI~~~tgW~p~ivR~ 137 (637)
T COG1782 107 AKKPGLVIGKGGSTLREITAETGWAPKIVRT 137 (637)
T ss_pred ecCCceEEecCchHHHHHHHHhCCcceeeec
Confidence 9999999999999999999999987777664
No 119
>KOG2874|consensus
Probab=72.67 E-value=6.9 Score=41.70 Aligned_cols=53 Identities=23% Similarity=0.413 Sum_probs=47.4
Q ss_pred eeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhh
Q psy13906 7 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFH 64 (914)
Q Consensus 7 g~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~ 64 (914)
..+||.+|.+++.|+--|+|.|-|+-. .|.+-|.-..+.++.+.+.+.+....
T Consensus 161 qRLiGpng~TLKAlelLT~CYilVqG~-----TVsaiGpfkGlkevr~IV~DcM~NiH 213 (356)
T KOG2874|consen 161 QRLIGPNGSTLKALELLTNCYILVQGN-----TVSAIGPFKGLKEVRKIVEDCMKNIH 213 (356)
T ss_pred HHhcCCCchhHHHHHHHhhcEEEeeCc-----EEEeecCcchHHHHHHHHHHHHhccc
Confidence 468999999999999999999999765 89999999999999999999886643
No 120
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=72.32 E-value=3 Score=47.75 Aligned_cols=39 Identities=38% Similarity=0.548 Sum_probs=35.8
Q ss_pred EEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCC
Q psy13906 263 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSS 301 (914)
Q Consensus 263 ~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~ 301 (914)
...+.||.++++.+|||+|.+|++|++..|.+|.|.+.+
T Consensus 487 ~avv~vpe~~i~~vigk~g~~i~~ie~klgi~I~v~~~e 525 (604)
T COG1855 487 RAVVKVPEKYIPKVIGKGGKRIKEIEKKLGIKIDVKPLE 525 (604)
T ss_pred eEEEEeCHHHhhHHhhcccchHHHHHHHhCCceEEEEcc
Confidence 467889999999999999999999999999999998754
No 121
>PRK13764 ATPase; Provisional
Probab=68.73 E-value=3.7 Score=49.66 Aligned_cols=42 Identities=36% Similarity=0.445 Sum_probs=37.1
Q ss_pred ceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCC
Q psy13906 706 QITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSE 747 (914)
Q Consensus 706 ~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~ 747 (914)
.....+.||.+.++.+|||+|.+|++|.+..|.+|+|-...+
T Consensus 480 ~~~~~v~~~~~~~~~~~~k~~~~~~~~~~~~~~~i~v~~~~~ 521 (602)
T PRK13764 480 DNKAVVYVPEKDIPKVIGKGGKRIKKIEKKLGIDIDVRPLDE 521 (602)
T ss_pred CCeEEEEEChhhhhHHhccCcchHHHHHHHhCCceEEEEccc
Confidence 335689999999999999999999999999999999975543
No 122
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=67.55 E-value=9.8 Score=46.65 Aligned_cols=94 Identities=23% Similarity=0.297 Sum_probs=64.1
Q ss_pred EeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCC
Q psy13906 455 IGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPAS 534 (914)
Q Consensus 455 IGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~ 534 (914)
+=.+++.||+|-++..-+|.|..... + ...-+.|.+.|.+++-+.....+-.+ ...+-++.|-..
T Consensus 38 ~~~~~~~~~~~~~~~~~r~~~~~~~~------~---~~~~~~~~~~i~~~~~~~~~~~~~~f------~~~~~~v~i~~~ 102 (630)
T TIGR03675 38 FAKDDDLVKELAKKLRKRIVIRPDPS------V---LLPPEEAIEKIKEIVPEEAGITDIYF------DDVTGEVIIEAE 102 (630)
T ss_pred hccchHHHHHHHHHhhceEEEecChh------h---cCCHHHHHHHHHHhCCCcCCceeEEe------cCCCceEEEEEc
Confidence 44678999999999988877743210 0 11125577777776632111111111 134567888899
Q ss_pred ccceeeccCCchHHHHHhhcCceEEEccC
Q psy13906 535 QCGSIIGKGGSQIKTIRETSGASVYVASD 563 (914)
Q Consensus 535 ~~G~IIGkgG~~IkeI~~~tga~I~v~~~ 563 (914)
.-|.+|||+|.++++|.++||-+.++.+.
T Consensus 103 ~p~~~~~~~~~~~~~i~~~~~w~~~~~~~ 131 (630)
T TIGR03675 103 KPGLVIGKGGSTLREITAETGWTPKVVRT 131 (630)
T ss_pred CCeEEEecCcchHHHHHHHhCCeeeEEec
Confidence 99999999999999999999998888764
No 123
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=66.70 E-value=6 Score=34.35 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=26.8
Q ss_pred EEEEEecCCccceeeccCCchHHHHHhhcCceE
Q psy13906 526 QLRLIVPASQCGSIIGKGGSQIKTIRETSGASV 558 (914)
Q Consensus 526 ~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I 558 (914)
.+.+.|.....|.+|||+|++++.|+--...-+
T Consensus 25 ~i~i~i~~~~~g~LIGk~G~tL~AlQ~L~~~~~ 57 (77)
T cd02414 25 TVEVNISGDDIGLLIGKRGKTLDALQYLANLVL 57 (77)
T ss_pred EEEEEEecCCCCeEECCCCccHHHHHHHHHHHH
Confidence 456777888899999999999999887655433
No 124
>PF07650 KH_2: KH domain syndrome, contains KH motifs.; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....
Probab=63.91 E-value=4.2 Score=35.26 Aligned_cols=34 Identities=44% Similarity=0.589 Sum_probs=29.0
Q ss_pred eEEEEEeeccccceeeccCchhHHHHHhhcCcEE
Q psy13906 80 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASV 113 (914)
Q Consensus 80 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I 113 (914)
....+.+...+-+.|||++|++|++|.+...-.+
T Consensus 25 ~~~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l 58 (78)
T PF07650_consen 25 DQIIIVIKASQPGIVIGKKGSNIKKIREELRKEL 58 (78)
T ss_dssp SEEEEEEEESSHHHHHTGGGHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCccHhHHhhhHHHHHHHHHHHHHH
Confidence 4567889999999999999999999988766555
No 125
>PF07650 KH_2: KH domain syndrome, contains KH motifs.; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....
Probab=63.48 E-value=4.7 Score=34.94 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=29.1
Q ss_pred eEEEEEecCccccccccCCcchHHHHHhhhCCEEE
Q psy13906 707 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIR 741 (914)
Q Consensus 707 ~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~ 741 (914)
....+.+-...-|.|||++|++|++|++..+-.+.
