Query psy13906
Match_columns 914
No_of_seqs 335 out of 2969
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:30:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 1.8E-23 6.3E-28 208.6 15.8 160 524-784 2-161 (163)
2 2jzx_A Poly(RC)-binding protei 99.9 4.5E-24 1.6E-28 212.3 10.3 157 438-595 3-159 (160)
3 3krm_A Insulin-like growth fac 99.9 5E-23 1.7E-27 205.4 12.4 152 439-596 2-157 (163)
4 2jvz_A KH type-splicing, FAR u 99.9 2.1E-22 7.2E-27 201.1 16.9 160 525-781 2-162 (164)
5 2anr_A Neuro-oncological ventr 99.9 2.3E-23 7.9E-28 210.9 9.4 160 438-597 4-177 (178)
6 1j4w_A FUSE binding protein; s 99.9 1E-22 3.4E-27 205.4 12.6 173 524-777 2-174 (174)
7 3n89_A Defective in GERM LINE 99.9 2.4E-22 8.3E-27 220.8 15.3 220 259-593 27-259 (376)
8 2anr_A Neuro-oncological ventr 99.9 2.2E-22 7.5E-27 203.7 13.9 169 523-778 4-174 (178)
9 3n89_A Defective in GERM LINE 99.9 3.6E-22 1.2E-26 219.5 14.8 223 434-777 24-259 (376)
10 2jzx_A Poly(RC)-binding protei 99.9 2.4E-22 8.2E-27 199.8 11.2 149 1-150 11-159 (160)
11 2jvz_A KH type-splicing, FAR u 99.9 1.7E-22 5.7E-27 201.8 9.9 155 440-595 2-160 (164)
12 1j4w_A FUSE binding protein; s 99.9 3.8E-22 1.3E-26 201.2 11.2 154 440-593 3-174 (174)
13 2qnd_A FMR1 protein; KH domain 99.7 2.8E-17 9.5E-22 159.6 9.3 137 524-779 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.6 1.6E-16 5.5E-21 154.3 8.0 133 440-595 4-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.5 1.7E-14 5.7E-19 148.8 8.3 143 440-596 34-192 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.5 2.7E-14 9.3E-19 147.2 9.6 137 1-151 40-192 (219)
17 1dtj_A RNA-binding neurooncolo 99.5 9.9E-14 3.4E-18 119.6 7.6 73 706-778 2-74 (76)
18 1zzk_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 117.9 10.2 74 704-780 4-77 (82)
19 1ec6_A RNA-binding protein NOV 99.4 2.4E-13 8.3E-18 120.3 8.2 76 707-782 3-78 (87)
20 1x4n_A FAR upstream element bi 99.4 4.1E-13 1.4E-17 120.0 8.8 74 704-780 12-85 (92)
21 1wvn_A Poly(RC)-binding protei 99.4 3.3E-13 1.1E-17 118.0 7.5 74 704-780 3-76 (82)
22 2p2r_A Poly(RC)-binding protei 99.4 3.7E-13 1.3E-17 115.9 7.1 71 705-778 3-73 (76)
23 2hh2_A KH-type splicing regula 99.4 9.5E-13 3.2E-17 121.0 8.7 71 708-778 8-78 (107)
24 1j5k_A Heterogeneous nuclear r 99.4 7E-13 2.4E-17 117.7 7.4 74 704-780 11-84 (89)
25 1tua_A Hypothetical protein AP 99.4 6.2E-13 2.1E-17 133.7 7.9 142 441-596 5-161 (191)
26 1tua_A Hypothetical protein AP 99.3 1.8E-12 6.1E-17 130.4 9.7 137 1-151 10-161 (191)
27 2axy_A Poly(RC)-binding protei 99.3 1.4E-12 4.6E-17 111.3 7.5 69 705-778 3-71 (73)
28 2dgr_A Ring finger and KH doma 99.3 1.7E-12 5.9E-17 113.1 6.0 68 704-777 7-74 (83)
29 2ctm_A Vigilin; K homology typ 99.3 8.9E-12 3E-16 111.7 10.8 77 703-783 13-89 (95)
30 2hh3_A KH-type splicing regula 99.3 3.8E-12 1.3E-16 116.4 8.4 71 708-781 12-82 (106)
31 2hh2_A KH-type splicing regula 99.3 3.7E-12 1.3E-16 117.0 7.7 81 525-610 7-89 (107)
32 2axy_A Poly(RC)-binding protei 99.3 1.4E-12 4.8E-17 111.2 4.4 70 438-507 3-72 (73)
33 1we8_A Tudor and KH domain con 99.3 1.1E-11 3.8E-16 113.3 10.2 77 704-781 12-88 (104)
34 2ctl_A Vigilin; K homology typ 99.3 1.3E-11 4.5E-16 111.1 10.4 78 704-783 14-91 (97)
35 2opv_A KHSRP protein; KH domai 99.3 1.1E-11 3.7E-16 109.1 9.4 73 705-778 12-84 (85)
36 2cte_A Vigilin; K homology typ 99.3 1E-11 3.5E-16 111.3 8.9 75 704-783 14-88 (94)
37 1x4m_A FAR upstream element bi 99.3 6.3E-12 2.2E-16 112.7 7.3 72 705-777 13-84 (94)
38 2p2r_A Poly(RC)-binding protei 99.3 4.8E-12 1.6E-16 108.9 6.0 72 523-595 3-74 (76)
39 1zzk_A Heterogeneous nuclear r 99.3 8.6E-12 2.9E-16 109.0 7.5 73 523-596 5-77 (82)
40 1wvn_A Poly(RC)-binding protei 99.3 6.6E-12 2.3E-16 109.7 6.8 73 523-596 4-76 (82)
41 1vig_A Vigilin; RNA-binding pr 99.2 1E-11 3.6E-16 105.2 7.0 68 705-777 3-70 (71)
42 1dtj_A RNA-binding neurooncolo 99.2 1.4E-11 4.9E-16 106.0 7.7 72 262-333 3-74 (76)
43 2opv_A KHSRP protein; KH domai 99.2 2.7E-11 9.1E-16 106.6 8.7 73 523-595 12-85 (85)
44 1j5k_A Heterogeneous nuclear r 99.2 8.9E-12 3E-16 110.6 5.3 74 522-596 11-84 (89)
45 1ec6_A RNA-binding protein NOV 99.2 3.3E-11 1.1E-15 106.5 8.4 75 262-336 3-77 (87)
46 1x4n_A FAR upstream element bi 99.2 2.2E-11 7.6E-16 108.7 7.3 74 522-596 12-85 (92)
47 1x4m_A FAR upstream element bi 99.2 3.3E-11 1.1E-15 108.1 6.5 75 522-596 12-87 (94)
48 2ctk_A Vigilin; K homology typ 99.2 5.5E-11 1.9E-15 108.4 7.9 73 706-783 16-88 (104)
49 2hh3_A KH-type splicing regula 99.1 4.7E-11 1.6E-15 109.1 6.3 72 524-596 10-81 (106)
50 2dgr_A Ring finger and KH doma 99.1 7.1E-11 2.4E-15 102.9 6.0 68 260-333 8-75 (83)
51 2ctj_A Vigilin; K homology typ 99.1 2.2E-10 7.6E-15 102.4 8.9 74 703-781 13-87 (95)
52 2ctl_A Vigilin; K homology typ 99.1 1.1E-10 3.9E-15 105.0 7.0 72 524-595 16-87 (97)
53 2ctm_A Vigilin; K homology typ 99.1 3.6E-10 1.2E-14 101.2 9.9 75 258-336 13-87 (95)
54 2ctf_A Vigilin; K homology typ 99.1 6.3E-12 2.1E-16 114.1 -1.9 88 487-596 5-93 (102)
55 2cte_A Vigilin; K homology typ 99.1 2.4E-10 8.4E-15 102.3 7.9 73 259-336 14-86 (94)
56 1vig_A Vigilin; RNA-binding pr 99.1 2.1E-10 7.3E-15 97.1 6.9 67 261-332 4-70 (71)
57 2ctf_A Vigilin; K homology typ 99.0 6.3E-10 2.2E-14 100.9 9.6 73 705-785 25-98 (102)
58 1we8_A Tudor and KH domain con 99.0 5.9E-10 2E-14 101.8 8.8 74 262-336 15-88 (104)
59 2ctk_A Vigilin; K homology typ 98.9 5.6E-10 1.9E-14 101.7 5.3 73 438-510 15-87 (104)
60 2ctj_A Vigilin; K homology typ 98.9 2.9E-09 9.8E-14 95.2 8.9 74 258-336 13-87 (95)
61 2cpq_A FragIle X mental retard 98.8 7.5E-09 2.6E-13 90.8 6.1 66 703-776 11-78 (91)
62 2cpq_A FragIle X mental retard 98.5 1.3E-07 4.4E-12 83.0 5.7 66 257-330 10-77 (91)
63 2yqr_A KIAA0907 protein; struc 98.4 1.4E-06 4.7E-11 80.8 10.3 79 704-782 9-102 (119)
64 1k1g_A SF1-BO isoform; splicin 98.3 1.7E-06 5.9E-11 81.7 8.4 75 704-778 4-98 (131)
65 2yqr_A KIAA0907 protein; struc 98.2 6E-06 2E-10 76.5 10.3 78 260-337 10-102 (119)
66 1k1g_A SF1-BO isoform; splicin 98.1 5.3E-06 1.8E-10 78.4 8.4 75 259-333 4-98 (131)
67 3v69_A Protein filia; RNA-bind 98.0 1.9E-05 6.5E-10 73.3 8.7 72 708-783 57-128 (140)
68 3u1k_A Polyribonucleotide nucl 97.6 0.00013 4.4E-09 86.3 9.7 94 48-148 535-629 (630)
69 2bl5_A MGC83862 protein, quaki 97.5 9E-05 3.1E-09 70.3 5.8 71 707-777 2-99 (140)
70 2bl5_A MGC83862 protein, quaki 97.5 0.00012 4.3E-09 69.4 6.1 71 80-150 2-101 (140)
71 3u1k_A Polyribonucleotide nucl 97.4 0.00023 7.8E-09 84.2 9.1 64 523-593 565-629 (630)
72 3v69_A Protein filia; RNA-bind 96.9 0.0029 1E-07 58.7 8.6 70 263-336 57-126 (140)
73 4aid_A Polyribonucleotide nucl 96.6 0.0016 5.5E-08 77.9 5.5 65 79-150 569-634 (726)
74 4aid_A Polyribonucleotide nucl 96.5 0.0019 6.5E-08 77.2 5.6 67 523-596 568-635 (726)
75 2cxc_A NUSA; transcription ter 96.4 0.00086 2.9E-08 64.0 1.2 97 2-116 43-139 (144)
76 2cxc_A NUSA; transcription ter 96.0 0.0013 4.4E-08 62.8 0.7 104 440-561 36-139 (144)
77 1k0r_A NUSA; two component arr 94.2 0.035 1.2E-06 60.7 5.0 96 4-118 249-345 (366)
78 2asb_A Transcription elongatio 94.2 0.028 9.5E-07 58.3 3.8 96 4-118 126-222 (251)
79 2asb_A Transcription elongatio 93.6 0.05 1.7E-06 56.4 4.5 41 707-747 184-224 (251)
80 3cdi_A Polynucleotide phosphor 92.1 0.063 2.1E-06 64.5 3.1 64 79-149 559-623 (723)
81 3cdi_A Polynucleotide phosphor 91.5 0.08 2.7E-06 63.6 3.0 65 524-595 559-624 (723)
82 1e3p_A Guanosine pentaphosphat 91.3 0.042 1.4E-06 66.3 0.4 63 79-148 597-660 (757)
83 1k0r_A NUSA; two component arr 90.8 0.12 4.1E-06 56.6 3.3 96 449-563 249-345 (366)
84 1e3p_A Guanosine pentaphosphat 89.6 0.078 2.7E-06 64.0 0.7 63 524-593 597-660 (757)
85 1hh2_P NUSA, N utilization sub 87.1 0.34 1.2E-05 52.8 3.6 94 4-117 245-340 (344)
86 1hh2_P NUSA, N utilization sub 85.1 0.42 1.4E-05 52.1 3.1 96 449-563 245-341 (344)
87 1ytb_A Protein (tata binding p 41.3 2E+02 0.007 27.9 11.3 100 484-596 60-177 (180)
88 1ytb_A Protein (tata binding p 37.9 2.2E+02 0.0077 27.6 10.9 101 38-151 59-177 (180)
89 3eik_A Tata-box-binding protei 35.9 2.2E+02 0.0076 28.6 10.7 99 485-596 99-215 (218)
90 1wh9_A 40S ribosomal protein S 35.6 14 0.00047 32.2 1.6 28 80-107 35-62 (92)
91 3eik_A Tata-box-binding protei 33.2 2.3E+02 0.008 28.4 10.4 100 39-151 98-215 (218)
92 2pt7_G HP1451, hypothetical pr 32.9 19 0.00067 34.3 2.3 66 80-150 33-98 (152)
93 4hhu_A OR280; engineered prote 32.8 2.7E+02 0.0091 24.8 13.2 98 35-150 40-148 (170)
94 2pt7_G HP1451, hypothetical pr 31.8 16 0.00054 34.9 1.5 66 526-596 34-99 (152)
95 3gku_A Probable RNA-binding pr 30.0 31 0.0011 35.0 3.4 109 35-149 49-158 (225)
96 2ba0_A Archeal exosome RNA bin 28.5 1E+02 0.0034 31.3 7.0 57 264-329 138-194 (229)
97 1rm1_A Tata-box binding protei 27.4 2.3E+02 0.0078 28.9 9.3 100 39-151 120-237 (240)
98 1wh9_A 40S ribosomal protein S 27.3 22 0.00076 30.8 1.5 27 708-734 36-62 (92)
99 1rm1_A Tata-box binding protei 26.6 2.3E+02 0.008 28.9 9.2 100 484-596 120-237 (240)
100 2ba0_A Archeal exosome RNA bin 25.5 1.2E+02 0.0041 30.7 6.9 56 709-773 138-193 (229)
101 3gku_A Probable RNA-binding pr 22.3 11 0.00037 38.5 -1.7 65 442-506 94-158 (225)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=208.56 Aligned_cols=160 Identities=25% Similarity=0.388 Sum_probs=135.4
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccCCCCCCCC
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~~~~ 603 (914)
+.+++|+||.+++|.||||+|++||+|+++|||+|++.++..+++.+|.|+|+|+++++.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~---- 77 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFF---- 77 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSS----
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc----
Confidence 4578999999999999999999999999999999999987778899999999999999999999999999875100
Q ss_pred CCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhhhcccccCCCCCCCcc
Q psy13906 604 PYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQ 683 (914)
Q Consensus 604 py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~ 683 (914)
.|.
