Your job contains 1 sequence.
>psy13906
MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI
EEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSIIGKGGSQIKTIRETSGASVYVASDML
PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQ
NSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLNAAALAALASSQLKTNHMPRNQNQNQ
NQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRISKS
SEEEEDSNDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPS
SAPLAGLNASNPLAAALPQLAQILTKPGALNALTSLSALGGLSDLLGGGSSGGGSGNSGG
FGGVPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSST
PERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCGSII
GKGGSQIKTIRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKG
ATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAPDMGNNPLAGLAALGLGGNSGGGMGGGLN
AAALAALASSQLKTNHMPRNQNQNQNQHNRNNRDGPSQKTNQQQNQITKEMTVPNELIGA
VIGKGGTKIFEIRKISGAMIRISKSSEEEEDSNDRTITMTGTPDAIALAQYLINMSVELL
RANLNGEGGGESNMDDFSSDNNLPSSAPLAGLNASNPLAAALPQLAQILTKPAGLNASNP
LAAALPQLAQILTKPGALNALTSLSALGGLSDLLGGGSSGGGSGNSGGFGGVPQGPNYAN
IQTTGVQRRNSLSV
The BLAST search returned 12 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13906
(914 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 483 9.8e-73 3
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 451 4.3e-63 3
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 451 1.1e-62 3
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 451 1.1e-62 3
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 451 1.1e-62 3
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 451 1.1e-62 3
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 455 1.4e-60 3
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 451 3.3e-59 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 451 3.3e-59 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 451 4.2e-59 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 449 8.8e-59 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 445 8.8e-59 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 455 1.8e-58 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 440 6.9e-57 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 424 2.6e-55 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 421 5.2e-55 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 410 1.7e-54 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 420 2.4e-54 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 420 2.4e-54 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 379 2.5e-54 3
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 420 3.0e-54 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 420 3.0e-54 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 416 3.1e-54 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 414 5.6e-54 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 416 6.5e-54 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 414 1.2e-53 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 411 1.4e-53 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 411 1.4e-53 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 416 5.8e-53 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 410 6.3e-53 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 409 6.5e-53 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 405 2.1e-52 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 405 2.1e-52 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 405 2.7e-52 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 405 2.7e-52 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 400 1.1e-51 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 392 3.1e-49 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 388 9.5e-49 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 388 9.5e-49 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 388 9.5e-49 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 388 9.5e-49 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 388 9.5e-49 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 435 5.9e-41 1
UNIPROTKB|F1LU04 - symbol:F1LU04 "Uncharacterized protein... 321 1.9e-40 2
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 420 2.6e-39 1
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 420 2.6e-39 1
UNIPROTKB|I3LRF8 - symbol:PCBP3 "Uncharacterized protein"... 384 3.5e-37 2
UNIPROTKB|D4A8D6 - symbol:D4A8D6 "Uncharacterized protein... 308 6.9e-37 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 245 1.4e-36 3
UNIPROTKB|F1LT74 - symbol:F1LT74 "Uncharacterized protein... 272 1.4e-36 2
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 395 2.2e-36 1
UNIPROTKB|D4ADH2 - symbol:D4ADH2 "Uncharacterized protein... 275 2.7e-36 2
UNIPROTKB|Q9GZT1 - symbol:PCBP4 "Poly(rC)-binding protein... 196 6.8e-34 3
UNIPROTKB|D4ACH3 - symbol:D4ACH3 "Uncharacterized protein... 364 6.8e-33 1
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 230 1.6e-32 2
UNIPROTKB|F1M8T3 - symbol:F1M8T3 "Uncharacterized protein... 351 1.9e-31 1
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 345 8.6e-31 1
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 318 7.8e-28 1
UNIPROTKB|F8VRH0 - symbol:PCBP2 "Poly(rC)-binding protein... 198 3.1e-27 2
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 301 5.6e-26 1
ASPGD|ASPL0000075803 - symbol:AN4546 species:162425 "Emer... 229 3.8e-23 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 200 4.5e-23 2
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 199 6.0e-23 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 198 7.8e-23 2
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 199 8.8e-23 3
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 196 1.4e-22 2
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 218 2.1e-22 2
UNIPROTKB|E2RCG0 - symbol:PCBP2 "Uncharacterized protein"... 173 2.2e-22 2
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 199 3.2e-22 2
UNIPROTKB|F8W1G6 - symbol:PCBP2 "Poly(rC)-binding protein... 226 4.8e-22 2
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 186 2.1e-21 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 177 2.0e-20 2
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 190 2.1e-20 2
UNIPROTKB|C9JTY5 - symbol:PCBP4 "Poly(rC)-binding protein... 223 2.3e-20 2
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 141 7.7e-20 3
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 141 7.7e-20 3
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 141 7.7e-20 3
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 141 7.9e-20 3
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 141 9.9e-20 3
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 141 1.0e-18 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 141 1.0e-18 3
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 141 1.0e-18 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 141 1.0e-18 3
UNIPROTKB|J9P8J3 - symbol:J9P8J3 "Uncharacterized protein... 141 1.2e-18 3
POMBASE|SPCC757.09c - symbol:rnc1 "RNA-binding protein th... 181 8.3e-18 2
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 141 8.6e-18 3
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 152 1.3e-17 3
UNIPROTKB|Q5T6W5 - symbol:HNRNPK "Heterogeneous nuclear r... 151 1.7e-17 2
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 139 2.4e-17 3
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 139 2.4e-17 3
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 139 3.1e-17 3
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 139 3.4e-17 3
CGD|CAL0001510 - symbol:PBP2 species:5476 "Candida albica... 206 3.7e-17 2
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 139 5.4e-17 3
TAIR|locus:2184362 - symbol:BTR1L "AT5G04430" species:370... 122 9.5e-17 3
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 162 9.9e-17 2
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 141 1.0e-16 3
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 141 1.0e-16 3
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 141 1.1e-16 3
UNIPROTKB|F1LXN9 - symbol:F1LXN9 "Uncharacterized protein... 161 1.4e-16 2
WARNING: Descriptions of 122 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 483 (175.1 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 101/179 (56%), Positives = 127/179 (70%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R IMQGKEVGSIIGK GE V + REESG+KI ISD S PERIVTV G+ +++F AF+LI
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNAIFSAFTLI 85
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
TK EEF+ +G G++Q I +RLIVPASQC R+T+G S+ VA
Sbjct: 86 TKKFEEFND-----VGKVGKTQ-IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVA 139
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGN 620
S+MLPNSTER V + G + +TQ IYQICL+M++SPP+GATIPYRP PQ GP ++ N
Sbjct: 140 SEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQ-VTGPVILAN 197
Score = 476 (172.6 bits), Expect = 9.8e-73, Sum P(3) = 9.8e-73
Identities = 99/175 (56%), Positives = 124/175 (70%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
MQGKEVGSIIGK GE V + REESG+KI ISD S PERIVTV G+ +++F AF+LITK
Sbjct: 30 MQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNAIFSAFTLITKKF 89
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EEF+ +G G++Q I +RLIVPASQC R+T+G S+ VAS+ML
Sbjct: 90 EEFND-----VGKVGKTQ-IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEML 143
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGN 175
PNSTER V + G + +TQ IYQICL+M++SPP+GATIPYRP PQ GP ++ N
Sbjct: 144 PNSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQ-VTGPVILAN 197
Score = 250 (93.1 bits), Expect = 9.8e-73, Sum P(3) = 9.8e-73
Identities = 52/84 (61%), Positives = 62/84 (73%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EMTV N+LIG +IGKGGTKI EIR+ISGAMIRI DRTIT++G PD++ALA
Sbjct: 289 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 348
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
QYLINMSVEL +ANL + + N
Sbjct: 349 QYLINMSVELQKANLLEQAQSQQN 372
Score = 250 (93.1 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 52/84 (61%), Positives = 62/84 (73%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
EMTV N+LIG +IGKGGTKI EIR+ISGAMIRI DRTIT++G PD++ALA
Sbjct: 289 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 348
Query: 770 QYLINMSVELLRANLNGEGGGESN 793
QYLINMSVEL +ANL + + N
Sbjct: 349 QYLINMSVELQKANLLEQAQSQQN 372
Score = 88 (36.0 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 431 ANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS-----DSSTPERIV 485
AN Q++ + +G IIGK G + ++R+ SG+ I IS + +R +
Sbjct: 277 ANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTI 336
Query: 486 TVIGSMDSLFRAFSLITKNIE 506
T+ G+ DS+ A LI ++E
Sbjct: 337 TISGNPDSVALAQYLINMSVE 357
Score = 87 (35.7 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP G++IGK G+KI EIR+ +G I++ +R +T++G+ + I
Sbjct: 107 LIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNST--ERAVTLSGSAEQITQCI 164
Query: 326 YLI 328
Y I
Sbjct: 165 YQI 167
Score = 70 (29.7 bits), Expect = 9.0e-21, Sum P(2) = 9.0e-21
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + R+ SGA I I +R +T++GT +AI A LI
Sbjct: 35 VGSIIGKKGEIVNRFREESGAKINISDGSCP-----ERIVTVSGTTNAIFSAFTLITKKF 89
Query: 333 E 333
E
Sbjct: 90 E 90
Score = 58 (25.5 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +++ + +T+R + I G PD+V A Y I
Sbjct: 312 RQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLI 352
Score = 53 (23.7 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDA 136
S + +RLI+ + RE SGA + ++ P ER V + G +A
Sbjct: 21 SVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCP---ERIVTVSGTTNA 77
Query: 137 VTQA 140
+ A
Sbjct: 78 IFSA 81
Score = 53 (23.7 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDA 581
S + +RLI+ + RE SGA + ++ P ER V + G +A
Sbjct: 21 SVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCP---ERIVTVSGTTNA 77
Query: 582 VTQA 585
+ A
Sbjct: 78 IFSA 81
Score = 40 (19.1 bits), Expect = 9.8e-73, Sum P(3) = 9.8e-73
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 425 PQGPNYANIQTTGVQRRMRH 444
P GP +QTTGV R H
Sbjct: 514 PGGPP---VQTTGVNRAKGH 530
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 451 (163.8 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 166
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 167 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 446 (162.1 bits), Expect = 4.3e-63, Sum P(3) = 4.3e-63
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 52 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 111
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 112 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 171 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 173 (66.0 bits), Expect = 4.3e-63, Sum P(3) = 4.3e-63
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++R IT+TGTP I+LA