T Consensus 25 ~~~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l~ 59 (78)
T PF07650_consen 25 DQIIIVIKASQPGIVIGKKGSNIKKIREELRKELE 59 (78)
T ss_dssp SEEEEEEEESSHHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCccHhHHhhhHHHHHHHHHHHHHHh
Confidence 45678888899999999999999999887755553
No 126
>PRK13764 ATPase; Provisional
Probab=62.14 E-value=6.9 Score=47.38 Aligned_cols=42 Identities=36% Similarity=0.445 Sum_probs=37.4
Q ss_pred ceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCC
Q psy13906 261 QITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSE 302 (914)
Q Consensus 261 ~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~ 302 (914)
.-...+.||.++++.+|||+|.+|++|+++.|.+|.|.+..+
T Consensus 480 ~~~~~v~~~~~~~~~~~~k~~~~~~~~~~~~~~~i~v~~~~~ 521 (602)
T PRK13764 480 DNKAVVYVPEKDIPKVIGKGGKRIKKIEKKLGIDIDVRPLDE 521 (602)
T ss_pred CCeEEEEEChhhhhHHhccCcchHHHHHHHhCCceEEEEccc
Confidence 335678999999999999999999999999999999987543
No 127
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=61.76 E-value=8.2 Score=33.49 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=26.4
Q ss_pred EEEEEeeccccceeeccCchhHHHHHhhcCcEE
Q psy13906 81 QLRLIVPASQCGSIIGKGGSQIKTIRETSGASV 113 (914)
Q Consensus 81 ~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I 113 (914)
.+.+.|..+..|.+|||+|.++..|+--....+
T Consensus 25 ~i~i~i~~~~~g~LIGk~G~tL~AlQ~L~~~~~ 57 (77)
T cd02414 25 TVEVNISGDDIGLLIGKRGKTLDALQYLANLVL 57 (77)
T ss_pred EEEEEEecCCCCeEECCCCccHHHHHHHHHHHH
Confidence 456777788999999999999999886554433
No 128
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=58.07 E-value=25 Score=43.21 Aligned_cols=93 Identities=24% Similarity=0.289 Sum_probs=60.8
Q ss_pred ccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccc
Q psy13906 11 GKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQ 90 (914)
Q Consensus 11 Gk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~ 90 (914)
=.+++.|++|-++-.-+|.|-.+. . +.- .=++|...|.+++=+...-.+..+ +..+-.+.|-...
T Consensus 39 ~~~~~~~~~~~~~~~~r~~~~~~~---~---~~~---~~~~~~~~i~~~~~~~~~~~~~~f------~~~~~~v~i~~~~ 103 (630)
T TIGR03675 39 AKDDDLVKELAKKLRKRIVIRPDP---S---VLL---PPEEAIEKIKEIVPEEAGITDIYF------DDVTGEVIIEAEK 103 (630)
T ss_pred ccchHHHHHHHHHhhceEEEecCh---h---hcC---CHHHHHHHHHHhCCCcCCceeEEe------cCCCceEEEEEcC
Confidence 356778888888887777775421 0 011 124566777776632211111000 1234567788888
Q ss_pred cceeeccCchhHHHHHhhcCcEEEEccC
Q psy13906 91 CGSIIGKGGSQIKTIRETSGASVYVASD 118 (914)
Q Consensus 91 vg~IIGk~G~~Ik~I~~~sga~I~v~~~ 118 (914)
-|.+|||+|.++++|.+++|-...+.+.
T Consensus 104 p~~~~~~~~~~~~~i~~~~~w~~~~~~~ 131 (630)
T TIGR03675 104 PGLVIGKGGSTLREITAETGWTPKVVRT 131 (630)
T ss_pred CeEEEecCcchHHHHHHHhCCeeeEEec
Confidence 8999999999999999999999988764
No 129
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=54.40 E-value=4.5 Score=35.59 Aligned_cols=32 Identities=9% Similarity=0.399 Sum_probs=26.0
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecC
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISD 32 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~ 32 (914)
|+..+-|.|||++|+.|++|+++-.-...+.+
T Consensus 36 I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~ 67 (81)
T cd02413 36 IRATRTQNVLGEKGRRIRELTSLVQKRFNFPE 67 (81)
T ss_pred EEeCCCceEECCCchhHHHHHHHHHHHhCCCC
Confidence 35677899999999999999999776666644
No 130
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=53.16 E-value=15 Score=32.34 Aligned_cols=36 Identities=14% Similarity=0.359 Sum_probs=29.2
Q ss_pred eEEEEEeeccccceeeccCchhHHHHHhhcCcEEEE
Q psy13906 80 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYV 115 (914)
Q Consensus 80 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v 115 (914)
..+++.|....-|.|||++|+.|++|++.-.-...+
T Consensus 30 ~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~ 65 (81)
T cd02413 30 TRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNF 65 (81)
T ss_pred CeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCC
Confidence 357888999999999999999999998865544433
No 131
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=49.77 E-value=18 Score=36.28 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=32.1
Q ss_pred eEEEEEecCCccceeeccCCchHHHHHhhcCceEEEcc
Q psy13906 525 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 562 (914)
Q Consensus 525 ~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~ 562 (914)
-.+-++|.... |..|||+|.+|+.+++..|-+|.+.-
T Consensus 61 drvIfvV~~gd-g~aIGk~G~~ik~l~~~lgk~VevVE 97 (166)
T PRK06418 61 DLVILLVTSGP-RIPIGKGGKIAKALSRKLGKKVRVVE 97 (166)
T ss_pred CEEEEEEeCCC-cccccccchHHHHHHHHhCCcEEEEE
Confidence 35667787777 99999999999999999999998764
No 132
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=47.75 E-value=23 Score=35.65 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=32.0
Q ss_pred eEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 80 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 80 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
..+-++|-... |.-|||+|.+|+.+++.-|-+|.+.-
T Consensus 61 drvIfvV~~gd-g~aIGk~G~~ik~l~~~lgk~VevVE 97 (166)
T PRK06418 61 DLVILLVTSGP-RIPIGKGGKIAKALSRKLGKKVRVVE 97 (166)
T ss_pred CEEEEEEeCCC-cccccccchHHHHHHHHhCCcEEEEE
Confidence 35667787777 99999999999999999999998853
No 133
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=46.80 E-value=1.1e+02 Score=37.19 Aligned_cols=116 Identities=21% Similarity=0.282 Sum_probs=69.9
Q ss_pred chhHHHHHHHhCCeEEec-----------CCC---CCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcc
Q psy13906 14 GETVKKLREESGSKIYIS-----------DSS---TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQL 79 (914)
Q Consensus 14 G~~Ik~I~~etga~I~v~-----------~~~---~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~ 79 (914)
|+++.++.......+.|. .++ ...+++.+.|+.+++++....+-..+.+.. . .+ .+.
T Consensus 232 GkTl~el~~~~~~~v~I~~I~R~g~~~~p~~dtvL~~GD~L~V~G~~e~L~~l~~~~G~~~~~~~---~----~~--~~~ 302 (562)
T TIGR03802 232 GKTVGDLENLFAGRVTIERIRRDGKLLTVSPDLVLNAGDVVLVVGRRDAVVQFGAEIGEEVQEVE---G----LD--VPM 302 (562)
T ss_pred CCcHHHHHhhhCCCeEEEEEEECCEEEcCCCCCeeCCCCEEEEEECHHHHHHHHHhcCCccCCcc---c----cC--Cce
Confidence 788999988775544442 111 346889999999999888665433221110 0 00 112
Q ss_pred eEEEEEeeccccceeeccCchhHHHHH------hhcCcEEEEccC---CCCC------CCCceEEEecCHHHHHHHHHHH
Q psy13906 80 IQLRLIVPASQCGSIIGKGGSQIKTIR------ETSGASVYVASD---MLPN------STEREVNIKGVPDAVTQAIYQI 144 (914)
Q Consensus 80 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~------~~sga~I~v~~~---~~~~------~~dr~V~I~G~~~~V~~A~~~I 144 (914)
...++.+|+ ..++|| +|+++. +++|+.|.-... ..+. ..-+.+.+.|++++++++.+.+
T Consensus 303 ~~e~VV~~~---S~liGk---TL~eL~~r~~~~~~~Gv~Vl~I~R~g~~i~~~~d~~L~~GD~LlV~G~~~~l~~~~~~l 376 (562)
T TIGR03802 303 ETKDVVLTN---KEYNGK---TVAEILKNAQQFMRHGVYVEKIKRDDQPLPILPETVLQRGDVVTLVGTPQDVDRAAKQL 376 (562)
T ss_pred EEEEEEECC---cccCCc---cHHHHhccccccccCCeEEEEEeeCCccccCCCCCEecCCCEEEEEeCHHHHHHHHHHc
Confidence 245566665 455554 788886 267876655431 1111 2235888999999999976653
No 134
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=44.35 E-value=1.1e+02 Score=33.01 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCcccccccc
Q psy13906 886 SGGFGGVPQGPNYANIQTTGVQR 908 (914)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~ 908 (914)
.+.+|+.+..+...+..+|+++.