T Consensus 78 --~~~--------------------------------------------------------------------------- 80 (163)
T 3krm_A 78 --GPK--------------------------------------------------------------------------- 80 (163)
T ss_dssp --CSS---------------------------------------------------------------------------
T ss_pred --ccc---------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCH
Q psy13906 684 NQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTP 763 (914)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~ 763 (914)
.....+.++.||.+++|+|||++|++|++|++.|||+|.|++...+ ..+.++.|+|+|++
T Consensus 81 -------------------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~-~~~~~~~v~I~G~~ 140 (163)
T 3krm_A 81 -------------------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP-DENDQVIVKIIGHF 140 (163)
T ss_dssp -------------------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC-CTTSEEEEEEEECH
T ss_pred -------------------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCC-CCCCceEEEEEeCH
Confidence 0124466899999999999999999999999999999999875332 23344589999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q psy13906 764 DAIALAQYLINMSVELLRANL 784 (914)
Q Consensus 764 ~~v~~A~~li~~~i~~~~~~~ 784 (914)
++|+.|+.+|+++|+..+...
T Consensus 141 ~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 141 YASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998776543
No 2
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=212.29 Aligned_cols=157 Identities=51% Similarity=0.884 Sum_probs=138.6
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCC
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLG 517 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~ 517 (914)
.+++++|+||.+.+|.|||++|++|++|+++|||+|+|++.++.+|+|+|+|+.++|.+|+.+|.+++.+........ .
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~~~-~ 81 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTN-S 81 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCCS-S
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhhccccCCC-C
Confidence 567899999999999999999999999999999999999888889999999999999999999999988743211000 0
Q ss_pred CCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 518 GNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 518 ~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e 595 (914)
........+++|.||.+++|+||||+|++||+|+++|||+|++.++.+|.++++.|+|+|++++|.+|+.+|.+++.|
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 001234689999999999999999999999999999999999998778889999999999999999999999999876
No 3
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=205.39 Aligned_cols=152 Identities=28% Similarity=0.406 Sum_probs=134.1
Q ss_pred cceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC---CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhccccc
Q psy13906 439 QRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS---STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKH 515 (914)
Q Consensus 439 ~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~---~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~ 515 (914)
+.+++|+||.+.+|.|||++|++|++|+++|||+|+|.+. ++.+|+|+|+|+++++.+|+.+|.+++.+.....
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~--- 78 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFG--- 78 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSC---
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc---
Confidence 3578999999999999999999999999999999999874 4689999999999999999999999988752110
Q ss_pred CCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcc-eEEEecCHHHHHHHHHHHHHHhc
Q psy13906 516 LGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTER-EVNIKGVPDAVTQAIYQICLIMV 594 (914)
Q Consensus 516 ~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er-~V~I~G~~e~V~~A~~~I~~~l~ 594 (914)
.......+.+|.||.+++|+|||++|++|++|+++|||+|+++++..|+++++ .|+|+|++++|..|+.+|.+++.
T Consensus 79 ---~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 79 ---PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILA 155 (163)
T ss_dssp ---SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred ---cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 11223567899999999999999999999999999999999998777776665 89999999999999999999998
Q ss_pred cC
Q psy13906 595 DS 596 (914)
Q Consensus 595 e~ 596 (914)
+.
T Consensus 156 ~~ 157 (163)
T 3krm_A 156 QV 157 (163)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=201.06 Aligned_cols=160 Identities=24% Similarity=0.399 Sum_probs=131.1
Q ss_pred eEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCC-CCCCCcceEEEecCHHHHHHHHHHHHHHhccCCCCCCCC
Q psy13906 525 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDM-LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603 (914)
Q Consensus 525 ~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~-~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~~~~ 603 (914)
++.+|+||.+++|+||||+|++||+|+++|||+|++.++. .+...+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~---- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG---- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC----
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC----
Confidence 4779999999999999999999999999999999998753 35677899999999999999999999999875211
Q ss_pred CCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhhhcccccCCCCCCCcc
Q psy13906 604 PYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQ 683 (914)
Q Consensus 604 py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~ 683 (914)
+|.|.. .+ .+
T Consensus 78 ~~~~~~-----------------------~~------------------------------------------~~----- 87 (164)
T 2jvz_A 78 GFGDRN-----------------------EY------------------------------------------GS----- 87 (164)
T ss_dssp CCSSCS-----------------------SC------------------------------------------TT-----
T ss_pred CCCCcc-----------------------cc------------------------------------------CC-----
Confidence 000000 00 00
Q ss_pred ccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCH
Q psy13906 684 NQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTP 763 (914)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~ 763 (914)
....+.++.||.+++|+||||+|++|++|++.|||+|.|++.. +...++.|+|+|++
T Consensus 88 --------------------~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~~~~~~~v~I~G~~ 144 (164)
T 2jvz_A 88 --------------------RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPP 144 (164)
T ss_dssp --------------------SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---TTSSEEEEEEESCH
T ss_pred --------------------CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---CCCCcEEEEEEcCH
Confidence 0012357889999999999999999999999999999999653 24457999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13906 764 DAIALAQYLINMSVELLR 781 (914)
Q Consensus 764 ~~v~~A~~li~~~i~~~~ 781 (914)
++++.|+.+|+++|+..+
T Consensus 145 ~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 145 DRCEHAARIINDLLQSLR 162 (164)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999997654
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.88 E-value=2.3e-23 Score=210.90 Aligned_cols=160 Identities=33% Similarity=0.494 Sum_probs=133.8
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC-----CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcc
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS-----STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQ 512 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~-----~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~ 512 (914)
.+++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. ++.+|+|+|+|+.++|.+|+.+|.+++.+.....
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 83 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 83 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCcc
Confidence 45789999999999999999999999999999999999864 4678999999999999999999999987643211
Q ss_pred ccc-------C-CCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCC-CCCCCcceEEEecCHHHHH
Q psy13906 513 NKH-------L-GGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDM-LPNSTEREVNIKGVPDAVT 583 (914)
Q Consensus 513 ~~~-------~-~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~-~p~~~er~V~I~G~~e~V~ 583 (914)
... . .....+...+.+|.||.+++|+||||+|++||+|+++|||+|++.++. .+++.++.|+|+|++++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~ 163 (178)
T 2anr_A 84 AKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNR 163 (178)
T ss_dssp ----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHH
T ss_pred ccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHH
Confidence 000 0 001123357889999999999999999999999999999999998753 4567889999999999999
Q ss_pred HHHHHHHHHhccCC
Q psy13906 584 QAIYQICLIMVDSP 597 (914)
Q Consensus 584 ~A~~~I~~~l~e~~ 597 (914)
+|+.+|.+++.++|
T Consensus 164 ~A~~~I~~~i~e~p 177 (178)
T 2anr_A 164 KAVELIIQKIQEDP 177 (178)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999986
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=1e-22 Score=205.41 Aligned_cols=173 Identities=30% Similarity=0.463 Sum_probs=130.2
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccCCCCCCCC
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~~~~ 603 (914)
..+++|+||.+++|.||||+|++||+|+++|||+|+|.++ .+.+.+|.|+|+|++++|.+|+.+|.+++.+.....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~--- 77 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-DGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGN--- 77 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECC-TTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecC-CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCC---
Confidence 4678999999999999999999999999999999999864 356788999999999999999999999998752100
Q ss_pred CCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhhhcccccCCCCCCCcc
Q psy13906 604 PYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQ 683 (914)
Q Consensus 604 py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~ 683 (914)
+..|.|. +. +. .++.
T Consensus 78 ~~~~~p~---------~~---------------------------~~-----~~~~------------------------ 92 (174)
T 1j4w_A 78 PGGPGPG---------GR---------------------------GR-----GRGQ------------------------ 92 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCC---------CC---------------------------CC-----CCCC------------------------
Confidence 0000000 00 00 0000
Q ss_pred ccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCH
Q psy13906 684 NQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTP 763 (914)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~ 763 (914)
.+|+. ++ .....+.+|.||.+++|+||||+|++|++|++.|||+|.|++..++..++.++.|+|+|++
T Consensus 93 ----~~~~~--~~------~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~ 160 (174)
T 1j4w_A 93 ----GNWNM--GP------PGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTP 160 (174)
T ss_dssp -----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCH
T ss_pred ----Ccccc--CC------CCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCH
Confidence 00000 00 0234678999999999999999999999999999999999976544445678999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy13906 764 DAIALAQYLINMSV 777 (914)
Q Consensus 764 ~~v~~A~~li~~~i 777 (914)
++++.|+.||+++|
T Consensus 161 ~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 161 QQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 7
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=2.4e-22 Score=220.83 Aligned_cols=220 Identities=11% Similarity=0.148 Sum_probs=162.0
Q ss_pred ccceEEEEEecccccccccccCc--chHHHHHhhhCCEEEEcCCC--CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHH
Q psy13906 259 QNQITKEMTVPNELIGAVIGKGG--TKIFEIRKISGAMIRISKSS--EEEEDSNDRTITMTGTPDAIALAQYLINMSVEL 334 (914)
Q Consensus 259 ~~~~~~~i~Ip~~~vg~IIGk~G--~~I~~I~~~tga~I~i~~~~--~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~ 334 (914)
.+.++.++.||.++|++|||++| ++|++|+++|||+|+|++.. ..........|+|+|.+++|++|+.+|.+++.
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P- 105 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH- 105 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE-
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC-
Confidence 45789999999999999999999 99999999999999998754 11123456899999999999999999875320
Q ss_pred HHhccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhhhhhhhHHhhcCCCCcCccccccccCCCcCCCCCCCCCCC
Q psy13906 335 LRANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLSALGGLSDLLGGGSSGGG 414 (914)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (914)
T Consensus 106 -------------------------------------------------------------------------------- 105 (376)
T 3n89_A 106 -------------------------------------------------------------------------------- 105 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCccccccccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCC----CeeEEEEEcC
Q psy13906 415 SGNSGGFGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSST----PERIVTVIGS 490 (914)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~----~ervv~I~G~ 490 (914)
+++.+.+|...++. ..-+..|.+ ++.++++|.|+.... ....|+|+|.
T Consensus 106 -------------------------l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~ 157 (376)
T 3n89_A 106 -------------------------FTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAR 157 (376)
T ss_dssp -------------------------EEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEE
T ss_pred -------------------------ceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcC
Confidence 01111111111000 000123433 567899999864321 3678999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCC--chHHHHHhhcCceEEEccCCCCC-
Q psy13906 491 MDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGG--SQIKTIRETSGASVYVASDMLPN- 567 (914)
Q Consensus 491 ~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG--~~IkeI~~~tga~I~v~~~~~p~- 567 (914)
..++..|+.++..+++...... ......+++.|.|+..+|..|||++| ..|++|+++|||+|.|++...+.