Sbjct: 296 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SERQITITGTPANISLA 352
Query: 770 QYLIN 774
QYLIN
Sbjct: 353 QYLIN 357
Score = 173 (66.0 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++R IT+TGTP I+LA
Sbjct: 296 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SERQITITGTPANISLA 352
Query: 325 QYLIN 329
QYLIN
Sbjct: 353 QYLIN 357
Score = 112 (44.5 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 112 (44.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 304 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 360
Score = 72 (30.4 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 57 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 111
Query: 333 E 333
E
Sbjct: 112 E 112
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 319 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 356
Score = 60 (26.2 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 52 AFSLITKNIE-EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 110
A L++ + + F + + G + + +RL++ + RE SG
Sbjct: 17 ALGLLSHHPQLHFGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESG 76
Query: 111 ASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144
A + ++ P ER V I G DA+ +A I
Sbjct: 77 ARINISEGNCP---ERIVTITGPTDAIFKAFAMI 107
Score = 60 (26.2 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 497 AFSLITKNIE-EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 555
A L++ + + F + + G + + +RL++ + RE SG
Sbjct: 17 ALGLLSHHPQLHFGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESG 76
Query: 556 ASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
A + ++ P ER V I G DA+ +A I
Sbjct: 77 ARINISEGNCP---ERIVTITGPTDAIFKAFAMI 107
Score = 55 (24.4 bits), Expect = 4.3e-63, Sum P(3) = 4.3e-63
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAP 632
PD +T+ ++Q+ + PP G T P P A L+ + G + L +P
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGTYPAALSDLLSSHLGTLSGLDASP 290
Score = 55 (24.4 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 134 PDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAP 187
PD +T+ ++Q+ + PP G T P P A L+ + G + L +P
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGTYPAALSDLLSSHLGTLSGLDASP 290
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 451 (163.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 166
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 167 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 446 (162.1 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 52 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 111
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 112 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 171 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 174 (66.3 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 174 (66.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 112 (44.5 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 112 (44.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
Score = 72 (30.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 57 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 111
Query: 333 E 333
E
Sbjct: 112 E 112
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 320 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 357
Score = 61 (26.5 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
+F + + G + + +RL++ + RE SGA + ++ P
Sbjct: 28 QFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP 87
Query: 122 NSTEREVNIKGVPDAVTQAIYQI 144
ER V I G DA+ +A I
Sbjct: 88 ---ERIVTITGPTDAIFKAFAMI 107
Score = 61 (26.5 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 566
+F + + G + + +RL++ + RE SGA + ++ P
Sbjct: 28 QFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP 87
Query: 567 NSTEREVNIKGVPDAVTQAIYQI 589
ER V I G DA+ +A I
Sbjct: 88 ---ERIVTITGPTDAIFKAFAMI 107
Score = 50 (22.7 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 627
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
Score = 50 (22.7 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 134 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 182
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 451 (163.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 166
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 167 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 446 (162.1 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 52 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 111
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 112 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 171 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 174 (66.3 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 174 (66.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 112 (44.5 bits), Expect = 3.4e-21, Sum P(4) = 3.4e-21
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 112 (44.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
Score = 72 (30.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 57 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 111
Query: 333 E 333
E
Sbjct: 112 E 112
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 320 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 357
Score = 60 (26.2 bits), Expect = 3.4e-21, Sum P(4) = 3.4e-21
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 52 AFSLITKNIE-EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 110
A L++ + + F + + G + + +RL++ + RE SG
Sbjct: 17 ALGLLSHHPQLHFGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESG 76
Query: 111 ASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144
A + ++ P ER V I G DA+ +A I
Sbjct: 77 ARINISEGNCP---ERIVTITGPTDAIFKAFAMI 107
Score = 60 (26.2 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 497 AFSLITKNIE-EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 555
A L++ + + F + + G + + +RL++ + RE SG
Sbjct: 17 ALGLLSHHPQLHFGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESG 76
Query: 556 ASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
A + ++ P ER V I G DA+ +A I
Sbjct: 77 ARINISEGNCP---ERIVTITGPTDAIFKAFAMI 107
Score = 50 (22.7 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 627
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
Score = 50 (22.7 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 134 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 182
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 451 (163.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 166
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 167 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 446 (162.1 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 52 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 111
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 112 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 171 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 174 (66.3 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 174 (66.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 112 (44.5 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 112 (44.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
Score = 72 (30.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 57 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 111
Query: 333 E 333
E
Sbjct: 112 E 112
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 320 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 357
Score = 50 (22.7 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 627
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
Score = 50 (22.7 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 134 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 182
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 451 (163.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 166
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 167 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 446 (162.1 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 52 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 111
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 112 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 171 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Score = 174 (66.3 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 174 (66.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 338
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 339 RQITITGTPANISLAQYLIN 358
Score = 112 (44.5 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 112 (44.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 187
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
Score = 72 (30.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 57 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 111
Query: 333 E 333
E
Sbjct: 112 E 112
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 320 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 357
Score = 50 (22.7 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 627
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
Score = 50 (22.7 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 134 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 182
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 238 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 290
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 455 (165.2 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 93/171 (54%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ S PERIVT+ G D++F+AFS+I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGPTDAIFKAFSMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + LRL+VPASQC RE++GA V VA
Sbjct: 76 ALKFEE-DINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P +A
Sbjct: 135 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASA 185
Score = 450 (163.5 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 92/167 (55%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ S PERIVT+ G D++F+AFS+I
Sbjct: 20 MHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGPTDAIFKAFSMIALKF 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EE-DINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P +A
Sbjct: 139 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASA 185
Score = 163 (62.4 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G+KI EIR++SGA I+I +R +T+TG+P I+LA
Sbjct: 248 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSA---ERQVTITGSPANISLA 304
Query: 770 QYLIN 774
QYLIN
Sbjct: 305 QYLIN 309
Score = 163 (62.4 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G+KI EIR++SGA I+I +R +T+TG+P I+LA
Sbjct: 248 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSA---ERQVTITGSPANISLA 304
Query: 325 QYLIN 329
QYLIN
Sbjct: 305 QYLIN 309
Score = 112 (44.5 bits), Expect = 4.0e-19, Sum P(4) = 4.0e-19
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 112 (44.5 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 81 (33.6 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++++ + ER VT+ GS ++ A LI
Sbjct: 256 IGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLI 308
Score = 76 (31.8 bits), Expect = 9.6e-13, Sum P(3) = 9.6e-13
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I +
Sbjct: 25 VGSIIGKKGETVKKMREESGARINISEGSCP-----ERIVTITGPTDAIFKAFSMIALKF 79
Query: 333 E 333
E
Sbjct: 80 E 80
Score = 62 (26.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 515 HLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVN 574
H+G + S L +P R+ SGA + +A+ S ER+V
Sbjct: 235 HIGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN-ATEGSAERQVT 293
Query: 575 IKGVPDAVTQAIYQI 589
I G P ++ A Y I
Sbjct: 294 ITGSPANISLAQYLI 308
Score = 60 (26.2 bits), Expect = 4.0e-19, Sum P(4) = 4.0e-19
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 134
G + + +RL++ + RE SGA + ++ P ER V I G
Sbjct: 9 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPT 65
Query: 135 DAVTQAIYQICL 146
DA+ +A I L
Sbjct: 66 DAIFKAFSMIAL 77
Score = 60 (26.2 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 579
G + + +RL++ + RE SGA + ++ P ER V I G
Sbjct: 9 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPT 65
Query: 580 DAVTQAIYQICL 591
DA+ +A I L
Sbjct: 66 DAIFKAFSMIAL 77
Score = 37 (18.1 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRPLPQ---NAGGPGLIGNQFGMQNSLMG 630
PD +T+ ++Q+ + P G T P P+P +A P ++ + N L+G
Sbjct: 206 PD-LTK-LHQLAMQHPPFTPLGQTTPGFPVPHIGLDATSP-TSSHELTIPNDLIG 257
Score = 37 (18.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 134 PDAVTQAIYQICLIMVDSPPKGATIPYRPLPQ---NAGGPGLIGNQFGMQNSLMG 185
PD +T+ ++Q+ + P G T P P+P +A P ++ + N L+G
Sbjct: 206 PD-LTK-LHQLAMQHPPFTPLGQTTPGFPVPHIGLDATSP-TSSHELTIPNDLIG 257