T Consensus 178 ~~~~g~~~~~~~~~~~~~~~~nn 200 (247)
T PF09849_consen 178 GGPWGGAGDGSGGAPAEDTGINN 200 (247)
T ss_pred ccccCCCCccccccccccccccC
Confidence 34556666666667777777764
No 135
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=43.40 E-value=2.4e+02 Score=28.69 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=66.6
Q ss_pred EEEEEc--ChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 484 IVTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 484 vv~I~G--~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
.++|+| +.+++..|...+.+++++...... .....+++-.|-...+++= -.++.|....+-.+...
T Consensus 57 KivitGaks~~~~~~a~~~~~~~L~~~g~~~~-------~~~~~~v~NIvas~~l~~~-----i~L~~la~~~~~~~~Ye 124 (174)
T cd00652 57 KMVITGAKSEEDAKLAARKYARILQKLGFPVE-------KFPEFKVQNIVASCDLGFP-----IRLEELALKHPENASYE 124 (174)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHcCCCcc-------ccCceEEEEEEEEEECCCc-----ccHHHHHhhhhcccEEC
Confidence 488888 689999999999999987542210 1123444444444334332 34788887777667777
Q ss_pred cCCCCCC--------------CcceEEEec--CHHHHHHHHHHHHHHhcc
Q psy13906 562 SDMLPNS--------------TEREVNIKG--VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 562 ~~~~p~~--------------~er~V~I~G--~~e~V~~A~~~I~~~l~e 595 (914)
++.+|.- ..-.|+|+| +.+.+.+|...|..+|.+
T Consensus 125 Pe~fpgli~r~~~pk~t~lIF~sGkvvitGaks~~~~~~a~~~i~~~L~~ 174 (174)
T cd00652 125 PELFPGLIYRMDEPKVVLLIFVSGKIVITGAKSREDIYEAVEKIYPILKE 174 (174)
T ss_pred CccCceEEEEecCCcEEEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence 7766641 245678888 458899999999988753
No 136
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=42.10 E-value=22 Score=33.06 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=25.6
Q ss_pred EEEEEeeccccceeeccCchhHHHHHhhcC
Q psy13906 81 QLRLIVPASQCGSIIGKGGSQIKTIRETSG 110 (914)
Q Consensus 81 ~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sg 110 (914)
.+++.|-...-|.|||++|++|++|++.-.
T Consensus 62 ~i~I~I~t~rPg~vIG~~G~~i~~L~~~l~ 91 (109)
T cd02412 62 RVEVTIHTARPGIIIGKKGAGIEKLRKELQ 91 (109)
T ss_pred CEEEEEEeCCCCcccCCchHHHHHHHHHHH
Confidence 477888888899999999999999887543
No 137
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=40.62 E-value=13 Score=34.58 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=22.4
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCe
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSK 27 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~ 27 (914)
|+..+-|.|||++|+.|++|++.....
T Consensus 67 I~t~rPg~vIG~~G~~i~~L~~~l~~~ 93 (109)
T cd02412 67 IHTARPGIIIGKKGAGIEKLRKELQKL 93 (109)
T ss_pred EEeCCCCcccCCchHHHHHHHHHHHHH
Confidence 456778999999999999999886544
No 138
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.12 E-value=59 Score=32.43 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=36.2
Q ss_pred hhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHH
Q psy13906 15 ETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIE 61 (914)
Q Consensus 15 ~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~ 61 (914)
+.+..|.+-+|+-|.+ + ++.+|.|.|+.+.|.+|++.+..++.
T Consensus 126 erl~ei~E~~gvI~Ef-e---e~~~V~I~Gdke~Ik~aLKe~s~~wk 168 (169)
T PF09869_consen 126 ERLQEISEWHGVIFEF-E---EDDKVVIEGDKERIKKALKEFSSFWK 168 (169)
T ss_pred HHHHHHHHHhceeEEe-c---CCcEEEEeccHHHHHHHHHHHHHHhc
Confidence 4678888889999999 2 45679999999999999999877654
No 139
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=37.56 E-value=18 Score=32.03 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.7
Q ss_pred CCcceeeeeccCchhHHHHHHHh
Q psy13906 2 QGKEVGSIIGKSGETVKKLREES 24 (914)
Q Consensus 2 ~s~~vg~iIGk~G~~Ik~I~~et 24 (914)
+...-|.+||++|++|++|++.-
T Consensus 45 ~t~~pg~iIGk~G~~I~~l~~~l 67 (85)
T cd02411 45 YAERPGMVIGRGGKNIRELTEIL 67 (85)
T ss_pred EECCCCceECCCchhHHHHHHHH
Confidence 45677999999999999998874
No 140
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=36.99 E-value=35 Score=30.17 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=23.7
Q ss_pred EEEEeeccccceeeccCchhHHHHHhhc
Q psy13906 82 LRLIVPASQCGSIIGKGGSQIKTIRETS 109 (914)
Q Consensus 82 ~~l~Vp~~~vg~IIGk~G~~Ik~I~~~s 109 (914)
+++.|....-|.+||++|.+|+++++.-
T Consensus 40 i~V~I~t~~pg~iIGk~G~~I~~l~~~l 67 (85)
T cd02411 40 TQITIYAERPGMVIGRGGKNIRELTEIL 67 (85)
T ss_pred EEEEEEECCCCceECCCchhHHHHHHHH
Confidence 6677777888999999999999988653
No 141
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=36.89 E-value=24 Score=37.16 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=21.2
Q ss_pred CCCcceeeeeccCchhHHHHHHHhC
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESG 25 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etg 25 (914)
|+..+-|.|||++|++|++|+++..
T Consensus 57 I~aarPg~VIGk~G~~I~~L~~~l~ 81 (233)
T COG0092 57 IHAARPGLVIGKKGSNIEKLRKELE 81 (233)
T ss_pred EEeCCCcceEcCCCccHHHHHHHHH
Confidence 4567789999999999999988744
No 142
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=36.40 E-value=95 Score=34.87 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=48.1
Q ss_pred ecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHH--HHHHH
Q psy13906 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLIN--MSVEL 334 (914)
Q Consensus 268 Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~--~~ve~ 334 (914)
-+++..-.+.|..+.+++.|++.+|+.|... .+.++|.|+.+.|+.|...+. +++..