T Consensus 158 ~~nv~~akeA~~~Ll~~l~~~e------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d 231 (376)
T 3n89_A 158 EKNQHELIEAAKRLNEILFRES------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE 231 (376)
T ss_dssp GGGHHHHHHHHHHHHHHHCC--------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC-------
T ss_pred hhhHHHHHHHHHHHHHHHHhhh------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc
Confidence 9999998888888877654321 11134689999999999999999999 66799999999999998643221
Q ss_pred --CCcceEEEecCHHHHHHHHHHHHHHh
Q psy13906 568 --STEREVNIKGVPDAVTQAIYQICLIM 593 (914)
Q Consensus 568 --~~er~V~I~G~~e~V~~A~~~I~~~l 593 (914)
.....|+|+|+.++|.+|+.+|+++|
T Consensus 232 ~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 232 TRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp --CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred ccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 24568999999999999999999987
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.88 E-value=2.2e-22 Score=203.72 Aligned_cols=169 Identities=27% Similarity=0.455 Sum_probs=132.9
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccC--CCCCCCcceEEEecCHHHHHHHHHHHHHHhccCCCCC
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD--MLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKG 600 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~--~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~ 600 (914)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.++ ..|.+.+|.|+|+|++++|.+|+.+|.+++.+.+...
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 83 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 83 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCcc
Confidence 36889999999999999999999999999999999999864 3567889999999999999999999999998763211
Q ss_pred CCCCCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhhhcccccCCCCCC
Q psy13906 601 ATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRN 680 (914)
Q Consensus 601 ~~~py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~ 680 (914)
... .+... . .+. .+
T Consensus 84 ~~~---------------------------------~~~~~---~--------------~~~------------~~---- 97 (178)
T 2anr_A 84 AKT---------------------------------EPVSI---L--------------QPQ------------TT---- 97 (178)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC---------------------------------Ccccc---c--------------CCc------------cC----
Confidence 000 00000 0 000 00
Q ss_pred CccccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEE
Q psy13906 681 QNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMT 760 (914)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~ 760 (914)
.......+.+|.||.+++|+||||+|++|++|++.|||+|.|++..+ .+...++.|+|+
T Consensus 98 --------------------~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~-~~~~~~~~v~I~ 156 (178)
T 2anr_A 98 --------------------VNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD-GINLQNRVVTVS 156 (178)
T ss_dssp ----------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----CCEEEEEEE
T ss_pred --------------------CCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC-CCCCCceEEEEE
Confidence 00023567899999999999999999999999999999999997532 224567999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q psy13906 761 GTPDAIALAQYLINMSVE 778 (914)
Q Consensus 761 G~~~~v~~A~~li~~~i~ 778 (914)
|++++|+.|+.+|.++|+
T Consensus 157 G~~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQ 174 (178)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999999985
No 9
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.87 E-value=3.6e-22 Score=219.49 Aligned_cols=223 Identities=14% Similarity=0.130 Sum_probs=163.8
Q ss_pred ccccccceeecccCcceEeEEEeCCc--hhHHHHHHHhCCeEEeeCCC-------CCeeEEEEEcChhHHHHHHHHHHHH
Q psy13906 434 QTTGVQRRMRHIMQGKEVGSIIGKSG--ETVKKLREESGSKIYISDSS-------TPERIVTVIGSMDSLFRAFSLITKN 504 (914)
Q Consensus 434 ~~~~~~~~~ri~vp~~~vg~IIGk~G--~~Ik~I~~etga~I~i~~~~-------~~ervv~I~G~~e~V~~A~~~I~~~ 504 (914)
+.+...+++.+.||...++.||||+| ++|++|+++|+|+|+|++.+ .....|+|+|.+++|++|+.+|.+.
T Consensus 24 e~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 24 EINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp CCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred EecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 45567899999999999999999999 99999999999999998765 3456899999999999999998874
Q ss_pred HHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCC-CCCcceEEEecCHHHHH
Q psy13906 505 IEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLP-NSTEREVNIKGVPDAVT 583 (914)
Q Consensus 505 i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p-~~~er~V~I~G~~e~V~ 583 (914)
+ ..++.+.+|...+.. ...+..|.+ ++.++++|.|+..... ......|+|+|...++.
T Consensus 104 ~------------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~ 162 (376)
T 3n89_A 104 C------------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQH 162 (376)
T ss_dssp C------------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHH
T ss_pred C------------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHH
Confidence 2 456677777543322 111234544 6788999998764211 12357899999997776
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHH
Q psy13906 584 QAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAA 663 (914)
Q Consensus 584 ~A~~~I~~~l~e~~~~~~~~py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~ 663 (914)
+|++.+..++..-....
T Consensus 163 ~akeA~~~Ll~~l~~~e--------------------------------------------------------------- 179 (376)
T 3n89_A 163 ELIEAAKRLNEILFRES--------------------------------------------------------------- 179 (376)
T ss_dssp HHHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhh---------------------------------------------------------------
Confidence 66555444443210000
Q ss_pred HHHhhhcccccCCCCCCCccccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcc--hHHHHHhhhCCEEE
Q psy13906 664 LAALASSQLKTNHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGT--KIFEIRKISGAMIR 741 (914)
Q Consensus 664 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~--~I~~I~~~sga~I~ 741 (914)
......++.+|.|+..+|..||||+|+ .|++|++.|||+|.
T Consensus 180 -------------------------------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~ 222 (376)
T 3n89_A 180 -------------------------------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIIS 222 (376)
T ss_dssp -------------------------------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEE
T ss_pred -------------------------------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEE
Confidence 000245788999999999999999994 56999999999999
Q ss_pred EcCCCCCCC-CCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 742 ISKSSEEEE-DSNDRTITMTGTPDAIALAQYLINMSV 777 (914)
Q Consensus 742 i~~~~~~~~-~~~~r~i~I~G~~~~v~~A~~li~~~i 777 (914)
+|+..+..+ ......|+|+|+.++|..|+..|+++|
T Consensus 223 FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 223 YPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp CC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred CCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 997643221 123578999999999999999999987
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=199.84 Aligned_cols=149 Identities=52% Similarity=0.901 Sum_probs=130.2
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcce
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI 80 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~ 80 (914)
||.+++|.||||+|++|++|+++|||+|+|++.++++|+|+|+|+.++|.+|+.+|.+.+.+....... ..........
T Consensus 11 vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~~-~~~~~~~~~~ 89 (160)
T 2jzx_A 11 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMT-NSTAASRPPV 89 (160)
T ss_dssp EEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCC-SSSCCCCCSE
T ss_pred EchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhhccccCC-CCccCCCCCE
Confidence 477899999999999999999999999999988888999999999999999999999998775332100 0001122357
Q ss_pred EEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 81 QLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 150 (914)
Q Consensus 81 ~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 150 (914)
+++|.||.+++|+|||++|.+|++|+++|||+|.+.++..|.+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 90 ~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 90 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998777888999999999999999999999998865
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=201.81 Aligned_cols=155 Identities=23% Similarity=0.361 Sum_probs=130.0
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC----CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhccccc
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKH 515 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~----~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~ 515 (914)
.+++|+||.+.+|.|||++|++||+|+++|||+|+|.+. +..+|+|+|+|++++|.+|+.+|.+++.+........
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~~ 81 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGD 81 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 467899999999999999999999999999999999754 3568999999999999999999999987653211000
Q ss_pred CCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 516 LGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 516 ~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e 595 (914)
....+.....+++|.||..++|+||||+|++||+|+++|||+|++.++. +.+.++.|+|+|++++|+.|+.+|.+++.+
T Consensus 82 ~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 82 RNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-GTGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp CSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC-TTSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC-CCCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 0011111235678999999999999999999999999999999998753 456689999999999999999999999865
No 12
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.86 E-value=3.8e-22 Score=201.17 Aligned_cols=154 Identities=29% Similarity=0.461 Sum_probs=127.9
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCC--CCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCC
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLG 517 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~--~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~ 517 (914)
.+++|+||.+.+|.||||+|++||+|+++|||+|+|.+. ++.+|+|+|+|+.++|.+|+.+|.+++++.........+
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~ 82 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPG 82 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCC
Confidence 477999999999999999999999999999999999853 577899999999999999999999999876421100000
Q ss_pred --------------CCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCC--CCCcceEEEecCHHH
Q psy13906 518 --------------GNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLP--NSTEREVNIKGVPDA 581 (914)
Q Consensus 518 --------------~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p--~~~er~V~I~G~~e~ 581 (914)
........+++|.||.+++|+||||+|++||+|+++|||+|+|.++..+ ++.++.|+|.|++++
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~ 162 (174)
T 1j4w_A 83 PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ 162 (174)
T ss_dssp ---------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHH
T ss_pred CCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHH
Confidence 0001124688999999999999999999999999999999999886433 467899999999999
Q ss_pred HHHHHHHHHHHh
Q psy13906 582 VTQAIYQICLIM 593 (914)
Q Consensus 582 V~~A~~~I~~~l 593 (914)
|.+|+.+|.++|
T Consensus 163 v~~A~~~I~~~i 174 (174)
T 1j4w_A 163 IDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.69 E-value=2.8e-17 Score=159.61 Aligned_cols=137 Identities=28% Similarity=0.370 Sum_probs=106.1
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccCCCCCCCC
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~~~~ 603 (914)
.++.+|.||...+|.+||++|++|+.|++++|++|....+ ..++.+...++|+.|.+|..+ + +.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~----~~~~~i~~~~~p~~v~~~~~~----l-~~------- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE----DTCTFHIYGEDQDAVKKARSF----L-EF------- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET----TTTEEEEEESSHHHHHHHHHH----H-CE-------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC----CchheeeccCCHHHHHHHHHh----h-hc-------
Confidence 4678999999999999999999999999999944433221 233445555579999887542 2 10
Q ss_pred CCCCCCCCCCCCcccCCcccccCcCCCCCCCCCCccchhcccCCCCCCCCCCCCCCChHHHHHhhhcccccCCCCCCCcc
Q psy13906 604 PYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQ 683 (914)
Q Consensus 604 py~P~~~~~~~~~~~g~~~~~q~s~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~s~~~~~~~~~~~~~ 683 (914)
T Consensus 67 -------------------------------------------------------------------------------- 66 (144)
T 2qnd_A 67 -------------------------------------------------------------------------------- 66 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCccccccCCceEEEEEecCccccccccCCcchHHHHHhhhCC-EEEEcCCCCCCCCCCc--eEEEEE
Q psy13906 684 NQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRISKSSEEEEDSND--RTITMT 760 (914)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga-~I~i~~~~~~~~~~~~--r~i~I~ 760 (914)
. ..++.||.+.+|++|||+|+||+.|++.||| +|+|+...+......+ ..|+|+
T Consensus 67 --------------------~---e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~ 123 (144)
T 2qnd_A 67 --------------------A---EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFV 123 (144)
T ss_dssp --------------------E---EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEE
T ss_pred --------------------c---eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEE
Confidence 0 1479999999999999999999999999997 9999875442211223 358999
Q ss_pred cCHHHHHHHHHHHHHHHHH
Q psy13906 761 GTPDAIALAQYLINMSVEL 779 (914)
Q Consensus 761 G~~~~v~~A~~li~~~i~~ 779 (914)
|++++|+.|+.||+++|..
T Consensus 124 G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 124 GTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEHHHHHHHHHHHHHHHHT
T ss_pred eCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999854
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.64 E-value=1.6e-16 Score=154.26 Aligned_cols=133 Identities=20% Similarity=0.284 Sum_probs=108.0
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeC-CCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCC
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD-SSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGG 518 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~-~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~ 518 (914)
++.+++||.+.+|.+||++|++|++|++++| |++.. ...+++++...++++.|.+|+.++.
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~~~~~i~~~~~p~~v~~~~~~l~---------------- 65 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDEDTCTFHIYGEDQDAVKKARSFLE---------------- 65 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETTTTEEEEEESSHHHHHHHHHHHC----------------
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCCchheeeccCCHHHHHHHHHhhh----------------
Confidence 5678999999999999999999999999999 44432 2345566666677999988865321
Q ss_pred CCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCc-eEEEccCCCC--CCCcc--eEEEecCHHHHHHHHHHHHHHh
Q psy13906 519 NGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGA-SVYVASDMLP--NSTER--EVNIKGVPDAVTQAIYQICLIM 593 (914)
Q Consensus 519 ~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga-~I~v~~~~~p--~~~er--~V~I~G~~e~V~~A~~~I~~~l 593 (914)
..+.++.||.+++|++|||+|.+||.|++.||+ +|+|.++... ..+++ .|+|.|++++|+.|+.+|..+|
T Consensus 66 -----~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 66 -----FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp -----EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -----cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 123789999999999999999999999999997 9999874322 12333 5899999999999999999998
Q ss_pred cc
Q psy13906 594 VD 595 (914)
Q Consensus 594 ~e 595 (914)
.+
T Consensus 141 ~~ 142 (144)
T 2qnd_A 141 NY 142 (144)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.51 E-value=1.7e-14 Score=148.84 Aligned_cols=143 Identities=23% Similarity=0.250 Sum_probs=111.5
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcC-----hhHHHHHHHHHHHHHHHhhhcccc
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGS-----MDSLFRAFSLITKNIEEFHKNQNK 514 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~-----~e~V~~A~~~I~~~i~~~~~~~~~ 514 (914)
.+.++.||.+.+|.|||++|++|+.|+++|||+|+|... ++.|.|+++ ++++++|+.+|..++..+......