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 451 (163.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 135 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 446 (162.1 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 20 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 139 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 174 (66.3 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 272 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 328
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 329 RQITITGTPANISLAQYLIN 348
Score = 174 (66.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 272 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 328
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 329 RQITITGTPANISLAQYLIN 348
Score = 112 (44.5 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 112 (44.5 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 100 (40.3 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 46/194 (23%), Positives = 81/194 (41%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAF 498
+R ++ + GS+IGK G +K++RE +G+++ ++ P ER VT+ G+ D++ +
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCV 159
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
I + E + I R PAS T+ S+
Sbjct: 160 KQICVVMLE----------SPPKGATIPYRP-KPASTPVIFAGGQVRADPLAASTANLSL 208
Query: 559 YVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG-- 613
+ LP T + PD +T+ ++Q+ + PP G T P P LP ++
Sbjct: 209 LLQPPPLPAYTIQGQYAIPHPD-LTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEE 266
Query: 614 GPGLIGNQFGMQNS 627
L+G G+ S
Sbjct: 267 AQNLMGQSSGLDAS 280
Score = 93 (37.8 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 45/186 (24%), Positives = 77/186 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIE 61
+ GS+IGK G +K++RE +G+++ ++ P ER VT+ G+ D++ + I +
Sbjct: 108 QCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVML 167
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
E + I R PAS T+ S+ + LP
Sbjct: 168 E----------SPPKGATIPYRP-KPASTPVIFAGGQVRADPLAASTANLSLLLQPPPLP 216
Query: 122 NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQ 176
T + PD +T+ ++Q+ + PP G T P P LP ++ L+G
Sbjct: 217 AYTIQGQYAIPHPD-LTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQS 274
Query: 177 FGMQNS 182
G+ S
Sbjct: 275 SGLDAS 280
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 295 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
Score = 72 (30.4 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 25 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 79
Query: 333 E 333
E
Sbjct: 80 E 80
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 310 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 347
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 451 (163.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 135 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 446 (162.1 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 20 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 139 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 174 (66.3 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 272 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 328
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 329 RQITITGTPANISLAQYLIN 348
Score = 174 (66.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 272 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 328
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 329 RQITITGTPANISLAQYLIN 348
Score = 112 (44.5 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 112 (44.5 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 100 (40.3 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 46/194 (23%), Positives = 81/194 (41%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAF 498
+R ++ + GS+IGK G +K++RE +G+++ ++ P ER VT+ G+ D++ +
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCV 159
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
I + E + I R PAS T+ S+
Sbjct: 160 KQICVVMLE----------SPPKGATIPYRP-KPASTPVIFAGGQVRADPLAASTANLSL 208
Query: 559 YVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG-- 613
+ LP T + PD +T+ ++Q+ + PP G T P P LP ++
Sbjct: 209 LLQHPPLPAYTIQGQYAIPHPD-LTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEE 266
Query: 614 GPGLIGNQFGMQNS 627
L+G G+ S
Sbjct: 267 AQNLMGQSSGLDAS 280
Score = 93 (37.8 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 45/186 (24%), Positives = 77/186 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIE 61
+ GS+IGK G +K++RE +G+++ ++ P ER VT+ G+ D++ + I +
Sbjct: 108 QCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVML 167
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
E + I R PAS T+ S+ + LP
Sbjct: 168 E----------SPPKGATIPYRP-KPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLP 216
Query: 122 NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQ 176
T + PD +T+ ++Q+ + PP G T P P LP ++ L+G
Sbjct: 217 AYTIQGQYAIPHPD-LTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQS 274
Query: 177 FGMQNS 182
G+ S
Sbjct: 275 SGLDAS 280
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 295 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
Score = 72 (30.4 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 25 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 79
Query: 333 E 333
E
Sbjct: 80 E 80
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 310 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 347
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 451 (163.8 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 90/168 (53%), Positives = 115/168 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 135 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 446 (162.1 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 89/164 (54%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 20 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 139 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 173 (66.0 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++R IT+TGTP I+LA
Sbjct: 245 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SERQITITGTPANISLA 301
Query: 770 QYLIN 774
QYLIN
Sbjct: 302 QYLIN 306
Score = 173 (66.0 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++R IT+TGTP I+LA
Sbjct: 245 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SERQITITGTPANISLA 301
Query: 325 QYLIN 329
QYLIN
Sbjct: 302 QYLIN 306
Score = 112 (44.5 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 112 (44.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 77 (32.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 253 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 309
Score = 72 (30.4 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 25 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 79
Query: 333 E 333
E
Sbjct: 80 E 80
Score = 61 (26.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 268 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 305
Score = 49 (22.3 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNSLMG 630
PD +T+ ++Q+ + PP G T P P P ++ + N L+G
Sbjct: 206 PDQLTK-LHQLAMQQTPFPPLGQTNP--AFPGLDASPPASTHELTIPNDLIG 254
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 449 (163.1 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 92/182 (50%), Positives = 121/182 (66%)
Query: 431 ANIQTTG---VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTV 487
+ +Q+ G V +R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+
Sbjct: 4 SKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 63
Query: 488 IGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXX 547
G D++F+AF++I EE N + + + LRL+VPASQC
Sbjct: 64 TGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKI 122
Query: 548 XXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
RE++GA V VA DMLPNSTER V I G P+A+ Q + QIC++M++SPPKGATIPYRP
Sbjct: 123 KEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRP 182
Query: 608 LP 609
P
Sbjct: 183 KP 184
Score = 442 (160.7 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 88/164 (53%), Positives = 112/164 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 22 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 81
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 82 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G P+A+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 141 PNSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKP 184
Score = 172 (65.6 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++R IT+TGTP I+LA
Sbjct: 270 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGS---SERQITITGTPANISLA 326
Query: 770 QYLIN 774
QYLIN
Sbjct: 327 QYLIN 331
Score = 172 (65.6 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++R IT+TGTP I+LA
Sbjct: 270 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGS---SERQITITGTPANISLA 326
Query: 325 QYLIN 329
QYLIN
Sbjct: 327 QYLIN 331
Score = 105 (42.0 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI E+R+ +GA +++ +R +T++GTP+AI
Sbjct: 104 LVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNST--ERAVTISGTPEAI 157
Score = 105 (42.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI E+R+ +GA +++ +R +T++GTP+AI
Sbjct: 104 LVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNST--ERAVTISGTPEAI 157
Score = 76 (31.8 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIEE 507
+G IIG+ G + ++R+ SG++I I+++ + ER +T+ G+ ++ A LI +
Sbjct: 278 IGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINARFRD 336
Score = 72 (30.4 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 27 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 81
Query: 333 E 333
E
Sbjct: 82 E 82
Score = 66 (28.3 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ M S+ER++ I G P ++ A Y I
Sbjct: 293 RQMSGAQIKIANAM-EGSSERQITITGTPANISLAQYLI 330
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 445 (161.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 91/185 (49%), Positives = 121/185 (65%)
Query: 431 ANIQTTG---VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTV 487
+ +Q+ G V +R +M GKEVGSIIGK GETVKK+REES ++I +S+ + PERIVT+
Sbjct: 4 SKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGNCPERIVTI 63
Query: 488 IGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXX 547
G D++F+AF++I EE N + + + LRL+VPASQC
Sbjct: 64 TGPTDAIFKAFAMIAYKFEEDIINSMSNSQATSKPP-VTLRLVVPASQCGSLIGKGGSKI 122
Query: 548 XXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
RE++GA V VA DMLPNSTER V I G P+A+ Q + QIC++M++SPPKGATIPYRP
Sbjct: 123 KEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRP 182
Query: 608 LPQNA 612
P A
Sbjct: 183 KPATA 187
Score = 438 (159.2 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 87/167 (52%), Positives = 112/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REES ++I +S+ + PERIVT+ G D++F+AF++I
Sbjct: 22 MHGKEVGSIIGKKGETVKKMREESSARINVSEGNCPERIVTITGPTDAIFKAFAMIAYKF 81
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 82 EEDIINSMSNSQATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER V I G P+A+ Q + QIC++M++SPPKGATIPYRP P A
Sbjct: 141 PNSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKPATA 187
Score = 176 (67.0 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I +DR IT+TGTP I+LA
Sbjct: 270 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGS---SDRQITITGTPANISLA 326
Query: 770 QYLIN 774
QYLIN
Sbjct: 327 QYLIN 331
Score = 176 (67.0 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ GTKI EIR++SGA I+I +DR IT+TGTP I+LA
Sbjct: 270 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGS---SDRQITITGTPANISLA 326
Query: 325 QYLIN 329
QYLIN
Sbjct: 327 QYLIN 331
Score = 105 (42.0 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI E+R+ +GA +++ +R +T++GTP+AI
Sbjct: 104 LVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNST--ERAVTISGTPEAI 157
Score = 105 (42.0 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI E+R+ +GA +++ +R +T++GTP+AI
Sbjct: 104 LVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNST--ERAVTISGTPEAI 157
Score = 73 (30.8 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIEE 507
+G IIG+ G + ++R+ SG++I I+++ + +R +T+ G+ ++ A LI +
Sbjct: 278 IGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLINARFRD 336
Score = 66 (28.3 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--ALAQYLINM 330
+G++IGK G + ++R+ S A I + +R +T+TG DAI A A
Sbjct: 27 VGSIIGKKGETVKKMREESSARINVSEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 81
Query: 331 SVELLRANLNGE 342
+++ + N +
Sbjct: 82 EEDIINSMSNSQ 93
Score = 63 (27.2 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ M S++R++ I G P ++ A Y I
Sbjct: 293 RQMSGAQIKIANAM-EGSSDRQITITGTPANISLAQYLI 330
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 455 (165.2 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 93/171 (54%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ S PERIVT+ G D++F+AFS+I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGPTDAIFKAFSMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + LRL+VPASQC RE++GA V VA