T Consensus 21 ~~~~~~~~l~G~~~~~l~l~e~~~gv~i~~r----------G~~~~i~g~~~~v~~A~~~l~~l~~~~~ 79 (348)
T COG1702 21 SDDNELVALFGPTDTNLSLLEIALGVSIVAR----------GEAVRIIGARPLVDVATRVLLTLELLAE 79 (348)
T ss_pred CCchhhhhhcCCCCccHHHHHHHhCcEEEeC----------CceEEEEechHHHHHHHHHHhHHHHHHH
Confidence 3466778899999999999999999998775 368999999889999999888 55544
No 143
>PRK03818 putative transporter; Validated
Probab=36.09 E-value=1.9e+02 Score=35.12 Aligned_cols=116 Identities=17% Similarity=0.340 Sum_probs=70.7
Q ss_pred chhHHHHHHHhCCeEEecC-----------CC---CCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcc
Q psy13906 14 GETVKKLREESGSKIYISD-----------SS---TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQL 79 (914)
Q Consensus 14 G~~Ik~I~~etga~I~v~~-----------~~---~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~ 79 (914)
|++++++.......+.|.. ++ ...+++.|.|+.+++.++...+-..... .. . ......
T Consensus 218 GkTv~el~~~~~~~v~V~~I~R~g~~~~p~~~~~L~~GDiLlV~G~~e~l~~l~~~~Gl~~~~---~~----~-~~~~~~ 289 (552)
T PRK03818 218 GKAIKDVPILNGDKFVCSRLKRGDTLMVPSPDTIIQLGDLLHLVGQPEDLHKAQLVIGEEVDT---SL----S-TRGTDL 289 (552)
T ss_pred CCcHHHHHhhhCCCEEEEEEEECCEEECCCCCCccCCCCEEEEEECHHHHHHHHHhcCCccCc---cc----c-ccCcce
Confidence 7899999998776665521 11 3568899999999988876554432110 00 0 001223
Q ss_pred eEEEEEeeccccceeeccCchhHHHH--HhhcCcEEEEccC---CC-CC-----CCCceEEEecCHHHHHHHHHH
Q psy13906 80 IQLRLIVPASQCGSIIGKGGSQIKTI--RETSGASVYVASD---ML-PN-----STEREVNIKGVPDAVTQAIYQ 143 (914)
Q Consensus 80 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I--~~~sga~I~v~~~---~~-~~-----~~dr~V~I~G~~~~V~~A~~~ 143 (914)
...++++|+ ..++|| +|+++ ++++|+.|.-... .. +. ..-+++.+.|+++++++..+.
T Consensus 290 ~~E~Vvv~~---S~liGk---TL~eL~~r~~~Gv~VlaI~R~g~~l~~~~d~~Lq~GD~LlVvG~~~~i~~l~~~ 358 (552)
T PRK03818 290 RSERVVVTN---EKVLGK---KLRDLHLKNKYGVVISRLNRAGVELVASPDLSLQFGDILNLVGRPEAIDAVANV 358 (552)
T ss_pred EEEEEEEcC---hhccCC---cHHHhcccccCCeEEEEEeECCeecCCCCCCEEecCCEEEEEECHHHHHHHHHH
Confidence 455566665 456665 77776 5667776554321 11 11 123578899999999997664
No 144
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=35.72 E-value=2.1e+02 Score=34.85 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=67.6
Q ss_pred chhHHHHHHHhCCeEEee---CC--------C---CCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcc
Q psy13906 459 GETVKKLREESGSKIYIS---DS--------S---TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQL 524 (914)
Q Consensus 459 G~~Ik~I~~etga~I~i~---~~--------~---~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~ 524 (914)
|.+|+++...+...+.|. +. + ...+++.+.|+.+++.+....+-..+.+... . . . ..
T Consensus 232 GkTl~el~~~~~~~v~I~~I~R~g~~~~p~~dtvL~~GD~L~V~G~~e~L~~l~~~~G~~~~~~~~---~----~-~-~~ 302 (562)
T TIGR03802 232 GKTVGDLENLFAGRVTIERIRRDGKLLTVSPDLVLNAGDVVLVVGRRDAVVQFGAEIGEEVQEVEG---L----D-V-PM 302 (562)
T ss_pred CCcHHHHHhhhCCCeEEEEEEECCEEEcCCCCCeeCCCCEEEEEECHHHHHHHHHhcCCccCCccc---c----C-C-ce
Confidence 566888877665444432 11 1 2346799999999998877654433211100 0 0 1 12
Q ss_pred eEEEEEecCCccceeeccCCchHHHHH------hhcCceEEE-ccC--CCCC------CCcceEEEecCHHHHHHHHHHH
Q psy13906 525 IQLRLIVPASQCGSIIGKGGSQIKTIR------ETSGASVYV-ASD--MLPN------STEREVNIKGVPDAVTQAIYQI 589 (914)
Q Consensus 525 ~~~~l~VP~~~~G~IIGkgG~~IkeI~------~~tga~I~v-~~~--~~p~------~~er~V~I~G~~e~V~~A~~~I 589 (914)
...++.+|++ .++ |.+|+++. +.+|+.|.- .+. ..+. ..-+.+.+.|+.++++++.+.+
T Consensus 303 ~~e~VV~~~S---~li---GkTL~eL~~r~~~~~~~Gv~Vl~I~R~g~~i~~~~d~~L~~GD~LlV~G~~~~l~~~~~~l 376 (562)
T TIGR03802 303 ETKDVVLTNK---EYN---GKTVAEILKNAQQFMRHGVYVEKIKRDDQPLPILPETVLQRGDVVTLVGTPQDVDRAAKQL 376 (562)
T ss_pred EEEEEEECCc---ccC---CccHHHHhccccccccCCeEEEEEeeCCccccCCCCCEecCCCEEEEEeCHHHHHHHHHHc
Confidence 2444555543 344 45888887 267886643 331 1221 1236899999999999877764
Q ss_pred H
Q psy13906 590 C 590 (914)
Q Consensus 590 ~ 590 (914)
-
T Consensus 377 G 377 (562)
T TIGR03802 377 G 377 (562)
T ss_pred C
Confidence 3
No 145
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=35.14 E-value=4e+02 Score=27.01 Aligned_cols=100 Identities=12% Similarity=0.174 Sum_probs=63.1
Q ss_pred eEEEEEc--ChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEE
Q psy13906 38 RIVTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYV 115 (914)
Q Consensus 38 rvV~I~G--~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v 115 (914)
-.|.|+| +.+.+..|...+.+++++..-... .....+++-.+-....+. .-.++.|....+-.+..
T Consensus 56 GKivitGaks~~~~~~a~~~~~~~L~~~g~~~~-------~~~~~~v~NIvas~~l~~-----~i~L~~la~~~~~~~~Y 123 (174)
T cd00652 56 GKMVITGAKSEEDAKLAARKYARILQKLGFPVE-------KFPEFKVQNIVASCDLGF-----PIRLEELALKHPENASY 123 (174)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHHHcCCCcc-------ccCceEEEEEEEEEECCC-----cccHHHHHhhhhcccEE
Confidence 3577777 478899999999998877543210 112344444444333332 23477777776656666
Q ss_pred ccCCCCC--------------CCCceEEEecC--HHHHHHHHHHHHHHhc
Q psy13906 116 ASDMLPN--------------STEREVNIKGV--PDAVTQAIYQICLIMV 149 (914)
Q Consensus 116 ~~~~~~~--------------~~dr~V~I~G~--~~~V~~A~~~I~~~l~ 149 (914)
.++..|. -....|.|+|. .+.+++|.+.|..+|.