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~---~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~ 110 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE---TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAF 110 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT---TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHG
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC---CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccc
Confidence 466899999999999999999999999999999999733 456888876 699999999999988321110000
Q ss_pred cCCCCCCCcceEEEEEec-----------CCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHH
Q psy13906 515 HLGGNGESQLIQLRLIVP-----------ASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVT 583 (914)
Q Consensus 515 ~~~~~~~~~~~~~~l~VP-----------~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~ 583 (914)
... .+......+.|+ ...+|+||||+|.+|+.|++.|||+|.|.. +.|.|.|++++++
T Consensus 111 ~ll---~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~--------~~v~i~G~~~~i~ 179 (219)
T 2e3u_A 111 RLL---NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG--------KTVAIIGNPIQIE 179 (219)
T ss_dssp GGG---STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET--------TEEEEEECHHHHH
T ss_pred eec---cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC--------eEEEEEeCHHHHH
Confidence 000 001111223333 236899999999999999999999999964 5799999999999
Q ss_pred HHHHHHHHHhccC
Q psy13906 584 QAIYQICLIMVDS 596 (914)
Q Consensus 584 ~A~~~I~~~l~e~ 596 (914)
.|+..|++++.+.
T Consensus 180 ~A~~~i~~li~g~ 192 (219)
T 2e3u_A 180 IAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999775
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.51 E-value=2.7e-14 Score=147.24 Aligned_cols=137 Identities=24% Similarity=0.269 Sum_probs=107.2
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcC-----hhHHHHHHHHHHHHHHHhhhhccccCCCCC
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGS-----MDSLFRAFSLITKNIEEFHKNQNKHLGGNG 75 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~-----~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~ 75 (914)
||.++++.|||++|++|+.|+++|||+|.|.. .++.|.|.+. ++++++|+.+|.+++............
T Consensus 40 IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~---~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll--- 113 (219)
T 2e3u_A 40 IPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS---ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLL--- 113 (219)
T ss_dssp CCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT---TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGG---
T ss_pred eCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc---CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceec---
Confidence 68899999999999999999999999999974 3567888887 599999999999988322111110000
Q ss_pred CCcceEEEEEeec-----------cccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHH
Q psy13906 76 ESQLIQLRLIVPA-----------SQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144 (914)
Q Consensus 76 ~~~~~~~~l~Vp~-----------~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I 144 (914)
.++.....+.++. ..+|+|||++|.+|+.|++.|||+|.|. ++.|.|.|+.++|+.|...|
T Consensus 114 ~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~--------~~~v~i~G~~~~i~~A~~~i 185 (219)
T 2e3u_A 114 NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY--------GKTVAIIGNPIQIEIAKTAI 185 (219)
T ss_dssp STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE--------TTEEEEEECHHHHHHHHHHH
T ss_pred cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC--------CeEEEEEeCHHHHHHHHHHH
Confidence 0112222343332 2689999999999999999999999995 46899999999999999999
Q ss_pred HHHhccC
Q psy13906 145 CLIMVDS 151 (914)
Q Consensus 145 ~~~l~~~ 151 (914)
.+++...
T Consensus 186 ~~li~g~ 192 (219)
T 2e3u_A 186 EKLARGS 192 (219)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9999654
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.45 E-value=9.9e-14 Score=119.59 Aligned_cols=73 Identities=42% Similarity=0.699 Sum_probs=66.3
Q ss_pred ceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 706 QITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 778 (914)
Q Consensus 706 ~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~ 778 (914)
..+.++.||.+++|+|||++|++|++|++.|||+|.|++..++.+++.++.|+|+|++++++.|+.+|++.+.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 3577999999999999999999999999999999999986555567788999999999999999999999874
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.44 E-value=3.3e-13 Score=117.94 Aligned_cols=74 Identities=49% Similarity=0.721 Sum_probs=66.9
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELL 780 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~ 780 (914)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|++. .+++.+|.|+|+|++++++.|+.||++++++.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999999853 23567899999999999999999999999754
No 19
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=2.4e-13 Score=120.26 Aligned_cols=76 Identities=39% Similarity=0.654 Sum_probs=68.5
Q ss_pred eEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHh
Q psy13906 707 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRA 782 (914)
Q Consensus 707 ~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~ 782 (914)
.+.+|.||.+++|+|||++|++|++|++.|||+|.|++..+..+++.++.|+|+|++++++.|+.||++.|.....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 5779999999999999999999999999999999999865555577889999999999999999999999976543
No 20
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.41 E-value=4.1e-13 Score=120.01 Aligned_cols=74 Identities=34% Similarity=0.584 Sum_probs=67.0
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELL 780 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~ 780 (914)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|++.. ++..+|.|+|+|+++++++|+.||+++|+..
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3568899999999999999999999999999999999999653 2567899999999999999999999999654
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=3.3e-13 Score=118.04 Aligned_cols=74 Identities=47% Similarity=0.760 Sum_probs=65.8
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELL 780 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~ 780 (914)
...++.+|.||.+++|+||||+|++|++|++.|||+|+|++.. +++.++.|+|+|++++++.|+.||++.+...
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV---EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC---TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCC---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4577899999999999999999999999999999999999642 3667899999999999999999999998543
No 22
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.39 E-value=3.7e-13 Score=115.91 Aligned_cols=71 Identities=49% Similarity=0.847 Sum_probs=65.0
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 778 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~ 778 (914)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|++. .+++.++.|+|+|++++++.|+.||++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999963 346678999999999999999999999884
No 23
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=9.5e-13 Score=120.95 Aligned_cols=71 Identities=30% Similarity=0.535 Sum_probs=64.5
Q ss_pred EEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 708 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 778 (914)
Q Consensus 708 ~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~ 778 (914)
+.+|.||.+++|+||||+|++|++|+++|||+|+|++..++..+..++.|+|+|++++|++|+.||+++|+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999976544445678999999999999999999999873
No 24
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.37 E-value=7e-13 Score=117.75 Aligned_cols=74 Identities=49% Similarity=0.721 Sum_probs=66.9
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELL 780 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~ 780 (914)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|++. .+++.+|.|+|+|+++++++|+.||++++++.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999854 23567899999999999999999999998653
No 25
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.37 E-value=6.2e-13 Score=133.68 Aligned_cols=142 Identities=23% Similarity=0.285 Sum_probs=114.0
Q ss_pred eeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEE-----cChhHHHHHHHHHHHHHHHhhhccccc
Q psy13906 441 RMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI-----GSMDSLFRAFSLITKNIEEFHKNQNKH 515 (914)
Q Consensus 441 ~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~-----G~~e~V~~A~~~I~~~i~~~~~~~~~~ 515 (914)
.++++||.+.+|.|||++|++++.|+++++++|++... ++.|.|+ |++.++.+|...|..+...+.......
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~---~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~ 81 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE---NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFR 81 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT---TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGG
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC---CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhh
Confidence 46899999999999999999999999999999999743 5677888 999999999999998887543221110
Q ss_pred CCCCCCCcceEEEEEec----------CCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHH
Q psy13906 516 LGGNGESQLIQLRLIVP----------ASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585 (914)
Q Consensus 516 ~~~~~~~~~~~~~l~VP----------~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A 585 (914)
.. .+......+.++ ....|+|||++|.+|+.|+..|||+|.|.. +.|.|.|++++++.|
T Consensus 82 Ll---~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~--------~~v~i~G~~~~i~~A 150 (191)
T 1tua_A 82 LL---EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE--------YEVAIIGDYERAMAA 150 (191)
T ss_dssp GG---STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS--------SEEEEEEEHHHHHHH
T ss_pred cc---cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC--------CEEEEEeChHHHHHH
Confidence 00 011222233344 236899999999999999999999999964 489999999999999
Q ss_pred HHHHHHHhccC
Q psy13906 586 IYQICLIMVDS 596 (914)
Q Consensus 586 ~~~I~~~l~e~ 596 (914)
+..|+++|...
T Consensus 151 r~~i~~li~g~ 161 (191)
T 1tua_A 151 KQAIEMLAEGR 161 (191)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999754
No 26
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.34 E-value=1.8e-12 Score=130.36 Aligned_cols=137 Identities=23% Similarity=0.300 Sum_probs=110.8
Q ss_pred CCCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEE-----cChhHHHHHHHHHHHHHHHhhhhccccCCCCC
Q psy13906 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI-----GSMDSLFRAFSLITKNIEEFHKNQNKHLGGNG 75 (914)
Q Consensus 1 i~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~-----G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~ 75 (914)
||..++|.|||++|++++.|+++++|+|.+.. .++.|+|. |++..+.+|..+|.++............ .
T Consensus 10 VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~---~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~L---l 83 (191)
T 1tua_A 10 VKPERLGAVIGPRGEVKAEIMRRTGTVITVDT---ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRL---L 83 (191)
T ss_dssp CCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET---TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGG---G
T ss_pred CCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc---CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhc---c
Confidence 68999999999999999999999999999976 57788888 8899999999999998875432211100 0
Q ss_pred CCcceEEEEEeec----------cccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHH
Q psy13906 76 ESQLIQLRLIVPA----------SQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQIC 145 (914)
Q Consensus 76 ~~~~~~~~l~Vp~----------~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~ 145 (914)
.++.+...+.++. ...|+|||++|.+|+.|+..|||+|.|. ++.|.|.|..++++.|...|.
T Consensus 84 ~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~--------~~~v~i~G~~~~i~~Ar~~i~ 155 (191)
T 1tua_A 84 EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG--------EYEVAIIGDYERAMAAKQAIE 155 (191)
T ss_dssp STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC--------SSEEEEEEEHHHHHHHHHHHH
T ss_pred cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc--------CCEEEEEeChHHHHHHHHHHH
Confidence 1112333444542 3579999999999999999999999995 358999999999999999999
Q ss_pred HHhccC
Q psy13906 146 LIMVDS 151 (914)
Q Consensus 146 ~~l~~~ 151 (914)
+++...
T Consensus 156 ~li~g~ 161 (191)
T 1tua_A 156 MLAEGR 161 (191)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 999653
No 27
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.34 E-value=1.4e-12 Score=111.34 Aligned_cols=69 Identities=32% Similarity=0.469 Sum_probs=63.6
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 778 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~ 778 (914)
..++.++.||.+++|+||||+|++|++|++.|||+|+|++. +..+|.|+|+|++++++.|+.+|.+.|+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999964 3568999999999999999999999885
No 28
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=113.11 Aligned_cols=68 Identities=24% Similarity=0.401 Sum_probs=61.8
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSV 777 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i 777 (914)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|++.. .++.|+|+|+++++++|+++|++.+
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHI 74 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999642 3588999999999999999999976
No 29
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=8.9e-12 Score=111.71 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=68.1
Q ss_pred cCCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHh
Q psy13906 703 QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRA 782 (914)
Q Consensus 703 ~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~ 782 (914)
....++.+|.||.+++|+|||++|++|++|+++|||+|+|++.. ...++.|+|+|++++++.|+.+|+.++++...
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG----APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT----CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC----CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999998643 23468999999999999999999999987665
Q ss_pred c
Q psy13906 783 N 783 (914)
Q Consensus 783 ~ 783 (914)
.
T Consensus 89 ~ 89 (95)
T 2ctm_A 89 D 89 (95)
T ss_dssp S
T ss_pred H
Confidence 3
No 30
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=116.35 Aligned_cols=71 Identities=27% Similarity=0.462 Sum_probs=64.0
Q ss_pred EEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 708 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 781 (914)
Q Consensus 708 ~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~ 781 (914)
+.+|.||.+++++||||+|++|++|+++|||+|+|+++. +.+.+|.|+|+|+++++++|+.||+++++...
T Consensus 12 ~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 12 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 679999999999999999999999999999999998643 24568999999999999999999999986544
No 31
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=3.7e-12 Score=117.01 Aligned_cols=81 Identities=26% Similarity=0.502 Sum_probs=68.9
Q ss_pred eEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCC--CCCcceEEEecCHHHHHHHHHHHHHHhccCCCCCCC
Q psy13906 525 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLP--NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 602 (914)
Q Consensus 525 ~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p--~~~er~V~I~G~~e~V~~A~~~I~~~l~e~~~~~~~ 602 (914)
.+++|.||.+++|+||||+|++||+|+++|||+|+|.++..+ +.+++.|+|+|++++|++|+.+|.+++.+. .
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~-----~ 81 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP-----L 81 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC-----C
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc-----c
Confidence 378999999999999999999999999999999999986543 356899999999999999999999999886 3
Q ss_pred CCCCCCCC
Q psy13906 603 IPYRPLPQ 610 (914)
Q Consensus 603 ~py~P~~~ 610 (914)
.||.|.+.