Sbjct: 76 ALKFEE-DINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P +A
Sbjct: 135 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASA 185
Score = 450 (163.5 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 92/167 (55%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ S PERIVT+ G D++F+AFS+I
Sbjct: 20 MHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGPTDAIFKAFSMIALKF 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EE-DINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P +A
Sbjct: 139 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASA 185
Score = 163 (62.4 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G+KI EIR++SGA I+I +R +T+TG+P I+LA
Sbjct: 245 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSA---ERQVTITGSPANISLA 301
Query: 770 QYLIN 774
QYLIN
Sbjct: 302 QYLIN 306
Score = 163 (62.4 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G+KI EIR++SGA I+I +R +T+TG+P I+LA
Sbjct: 245 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSA---ERQVTITGSPANISLA 301
Query: 325 QYLIN 329
QYLIN
Sbjct: 302 QYLIN 306
Score = 112 (44.5 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 112 (44.5 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 81 (33.6 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++++ + ER VT+ GS ++ A LI
Sbjct: 253 IGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLI 305
Score = 76 (31.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I +
Sbjct: 25 VGSIIGKKGETVKKMREESGARINISEGSCP-----ERIVTITGPTDAIFKAFSMIALKF 79
Query: 333 E 333
E
Sbjct: 80 E 80
Score = 60 (26.2 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 134
G + + +RL++ + RE SGA + ++ P ER V I G
Sbjct: 9 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPT 65
Query: 135 DAVTQAIYQICL 146
DA+ +A I L
Sbjct: 66 DAIFKAFSMIAL 77
Score = 60 (26.2 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 579
G + + +RL++ + RE SGA + ++ P ER V I G
Sbjct: 9 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPT 65
Query: 580 DAVTQAIYQICL 591
DA+ +A I L
Sbjct: 66 DAIFKAFSMIAL 77
Score = 59 (25.8 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S ER+V I G P ++ A Y I
Sbjct: 268 RQMSGAQIKIAN-ATEGSAERQVTITGSPANISLAQYLI 305
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 440 (159.9 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 93/175 (53%), Positives = 116/175 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ S PERIVT+ G D++F+AFS+I
Sbjct: 15 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGPTDAIFKAFSMI 74
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + LRL+VPASQC RE++GA V VA
Sbjct: 75 ALKFEE-DINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 133
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 612
DMLPNSTER V I G PDA+ Q + QIC++M++ SPPKGATIPYRP P +A
Sbjct: 134 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEVSEHSPPKGATIPYRPKPASA 188
Score = 435 (158.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 92/171 (53%), Positives = 113/171 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ S PERIVT+ G D++F+AFS+I
Sbjct: 19 MHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGPTDAIFKAFSMIALKF 78
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPASQC RE++GA V VA DML
Sbjct: 79 EE-DINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 137
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 167
PNSTER V I G PDA+ Q + QIC++M++ SPPKGATIPYRP P +A
Sbjct: 138 PNSTERAVTISGTPDAIIQCVKQICVVMLEVSEHSPPKGATIPYRPKPASA 188
Score = 163 (62.4 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G+KI EIR++SGA I+I +R +T+TG+P I+LA
Sbjct: 283 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSA---ERQVTITGSPANISLA 339
Query: 770 QYLIN 774
QYLIN
Sbjct: 340 QYLIN 344
Score = 163 (62.4 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G+KI EIR++SGA I+I +R +T+TG+P I+LA
Sbjct: 283 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSA---ERQVTITGSPANISLA 339
Query: 325 QYLIN 329
QYLIN
Sbjct: 340 QYLIN 344
Score = 112 (44.5 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 101 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 154
Score = 112 (44.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 101 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 154
Score = 82 (33.9 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER VT+ GS ++ A LI +
Sbjct: 291 IGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINARL 347
Score = 76 (31.8 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I +
Sbjct: 24 VGSIIGKKGETVKKMREESGARINISEGSCP-----ERIVTITGPTDAIFKAFSMIALKF 78
Query: 333 E 333
E
Sbjct: 79 E 79
Score = 62 (26.9 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 20/75 (26%), Positives = 30/75 (40%)
Query: 515 HLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVN 574
H+G + S L +P R+ SGA + +A+ S ER+V
Sbjct: 270 HIGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN-ATEGSAERQVT 328
Query: 575 IKGVPDAVTQAIYQI 589
I G P ++ A Y I
Sbjct: 329 ITGSPANISLAQYLI 343
Score = 60 (26.2 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 134
G + + +RL++ + RE SGA + ++ P ER V I G
Sbjct: 8 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPT 64
Query: 135 DAVTQAIYQICL 146
DA+ +A I L
Sbjct: 65 DAIFKAFSMIAL 76
Score = 60 (26.2 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 579
G + + +RL++ + RE SGA + ++ P ER V I G
Sbjct: 8 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCP---ERIVTITGPT 64
Query: 580 DAVTQAIYQICL 591
DA+ +A I L
Sbjct: 65 DAIFKAFSMIAL 76
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 424 (154.3 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 87/196 (44%), Positives = 126/196 (64%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G ++F+AFS+I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTTAIFKAFSMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+ +EE + + + + LR++VPASQC RE++GA V VA
Sbjct: 76 IEKLEEDISSSMSNSTATSKPP-VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLI--G 619
DMLPNSTER + I G P ++ + + QIC++M++SPPKG TIPYRP P +G P + G
Sbjct: 135 GDMLPNSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRPKP--SGSPVIFAGG 192
Query: 620 NQFGMQNS-LMGAPDM 634
+ +Q + PD+
Sbjct: 193 QAYAVQGQHAIPQPDL 208
Score = 419 (152.6 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
Identities = 86/192 (44%), Positives = 123/192 (64%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G ++F+AFS+I + +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTTAIFKAFSMIIEKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + + LR++VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMSNSTATSKPP-VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLI--GNQFG 178
PNSTER + I G P ++ + + QIC++M++SPPKG TIPYRP P +G P + G +
Sbjct: 139 PNSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRPKP--SGSPVIFAGGQAYA 196
Query: 179 MQNS-LMGAPDM 189
+Q + PD+
Sbjct: 197 VQGQHAIPQPDL 208
Score = 164 (62.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I +DR +T+TG+P +I+LA
Sbjct: 244 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGS---SDRQVTITGSPASISLA 300
Query: 770 QYLIN 774
+YLIN
Sbjct: 301 EYLIN 305
Score = 164 (62.8 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I +DR +T+TG+P +I+LA
Sbjct: 244 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGS---SDRQVTITGSPASISLA 300
Query: 325 QYLIN 329
+YLIN
Sbjct: 301 EYLIN 305
Score = 96 (38.9 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ GTP +I
Sbjct: 102 IVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGTPLSI 155
Score = 96 (38.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ GTP +I
Sbjct: 102 IVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGTPLSI 155
Score = 79 (32.9 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI +
Sbjct: 252 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPASISLAEYLINARL 308
Score = 65 (27.9 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R IT+ G AI A +M +
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTTAIFKA---FSMII 76
Query: 333 ELLRANLN 340
E L +++
Sbjct: 77 EKLEEDIS 84
Score = 62 (26.9 bits), Expect = 6.7e-44, Sum P(2) = 6.7e-44
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + S++R+V I G P +++ A Y I
Sbjct: 267 RQMSGAQIKIANPV-EGSSDRQVTITGSPASISLAEYLI 304
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 421 (153.3 bits), Expect = 5.2e-55, Sum P(2) = 5.2e-55
Identities = 91/183 (49%), Positives = 117/183 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++REES ++I IS+ S PERI+T+ G+ + +FRAF++I
Sbjct: 29 LRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSCPERIITITGATECVFRAFTMI 88
Query: 502 TKNIEEFHKNQNKHLGGNG---ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
T +EE L NG + LRL++PASQC RE +GA V
Sbjct: 89 TIKLEE----DLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQV 144
Query: 559 YVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLI 618
VA D+LPNSTER V I G DA+ Q + IC ++++SPPKGATIPYRP P G L
Sbjct: 145 QVAGDLLPNSTERGVTISGSQDAIIQCVKLICTVILESPPKGATIPYRPSPA-PGAVLLA 203
Query: 619 GNQ 621
GNQ
Sbjct: 204 GNQ 206
Score = 415 (151.1 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
Identities = 90/179 (50%), Positives = 114/179 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++REES ++I IS+ S PERI+T+ G+ + +FRAF++IT +
Sbjct: 33 MHGKEVGSIIGKKGETVKRIREESSARINISEGSCPERIITITGATECVFRAFTMITIKL 92
Query: 61 EEFHKNQNKHLGGNG---ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
EE L NG + LRL++PASQC RE +GA V VA
Sbjct: 93 EE----DLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAG 148
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 176
D+LPNSTER V I G DA+ Q + IC ++++SPPKGATIPYRP P G L GNQ
Sbjct: 149 DLLPNSTERGVTISGSQDAIIQCVKLICTVILESPPKGATIPYRPSPA-PGAVLLAGNQ 206
Score = 165 (63.1 bits), Expect = 5.2e-55, Sum P(2) = 5.2e-55
Identities = 34/73 (46%), Positives = 51/73 (69%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +PN+LIG++IG+ GTKI EIR++SGA I+I +DR +T+TG+P +I LA
Sbjct: 283 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDST---SDRHVTITGSPISINLA 339
Query: 770 QYLINMSVELLRA 782
QYLI +E ++
Sbjct: 340 QYLITSCLETAKS 352
Score = 165 (63.1 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
Identities = 34/73 (46%), Positives = 51/73 (69%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ +PN+LIG++IG+ GTKI EIR++SGA I+I +DR +T+TG+P +I LA
Sbjct: 283 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDST---SDRHVTITGSPISINLA 339
Query: 325 QYLINMSVELLRA 337
QYLI +E ++
Sbjct: 340 QYLITSCLETAKS 352
Score = 98 (39.6 bits), Expect = 3.7e-47, Sum P(2) = 3.7e-47
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 431 ANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVI 488
A I+++ ++ +GSIIG+ G + ++R+ SG++I I ST +R VT+
Sbjct: 271 AGIESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTIT 330
Query: 489 GSMDSLFRAFSLITKNIE 506
GS S+ A LIT +E
Sbjct: 331 GSPISINLAQYLITSCLE 348
Score = 97 (39.2 bits), Expect = 5.4e-16, Sum P(3) = 5.4e-16
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ +P G++IGKGG+KI EIR+ +GA +++ +R +T++G+ DAI
Sbjct: 115 LVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNST--ERGVTISGSQDAIIQCV 172
Query: 326 YLI 328
LI
Sbjct: 173 KLI 175
Score = 97 (39.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+ +P G++IGKGG+KI EIR+ +GA +++ +R +T++G+ DAI
Sbjct: 115 LVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNST--ERGVTISGSQDAIIQCV 172
Query: 771 YLI 773
LI
Sbjct: 173 KLI 175
Score = 69 (29.3 bits), Expect = 4.1e-44, Sum P(2) = 4.1e-44
Identities = 22/89 (24%), Positives = 37/89 (41%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 576
G SQ L++P R+ SGA + + S L ++++R V I
Sbjct: 272 GIESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQ-LDSTSDRHVTIT 330
Query: 577 GVPDAVTQAIYQI--CLIMVDSPPKGATI 603
G P ++ A Y I CL S + +++
Sbjct: 331 GSPISINLAQYLITSCLETAKSTAQSSSM 359
Score = 68 (29.0 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + IR+ S A I I +R IT+TG + + A +I + +
Sbjct: 38 VGSIIGKKGETVKRIREESSARINISEGSCP-----ERIITITGATECVFRAFTMITIKL 92
Query: 333 E 333
E
Sbjct: 93 E 93
Score = 56 (24.8 bits), Expect = 5.4e-16, Sum P(3) = 5.4e-16
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 66 NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE 125
N + G G + + LRL++ + RE S A + ++ P E
Sbjct: 13 NCEQDFGDGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSCP---E 69
Query: 126 REVNIKGVPDAVTQAIYQICL 146
R + I G + V +A I +
Sbjct: 70 RIITITGATECVFRAFTMITI 90
Score = 56 (24.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 511 NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE 570
N + G G + + LRL++ + RE S A + ++ P E