T Consensus 124 ePe~fpgli~r~~~pk~t~lIF~sGkvvitGaks~~~~~~a~~~i~~~L~ 173 (174)
T cd00652 124 EPELFPGLIYRMDEPKVVLLIFVSGKIVITGAKSREDIYEAVEKIYPILK 173 (174)
T ss_pred CCccCceEEEEecCCcEEEEEEcCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 5554343 23567888887 4789999999988875
No 146
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=35.02 E-value=32 Score=36.28 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=25.7
Q ss_pred ceEEEEEeeccccceeeccCchhHHHHHhh
Q psy13906 79 LIQLRLIVPASQCGSIIGKGGSQIKTIRET 108 (914)
Q Consensus 79 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~ 108 (914)
...+++.|....=|.|||++|++|++|++.
T Consensus 50 ~~~~~V~I~aarPg~VIGk~G~~I~~L~~~ 79 (233)
T COG0092 50 PKGTRVTIHAARPGLVIGKKGSNIEKLRKE 79 (233)
T ss_pred CCceEEEEEeCCCcceEcCCCccHHHHHHH
Confidence 346788899999999999999999997753
No 147
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=32.60 E-value=46 Score=34.52 Aligned_cols=107 Identities=10% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCceEEEEEcChhH-H-----HHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhh
Q psy13906 35 TPERIVTVIGSMDS-L-----FRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRET 108 (914)
Q Consensus 35 ~~ervV~I~G~~e~-V-----~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~ 108 (914)
...-.|.+....+. + +++...+.++++...-... ......-..+.+.|..+..+.|||++|.++..|+--
T Consensus 44 ~k~a~v~v~~~~~~~~~~~~~~~~~~~L~ell~~m~~~~~----i~v~~~~~~v~~~i~~~~~~~LIG~~Gk~LdALQ~L 119 (208)
T COG1847 44 KKPAVVKVEPKADETVIEKIAQEAKDYLEELLELMDFEVT----ITVSEEGRRVVVSIEGEDAGRLIGKHGKTLDALQYL 119 (208)
T ss_pred CccccceeeeccccchhhHHHHHHHHHHHHHHHHhCCceE----EEEeecCcEEEEEecCCchhhhhccCCcchHHHHHH
Confidence 34445566655555 3 6666666666655432111 011112345666777777999999999999999977
Q ss_pred cCcEEEEccCCCCCCCCceEE--EecCHHHHHHHHHHHHHHhcc
Q psy13906 109 SGASVYVASDMLPNSTEREVN--IKGVPDAVTQAIYQICLIMVD 150 (914)
Q Consensus 109 sga~I~v~~~~~~~~~dr~V~--I~G~~~~V~~A~~~I~~~l~~ 150 (914)
+.+.++-. ......|+ +-+-.+.-+.-+..+.+.+.+
T Consensus 120 ~n~~l~~~-----~g~~~~v~ldv~~yRerR~e~L~~LA~~~A~ 158 (208)
T COG1847 120 ANLYLNKI-----GGKFKRVTLDVGDYRERRKETLIKLAERAAE 158 (208)
T ss_pred HHHHhhhh-----cCcceEEEEEhhhHHHHHHHHHHHHHHHHHH
Confidence 66655331 12222333 334444444455555555544
No 148
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=31.91 E-value=1.1e+02 Score=34.50 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=48.7
Q ss_pred cCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHH--HHHHHHHh
Q psy13906 714 PNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLIN--MSVELLRA 782 (914)
Q Consensus 714 p~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~--~~i~~~~~ 782 (914)
+.+..-.+.|..+.+++.|.+..|+.|.... +.++|+|+.+.++.|...++ +.+.+.++
T Consensus 22 ~~~~~~~l~G~~~~~l~l~e~~~gv~i~~rG----------~~~~i~g~~~~v~~A~~~l~~l~~~~~~~~ 82 (348)
T COG1702 22 DDNELVALFGPTDTNLSLLEIALGVSIVARG----------EAVRIIGARPLVDVATRVLLTLELLAEVRR 82 (348)
T ss_pred CchhhhhhcCCCCccHHHHHHHhCcEEEeCC----------ceEEEEechHHHHHHHHHHhHHHHHHHHhc
Confidence 3567788999999999999999999988762 45899999889999999888 66655444
No 149
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=31.91 E-value=4.8e+02 Score=26.49 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=64.5
Q ss_pred EEEEEcC--hhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 484 IVTVIGS--MDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 484 vv~I~G~--~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
.+.|+|. .++...|...+.+++++...... .....+++-.|-...++.=| .+.+|...+.-.+...
T Consensus 57 KiviTGaks~~~~~~a~~~~~~~l~~~g~~~~-------~~~~f~v~nIvat~~~~~~i-----~L~~la~~~~~~~~Ye 124 (174)
T cd04517 57 KITITGATSEEEAKQAARRAARLLQKLGFKVV-------RFSNFRVVNVLATCSMPFPI-----RLDELAAKNRSSASYE 124 (174)
T ss_pred eEEEEccCCHHHHHHHHHHHHHHHHHcCCCcc-------cCCceEEEEEEEEEeCCCcc-----cHHHHHHhchhhcEeC
Confidence 3788885 88899999999999887532110 11234444444444343322 3777777665567777
Q ss_pred cCCCCCC--------------CcceEEEec--CHHHHHHHHHHHHHHhcc
Q psy13906 562 SDMLPNS--------------TEREVNIKG--VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 562 ~~~~p~~--------------~er~V~I~G--~~e~V~~A~~~I~~~l~e 595 (914)
++.+|.- ..-.|+|+| +.+.+.+|.+.|..++.+
T Consensus 125 PE~fPgliyr~~~p~~t~lIF~sGkivitGaks~~~~~~a~~~i~pil~~ 174 (174)
T cd04517 125 PELHPGVVYRITGPRATLSIFSTGSVTVTGARSMEDVREAVEKIYPIVFE 174 (174)
T ss_pred CccCCEEEEEECCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence 7666641 245678888 568999999999888753
No 150
>PRK03818 putative transporter; Validated
Probab=31.41 E-value=2.5e+02 Score=34.04 Aligned_cols=116 Identities=17% Similarity=0.330 Sum_probs=69.2
Q ss_pred chhHHHHHHHhCCeEEeeC---C--------C---CCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcc
Q psy13906 459 GETVKKLREESGSKIYISD---S--------S---TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQL 524 (914)
Q Consensus 459 G~~Ik~I~~etga~I~i~~---~--------~---~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~ 524 (914)
|+++++++......+.|.. . + ...+++.+.|+.+++.++...+-..+.. +. . ...+..
T Consensus 218 GkTv~el~~~~~~~v~V~~I~R~g~~~~p~~~~~L~~GDiLlV~G~~e~l~~l~~~~Gl~~~~--~~-~-----~~~~~~ 289 (552)
T PRK03818 218 GKAIKDVPILNGDKFVCSRLKRGDTLMVPSPDTIIQLGDLLHLVGQPEDLHKAQLVIGEEVDT--SL-S-----TRGTDL 289 (552)
T ss_pred CCcHHHHHhhhCCCEEEEEEEECCEEECCCCCCccCCCCEEEEEECHHHHHHHHHhcCCccCc--cc-c-----ccCcce
Confidence 6789999988876665531 1 1 2346799999999988877655433211 00 0 001123
Q ss_pred eEEEEEecCCccceeeccCCchHHHH--HhhcCceEEE-cc--CCC-CC-----CCcceEEEecCHHHHHHHHHH
Q psy13906 525 IQLRLIVPASQCGSIIGKGGSQIKTI--RETSGASVYV-AS--DML-PN-----STEREVNIKGVPDAVTQAIYQ 588 (914)
Q Consensus 525 ~~~~l~VP~~~~G~IIGkgG~~IkeI--~~~tga~I~v-~~--~~~-p~-----~~er~V~I~G~~e~V~~A~~~ 588 (914)
....+.+|++ .++|| +|+++ ++.+|+.|.- .+ ..+ +. ..-+.+.+.|+.+++++..+.