T Consensus 82 ~~~~p~~~ 89 (107)
T 2hh2_A 82 CPVGPGPG 89 (107)
T ss_dssp CEEC----
T ss_pred ccCCCCCC
Confidence 57777654
No 32
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.29 E-value=1.4e-12 Score=111.23 Aligned_cols=70 Identities=54% Similarity=0.932 Sum_probs=66.4
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHH
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 507 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~ 507 (914)
..++++|+||.+.+|.|||++|++|++|+++|||+|+|++.++++|+|+|+|+++++.+|+.+|.+++++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999998888899999999999999999999999875
No 33
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.28 E-value=1.1e-11 Score=113.29 Aligned_cols=77 Identities=34% Similarity=0.447 Sum_probs=66.5
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 781 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~ 781 (914)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|++..+.. .+.++.|+|+|+.++++.|+.||++.+....
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-LLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 3457889999999999999999999999999999999999754311 2357999999999999999999999996443
No 34
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=1.3e-11 Score=111.12 Aligned_cols=78 Identities=22% Similarity=0.225 Sum_probs=68.6
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhc
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRAN 783 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~ 783 (914)
....+..|.||.+++++|||++|++|++|+++|||+|.|++..+ +...++.|+|+|+.++++.|+.+|+..+......
T Consensus 14 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~~ 91 (97)
T 2ctl_A 14 LRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVGELEQM 91 (97)
T ss_dssp HTTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999999997543 2336789999999999999999999999876653
No 35
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=109.09 Aligned_cols=73 Identities=22% Similarity=0.418 Sum_probs=64.5
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 778 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~ 778 (914)
...+.+|.||.+++|+||||+|++|++|+++|||+|.|++... .+.+.+|.|+|+|++++++.|+.+|++.+.
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999999997532 234578999999999999999999998873
No 36
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=1e-11 Score=111.35 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=66.9
Q ss_pred CCceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhc
Q psy13906 704 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRAN 783 (914)
Q Consensus 704 ~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~ 783 (914)
...++.+|.||.+++|.|||++|.+|++|+++|||+|.|++.. +.++.|+|+|+++++++|+.+|++.++.....
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~~ 88 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQDKR 88 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhccccc
Confidence 4678999999999999999999999999999999999999542 23578999999999999999999999876654
No 37
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.26 E-value=6.3e-12 Score=112.72 Aligned_cols=72 Identities=22% Similarity=0.459 Sum_probs=64.7
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSV 777 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i 777 (914)
..++.+|.||.+++|+||||+|++|++|+++|||+|.|++..++. ...+|.|+|+|++++++.|+.||++++
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~r~v~I~G~~~~v~~A~~~I~~~i 84 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELI 84 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-SCSCEEEEEEECTTTHHHHHHHHHHHH
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-CCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999754322 336899999999999999999999998
No 38
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.25 E-value=4.8e-12 Score=108.92 Aligned_cols=72 Identities=33% Similarity=0.555 Sum_probs=67.0
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e 595 (914)
..++.+|.||.+++|+|||++|++|++|+++|||+|++.+. .+.+.++.|+|.|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 36788999999999999999999999999999999999874 5778899999999999999999999999875
No 39
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.25 E-value=8.6e-12 Score=108.96 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=67.3
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
..++.+|.||.+++|+||||+|++||+|+++|||+|++.++ .+.+++|.|+|+|++++|++|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 36889999999999999999999999999999999999864 46778899999999999999999999999774
No 40
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=6.6e-12 Score=109.69 Aligned_cols=73 Identities=30% Similarity=0.499 Sum_probs=66.4
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
..++.+|.||.+++|.||||+|++||+|+++|||+|++.++ .+.+.++.|+|+|++++|++|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999874 46778999999999999999999999999876
No 41
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.23 E-value=1e-11 Score=105.17 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=61.3
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSV 777 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i 777 (914)
...+.++.||.+++|.|||++|++|++|+++|||+|.|++.. ..++.|+|+|+.++++.|+.+|+..+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999642 35689999999999999999998753
No 42
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.23 E-value=1.4e-11 Score=105.96 Aligned_cols=72 Identities=43% Similarity=0.702 Sum_probs=64.9
Q ss_pred eEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 262 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 333 (914)
Q Consensus 262 ~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve 333 (914)
.+.++.||.+++++|||++|++|++|+++|||+|+|.+..+..+++.++.|+|.|++++|++|+.+|.++++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999976444455678999999999999999999998764
No 43
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=106.58 Aligned_cols=73 Identities=27% Similarity=0.455 Sum_probs=66.4
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCC-CCCCcceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDML-PNSTEREVNIKGVPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~-p~~~er~V~I~G~~e~V~~A~~~I~~~l~e 595 (914)
.....+|.||.+.+|+||||+|++||+|+++|||+|.+.++.. +.+.+|.|+|.|+++++++|+.+|.+++.|
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 4577899999999999999999999999999999999998653 457789999999999999999999999864
No 44
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.21 E-value=8.9e-12 Score=110.60 Aligned_cols=74 Identities=35% Similarity=0.572 Sum_probs=68.2
Q ss_pred CcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 522 SQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 522 ~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
...++.+|.||.+++|.||||+|++||+|+++|||+|++.+. .+.++++.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC-CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC-CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999999864 46778999999999999999999999999874
No 45
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=3.3e-11 Score=106.48 Aligned_cols=75 Identities=40% Similarity=0.660 Sum_probs=67.2
Q ss_pred eEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 262 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 336 (914)
Q Consensus 262 ~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~ 336 (914)
.+.++.||.+++|+|||++|++|++|+++|||+|+|.+..+..+++.++.|+|.|++++|+.|+.+|.+++++..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999999999999999975443455678999999999999999999999987654
No 46
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.19 E-value=2.2e-11 Score=108.71 Aligned_cols=74 Identities=30% Similarity=0.475 Sum_probs=68.0
Q ss_pred CcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 522 SQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 522 ~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.++. +...++.|+|.|++++|++|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999999999999999999999999998754 4567899999999999999999999999885
No 47
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.15 E-value=3.3e-11 Score=108.06 Aligned_cols=75 Identities=28% Similarity=0.462 Sum_probs=68.1
Q ss_pred CcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCC-CCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 522 SQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 522 ~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p-~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.++..+ ..++|.|+|.|++++|++|+.+|.+++.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999999999999999999999986432 457899999999999999999999999875
No 48
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=5.5e-11 Score=108.40 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=65.1
Q ss_pred ceEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhc
Q psy13906 706 QITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRAN 783 (914)
Q Consensus 706 ~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~ 783 (914)
..+.+|.||.+++|+|||++|++|++|+++|||+|+|++.. ...+.|+|+|+.++++.|+.+|+..++.....
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-----~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e~~ 88 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-----LQSDIIAITGLAANLDRAKAGLLERVKELQAE 88 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-----TTCCEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhhHHHh
Confidence 47889999999999999999999999999999999999643 24569999999999999999999999866543
No 49
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=4.7e-11 Score=109.14 Aligned_cols=72 Identities=25% Similarity=0.361 Sum_probs=65.0
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
..+++|.||.+++|+||||+|++||+|+++|+|+|+|.++. +...+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999998753 4567899999999999999999999999875
No 50
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=7.1e-11 Score=102.88 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=61.4
Q ss_pred cceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q psy13906 260 NQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVE 333 (914)
Q Consensus 260 ~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve 333 (914)
.+++.+|.||.+++++|||++|++|++|+++|||+|+|++.+ +++.|+|+|++++|++|+.+|.+++.
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999998632 35899999999999999999998764
No 51
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=2.2e-10 Score=102.42 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=66.8
Q ss_pred cCCceEEEEEecCccccccccCCcchHHHHHhhh-CCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 703 QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKIS-GAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 781 (914)
Q Consensus 703 ~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~s-ga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~ 781 (914)
..+.++.+|.||.++++.|||++|.+|++|+++| ||+|+|++. ++..+.|+|+|+.+++++|+.+|++.++..+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-----GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-----TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 3678899999999999999999999999999999 999999954 3456789999999999999999999997655
No 52
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=1.1e-10 Score=104.99 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=66.1
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 595 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e 595 (914)
..++.|.||..++|.|||++|++|++|+++|||+|+|+++..+...++.|+|+|+.+++.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999988655555789999999999999999999998865
No 53
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=3.6e-10 Score=101.23 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=66.7
Q ss_pred cccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 258 QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 336 (914)
Q Consensus 258 ~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~ 336 (914)
....++.++.||.+++++|||++|++|++|+++|||+|+|+++. ...++.|+|+|++++|++|+.+|++++++..
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG----APDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT----CSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC----CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999998542 2346899999999999999999999998766
No 54
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=6.3e-12 Score=114.10 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=75.6
Q ss_pred EEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhc-CceEEEccCCC
Q psy13906 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETS-GASVYVASDML 565 (914)
Q Consensus 487 I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~t-ga~I~v~~~~~ 565 (914)
|+|++++|.+|+.+|.+++. ..++.+|.||..+|++|||++|++||+|++++ +++|+|++
T Consensus 5 i~G~~~~V~~A~~~i~~~~~----------------~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--- 65 (102)
T 2ctf_A 5 SSGEPEKLGQALTEVYAKAN----------------SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--- 65 (102)
T ss_dssp CCCCCCCCCCSCCCCCCCCC----------------CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS---
T ss_pred cCcCHHHHHHHHHHHHHHhc----------------CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC---
Confidence 67888888888877765442 24788999999999999999999999999974 89999876
Q ss_pred CCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 566 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 566 p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
.++.|+|+|+++.|++|+.+|.+++.+.
T Consensus 66 ---~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 ---GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp ---SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999998764
No 55
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=2.4e-10 Score=102.31 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=65.6
Q ss_pred ccceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 259 QNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 336 (914)
Q Consensus 259 ~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~ 336 (914)
..+++..+.||.+++++|||++|.+|++|+++|||+|+|++.. ..++.|+|.|++++|++|+.+|+++++...
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 4568999999999999999999999999999999999998642 235799999999999999999999998765
No 56
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.06 E-value=2.1e-10 Score=97.10 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=60.2
Q ss_pred ceEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q psy13906 261 QITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSV 332 (914)
Q Consensus 261 ~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~v 332 (914)
..+.++.||.++++.|||++|++|++|+++|||+|+|+++. ..++.|+|.|+.+++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999998642 25689999999999999999998753
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=6.3e-10 Score=100.89 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=65.1
Q ss_pred CceEEEEEecCccccccccCCcchHHHHHhh-hCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhc
Q psy13906 705 NQITKEMTVPNELIGAVIGKGGTKIFEIRKI-SGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRAN 783 (914)
Q Consensus 705 ~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~-sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~ 783 (914)
..++.+|.||.++|++|||++|++|++|++. ++++|.||+ .++.|+|+|++++|++|+.+|+.+++.+...
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--------~~~~ItI~G~~~~V~~a~~~I~~~v~el~~~ 96 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------GEDKITLEGPTEDVSVAQEQIEGMVKDLINR 96 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--------SSCEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--------CCCEEEEECCHHHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999999999999999996 599999995 2368999999999999999999999888765
Q ss_pred cc
Q psy13906 784 LN 785 (914)
Q Consensus 784 ~~ 785 (914)
..
T Consensus 97 ~~ 98 (102)
T 2ctf_A 97 SG 98 (102)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 58
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.02 E-value=5.9e-10 Score=101.80 Aligned_cols=74 Identities=35% Similarity=0.460 Sum_probs=64.4
Q ss_pred eEEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 262 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 336 (914)
Q Consensus 262 ~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~ 336 (914)
.+.+|.||.+++++|||++|++|++|+++|||+|+|.+..+. ....++.|+|.|+.++|++|+.+|.+++++..
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG-TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC-CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 578999999999999999999999999999999999865321 12358999999999999999999999986543
No 59
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.94 E-value=5.6e-10 Score=101.71 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=66.6
Q ss_pred ccceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhh
Q psy13906 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHK 510 (914)
Q Consensus 438 ~~~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~ 510 (914)
...+..|.||.+.++.|||++|++||+|+++|||+|+|++.+...+.|+|+|+.++|++|+.+|..++++...
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhHHH
Confidence 3467889999999999999999999999999999999998776677999999999999999999999987653
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.91 E-value=2.9e-09 Score=95.21 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=66.2
Q ss_pred cccceEEEEEecccccccccccCcchHHHHHhhh-CCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 258 QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKIS-GAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 336 (914)
Q Consensus 258 ~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~t-ga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~ 336 (914)
..+.++..|.||.++|+.|||++|.+|++|+++| ||+|+|+++ +...+.|+|.|+.++|++|+.+|+.+++..+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-----GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-----TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 4567799999999999999999999999999999 999999853 3356799999999999999999999998654
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.76 E-value=7.5e-09 Score=90.81 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=58.7
Q ss_pred cCCceEEEEEecCccccccccCCcchHHHHHhhhCCE-EEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHH
Q psy13906 703 QQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAM-IRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINMS 776 (914)
Q Consensus 703 ~~~~~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~-I~i~~~~~~~~~~~~r~i~I~G-~~~~v~~A~~li~~~ 776 (914)
....+..+|.||.+++|.|||++|.+|++|+++|||+ |.|.. ++.+|+|.| +.+++++|+.+|+..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999999998 99972 247899999 899999999998543
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.48 E-value=1.3e-07 Score=82.99 Aligned_cols=66 Identities=27% Similarity=0.510 Sum_probs=58.5
Q ss_pred ccccceEEEEEecccccccccccCcchHHHHHhhhCCE-EEEcCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHH
Q psy13906 257 QQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAM-IRISKSSEEEEDSNDRTITMTG-TPDAIALAQYLINM 330 (914)
Q Consensus 257 ~~~~~~~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~-I~i~~~~~~~~~~~~~~i~I~G-~~e~v~~A~~~I~~ 330 (914)
+....+...|.||+++++.+||++|++|++|+++||++ |.|.+ ++.+|+|.| +.+++++|+.+|+.