Sbjct: 13 NCEQDFGDGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSCP---E 69
Query: 571 REVNIKGVPDAVTQAIYQICL 591
R + I G + V +A I +
Sbjct: 70 RIITITGATECVFRAFTMITI 90
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 410 (149.4 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 84/168 (50%), Positives = 109/168 (64%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK G RE+SG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 AYKFEEDITNSMSNSTATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 135 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 405 (147.6 bits), Expect = 7.2e-54, Sum P(2) = 7.2e-54
Identities = 83/164 (50%), Positives = 106/164 (64%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK G RE+SG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 20 MHGKEVGSIIGKMGCLHVVTREQSGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDITNSMSNSTATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
PNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 139 PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Score = 174 (66.3 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 250 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 306
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 307 RQITITGTPANISLAQYLIN 326
Score = 174 (66.3 bits), Expect = 7.2e-54, Sum P(2) = 7.2e-54
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 250 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 306
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 307 RQITITGTPANISLAQYLIN 326
Score = 112 (44.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 112 (44.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI
Sbjct: 102 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAI 155
Score = 77 (32.2 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 273 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 329
Score = 61 (26.5 bits), Expect = 5.4e-42, Sum P(2) = 5.4e-42
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 288 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 325
Score = 61 (26.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G R+ SGA I I +R +T+TG DAI A +I
Sbjct: 25 VGSIIGKMGCLHVVTREQSGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 79
Query: 333 E 333
E
Sbjct: 80 E 80
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 420 (152.9 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 81/171 (47%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 415 (151.1 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 80/167 (47%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 160 (61.4 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 229 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 285
Query: 755 RTITMTGTPDAIALAQYLINM 775
R +T+TG+ +I+LAQYLIN+
Sbjct: 286 RQVTITGSAASISLAQYLINV 306
Score = 160 (61.4 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 229 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 285
Query: 310 RTITMTGTPDAIALAQYLINM 330
R +T+TG+ +I+LAQYLIN+
Sbjct: 286 RQVTITGSAASISLAQYLINV 306
Score = 95 (38.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 95 (38.5 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 252 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 304
Score = 64 (27.6 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 62 (26.9 bits), Expect = 2.2e-43, Sum P(2) = 2.2e-43
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H N G + +Q L +P R+ SGA + +A+ + S
Sbjct: 225 HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGS 283
Query: 569 TEREVNIKGVPDAVTQAIYQI 589
T+R+V I G +++ A Y I
Sbjct: 284 TDRQVTITGSAASISLAQYLI 304
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 420 (152.9 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 81/171 (47%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 415 (151.1 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 80/167 (47%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 160 (61.4 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 260 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 316
Query: 755 RTITMTGTPDAIALAQYLINM 775
R +T+TG+ +I+LAQYLIN+
Sbjct: 317 RQVTITGSAASISLAQYLINV 337
Score = 160 (61.4 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 260 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 316
Query: 310 RTITMTGTPDAIALAQYLINM 330
R +T+TG+ +I+LAQYLIN+
Sbjct: 317 RQVTITGSAASISLAQYLINV 337
Score = 95 (38.5 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 283 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 335
Score = 64 (27.6 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 62 (26.9 bits), Expect = 2.2e-43, Sum P(2) = 2.2e-43
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H N G + +Q L +P R+ SGA + +A+ + S
Sbjct: 256 HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGS 314
Query: 569 TEREVNIKGVPDAVTQAIYQI 589
T+R+V I G +++ A Y I
Sbjct: 315 TDRQVTITGSAASISLAQYLI 335
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 379 (138.5 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 77/155 (49%), Positives = 103/155 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 24 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 83
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE N + + + LRL+VPASQC RE++GA V VA
Sbjct: 84 AYKFEEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA 142
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS 596
DMLPNSTER V I G PDA+ Q + QIC++M+++
Sbjct: 143 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEA 177
Score = 374 (136.7 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 76/151 (50%), Positives = 100/151 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 28 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 87
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 88 EEDIINSMSNSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 146
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS 151
PNSTER V I G PDA+ Q + QIC++M+++
Sbjct: 147 PNSTERAVTISGTPDAIIQCVKQICVVMLEA 177
Score = 174 (66.3 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 233 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 289
Query: 755 RTITMTGTPDAIALAQYLIN 774
R IT+TGTP I+LAQYLIN
Sbjct: 290 RQITITGTPANISLAQYLIN 309
Score = 174 (66.3 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ GTKI EIR++SGA I+I ++
Sbjct: 233 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS---SE 289
Query: 310 RTITMTGTPDAIALAQYLIN 329
R IT+TGTP I+LAQYLIN
Sbjct: 290 RQITITGTPANISLAQYLIN 309
Score = 114 (45.2 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI Q
Sbjct: 110 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAII--Q 165
Query: 326 YLINMSVELLRA-NLNGE 342
+ + V +L A + G+
Sbjct: 166 CVKQICVVMLEAYTIQGQ 183
Score = 114 (45.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+ VP G++IGKGG+KI EIR+ +GA +++ +R +T++GTPDAI Q
Sbjct: 110 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST--ERAVTISGTPDAII--Q 165
Query: 771 YLINMSVELLRA-NLNGE 787
+ + V +L A + G+
Sbjct: 166 CVKQICVVMLEAYTIQGQ 183
Score = 103 (41.3 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAF 498
+R ++ + GS+IGK G +K++RE +G+++ ++ P ER VT+ G+ D++ +
Sbjct: 108 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCV 167
Query: 499 SLITKNIEEFHKNQNKH 515
I + E + Q ++
Sbjct: 168 KQICVVMLEAYTIQGQY 184
Score = 96 (38.9 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIE 61
+ GS+IGK G +K++RE +G+++ ++ P ER VT+ G+ D++ + I +
Sbjct: 116 QCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVML 175
Query: 62 EFHKNQNKH 70
E + Q ++
Sbjct: 176 EAYTIQGQY 184
Score = 77 (32.2 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++++ + ER +T+ G+ ++ A LI +
Sbjct: 256 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 312
Score = 72 (30.4 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++R+ SGA I I +R +T+TG DAI A +I
Sbjct: 33 VGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTITGPTDAIFKAFAMIAYKF 87
Query: 333 E 333
E
Sbjct: 88 E 88
Score = 61 (26.5 bits), Expect = 6.3e-42, Sum P(3) = 6.3e-42
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ S+ER++ I G P ++ A Y I
Sbjct: 271 RQMSGAQIKIAN-ATEGSSERQITITGTPANISLAQYLI 308
Score = 61 (26.5 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
+F + + G + + +RL++ + RE SGA + ++ P
Sbjct: 4 QFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP 63
Query: 122 NSTEREVNIKGVPDAVTQAIYQI 144
ER V I G DA+ +A I
Sbjct: 64 ---ERIVTITGPTDAIFKAFAMI 83
Score = 61 (26.5 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 566
+F + + G + + +RL++ + RE SGA + ++ P
Sbjct: 4 QFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP 63
Query: 567 NSTEREVNIKGVPDAVTQAIYQI 589
ER V I G DA+ +A I
Sbjct: 64 ---ERIVTITGPTDAIFKAFAMI 83
Score = 50 (22.7 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 627
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 189 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 241
Score = 50 (22.7 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 134 PDAVTQAIYQICLIMVDSPPKGATIPYRP---LPQNAG--GPGLIGNQFGMQNS 182
PD +T+ ++Q+ + PP G T P P LP ++ L+G G+ S
Sbjct: 189 PDQLTK-LHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDAS 241
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 420 (152.9 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 81/171 (47%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 415 (151.1 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 80/167 (47%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 159 (61.0 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 257 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 313
Query: 770 QYLINM 775
QYLIN+
Sbjct: 314 QYLINV 319
Score = 159 (61.0 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 257 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 313
Query: 325 QYLINM 330
QYLIN+
Sbjct: 314 QYLINV 319
Score = 95 (38.5 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 265 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
Score = 64 (27.6 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 58 (25.5 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 280 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 317
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 420 (152.9 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 81/171 (47%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 415 (151.1 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 80/167 (47%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 159 (61.0 bits), Expect = 3.0e-54, Sum P(2) = 3.0e-54
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 288 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 344
Query: 770 QYLINM 775
QYLIN+
Sbjct: 345 QYLINV 350
Score = 159 (61.0 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 288 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 344
Query: 325 QYLINM 330
QYLIN+
Sbjct: 345 QYLINV 350
Score = 95 (38.5 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 296 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348
Score = 64 (27.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 58 (25.5 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 311 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 348
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 416 (151.5 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
Identities = 89/185 (48%), Positives = 118/185 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GGN + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 621
D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQ 197
Query: 622 -FGMQ 625
F +Q
Sbjct: 198 GFSVQ 202
Score = 409 (149.0 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 88/181 (48%), Positives = 115/181 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GGN + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ-FGM 179
PNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ F +
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQGFSV 201
Query: 180 Q 180
Q
Sbjct: 202 Q 202
Score = 164 (62.8 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 770 QYLINMSVELLRANLNGEGG 789
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 164 (62.8 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 325 QYLINMSVELLRANLNGEGG 344
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 108 (43.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 84 (34.6 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT +E
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLE 310
Score = 66 (28.3 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
Score = 59 (25.8 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----P---PKG 600
R+ SGA + + + + ER V I G P ++ A Y I CL S P P
Sbjct: 268 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTD 326