T Consensus 290 ~~E~Vvv~~S---~liGk---TL~eL~~r~~~Gv~VlaI~R~g~~l~~~~d~~Lq~GD~LlVvG~~~~i~~l~~~ 358 (552)
T PRK03818 290 RSERVVVTNE---KVLGK---KLRDLHLKNKYGVVISRLNRAGVELVASPDLSLQFGDILNLVGRPEAIDAVANV 358 (552)
T ss_pred EEEEEEEcCh---hccCC---cHHHhcccccCCeEEEEEeECCeecCCCCCCEEecCCEEEEEECHHHHHHHHHH
Confidence 3444555553 45554 78887 5677776543 22 122 11 123589999999999987664
No 151
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.63 E-value=1.2e+02 Score=30.36 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=45.4
Q ss_pred CcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHH
Q psy13906 77 SQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLI 147 (914)
Q Consensus 77 ~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~ 147 (914)
....++|+.++...+- ..+++|.+-.|+-+.+. .+..|.|.|..+.|..|++.+.-+
T Consensus 110 ~~~~~iRv~l~~~i~~-------erl~ei~E~~gvI~Efe-------e~~~V~I~Gdke~Ik~aLKe~s~~ 166 (169)
T PF09869_consen 110 PGFETIRVKLKKPIQE-------ERLQEISEWHGVIFEFE-------EDDKVVIEGDKERIKKALKEFSSF 166 (169)
T ss_pred CCceeEEEecCccchH-------HHHHHHHHHhceeEEec-------CCcEEEEeccHHHHHHHHHHHHHH
Confidence 4456777777777653 55789999999999882 256899999999999999988654
No 152
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=29.97 E-value=55 Score=33.99 Aligned_cols=97 Identities=8% Similarity=0.130 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcc
Q psy13906 492 DSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTER 571 (914)
Q Consensus 492 e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er 571 (914)
+-...+...+.++++.+.-...-. .......+.+.|..+..+.+||+.|.+++.|+--+.+.+.-.. ...-+
T Consensus 62 ~~~~~~~~~L~ell~~m~~~~~i~----v~~~~~~v~~~i~~~~~~~LIG~~Gk~LdALQ~L~n~~l~~~~----g~~~~ 133 (208)
T COG1847 62 KIAQEAKDYLEELLELMDFEVTIT----VSEEGRRVVVSIEGEDAGRLIGKHGKTLDALQYLANLYLNKIG----GKFKR 133 (208)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEE----EeecCcEEEEEecCCchhhhhccCCcchHHHHHHHHHHhhhhc----CcceE
Confidence 344666666667666542210000 0112345667777788999999999999999987766554211 11112
Q ss_pred -eEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 572 -EVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 572 -~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
++-+.+--+.-+..+..+.+.+++.
T Consensus 134 v~ldv~~yRerR~e~L~~LA~~~A~r 159 (208)
T COG1847 134 VTLDVGDYRERRKETLIKLAERAAER 159 (208)
T ss_pred EEEEhhhHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444455555555443
No 153
>KOG1960|consensus
Probab=27.65 E-value=8.2e+02 Score=28.07 Aligned_cols=140 Identities=13% Similarity=0.013 Sum_probs=80.4
Q ss_pred CCchhHHHHHHHhCCeEEeeCC---------CCCee--EEEEEcC-hhHHHHHHHHHHHHHHHhhhcccc----------
Q psy13906 457 KSGETVKKLREESGSKIYISDS---------STPER--IVTVIGS-MDSLFRAFSLITKNIEEFHKNQNK---------- 514 (914)
Q Consensus 457 k~G~~Ik~I~~etga~I~i~~~---------~~~er--vv~I~G~-~e~V~~A~~~I~~~i~~~~~~~~~---------- 514 (914)
.+|.+...|+.++|+.|..--. +..++ +..|.+. .|-+.+|+.+|...+...-...+.
T Consensus 111 TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T~Ei~~~Ai~RIkgv~~~~~~~~n~~~V~i~~~~s 190 (531)
T KOG1960|consen 111 TRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPSTAEITSKAIERIKGVFMQDVEINNVRNVYILVRAS 190 (531)
T ss_pred ccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCccHHHHHHHHhhCccceeecccccccceEEEeecCC
Confidence 6789999999999999877422 22333 4567774 777888888887444331111000
Q ss_pred -----------cCCCCCC--CcceEEEEEecCCcc-ceeeccCCchHHHHHhhcCceEEEcc----CCCCC----CCc--
Q psy13906 515 -----------HLGGNGE--SQLIQLRLIVPASQC-GSIIGKGGSQIKTIRETSGASVYVAS----DMLPN----STE-- 570 (914)
Q Consensus 515 -----------~~~~~~~--~~~~~~~l~VP~~~~-G~IIGkgG~~IkeI~~~tga~I~v~~----~~~p~----~~e-- 570 (914)
.+...|. .....+-+.+|...+ +..=+++-..+..++.++++++-+.. ...|. +.|
T Consensus 191 P~~~i~~~V~~~~f~~G~~Y~~k~~v~~~~P~~~~K~~~~~r~d~~La~~~ie~~i~~l~~Gr~SG~iEP~~G~EsnEPM 270 (531)
T KOG1960|consen 191 PLSEIENKVGVQLFSKGRYYPNKALATDKDPPLYLKIVSHNRKDLTLALQEIESWINPLIDGRRSGRREPNEGNESNEPM 270 (531)
T ss_pred chhhhccccccccccccccchhheecccCCcchhhhhhccCccchhhhhhhhhhhhhhhhccccccccCcccccccCCce
Confidence 0001110 011122223444333 33345666778888889988865532 11222 222
Q ss_pred ceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 571 REVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 571 r~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
=+..+.+.++.+..|.+++..+++..