T Consensus 10 ~~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 10 QLAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SSSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHSC
T ss_pred hccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEECCHHHHHHHHHHHHh
Confidence 34556789999999999999999999999999999998 99963 348999999 88999999999864
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.4e-06 Score=80.76 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCceEEEEEecCc-------cccccccCCcchHHHHHhhhCCEEEEcCCC----C---CCCCCCceEEEEEc-CHHHHHH
Q psy13906 704 QNQITKEMTVPNE-------LIGAVIGKGGTKIFEIRKISGAMIRISKSS----E---EEEDSNDRTITMTG-TPDAIAL 768 (914)
Q Consensus 704 ~~~~~~~~~vp~~-------~~g~iIG~~G~~I~~I~~~sga~I~i~~~~----~---~~~~~~~r~i~I~G-~~~~v~~ 768 (914)
....+.+|.||.+ ++|.|||++|.+|++|+++|||+|.|..+. + ......+-.|.|++ +.+++++
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~ 88 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAA 88 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHH
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHH
Confidence 3456778888765 789999999999999999999999996321 0 00112344688875 6899999
Q ss_pred HHHHHHHHHHHHHh
Q psy13906 769 AQYLINMSVELLRA 782 (914)
Q Consensus 769 A~~li~~~i~~~~~ 782 (914)
|+.||+.++...+.
T Consensus 89 A~~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 89 AKKLCENLLQTVHA 102 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchHH
Confidence 99999999975444
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.27 E-value=1.7e-06 Score=81.73 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=60.4
Q ss_pred CCceEEEEEecCc------cccccccCCcchHHHHHhhhCCEEEEcCCCC---C----------CCCCCceEEEEEc-CH
Q psy13906 704 QNQITKEMTVPNE------LIGAVIGKGGTKIFEIRKISGAMIRISKSSE---E----------EEDSNDRTITMTG-TP 763 (914)
Q Consensus 704 ~~~~~~~~~vp~~------~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~---~----------~~~~~~r~i~I~G-~~ 763 (914)
...++.+|.||.+ ++|+|||.+|.+|++|+++|||+|.|..... . ...+.+-.|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 4678899999988 8999999999999999999999999964210 0 0112356789998 58
Q ss_pred HHHHHHHHHHHHHHH
Q psy13906 764 DAIALAQYLINMSVE 778 (914)
Q Consensus 764 ~~v~~A~~li~~~i~ 778 (914)
+.+++|+.+|+.++.
T Consensus 84 e~~~~A~~~I~~ll~ 98 (131)
T 1k1g_A 84 ENVKKAVEQIRNILK 98 (131)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999983
No 65
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=6e-06 Score=76.46 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=60.4
Q ss_pred cceEEEEEeccc-------ccccccccCcchHHHHHhhhCCEEEEcCCCC-------CCCCCCceEEEEEc-CHHHHHHH
Q psy13906 260 NQITKEMTVPNE-------LIGAVIGKGGTKIFEIRKISGAMIRISKSSE-------EEEDSNDRTITMTG-TPDAIALA 324 (914)
Q Consensus 260 ~~~~~~i~Ip~~-------~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~-------~~~~~~~~~i~I~G-~~e~v~~A 324 (914)
..++.++.||.+ +++.|||++|.+|++|+++|||+|.|..... .....++-.|.|.+ +.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 356888888875 7789999999999999999999999973210 01112445788876 68999999
Q ss_pred HHHHHHHHHHHHh
Q psy13906 325 QYLINMSVELLRA 337 (914)
Q Consensus 325 ~~~I~~~ve~~~~ 337 (914)
+.+|++++.....
T Consensus 90 ~~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 90 KKLCENLLQTVHA 102 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhchHH
Confidence 9999999886553
No 66
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.13 E-value=5.3e-06 Score=78.37 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=60.4
Q ss_pred ccceEEEEEeccc------ccccccccCcchHHHHHhhhCCEEEEcCCCCC-------------CCCCCceEEEEEc-CH
Q psy13906 259 QNQITKEMTVPNE------LIGAVIGKGGTKIFEIRKISGAMIRISKSSEE-------------EEDSNDRTITMTG-TP 318 (914)
Q Consensus 259 ~~~~~~~i~Ip~~------~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~-------------~~~~~~~~i~I~G-~~ 318 (914)
...++.++.||.+ +++.|||++|.+|++|+++|||+|.|.....- .....+-.|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3467899999988 88899999999999999999999999753110 0112367899988 57
Q ss_pred HHHHHHHHHHHHHHH
Q psy13906 319 DAIALAQYLINMSVE 333 (914)
Q Consensus 319 e~v~~A~~~I~~~ve 333 (914)
+.+++|+.+|+.++.
T Consensus 84 e~~~~A~~~I~~ll~ 98 (131)
T 1k1g_A 84 ENVKKAVEQIRNILK 98 (131)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999884
No 67
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.98 E-value=1.9e-05 Score=73.25 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=64.0
Q ss_pred EEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHHhc
Q psy13906 708 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRAN 783 (914)
Q Consensus 708 ~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li~~~i~~~~~~ 783 (914)
-..+.|..+.++.|+|++|+.|++|+..|+|.|.|.+-. .++.-.|+|.|++..-+.|+.||+.+.+..+..
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~----s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr~~ 128 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG----PERRAEIWIFGPPPFRRDVDRMLTDLAHYCRMK 128 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC----TTSCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC----CCCcEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999763 236688999999999999999999999866654
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.59 E-value=0.00013 Score=86.35 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCce
Q psy13906 48 SLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTERE 127 (914)
Q Consensus 48 ~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~ 127 (914)
.+..|+..+.++++........+.......-.....|.||.++++.|||++|.+||+|+++|||+|.+.. +..
T Consensus 535 aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-------~G~ 607 (630)
T 3u1k_A 535 AIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-------EET 607 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-------SSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-------CcE
Confidence 3444544444444433332222111112223567889999999999999999999999999999999963 679
Q ss_pred EEEecC-HHHHHHHHHHHHHHh
Q psy13906 128 VNIKGV-PDAVTQAIYQICLIM 148 (914)
Q Consensus 128 V~I~G~-~~~V~~A~~~I~~~l 148 (914)
|.|.+. .+.+++|+.+|..++
T Consensus 608 V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 608 FSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEeCCHHHHHHHHHHHHHHh
Confidence 999987 578899999886543
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.53 E-value=9e-05 Score=70.32 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=52.6
Q ss_pred eEEEEEecCc------cccccccCCcchHHHHHhhhCCEEEEcCCCCCC---------------CCCCceEEEEEcC-HH
Q psy13906 707 ITKEMTVPNE------LIGAVIGKGGTKIFEIRKISGAMIRISKSSEEE---------------EDSNDRTITMTGT-PD 764 (914)
Q Consensus 707 ~~~~~~vp~~------~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~---------------~~~~~r~i~I~G~-~~ 764 (914)
++.+|.||.+ ++|+|||.+|.++++|+++|||+|.|-.+..-. ..+.+=.|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 3556777754 599999999999999999999999998542100 0112236889884 43
Q ss_pred -----HHHHHHHHHHHHH
Q psy13906 765 -----AIALAQYLINMSV 777 (914)
Q Consensus 765 -----~v~~A~~li~~~i 777 (914)
.+++|+.+|+.++
T Consensus 82 ~~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHC
Confidence 7889999998887
No 70
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.48 E-value=0.00012 Score=69.35 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=54.3
Q ss_pred eEEEEEeeccc------cceeeccCchhHHHHHhhcCcEEEEccCCCC-----------------CCCCceEEEecC-HH
Q psy13906 80 IQLRLIVPASQ------CGSIIGKGGSQIKTIRETSGASVYVASDMLP-----------------NSTEREVNIKGV-PD 135 (914)
Q Consensus 80 ~~~~l~Vp~~~------vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~-----------------~~~dr~V~I~G~-~~ 135 (914)
.+.+|.||.+. +|.|||++|.++|+|+++|||+|.+..+..- ...+-.|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 45678888655 8999999999999999999999999853200 112237788875 32
Q ss_pred -----HHHHHHHHHHHHhcc
Q psy13906 136 -----AVTQAIYQICLIMVD 150 (914)
Q Consensus 136 -----~V~~A~~~I~~~l~~ 150 (914)
.+.+|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 789999999998863
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.44 E-value=0.00023 Score=84.24 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=55.1
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecC-HHHHHHHHHHHHHHh
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIM 593 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~-~e~V~~A~~~I~~~l 593 (914)
.+....+.||.+.+|.|||+||++||+|+++|||+|.+..+ -.|.|.++ .+.+++|+..|..++
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~-------G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE-------ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------SEEEEEESSHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC-------cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999998753 68999987 578899999988765
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.90 E-value=0.0029 Score=58.75 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=63.3
Q ss_pred EEEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy13906 263 TKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLR 336 (914)
Q Consensus 263 ~~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~~~ve~~~ 336 (914)
...|.+....++.|+|++|+.|..|+..|++.|+|..-+ .++...|+|.|++..-..|+.+|..+++..+
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~----s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr 126 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG----PERRAEIWIFGPPPFRRDVDRMLTDLAHYCR 126 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC----TTSCEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC----CCCcEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998642 2367899999999999999999999998765
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.56 E-value=0.0016 Score=77.90 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=12.0
Q ss_pred ceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecC-HHHHHHHHHHHHHHhcc
Q psy13906 79 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIMVD 150 (914)
Q Consensus 79 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~-~~~V~~A~~~I~~~l~~ 150 (914)
.....+.||.++++.|||++|.+||+|.++||++|.+.. +..|.|.+. .+.+++|+.+|..++.+
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-------dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-------DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp CC--------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-------CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 456789999999999999999999999999999998853 567888766 78889999999887754
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.49 E-value=0.0019 Score=77.24 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=12.4
Q ss_pred cceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecC-HHHHHHHHHHHHHHhccC
Q psy13906 523 QLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 523 ~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~-~e~V~~A~~~I~~~l~e~ 596 (914)
.+....+.||.+.++.|||+||.+||+|.++||++|.+..+ ..|.|.+. .+.+++|+..|..++.+.
T Consensus 568 ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd-------G~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 568 APKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD-------GVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp CCC--------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred CCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC-------ceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 34567899999999999999999999999999999987643 56777775 788899999999988653
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.35 E-value=0.00086 Score=64.01 Aligned_cols=97 Identities=24% Similarity=0.314 Sum_probs=67.1
Q ss_pred CCcceeeeeccCchhHHHHHHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceE
Q psy13906 2 QGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQ 81 (914)
Q Consensus 2 ~s~~vg~iIGk~G~~Ik~I~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (914)
+...+|..||++|++|+.|.++.|-+|.|-..+.+ ....|...+....-..-. ....+....
T Consensus 43 k~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d---------------~~~fI~naLsPA~V~~V~---i~~~~~~~~ 104 (144)
T 2cxc_A 43 SEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD---------------LERIVKNLFPGVKIESIN---VRERNGVKQ 104 (144)
T ss_dssp CTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS---------------HHHHHHHHSTTSCEEEEE---EEEETTEEE
T ss_pred eCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC---------------HHHHHHHhcCCceEEEEE---EeecCCcEE
Confidence 45678999999999999999999999998664221 122222222211100000 000012467
Q ss_pred EEEEeeccccceeeccCchhHHHHHhhcCcEEEEc
Q psy13906 82 LRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 116 (914)
Q Consensus 82 ~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~ 116 (914)
+.+.||..+.+..|||+|.+++-..+-||.+|.+.
T Consensus 105 ~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 105 VVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 88999999999999999999999999999887663
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.04 E-value=0.0013 Score=62.78 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=72.4
Q ss_pred ceeecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy13906 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGN 519 (914)
Q Consensus 440 ~~~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~ 519 (914)
-.+.+.|+...+|..||++|++|+.|+++.|-+|.|-.-+.. + ...|...+.-..-. .-.. .