Query: 601 ATIPYRPLPQNA---GGPGLIGNQFGMQNS 627
P+ P P A PGL+G + + S
Sbjct: 327 LPAPFSP-PLTALPTAPPGLLGTPYAISLS 355
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 414 (150.8 bits), Expect = 5.6e-54, Sum P(2) = 5.6e-54
Identities = 83/166 (50%), Positives = 110/166 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GGN + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP 184
Score = 407 (148.3 bits), Expect = 4.5e-53, Sum P(2) = 4.5e-53
Identities = 82/162 (50%), Positives = 107/162 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GGN + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
PNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP 184
Score = 164 (62.8 bits), Expect = 5.6e-54, Sum P(2) = 5.6e-54
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 770 QYLINMSVELLRANLNGEGG 789
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 164 (62.8 bits), Expect = 4.5e-53, Sum P(2) = 4.5e-53
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 325 QYLINMSVELLRANLNGEGG 344
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 108 (43.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 84 (34.6 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT +E
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLE 310
Score = 66 (28.3 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
Score = 59 (25.8 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----P---PKG 600
R+ SGA + + + + ER V I G P ++ A Y I CL S P P
Sbjct: 268 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTD 326
Query: 601 ATIPYRPLPQNA---GGPGLIGNQFGMQNS 627
P+ P P A PGL+G + + S
Sbjct: 327 LPAPFSP-PLTALPTAPPGLLGTPYAISLS 355
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 416 (151.5 bits), Expect = 6.5e-54, Sum P(2) = 6.5e-54
Identities = 89/185 (48%), Positives = 118/185 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GGN + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 621
D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQ 197
Query: 622 -FGMQ 625
F +Q
Sbjct: 198 GFSVQ 202
Score = 409 (149.0 bits), Expect = 5.1e-53, Sum P(2) = 5.1e-53
Identities = 88/181 (48%), Positives = 115/181 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GGN + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ-FGM 179
PNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ F +
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQGFSV 201
Query: 180 Q 180
Q
Sbjct: 202 Q 202
Score = 161 (61.7 bits), Expect = 6.5e-54, Sum P(2) = 6.5e-54
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 770 QYLINMSVELLRANLNG 786
QYLI +E ++ G
Sbjct: 302 QYLITACLETAKSTSGG 318
Score = 161 (61.7 bits), Expect = 5.1e-53, Sum P(2) = 5.1e-53
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 325 QYLINMSVELLRANLNG 341
QYLI +E ++ G
Sbjct: 302 QYLITACLETAKSTSGG 318
Score = 108 (43.1 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 84 (34.6 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT +E
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLE 310
Score = 66 (28.3 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
Score = 60 (26.2 bits), Expect = 2.1e-42, Sum P(2) = 2.1e-42
Identities = 28/98 (28%), Positives = 42/98 (42%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----P---PKG 600
R+ SGA + + + + ER V I G P ++ A Y I CL S P P
Sbjct: 268 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPAD 326
Query: 601 ATIPYRPLPQNA---GGPGLIGNQFGMQ-NSLMGAPDM 634
P+ P P A PGL+G + + ++ +G M
Sbjct: 327 LPAPFSP-PLTALPTAPPGLLGTPYAISLSNFIGLKPM 363
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 414 (150.8 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 83/166 (50%), Positives = 110/166 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GGN + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP 184
Score = 407 (148.3 bits), Expect = 9.3e-53, Sum P(2) = 9.3e-53
Identities = 82/162 (50%), Positives = 107/162 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GGN + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
PNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP 184
Score = 161 (61.7 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 246 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 302
Query: 770 QYLINMSVELLRANLNG 786
QYLI +E ++ G
Sbjct: 303 QYLITACLETAKSTSGG 319
Score = 161 (61.7 bits), Expect = 9.3e-53, Sum P(2) = 9.3e-53
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 246 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 302
Query: 325 QYLINMSVELLRANLNG 341
QYLI +E ++ G
Sbjct: 303 QYLITACLETAKSTSGG 319
Score = 108 (43.1 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 84 (34.6 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT +E
Sbjct: 254 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLE 311
Score = 66 (28.3 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
Score = 59 (25.8 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----PPKGAT- 602
R+ SGA + + + + ER V I G P ++ A Y I CL S P T
Sbjct: 269 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPTD 327
Query: 603 --IPYRPLPQNA---GGPGLIGNQFGMQNS 627
P+ P P A PGL+G + + S
Sbjct: 328 LPAPFSP-PLTALPTAPPGLLGTPYAISLS 356
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 411 (149.7 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 88/185 (47%), Positives = 118/185 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GG+ + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 621
D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQ 197
Query: 622 -FGMQ 625
F +Q
Sbjct: 198 GFSVQ 202
Score = 404 (147.3 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 87/181 (48%), Positives = 115/181 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GG+ + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ-FGM 179
PNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ F +
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQGFSV 201
Query: 180 Q 180
Q
Sbjct: 202 Q 202
Score = 164 (62.8 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 770 QYLINMSVELLRANLNGEGG 789
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 164 (62.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 325 QYLINMSVELLRANLNGEGG 344
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 108 (43.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 84 (34.6 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT +E
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLE 310
Score = 66 (28.3 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
Score = 59 (25.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----P---PKG 600
R+ SGA + + + + ER V I G P ++ A Y I CL S P P
Sbjct: 268 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPAD 326
Query: 601 ATIPYRPLPQNA---GGPGLIGNQFGMQNS 627
P+ P P A PGL+G + + S
Sbjct: 327 LPTPFSP-PLTALPTAPPGLLGTPYAISLS 355
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 411 (149.7 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 88/185 (47%), Positives = 118/185 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GG+ + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 621
D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQ 197
Query: 622 -FGMQ 625
F +Q
Sbjct: 198 GFSVQ 202
Score = 404 (147.3 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 87/181 (48%), Positives = 115/181 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GG+ + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ-FGM 179
PNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ F +
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQGFSV 201
Query: 180 Q 180
Q
Sbjct: 202 Q 202
Score = 164 (62.8 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 770 QYLINMSVELLRANLNGEGG 789
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 164 (62.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 325 QYLINMSVELLRANLNGEGG 344
QYLI +E ++ G G
Sbjct: 302 QYLITACLETAKSTSGGTPG 321
Score = 108 (43.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 84 (34.6 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT +E
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLE 310
Score = 66 (28.3 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
Score = 59 (25.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----P---PKG 600
R+ SGA + + + + ER V I G P ++ A Y I CL S P P
Sbjct: 268 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPAD 326
Query: 601 ATIPYRPLPQNA---GGPGLIGNQFGMQNS 627
P+ P P A PGL+G + + S
Sbjct: 327 LPTPFSP-PLTALPTAPPGLLGTPYAISLS 355
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 416 (151.5 bits), Expect = 5.8e-53, Sum P(2) = 5.8e-53
Identities = 89/185 (48%), Positives = 118/185 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GGN + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 621
D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQ 197
Query: 622 -FGMQ 625
F +Q
Sbjct: 198 GFSVQ 202
Score = 409 (149.0 bits), Expect = 4.5e-52, Sum P(2) = 4.5e-52
Identities = 88/181 (48%), Positives = 115/181 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GGN + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ-FGM 179
PNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P + G L NQ F +
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLSLGTVLLSANQGFSV 201
Query: 180 Q 180
Q
Sbjct: 202 Q 202
Score = 152 (58.6 bits), Expect = 5.8e-53, Sum P(2) = 5.8e-53
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 770 QYLI 773
QYLI
Sbjct: 302 QYLI 305
Score = 152 (58.6 bits), Expect = 4.5e-52, Sum P(2) = 4.5e-52
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 301
Query: 325 QYLI 328
QYLI
Sbjct: 302 QYLI 305
Score = 108 (43.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 81 (33.6 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLIT 502
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLIT 306
Score = 66 (28.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
Score = 49 (22.3 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + + + + ER V I G P ++ A Y I
Sbjct: 268 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLI 305
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 410 (149.4 bits), Expect = 6.3e-53, Sum P(2) = 6.3e-53
Identities = 88/195 (45%), Positives = 123/195 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQN-----A 612
DMLPNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P + A
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFA 194
Query: 613 GGPGLIGNQFGMQNS 627
GG +Q MQ S
Sbjct: 195 GGQLTKLHQLAMQQS 209
Score = 405 (147.6 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 87/191 (45%), Positives = 120/191 (62%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQN-----AGGPG 171
PNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P + AGG
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQL 198
Query: 172 LIGNQFGMQNS 182
+Q MQ S
Sbjct: 199 TKLHQLAMQQS 209
Score = 159 (61.0 bits), Expect = 6.3e-53, Sum P(2) = 6.3e-53
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 247 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 303
Query: 770 QYLINM 775
QYLIN+
Sbjct: 304 QYLINV 309
Score = 159 (61.0 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 247 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 303
Query: 325 QYLINM 330
QYLIN+
Sbjct: 304 QYLINV 309
Score = 95 (38.5 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 95 (38.5 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 7.0e-44, Sum P(2) = 7.0e-44
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 255 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 307
Score = 64 (27.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 58 (25.5 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 270 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 307
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 409 (149.0 bits), Expect = 6.5e-53, Sum P(2) = 6.5e-53
Identities = 80/171 (46%), Positives = 113/171 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG+ I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEVISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M+D P KG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLDPPSKGVTIPYRPKPSSS 185
Score = 404 (147.3 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 79/167 (47%), Positives = 110/167 (65%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG+ I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGAGINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEVISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M+D P KG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLDPPSKGVTIPYRPKPSSS 185
Score = 160 (61.4 bits), Expect = 6.5e-53, Sum P(2) = 6.5e-53
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 226 GFSGSLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 282