T Consensus 271 YI~i~h~~~~g~~~A~r~~~nl~~~v 296 (531)
T KOG1960|consen 271 YIFSTHGNGNGENGAPRRKWNLEEKV 296 (531)
T ss_pred eEEeecCCchhhccchhHHHhHHHHH
Confidence 25556678888888988888877653
No 154
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.55 E-value=1.4e+02 Score=29.09 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=35.8
Q ss_pred hhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHH
Q psy13906 15 ETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62 (914)
Q Consensus 15 ~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~ 62 (914)
+.++.|.+-.|+-|.+. ..++|.|.|+.+.|.+|++.|-..+.+
T Consensus 126 eRlqDi~E~hgvIiE~~----E~D~V~i~Gd~drVk~aLke~~~~wke 169 (170)
T COG4010 126 ERLQDIAETHGVIIEFE----EYDLVAIYGDSDRVKKALKEIGSFWKE 169 (170)
T ss_pred HHHHHHHHhhheeEEee----eccEEEEeccHHHHHHHHHHHHHHHhc
Confidence 45667777788888885 356999999999999999999887654
No 155
>KOG1960|consensus
Probab=26.82 E-value=6.4e+02 Score=28.89 Aligned_cols=74 Identities=15% Similarity=-0.031 Sum_probs=50.8
Q ss_pred ecCccc-cccccCCcchHHHHHhhhCCEEEEcCC----CCCCCCC--Cce--EEEEEcCHHHHHHHHHHHHHHHHHHHhc
Q psy13906 713 VPNELI-GAVIGKGGTKIFEIRKISGAMIRISKS----SEEEEDS--NDR--TITMTGTPDAIALAQYLINMSVELLRAN 783 (914)
Q Consensus 713 vp~~~~-g~iIG~~G~~I~~I~~~sga~I~i~~~----~~~~~~~--~~r--~i~I~G~~~~v~~A~~li~~~i~~~~~~ 783 (914)
+|..++ +.+=+++-..+..++.++++++.+.-+ .|+..+. .|- ++.+-++.+.+..|+.++..+.+....+
T Consensus 220 ~P~~~~K~~~~~r~d~~La~~~ie~~i~~l~~Gr~SG~iEP~~G~EsnEPMYI~i~h~~~~g~~~A~r~~~nl~~~v~~~ 299 (531)
T KOG1960|consen 220 DPPLYLKIVSHNRKDLTLALQEIESWINPLIDGRRSGRREPNEGNESNEPMYIFSTHGNGNGENGAPRRKWNLEEKVYIN 299 (531)
T ss_pred CcchhhhhhccCccchhhhhhhhhhhhhhhhccccccccCcccccccCCceeEEeecCCchhhccchhHHHhHHHHHHHH
Confidence 555554 666678888899999999999777332 2333221 222 3444568899999999999998876666
Q ss_pred ccC
Q psy13906 784 LNG 786 (914)
Q Consensus 784 ~~~ 786 (914)
+.+
T Consensus 300 ~sr 302 (531)
T KOG1960|consen 300 LSR 302 (531)
T ss_pred hhh
Confidence 554
No 156
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=26.23 E-value=6.5e+02 Score=25.54 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=61.7
Q ss_pred EEEEEc--ChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 484 IVTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 484 vv~I~G--~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
.++|+| +.+++..|...+.+++++..-... ....+++=.|-...++.= -.+..|.....-.+.-.
T Consensus 57 KiviTGaks~e~a~~a~~~i~~~L~~~g~~~~--------~~~~~v~Nivat~~l~~~-----i~L~~la~~~~~~~~Ye 123 (174)
T cd04516 57 KMVCTGAKSEDDSKLAARKYARIIQKLGFPAK--------FTDFKIQNIVGSCDVKFP-----IRLEGLAHAHKQFSSYE 123 (174)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcCCCCC--------CCceEEEEEEEEEECCCc-----ccHHHHHHhChhccEeC
Confidence 378888 578899999999999987532210 112333333333333332 23666666554556666
Q ss_pred cCCCCCC--------------CcceEEEec--CHHHHHHHHHHHHHHhcc
Q psy13906 562 SDMLPNS--------------TEREVNIKG--VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 562 ~~~~p~~--------------~er~V~I~G--~~e~V~~A~~~I~~~l~e 595 (914)
++.+|.- ..-.|.|+| +.+.+++|+..|..+|.+
T Consensus 124 PE~fPgliyr~~~pk~~~liF~sGkvvitGaks~~~~~~a~~~i~p~L~~ 173 (174)
T cd04516 124 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKSREEIYQAFENIYPILLQ 173 (174)
T ss_pred CccCceEEEEecCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 6666641 234677787 578899999999988865
No 157
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=24.76 E-value=2e+02 Score=25.47 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=42.0
Q ss_pred cchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHH
Q psy13906 281 GTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVEL 334 (914)
Q Consensus 281 G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~ 334 (914)
=..+.++-+..+++++...++-+.-..++..++|+|+..++-.|.+.+..+++.
T Consensus 33 ~~~~~~i~~~l~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~l~~ 86 (88)
T PF02749_consen 33 LEEAEEIFEKLGLEVEWLVKDGDRVEPGDVILEIEGPARALLTAERTALNFLQR 86 (88)
T ss_dssp HHHHHHHHHHCTEEEEESS-TT-EEETTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccEEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 355777877789999988654433345789999999999999999999888864
No 158
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=24.71 E-value=7.4e+02 Score=25.10 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=60.8
Q ss_pred EEEEEcC--hhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEc
Q psy13906 39 IVTVIGS--MDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 116 (914)
Q Consensus 39 vV~I~G~--~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~ 116 (914)
.+.|+|. .+.+.+|.+.+.+++++..-.. ......+++-.+-....+.= -.+.+|...+.-.+...
T Consensus 57 KiviTGaks~~~~~~a~~~~~~~l~~~g~~~-------~~~~~f~v~nIvat~~~~~~-----i~L~~la~~~~~~~~Ye 124 (174)
T cd04517 57 KITITGATSEEEAKQAARRAARLLQKLGFKV-------VRFSNFRVVNVLATCSMPFP-----IRLDELAAKNRSSASYE 124 (174)
T ss_pred eEEEEccCCHHHHHHHHHHHHHHHHHcCCCc-------ccCCceEEEEEEEEEeCCCc-----ccHHHHHHhchhhcEeC
Confidence 5677776 6788999989988887754321 01123444444444333322 23677766555555555
Q ss_pred cCCCCC--------------CCCceEEEecC--HHHHHHHHHHHHHHhc
Q psy13906 117 SDMLPN--------------STEREVNIKGV--PDAVTQAIYQICLIMV 149 (914)
Q Consensus 117 ~~~~~~--------------~~dr~V~I~G~--~~~V~~A~~~I~~~l~ 149 (914)
+|..|. -....|.|+|. .+.+.+|++.|..+|.
T Consensus 125 PE~fPgliyr~~~p~~t~lIF~sGkivitGaks~~~~~~a~~~i~pil~ 173 (174)
T cd04517 125 PELHPGVVYRITGPRATLSIFSTGSVTVTGARSMEDVREAVEKIYPIVF 173 (174)
T ss_pred CccCCEEEEEECCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 544332 23557888886 5789999999988775
No 159
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=24.15 E-value=2.1e+02 Score=25.29 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=41.6
Q ss_pred CcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHH
Q psy13906 725 GGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVEL 779 (914)
Q Consensus 725 ~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~ 779 (914)
|=.-+.+|-+..|++++...+....-..++.+++|+|+..++..|...++..++.
T Consensus 32 G~~~~~~i~~~l~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~l~~ 86 (88)
T PF02749_consen 32 GLEEAEEIFEKLGLEVEWLVKDGDRVEPGDVILEIEGPARALLTAERTALNFLQR 86 (88)
T ss_dssp SHHHHHHHHHHCTEEEEESS-TT-EEETTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhccEEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 4456778888889999987553222234668899999999999999999988864
No 160
>PTZ00084 40S ribosomal protein S3; Provisional
Probab=23.11 E-value=59 Score=34.29 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEE
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIY 29 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~ 29 (914)
|+..+-|.|||++|..|++|+++-.-.+.
T Consensus 50 I~tarPg~vIG~~G~~i~~l~~~L~k~~~ 78 (220)
T PTZ00084 50 IRATRTREVLGDKGRRIRELTSLLQKRFG 78 (220)
T ss_pred EEECCCccEEcCCchHHHHHHHHHHHHhC
Confidence 34567799999999999999988655443
No 161
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=22.61 E-value=8.1e+02 Score=24.94 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred EEEEc--ChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCce-EEEc
Q psy13906 485 VTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGAS-VYVA 561 (914)
Q Consensus 485 v~I~G--~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~-I~v~ 561 (914)
++++| +.+++.+|...+.+.+++....... ++.++++=.|-....+.-+- +..|.-..|.. +...