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d---------~------~~fI~naLsPA~V~-~V~i--~ 97 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD---------L------ERIVKNLFPGVKIE-SINV--R 97 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS---------H------HHHHHHHSTTSCEE-EEEE--E
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC---------H------HHHHHHhcCCceEE-EEEE--e
Confidence 567788999999999999999999999999999988654322 1 11222222110000 0000 0
Q ss_pred CCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 520 GESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 520 ~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
..+......+.||..+.+..|||+|.+++-..+-||.++.+.
T Consensus 98 ~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 98 ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 001245678899999999999999999999999999877664
No 77
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.24 E-value=0.035 Score=60.75 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=67.7
Q ss_pred cceeeeeccCchhHHHHHHHh-CCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 4 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I~~et-ga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
+-+|..||++|.+|+.|.++. |-+|.|-..+.+ ...+|...+....-..-. .........
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d---------------p~~fi~nalsPA~V~~V~----~~~~~~~~a 309 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD---------------PARFVANALSPAKVVSVS----VIDQTARAA 309 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS---------------HHHHHHHHTTTSCCSEEE----EEETTTTEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC---------------HHHHHHHhcCCcceeEEE----EEcCCCcEE
Confidence 357899999999999999998 999999664222 122222222211100000 001114578
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEccC
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD 118 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~ 118 (914)
.+.||..+.+..|||+|.+++-..+-||.+|.+..+
T Consensus 310 ~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 310 RVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 899999999999999999999999999999999653
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.17 E-value=0.028 Score=58.29 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=65.6
Q ss_pred cceeeeeccCchhHHHH-HHHhCCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEE
Q psy13906 4 KEVGSIIGKSGETVKKL-REESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I-~~etga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (914)
+-+|+.||++|.+|+.| ++-.|-+|.|-..+.+ ...+|...+....-..-. .........
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d---------------p~~fi~nalsPA~V~~V~----i~~~~~~~a 186 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD---------------PARFVANALSPAKVVSVS----VIDQTARAA 186 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS---------------HHHHHHHHTTTSCCSEEE----EEETTTTEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC---------------HHHHHHhccCCcceEEEE----EEcCCCcEE
Confidence 34789999999999999 5557999999665322 112222222211100000 000113468
Q ss_pred EEEeeccccceeeccCchhHHHHHhhcCcEEEEccC
Q psy13906 83 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD 118 (914)
Q Consensus 83 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~ 118 (914)
.+.||..+.+.-|||+|.||+--.+-||.+|.+...
T Consensus 187 ~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 187 RVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp EEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred EEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 899999999999999999999999999999999653
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=93.60 E-value=0.05 Score=56.39 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=37.0
Q ss_pred eEEEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCC
Q psy13906 707 ITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSE 747 (914)
Q Consensus 707 ~~~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~ 747 (914)
.+..+.||.+..+.-|||+|.||+--.+.||.+|.|....+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 35789999999999999999999999999999999986543
No 80
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.08 E-value=0.063 Score=64.53 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred ceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecC-HHHHHHHHHHHHHHhc
Q psy13906 79 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIMV 149 (914)
Q Consensus 79 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~-~~~V~~A~~~I~~~l~ 149 (914)
.....+.||.+.++.+||++|.+|++|.+++|+.|.+.. +..|.|.+. .+.+++|..+|..++.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 456778999999999999999999999999999997753 567777655 5667778777766543
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.46 E-value=0.08 Score=63.62 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=0.0
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecC-HHHHHHHHHHHHHHhcc
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIMVD 595 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~-~e~V~~A~~~I~~~l~e 595 (914)
+....+.||.+..+.+||++|.+|++|.++||+.|.+.. +..|.|.+. .+.+++|...|..++.+
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 456778999999999999999999999999999987754 355666664 46677787777776644
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=91.30 E-value=0.042 Score=66.33 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=21.1
Q ss_pred ceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecC-HHHHHHHHHHHHHHh
Q psy13906 79 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIM 148 (914)
Q Consensus 79 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~-~~~V~~A~~~I~~~l 148 (914)
.....|.||.+.++.+||++|.+||+|.+++|+.|.+.. +..|.|... ....++|..+|..+.
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC---------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 344568899999999999999999999999999998853 567777654 566666766665543
No 83
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=90.81 E-value=0.12 Score=56.62 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=66.6
Q ss_pred ceEeEEEeCCchhHHHHHHHh-CCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEE
Q psy13906 449 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 527 (914)
Q Consensus 449 ~~vg~IIGk~G~~Ik~I~~et-ga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~ 527 (914)
+-+|..||++|++|+.|.++. |-+|.|-.-+.. ....|...+.-..-..-... .+.....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d---------------p~~fi~nalsPA~V~~V~~~----~~~~~~a 309 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD---------------PARFVANALSPAKVVSVSVI----DQTARAA 309 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS---------------HHHHHHHHTTTSCCSEEEEE----ETTTTEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC---------------HHHHHHHhcCCcceeEEEEE----cCCCcEE
Confidence 568999999999999999999 888888643221 11122222211000000000 0113467
Q ss_pred EEEecCCccceeeccCCchHHHHHhhcCceEEEccC
Q psy13906 528 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD 563 (914)
Q Consensus 528 ~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~ 563 (914)
.+.||..+.+..|||+|.+++-..+-||.+|.|..+
T Consensus 310 ~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 310 RVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 899999999999999999999999999999999764
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=89.62 E-value=0.078 Score=63.95 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred ceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecC-HHHHHHHHHHHHHHh
Q psy13906 524 LIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGV-PDAVTQAIYQICLIM 593 (914)
Q Consensus 524 ~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~-~e~V~~A~~~I~~~l 593 (914)
+....+.||.+.+|.+||++|.+||+|.++||+.|.+.. +..|.|... .+..++|+..|..+.
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC---------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 444568899999999999999999999999999998764 356666664 455666766666654
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=87.11 E-value=0.34 Score=52.80 Aligned_cols=94 Identities=21% Similarity=0.316 Sum_probs=64.9
Q ss_pred cceeeeeccCchhHHHHHHHh-CCeEEecCCCCCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCC-CCcceE
Q psy13906 4 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNG-ESQLIQ 81 (914)
Q Consensus 4 ~~vg~iIGk~G~~Ik~I~~et-ga~I~v~~~~~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~-~~~~~~ 81 (914)
+-+|+.||.+|.+|+.+..|. |-+|.|-..+.+ + ..+|...|....-. .-.. ......
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d---------~------~~fi~nal~Pa~v~-----~v~~~d~~~~~ 304 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD---------P------KQLIANALAPATVI-----EVEILDKENKA 304 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS---------H------HHHHHHHTCSSCCS-----EEEEEETTTTE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC---------H------HHHHHHhcCccEEE-----EEEEEcCCCCE
Confidence 347899999999999999998 899888654211 1 11122212110000 0000 011457
Q ss_pred EEEEeeccccceeeccCchhHHHHHhhcCcEEEEcc
Q psy13906 82 LRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 117 (914)
Q Consensus 82 ~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~ 117 (914)
..+.||..+.+.-|||+|.||+--.+-||.+|.+..
T Consensus 305 ~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 889999999999999999999999999999998864
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=85.11 E-value=0.42 Score=52.11 Aligned_cols=96 Identities=21% Similarity=0.321 Sum_probs=65.0
Q ss_pred ceEeEEEeCCchhHHHHHHHh-CCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEE
Q psy13906 449 KEVGSIIGKSGETVKKLREES-GSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 527 (914)
Q Consensus 449 ~~vg~IIGk~G~~Ik~I~~et-ga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~ 527 (914)
+-+|..||.+|.+|+.|.++. |-+|.|-.-+.. + ...|...|.-..-. .-.. . .+.....
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d---------~------~~fi~nal~Pa~v~-~v~~--~-d~~~~~~ 305 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD---------P------KQLIANALAPATVI-EVEI--L-DKENKAA 305 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS---------H------HHHHHHHTCSSCCS-EEEE--E-ETTTTEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC---------H------HHHHHHhcCccEEE-EEEE--E-cCCCCEE
Confidence 457999999999999999999 778877543211 0 11222222110000 0000 0 0123467
Q ss_pred EEEecCCccceeeccCCchHHHHHhhcCceEEEccC
Q psy13906 528 RLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASD 563 (914)
Q Consensus 528 ~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~ 563 (914)
.+.||..+.+..|||+|.+++--.+-||.+|.+..+
T Consensus 306 ~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 306 RVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 899999999999999999999999999999998653
No 87
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=41.29 E-value=2e+02 Score=27.92 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=65.9
Q ss_pred EEEEEc--ChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 484 IVTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 484 vv~I~G--~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
.++++| +.+++..|...+.++++++.-.. .....+++=.|-...++ -.-++..|....+..+...
T Consensus 60 Kiv~TGaks~e~~~~a~~~i~~~L~~lg~~~--------~~~~~~i~NIvas~dl~-----~~I~Le~la~~~~~~~~YE 126 (180)
T 1ytb_A 60 KMVVTGAKSEDDSKLASRKYARIIQKIGFAA--------KFTDFKIQNIVGSCDVK-----FPIRLEGLAFSHGTFSSYE 126 (180)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTCCC--------CCEEEEEEEEEEEEECS-----SCBCHHHHHHHTTTTEECC
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcCCCc--------ccccceEEEEEEEEECC-----CccCHHHHHHhcccceEEC
Confidence 488888 68999999999999998863210 01123332233222222 2345777777767677777
Q ss_pred cCCCCCC--------------CcceEEEecC--HHHHHHHHHHHHHHhccC
Q psy13906 562 SDMLPNS--------------TEREVNIKGV--PDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 562 ~~~~p~~--------------~er~V~I~G~--~e~V~~A~~~I~~~l~e~ 596 (914)
++.+|.- ..-.|+|+|. .+.+.+|+..|..+|.+.
T Consensus 127 PE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~~ 177 (180)
T 1ytb_A 127 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177 (180)
T ss_dssp TTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 7777741 2345778884 689999999999998764
No 88
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=37.91 E-value=2.2e+02 Score=27.62 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=64.3
Q ss_pred eEEEEEc--ChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEE
Q psy13906 38 RIVTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYV 115 (914)
Q Consensus 38 rvV~I~G--~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v 115 (914)
--|+++| +.+++..|...+.+++++..-.. ....+.++=.|-+..++. .-++..|....+..+..
T Consensus 59 GKiv~TGaks~e~~~~a~~~i~~~L~~lg~~~--------~~~~~~i~NIvas~dl~~-----~I~Le~la~~~~~~~~Y 125 (180)
T 1ytb_A 59 GKMVVTGAKSEDDSKLASRKYARIIQKIGFAA--------KFTDFKIQNIVGSCDVKF-----PIRLEGLAFSHGTFSSY 125 (180)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHHTCCC--------CCEEEEEEEEEEEEECSS-----CBCHHHHHHHTTTTEEC
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHcCCCc--------ccccceEEEEEEEEECCC-----ccCHHHHHHhcccceEE
Confidence 3567777 47899999999999998764310 112344433333322222 23567777666666666
Q ss_pred ccCCCCC--------------CCCceEEEecC--HHHHHHHHHHHHHHhccC
Q psy13906 116 ASDMLPN--------------STEREVNIKGV--PDAVTQAIYQICLIMVDS 151 (914)
Q Consensus 116 ~~~~~~~--------------~~dr~V~I~G~--~~~V~~A~~~I~~~l~~~ 151 (914)
.+|..|. -....|.|+|. .+.+.+|++.|..+|.+.
T Consensus 126 EPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~~ 177 (180)
T 1ytb_A 126 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177 (180)
T ss_dssp CTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 5554443 23456778887 578999999999998764
No 89
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=35.91 E-value=2.2e+02 Score=28.58 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=65.7
Q ss_pred EEEEc--ChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEcc
Q psy13906 485 VTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVAS 562 (914)
Q Consensus 485 v~I~G--~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~ 562 (914)
++|+| +.+++..|...+.++|++..-. -.....+++-.|-...+++=| .+..|....+..+...+
T Consensus 99 iV~TGAkS~e~a~~A~~ki~~~L~~lG~~--------v~~~~fkIqNIvas~dl~f~I-----~Le~la~~~~~~~~YEP 165 (218)
T 3eik_A 99 MVITGAKSEKSSRMAAQRYAKIIHKLGFN--------ATFDDFKIQNIVSSCDIKFSI-----RLEGLAYAHSNYCSYEP 165 (218)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTTCC--------CCCEEEEEEEEEEEEECSSCB-----CHHHHHHHSTTTEECCT
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCCC--------cccccceEEEEEEEEECCCcC-----cHHHHHHhccCCcEECC
Confidence 77777 4899999999999999875321 011234444445444444333 36677766666666666
Q ss_pred CCCCCC--------------CcceEEEecC--HHHHHHHHHHHHHHhccC
Q psy13906 563 DMLPNS--------------TEREVNIKGV--PDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 563 ~~~p~~--------------~er~V~I~G~--~e~V~~A~~~I~~~l~e~ 596 (914)
+.+|.- ..-.|+|+|. .+.+..|...|..+|.+.