Query: 755 RTITMTGTPDAIALAQYLINM 775
R +T+TG+ +I+LAQYLIN+
Sbjct: 283 RQVTITGSAASISLAQYLINV 303
Score = 160 (61.4 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 226 GFSGSLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 282
Query: 310 RTITMTGTPDAIALAQYLINM 330
R +T+TG+ +I+LAQYLIN+
Sbjct: 283 RQVTITGSAASISLAQYLINV 303
Score = 95 (38.5 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 9.2e-44, Sum P(2) = 9.2e-44
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 249 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 301
Score = 63 (27.2 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA-QYLINMS 331
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I+
Sbjct: 25 VGSIIGKKGESVKKMREESGAGINISEGNCP-----ERIITLAGPTNAIFKAFAMIIDKL 79
Query: 332 VELLRANL 339
E++ +++
Sbjct: 80 EEVISSSM 87
Score = 58 (25.5 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 264 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 301
Score = 48 (22.0 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 134
G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 9 GLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGNCP---ERIITLAGPT 65
Query: 135 DAVTQAIYQI 144
+A+ +A I
Sbjct: 66 NAIFKAFAMI 75
Score = 48 (22.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 579
G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 9 GLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGNCP---ERIITLAGPT 65
Query: 580 DAVTQAIYQI 589
+A+ +A I
Sbjct: 66 NAIFKAFAMI 75
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 405 (147.6 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 81/175 (46%), Positives = 116/175 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 400 (145.9 bits), Expect = 8.7e-52, Sum P(2) = 8.7e-52
Identities = 80/171 (46%), Positives = 113/171 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 160 (61.4 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 233 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 289
Query: 755 RTITMTGTPDAIALAQYLINM 775
R +T+TG+ +I+LAQYLIN+
Sbjct: 290 RQVTITGSAASISLAQYLINV 310
Score = 160 (61.4 bits), Expect = 8.7e-52, Sum P(2) = 8.7e-52
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 233 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 289
Query: 310 RTITMTGTPDAIALAQYLINM 330
R +T+TG+ +I+LAQYLIN+
Sbjct: 290 RQVTITGSAASISLAQYLINV 310
Score = 95 (38.5 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 95 (38.5 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 256 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 308
Score = 64 (27.6 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 62 (26.9 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H N G + +Q L +P R+ SGA + +A+ + S
Sbjct: 229 HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGS 287
Query: 569 TEREVNIKGVPDAVTQAIYQI 589
T+R+V I G +++ A Y I
Sbjct: 288 TDRQVTITGSAASISLAQYLI 308
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 405 (147.6 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 81/175 (46%), Positives = 116/175 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 400 (145.9 bits), Expect = 8.7e-52, Sum P(2) = 8.7e-52
Identities = 80/171 (46%), Positives = 113/171 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 160 (61.4 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 264 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 320
Query: 755 RTITMTGTPDAIALAQYLINM 775
R +T+TG+ +I+LAQYLIN+
Sbjct: 321 RQVTITGSAASISLAQYLINV 341
Score = 160 (61.4 bits), Expect = 8.7e-52, Sum P(2) = 8.7e-52
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 264 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 320
Query: 310 RTITMTGTPDAIALAQYLINM 330
R +T+TG+ +I+LAQYLIN+
Sbjct: 321 RQVTITGSAASISLAQYLINV 341
Score = 95 (38.5 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 287 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 339
Score = 64 (27.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 62 (26.9 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H N G + +Q L +P R+ SGA + +A+ + S
Sbjct: 260 HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGS 318
Query: 569 TEREVNIKGVPDAVTQAIYQI 589
T+R+V I G +++ A Y I
Sbjct: 319 TDRQVTITGSAASISLAQYLI 339
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 405 (147.6 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 81/175 (46%), Positives = 116/175 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 400 (145.9 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 80/171 (46%), Positives = 113/171 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 159 (61.0 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 347
Query: 770 QYLINM 775
QYLIN+
Sbjct: 348 QYLINV 353
Score = 159 (61.0 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 347
Query: 325 QYLINM 330
QYLIN+
Sbjct: 348 QYLINV 353
Score = 95 (38.5 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 299 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
Score = 64 (27.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 58 (25.5 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 314 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 351
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 405 (147.6 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 81/175 (46%), Positives = 116/175 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 400 (145.9 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 80/171 (46%), Positives = 113/171 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 189
Score = 159 (61.0 bits), Expect = 2.7e-52, Sum P(2) = 2.7e-52
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 347
Query: 770 QYLINM 775
QYLIN+
Sbjct: 348 QYLINV 353
Score = 159 (61.0 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 347
Query: 325 QYLINM 330
QYLIN+
Sbjct: 348 QYLINV 353
Score = 95 (38.5 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 79 (32.9 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 299 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
Score = 64 (27.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
Score = 58 (25.5 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 314 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 351
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 400 (145.9 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 86/189 (45%), Positives = 119/189 (62%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +EE
Sbjct: 3 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 62
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 122
+ + + LRL+VPASQC RE++GA V VA DMLPN
Sbjct: 63 DISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 121
Query: 123 STEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQN-----AGGPGLI 173
STER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P + AGG
Sbjct: 122 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQLTK 181
Query: 174 GNQFGMQNS 182
+Q MQ S
Sbjct: 182 LHQLAMQQS 190
Score = 400 (145.9 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 86/189 (45%), Positives = 119/189 (62%)
Query: 448 GKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 507
GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +EE
Sbjct: 3 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 62
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
+ + + LRL+VPASQC RE++GA V VA DMLPN
Sbjct: 63 DISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 121
Query: 568 STEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQN-----AGGPGLI 618
STER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P + AGG
Sbjct: 122 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQLTK 181
Query: 619 GNQFGMQNS 627
+Q MQ S
Sbjct: 182 LHQLAMQQS 190
Score = 159 (61.0 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 227 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 283
Query: 325 QYLINM 330
QYLIN+
Sbjct: 284 QYLINV 289
Score = 159 (61.0 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 227 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 283
Query: 770 QYLINM 775
QYLIN+
Sbjct: 284 QYLINV 289
Score = 95 (38.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 83 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 136
Score = 95 (38.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 83 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 136
Score = 91 (37.1 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAF 498
+R ++ + GS+IGK G +K++RE +G+++ ++ P ER +T+ G S+
Sbjct: 81 LRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECV 140
Query: 499 SLI 501
I
Sbjct: 141 KQI 143
Score = 79 (32.9 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 235 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 287
Score = 64 (27.6 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 6 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 56
Score = 58 (25.5 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 250 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 287
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 392 (143.0 bits), Expect = 3.1e-49, Sum P(2) = 3.1e-49
Identities = 91/217 (41%), Positives = 132/217 (60%)
Query: 431 ANIQTTG--VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI 488
A + +G V +R +M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLT 62
Query: 489 GSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
G +++F+AF++I +EE N + + LRL+VPA+QC
Sbjct: 63 GPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIK 121
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TI 603
RE++GA V VA DMLPNSTER + I GVP +VT+ + QICL+M+++ P+G TI
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Query: 604 PYRPLPQN-----AGGPGLIGNQFGMQNS---LMGAP 632
PY+P+P + AGG G+ G ++ L G P
Sbjct: 182 PYQPMPASSPVICAGGQDRCGDAAGYPHATHDLEGPP 218
Score = 386 (140.9 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
Identities = 87/200 (43%), Positives = 124/200 (62%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPA+QC RE++GA V VA DML
Sbjct: 80 EE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TIPYRPLPQN-----AGGP 170
PNSTER + I GVP +VT+ + QICL+M+++ P+G TIPY+P+P + AGG
Sbjct: 139 PNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQ 198
Query: 171 GLIGNQFGMQNS---LMGAP 187
G+ G ++ L G P
Sbjct: 199 DRCGDAAGYPHATHDLEGPP 218
Score = 145 (56.1 bits), Expect = 3.1e-49, Sum P(2) = 3.1e-49
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 770 QYLIN 774
QYLIN
Sbjct: 340 QYLIN 344
Score = 145 (56.1 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 325 QYLIN 329
QYLIN
Sbjct: 340 QYLIN 344
Score = 94 (38.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 94 (38.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 77 (32.2 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++ + R VT+ GS S+ A LI +
Sbjct: 291 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 347
Score = 73 (30.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + IR+ SGA I I +R IT+TG +AI A +I +
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEGNCP-----ERIITLTGPTNAIFKAFAMI---I 76
Query: 333 ELLRANLN 340
+ L ++N
Sbjct: 77 DKLEEDIN 84
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 74 NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGV 133
+G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGP 64
Query: 134 PDAVTQAIYQI 144
+A+ +A I
Sbjct: 65 TNAIFKAFAMI 75
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 388 (141.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 83/189 (43%), Positives = 122/189 (64%)
Query: 431 ANIQTTG--VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI 488
A + +G V +R +M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLT 62
Query: 489 GSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
G +++F+AF++I +EE N + + LRL+VPA+QC
Sbjct: 63 GPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIK 121
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TI 603
RE++GA V VA DMLPNSTER + I GVP +VT+ + QICL+M+++ P+G TI
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Query: 604 PYRPLPQNA 612
PY+P+P ++
Sbjct: 182 PYQPMPASS 190
Score = 382 (139.5 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPA+QC RE++GA V VA DML
Sbjct: 80 EE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TIPYRPLPQNA 167
PNSTER + I GVP +VT+ + QICL+M+++ P+G TIPY+P+P ++
Sbjct: 139 PNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190
Score = 145 (56.1 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 770 QYLIN 774
QYLIN
Sbjct: 340 QYLIN 344
Score = 145 (56.1 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 325 QYLIN 329
QYLIN
Sbjct: 340 QYLIN 344
Score = 94 (38.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 94 (38.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 77 (32.2 bits), Expect = 6.8e-41, Sum P(2) = 6.8e-41