T Consensus 64 ~VcTGaKs~ed~~~av~~~~~~L~~~g~~~~~-------~p~i~iQNIVaSadL~~~ln-----L~~iA~~lg~e~~eYE 131 (185)
T COG2101 64 VVCTGAKSVEDVHRAVKKLAKKLKDGGIDIDF-------EPEIKVQNIVASADLGVELN-----LNAIAIGLGLENIEYE 131 (185)
T ss_pred EEEeccCcHHHHHHHHHHHHHHHHhcCcCcCC-------CCceEEEEEEEEeccCcccc-----HHHHHHhccccccccc
Q ss_pred cCCCCC--------------CCcceEEEec--CHHHHHHHHHHHHHHhcc
Q psy13906 562 SDMLPN--------------STEREVNIKG--VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 562 ~~~~p~--------------~~er~V~I~G--~~e~V~~A~~~I~~~l~e 595 (914)
++++|. -..-.+.|+| .++.+++|.+.|...+.+
T Consensus 132 PEqFPGLVYRl~~P~VV~LiF~SGK~ViTGaK~~ed~~~Av~~i~~~L~e 181 (185)
T COG2101 132 PEQFPGLVYRLDEPRVVLLLFGSGKLVITGAKSEEDAEQAVEKIQSRLEE 181 (185)
T ss_pred cccCCeeEEEcCCCCEEEEEecCCcEEEecCCCHHHHHHHHHHHHHHHHH
No 162
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=22.26 E-value=78 Score=34.34 Aligned_cols=29 Identities=45% Similarity=0.456 Sum_probs=22.7
Q ss_pred eEEEEEec-CCccceeeccCCchHHHHHhh
Q psy13906 525 IQLRLIVP-ASQCGSIIGKGGSQIKTIRET 553 (914)
Q Consensus 525 ~~~~l~VP-~~~~G~IIGkgG~~IkeI~~~ 553 (914)
....+.|. .++-+-|||++|++||+|...
T Consensus 221 i~~~i~v~~~s~k~iiig~~g~~ik~i~~~ 250 (270)
T TIGR00436 221 IHALISVERESQKKIIIGKNGSMIKAIGIA 250 (270)
T ss_pred EEEEEEECcCCceeEEEcCCcHHHHHHHHH
Confidence 55667777 467788899999999987654
No 163
>PLN00062 TATA-box-binding protein; Provisional
Probab=22.11 E-value=6.5e+02 Score=25.69 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEEc--ChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEcc
Q psy13906 485 VTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 562 (914)
Q Consensus 485 v~I~G--~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~ 562 (914)
++|+| +.+++..|...+.+++++..-..... ..+++=.|-...++.=|- +..|.....-.+.-.+
T Consensus 58 iviTGaks~e~a~~a~~~~~~~L~~lg~~~~~~--------~f~v~NIvas~~l~~~i~-----L~~la~~~~~~~~YeP 124 (179)
T PLN00062 58 MVCTGAKSEHDSKLAARKYARIIQKLGFPAKFK--------DFKIQNIVGSCDVKFPIR-----LEGLAYAHGAFSSYEP 124 (179)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCCCcCCC--------ccEEEEEEEEEECCCccc-----HHHHHHhchhhcccCc
Q ss_pred CCCCC--------------CCcceEEEec--CHHHHHHHHHHHHHHhcc
Q psy13906 563 DMLPN--------------STEREVNIKG--VPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 563 ~~~p~--------------~~er~V~I~G--~~e~V~~A~~~I~~~l~e 595 (914)
+.+|. -..-.|.|+| +.+.+++|+..|..+|.+
T Consensus 125 E~fPgliyr~~~pk~~~liF~sGkvvitGaks~~~~~~ai~~i~p~L~~ 173 (179)
T PLN00062 125 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREEIYTAFENIYPVLTE 173 (179)
T ss_pred ccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHHHH
No 164
>COG1159 Era GTPase [General function prediction only]
Probab=21.93 E-value=1.6e+02 Score=32.49 Aligned_cols=37 Identities=41% Similarity=0.579 Sum_probs=27.5
Q ss_pred ceEEEEEeecc-ccceeeccCchhHHHHH--------hhcCcEEEE
Q psy13906 79 LIQLRLIVPAS-QCGSIIGKGGSQIKTIR--------ETSGASVYV 115 (914)
Q Consensus 79 ~~~~~l~Vp~~-~vg~IIGk~G~~Ik~I~--------~~sga~I~v 115 (914)
.....+.|+.+ +-+-||||+|+.||+|- +-.+++|++
T Consensus 228 ~I~a~I~Ver~sQK~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L 273 (298)
T COG1159 228 KIHATIYVERESQKGIIIGKNGAMIKKIGTAARKDIEKLLGCKVYL 273 (298)
T ss_pred EEEEEEEEecCCccceEECCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 34555778776 77999999999999854 455666666
No 165
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=21.25 E-value=88 Score=33.93 Aligned_cols=29 Identities=41% Similarity=0.426 Sum_probs=23.0
Q ss_pred eEEEEEeecc-ccceeeccCchhHHHHHhh
Q psy13906 80 IQLRLIVPAS-QCGSIIGKGGSQIKTIRET 108 (914)
Q Consensus 80 ~~~~l~Vp~~-~vg~IIGk~G~~Ik~I~~~ 108 (914)
....+.|..+ +-+.|||++|+.||+|...
T Consensus 221 i~~~i~v~~~s~k~iiig~~g~~ik~i~~~ 250 (270)
T TIGR00436 221 IHALISVERESQKKIIIGKNGSMIKAIGIA 250 (270)
T ss_pred EEEEEEECcCCceeEEEcCCcHHHHHHHHH
Confidence 4566777776 6689999999999997654
No 166
>KOG1423|consensus
Probab=20.73 E-value=89 Score=34.59 Aligned_cols=33 Identities=36% Similarity=0.607 Sum_probs=26.0
Q ss_pred cceEEEEEecC-CccceeeccCCchHHHHHhhcC
Q psy13906 523 QLIQLRLIVPA-SQCGSIIGKGGSQIKTIRETSG 555 (914)
Q Consensus 523 ~~~~~~l~VP~-~~~G~IIGkgG~~IkeI~~~tg 555 (914)
.....++.+|. ++...||||+|..|++|-++.+
T Consensus 326 l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~ 359 (379)
T KOG1423|consen 326 LFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRAN 359 (379)
T ss_pred EEEEEEEEcCCCcceeEEEcCCCccHHHHHHHHH
Confidence 35677888996 5666779999999999987654
No 167
>CHL00048 rps3 ribosomal protein S3
Probab=20.52 E-value=74 Score=33.48 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHh
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 63 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~ 63 (914)
|+..+-|.|||++|++|++|++.-.-.....+....=.++.|.-+.-+..-....|...++..
T Consensus 72 I~~~~Pg~vIG~~g~~i~~l~~~L~k~~~~~~~~i~I~v~ev~~p~~~A~~iA~~ia~~Le~r 134 (214)
T CHL00048 72 IYTGFPKLLIERKGRGIEELQINLQKELNSVNRKLNINITEVKKPYGEPNILAEYIAGQLENR 134 (214)
T ss_pred EEECCCceEECCCcHhHHHHHHHHHHHhCCCCceEEEEEEEecCCCcCHHHHHHHHHHHHhcC
Done!