T Consensus 166 E~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 166 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp TTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 666641 2456778885 689999999999999774
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=35.63 E-value=14 Score=32.17 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=23.8
Q ss_pred eEEEEEeeccccceeeccCchhHHHHHh
Q psy13906 80 IQLRLIVPASQCGSIIGKGGSQIKTIRE 107 (914)
Q Consensus 80 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~ 107 (914)
..+++.|....-|.|||++|..|++|+.
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 3577888888899999999999998765
No 91
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=33.21 E-value=2.3e+02 Score=28.41 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=64.1
Q ss_pred EEEEEcC--hhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEc
Q psy13906 39 IVTVIGS--MDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 116 (914)
Q Consensus 39 vV~I~G~--~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~ 116 (914)
.|+|+|. .+.+..|...+.+++++..-. .....++++-.|-...++.=| .+..|....+..+...
T Consensus 98 KiV~TGAkS~e~a~~A~~ki~~~L~~lG~~--------v~~~~fkIqNIvas~dl~f~I-----~Le~la~~~~~~~~YE 164 (218)
T 3eik_A 98 KMVITGAKSEKSSRMAAQRYAKIIHKLGFN--------ATFDDFKIQNIVSSCDIKFSI-----RLEGLAYAHSNYCSYE 164 (218)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTTCC--------CCCEEEEEEEEEEEEECSSCB-----CHHHHHHHSTTTEECC
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcCCC--------cccccceEEEEEEEEECCCcC-----cHHHHHHhccCCcEEC
Confidence 4556655 678999999999988875421 111245555555554444332 4566666555555555
Q ss_pred cCCCCC--------------CCCceEEEecC--HHHHHHHHHHHHHHhccC
Q psy13906 117 SDMLPN--------------STEREVNIKGV--PDAVTQAIYQICLIMVDS 151 (914)
Q Consensus 117 ~~~~~~--------------~~dr~V~I~G~--~~~V~~A~~~I~~~l~~~ 151 (914)
++..|. -....|.|+|. .+.+..|++.|..+|.+.
T Consensus 165 PE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 165 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp TTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 544443 23567888887 579999999999999765
No 92
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=32.88 E-value=19 Score=34.25 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=42.9
Q ss_pred eEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 80 IQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 150 (914)
Q Consensus 80 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 150 (914)
.++.+.+..+..|.||||.|.+++.|+--+...+.-.. . ..-.+.+.+-.+.-++.+..+...+.+
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~----~-~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY----G-YSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH----S-CEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC----C-ceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 35777888899999999999999998854422221100 0 011334556677777777777766654
No 93
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=32.82 E-value=2.7e+02 Score=24.83 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=57.3
Q ss_pred CCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCc-----------hhHH
Q psy13906 35 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGG-----------SQIK 103 (914)
Q Consensus 35 ~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G-----------~~Ik 103 (914)
+.+-+|.|+|-++.|.+-+..-.+.+... ++. .+++++.=.-+-+ ..|=..| ..|+
T Consensus 40 gn~l~i~itgvpeqvrkelakeaerl~~e---fni---------~v~y~imgsgsgv-m~i~f~gddlea~ekalkemir 106 (170)
T 4hhu_A 40 GNRLVIVITGVPEQVRKELAKEAERLKAE---FNI---------NVQYQIMGSGSGV-MVIVFEGDDLEALEKALKEMIR 106 (170)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHHHHHHHH---HTC---------EEEEEEECTTCCE-EEEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHHHh---cce---------EEEEEEEeCCceE-EEEEEecCcHHHHHHHHHHHHH
Confidence 46778999999999988766655555332 221 3344443322221 1222333 2344
Q ss_pred HHHhhcCcEEEEccCCCCCCCCceEEEecCHHHHHHHHHHHHHHhcc
Q psy13906 104 TIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 150 (914)
Q Consensus 104 ~I~~~sga~I~v~~~~~~~~~dr~V~I~G~~~~V~~A~~~I~~~l~~ 150 (914)
+-++-.|+--+.. +.++-.|.|+|.|++|++-+..=.++|..
T Consensus 107 qarkfagtvtytl-----~gn~l~i~itgvpeqvrkelakeaerl~~ 148 (170)
T 4hhu_A 107 QARKFAGTVTYTL-----SGNRLVIVITGVPEQVRKELAKEAERLKA 148 (170)
T ss_dssp HHHHTTCEEEEEE-----CSSEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcceEEEEE-----eCCEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 4555556544433 34566889999999998866665666643
No 94
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=31.82 E-value=16 Score=34.86 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=43.4
Q ss_pred EEEEEecCCccceeeccCCchHHHHHhhcCceEEEccCCCCCCCcceEEEecCHHHHHHHHHHHHHHhccC
Q psy13906 526 QLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 526 ~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~~~~~p~~~er~V~I~G~~e~V~~A~~~I~~~l~e~ 596 (914)
++.+.+.-...|.||||.|.+++.|+--+..-+. +.. .-.-.+-+.|--+.-++.+..+...+++.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn--~~~---~~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH--PTY---GYSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH--HHH---SCEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhh--hcC---CceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 4667778889999999999999998865522111 100 01123556677777777777777666554
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=29.97 E-value=31 Score=35.01 Aligned_cols=109 Identities=9% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCceEEEEEcChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEE
Q psy13906 35 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVY 114 (914)
Q Consensus 35 ~~ervV~I~G~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~ 114 (914)
...-+|.++=..+...+|...+.+++....-...... ........+.+.|.....+.|||++|.+++.|+--+...+.
T Consensus 49 ~k~a~V~v~~~~~~~~~a~~~L~~ll~~m~~~~~i~~--~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 49 SKPAIIRAKRKETLQDKAIEFLEQVFDAMNMAVDISV--EYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp CBCEEEEEEECCCHHHHHHHHHHHHHHHTTCCCEEEE--EEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeccchHHHHHHHHHHHHHHcCCCeEEEE--EEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 3455777776666677888888888876543111000 00011234667777788999999999999999977665442
Q ss_pred EccCCCCCCCCc-eEEEecCHHHHHHHHHHHHHHhc
Q psy13906 115 VASDMLPNSTER-EVNIKGVPDAVTQAIYQICLIMV 149 (914)
Q Consensus 115 v~~~~~~~~~dr-~V~I~G~~~~V~~A~~~I~~~l~ 149 (914)
-.. ...-+ .|-|.|-.+.-++.+..+...+.
T Consensus 127 ~~~----~~~~rv~LDi~~YR~rR~e~L~~lA~~~A 158 (225)
T 3gku_A 127 KSS----SDYIRVKLDTENYRERRKETLETLAKNIA 158 (225)
T ss_dssp HTC----SSCCEEEEESTTHHHHHHHHHHHHHHHHH
T ss_pred hcC----CCceEEEEecchHHHHHHHHHHHHHHHHH
Confidence 211 11111 33445666666666665555443
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=28.51 E-value=1e+02 Score=31.33 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=45.4
Q ss_pred EEEEecccccccccccCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHH
Q psy13906 264 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLIN 329 (914)
Q Consensus 264 ~~i~Ip~~~vg~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~~~~~~~i~I~G~~e~v~~A~~~I~ 329 (914)
.-+.++..++.+++|+++..++.|.+.+++.|.+- .+-.|-|.++.+....+...|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG---------~NG~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG---------QNGLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC---------TTSEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE---------CCcEEEEeCCchhHHHHHHHHH
Confidence 45689999999999999999999999999999985 3457778888765555544443
No 97
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=27.36 E-value=2.3e+02 Score=28.94 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=61.7
Q ss_pred EEEEEc--ChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCcceEEEEEeeccccceeeccCchhHHHHHhhcCcEEEEc
Q psy13906 39 IVTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 116 (914)
Q Consensus 39 vV~I~G--~~e~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~sga~I~v~ 116 (914)
-|+|+| +.+.+..|...|.+++++..-.. ....+.++=.|-...++. .-++..|....+-.+...
T Consensus 120 KiV~TGaks~e~a~~A~~~i~~~L~~lg~~~--------~~~~f~IqNIVas~dl~f-----~I~Le~la~~~~~~~~YE 186 (240)
T 1rm1_A 120 KMVVTGAKSEDDSKLASRKYARIIQKIGFAA--------KFTDFKIQNIVGSCDVKF-----PIRLEGLAFSHGTFSSYE 186 (240)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTCCC--------CCEEEEEEEEEEEEECSS-----CBCHHHHHHHTTTTEEEE
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcCCCc--------ccCcceEEEEEEEEeCCC-----ccCHHHHHHhchhccEEC
Confidence 566777 47899999999999998764310 111333333333322222 235666666655555555
Q ss_pred cCCCCC--------------CCCceEEEecC--HHHHHHHHHHHHHHhccC
Q psy13906 117 SDMLPN--------------STEREVNIKGV--PDAVTQAIYQICLIMVDS 151 (914)
Q Consensus 117 ~~~~~~--------------~~dr~V~I~G~--~~~V~~A~~~I~~~l~~~ 151 (914)
+|..|. -....|.|+|. .+.+..|++.|..+|.+.
T Consensus 187 PE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~~~~~Ai~~i~p~L~~~ 237 (240)
T 1rm1_A 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237 (240)
T ss_dssp TTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccCCceEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 543332 23456778887 579999999999998764
No 98
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=27.26 E-value=22 Score=30.80 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEecCccccccccCCcchHHHHHh
Q psy13906 708 TKEMTVPNELIGAVIGKGGTKIFEIRK 734 (914)
Q Consensus 708 ~~~~~vp~~~~g~iIG~~G~~I~~I~~ 734 (914)
..+|.|=...-|.|||++|..|++|++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 456777777889999999999998864
No 99
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=26.59 E-value=2.3e+02 Score=28.85 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=64.4
Q ss_pred EEEEEc--ChhHHHHHHHHHHHHHHHhhhcccccCCCCCCCcceEEEEEecCCccceeeccCCchHHHHHhhcCceEEEc
Q psy13906 484 IVTVIG--SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVA 561 (914)
Q Consensus 484 vv~I~G--~~e~V~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~~G~IIGkgG~~IkeI~~~tga~I~v~ 561 (914)
.++|+| +.+++..|...|.++|+++.-.. .....+++=.|-...++. .-++..|....+-.+...
T Consensus 120 KiV~TGaks~e~a~~A~~~i~~~L~~lg~~~--------~~~~f~IqNIVas~dl~f-----~I~Le~la~~~~~~~~YE 186 (240)
T 1rm1_A 120 KMVVTGAKSEDDSKLASRKYARIIQKIGFAA--------KFTDFKIQNIVGSCDVKF-----PIRLEGLAFSHGTFSSYE 186 (240)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTCCC--------CCEEEEEEEEEEEEECSS-----CBCHHHHHHHTTTTEEEE
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcCCCc--------ccCcceEEEEEEEEeCCC-----ccCHHHHHHhchhccEEC
Confidence 488888 68999999999999998863210 011222222222222222 345777777666667766
Q ss_pred cCCCCCC--------------CcceEEEecC--HHHHHHHHHHHHHHhccC
Q psy13906 562 SDMLPNS--------------TEREVNIKGV--PDAVTQAIYQICLIMVDS 596 (914)
Q Consensus 562 ~~~~p~~--------------~er~V~I~G~--~e~V~~A~~~I~~~l~e~ 596 (914)
++.+|.- ..-.|+|+|. .+.+.+|+..|..+|.+.
T Consensus 187 PE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~~~~~Ai~~i~p~L~~~ 237 (240)
T 1rm1_A 187 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237 (240)
T ss_dssp TTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccCCceEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 6666531 2346778884 789999999999998764
No 100
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.53 E-value=1.2e+02 Score=30.70 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=43.8
Q ss_pred EEEEecCccccccccCCcchHHHHHhhhCCEEEEcCCCCCCCCCCceEEEEEcCHHHHHHHHHHH
Q psy13906 709 KEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLI 773 (914)
Q Consensus 709 ~~~~vp~~~~g~iIG~~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~li 773 (914)
.-+.++..++.+++|+++..++.|.+.+++.|.|-.+ ..|-|.++.+.+..+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN---------GLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT---------SEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC---------cEEEEeCCchhHHHHHHHH
Confidence 3568999999999999999999999999999999742 3466888876544444333
No 101
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=22.31 E-value=11 Score=38.47 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=39.9
Q ss_pred eecccCcceEeEEEeCCchhHHHHHHHhCCeEEeeCCCCCeeEEEEEcChhHHHHHHHHHHHHHH
Q psy13906 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIE 506 (914)
Q Consensus 442 ~ri~vp~~~vg~IIGk~G~~Ik~I~~etga~I~i~~~~~~ervv~I~G~~e~V~~A~~~I~~~i~ 506 (914)
+.+.+.....|.+||+.|++++.|+.-++..++-.......-+|-|.|-.+.-.+....+...+.
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A 158 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRERRKETLETLAKNIA 158 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHHHHHHHHHHHHHHHHH
Confidence 44556677899999999999999999887554332111112234455555555555554444443
Done!