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++ + R VT+ GS S+ A LI +
Sbjct: 291 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 347
Score = 73 (30.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + IR+ SGA I I +R IT+TG +AI A +I +
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEGNCP-----ERIITLTGPTNAIFKAFAMI---I 76
Query: 333 ELLRANLN 340
+ L ++N
Sbjct: 77 DKLEEDIN 84
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 74 NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGV 133
+G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGP 64
Query: 134 PDAVTQAIYQI 144
+A+ +A I
Sbjct: 65 TNAIFKAFAMI 75
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 388 (141.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 83/189 (43%), Positives = 122/189 (64%)
Query: 431 ANIQTTG--VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI 488
A + +G V +R +M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLT 62
Query: 489 GSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
G +++F+AF++I +EE N + + LRL+VPA+QC
Sbjct: 63 GPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIK 121
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TI 603
RE++GA V VA DMLPNSTER + I GVP +VT+ + QICL+M+++ P+G TI
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Query: 604 PYRPLPQNA 612
PY+P+P ++
Sbjct: 182 PYQPMPASS 190
Score = 382 (139.5 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPA+QC RE++GA V VA DML
Sbjct: 80 EE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TIPYRPLPQNA 167
PNSTER + I GVP +VT+ + QICL+M+++ P+G TIPY+P+P ++
Sbjct: 139 PNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190
Score = 145 (56.1 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 770 QYLIN 774
QYLIN
Sbjct: 340 QYLIN 344
Score = 145 (56.1 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 325 QYLIN 329
QYLIN
Sbjct: 340 QYLIN 344
Score = 94 (38.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 94 (38.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 77 (32.2 bits), Expect = 6.8e-41, Sum P(2) = 6.8e-41
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++ + R VT+ GS S+ A LI +
Sbjct: 291 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 347
Score = 73 (30.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + IR+ SGA I I +R IT+TG +AI A +I +
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEGNCP-----ERIITLTGPTNAIFKAFAMI---I 76
Query: 333 ELLRANLN 340
+ L ++N
Sbjct: 77 DKLEEDIN 84
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 74 NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGV 133
+G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGP 64
Query: 134 PDAVTQAIYQI 144
+A+ +A I
Sbjct: 65 TNAIFKAFAMI 75
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 388 (141.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 83/189 (43%), Positives = 122/189 (64%)
Query: 431 ANIQTTG--VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI 488
A + +G V +R +M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLT 62
Query: 489 GSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
G +++F+AF++I +EE N + + LRL+VPA+QC
Sbjct: 63 GPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIK 121
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TI 603
RE++GA V VA DMLPNSTER + I GVP +VT+ + QICL+M+++ P+G TI
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Query: 604 PYRPLPQNA 612
PY+P+P ++
Sbjct: 182 PYQPMPASS 190
Score = 382 (139.5 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPA+QC RE++GA V VA DML
Sbjct: 80 EE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TIPYRPLPQNA 167
PNSTER + I GVP +VT+ + QICL+M+++ P+G TIPY+P+P ++
Sbjct: 139 PNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190
Score = 145 (56.1 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 770 QYLIN 774
QYLIN
Sbjct: 340 QYLIN 344
Score = 145 (56.1 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 325 QYLIN 329
QYLIN
Sbjct: 340 QYLIN 344
Score = 94 (38.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 94 (38.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 77 (32.2 bits), Expect = 6.8e-41, Sum P(2) = 6.8e-41
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++ + R VT+ GS S+ A LI +
Sbjct: 291 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 347
Score = 73 (30.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + IR+ SGA I I +R IT+TG +AI A +I +
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEGNCP-----ERIITLTGPTNAIFKAFAMI---I 76
Query: 333 ELLRANLN 340
+ L ++N
Sbjct: 77 DKLEEDIN 84
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 74 NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGV 133
+G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGP 64
Query: 134 PDAVTQAIYQI 144
+A+ +A I
Sbjct: 65 TNAIFKAFAMI 75
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 388 (141.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 83/189 (43%), Positives = 122/189 (64%)
Query: 431 ANIQTTG--VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI 488
A + +G V +R +M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLT 62
Query: 489 GSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
G +++F+AF++I +EE N + + LRL+VPA+QC
Sbjct: 63 GPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIK 121
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TI 603
RE++GA V VA DMLPNSTER + I GVP +VT+ + QICL+M+++ P+G TI
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Query: 604 PYRPLPQNA 612
PY+P+P ++
Sbjct: 182 PYQPMPASS 190
Score = 382 (139.5 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPA+QC RE++GA V VA DML
Sbjct: 80 EE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TIPYRPLPQNA 167
PNSTER + I GVP +VT+ + QICL+M+++ P+G TIPY+P+P ++
Sbjct: 139 PNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190
Score = 145 (56.1 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 770 QYLIN 774
QYLIN
Sbjct: 340 QYLIN 344
Score = 145 (56.1 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 325 QYLIN 329
QYLIN
Sbjct: 340 QYLIN 344
Score = 94 (38.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 94 (38.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 77 (32.2 bits), Expect = 6.8e-41, Sum P(2) = 6.8e-41
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++ + R VT+ GS S+ A LI +
Sbjct: 291 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 347
Score = 73 (30.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + IR+ SGA I I +R IT+TG +AI A +I +
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEGNCP-----ERIITLTGPTNAIFKAFAMI---I 76
Query: 333 ELLRANLN 340
+ L ++N
Sbjct: 77 DKLEEDIN 84
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 74 NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGV 133
+G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGP 64
Query: 134 PDAVTQAIYQI 144
+A+ +A I
Sbjct: 65 TNAIFKAFAMI 75
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 388 (141.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 83/189 (43%), Positives = 122/189 (64%)
Query: 431 ANIQTTG--VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI 488
A + +G V +R +M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLT 62
Query: 489 GSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
G +++F+AF++I +EE N + + LRL+VPA+QC
Sbjct: 63 GPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIK 121
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TI 603
RE++GA V VA DMLPNSTER + I GVP +VT+ + QICL+M+++ P+G TI
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Query: 604 PYRPLPQNA 612
PY+P+P ++
Sbjct: 182 PYQPMPASS 190
Score = 382 (139.5 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VK++REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE N + + LRL+VPA+QC RE++GA V VA DML
Sbjct: 80 EE-DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGA--TIPYRPLPQNA 167
PNSTER + I GVP +VT+ + QICL+M+++ P+G TIPY+P+P ++
Sbjct: 139 PNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190
Score = 145 (56.1 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 770 QYLIN 774
QYLIN
Sbjct: 340 QYLIN 344
Score = 145 (56.1 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN LIG +IG+ G I EIR++SGA I+I + R +T+TG+ +I+LA
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS---SGRQVTITGSAASISLA 339
Query: 325 QYLIN 329
QYLIN
Sbjct: 340 QYLIN 344
Score = 94 (38.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 94 (38.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P ++
Sbjct: 102 LVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGVPQSV 155
Score = 77 (32.2 bits), Expect = 6.8e-41, Sum P(2) = 6.8e-41
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I I++ + R VT+ GS S+ A LI +
Sbjct: 291 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 347
Score = 73 (30.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + IR+ SGA I I +R IT+TG +AI A +I +
Sbjct: 25 VGSIIGKKGESVKRIREESGARINISEGNCP-----ERIITLTGPTNAIFKAFAMI---I 76
Query: 333 ELLRANLN 340
+ L ++N
Sbjct: 77 DKLEEDIN 84
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 74 NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGV 133
+G + + +RL++ + RE SGA + ++ P ER + + G
Sbjct: 8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP---ERIITLTGP 64
Query: 134 PDAVTQAIYQI 144
+A+ +A I
Sbjct: 65 TNAIFKAFAMI 75
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 89/174 (51%), Positives = 116/174 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I ISD S+PERIVT+ G+ + +F+AF++I
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSSPERIVTITGASEVIFKAFAMI 78
Query: 502 TKNIEEFHKNQNKHLGGNGESQL-IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+ EE + S+ + LRL+ PASQC RE++GA V V
Sbjct: 79 AEKFEE--DILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQV 136
Query: 561 ASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGG 614
A D+LP+STER V I G P A+TQ + IC +M++SPPKGATIPYRP P GG
Sbjct: 137 AGDLLPDSTERAVTISGTPHAITQCVKHICTVMLESPPKGATIPYRPKPSAGGG 190
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 88/170 (51%), Positives = 113/170 (66%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I ISD S+PERIVT+ G+ + +F+AF++I +
Sbjct: 23 MHGKEVGSIIGKKGETVKKMREESGARINISDGSSPERIVTITGASEVIFKAFAMIAEKF 82
Query: 61 EEFHKNQNKHLGGNGESQL-IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDM 119
EE + S+ + LRL+ PASQC RE++GA V VA D+
Sbjct: 83 EE--DILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDL 140
Query: 120 LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGG 169
LP+STER V I G P A+TQ + IC +M++SPPKGATIPYRP P GG
Sbjct: 141 LPDSTERAVTISGTPHAITQCVKHICTVMLESPPKGATIPYRPKPSAGGG 190
Score = 100 (40.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ P G++IGKGG+KI EIR+ +GA +++ +R +T++GTP AI
Sbjct: 105 LVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDST--ERAVTISGTPHAI 158
Score = 70 (29.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--ALAQYLINM 330
+G++IGK G + ++R+ SGA I I +R +T+TG + I A A
Sbjct: 28 VGSIIGKKGETVKKMREESGARINISDGSSP-----ERIVTITGASEVIFKAFAMIAEKF 82
Query: 331 SVELLRANLN 340
++L + +N
Sbjct: 83 EEDILASMIN 92
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 321 (118.1 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 72/173 (41%), Positives = 106/173 (61%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +MQGKEVGSIIGK GE+VKK REESG+ + IS+ + PERI+T+ G ++ F+AF++I
Sbjct: 28 IRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEGNCPERIITLAGPTNATFKAFAMI 86
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE S+ + RL+VP SQC ET+G V VA
Sbjct: 87 --KLEE--DRSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTGP-VQVA 141
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSP--PKGATIPYRPLPQNA 612
DMLPNS+E+ + I +P ++ + + QI ++M+++ PKG TIPY P P ++
Sbjct: 142 GDMLPNSSEQAIPIASIPQSIIECVNQIGVVMLETQHSPKGVTIPYLPKPSSS 194
Score = 316 (116.3 bits), Expect = 7.0e-40, Sum P(2) = 7.0e-40
Identities = 71/169 (42%), Positives = 103/169 (60%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
MQGKEVGSIIGK GE+VKK REESG+ + IS+ + PERI+T+ G ++ F+AF++I +
Sbjct: 32 MQGKEVGSIIGKKGESVKK-REESGAHLNISEGNCPERIITLAGPTNATFKAFAMI--KL 88
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE S+ + RL+VP SQC ET+G V VA DML
Sbjct: 89 EE--DRSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTGP-VQVAGDML 145
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSP--PKGATIPYRPLPQNA 167
PNS+E+ + I +P ++ + + QI ++M+++ PKG TIPY P P ++
Sbjct: 146 PNSSEQAIPIASIPQSIIECVNQIGVVMLETQHSPKGVTIPYLPKPSSS 194
Score = 139 (54.0 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T PN+LIG +IG+ G KI EI ++SGA I+I DR +T+TG +I+LA
Sbjct: 286 ELT-PNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEGST----DRQVTITGPAASISLA 340
Query: 770 QYLINM 775
QYLIN+
Sbjct: 341 QYLINV 346
Score = 139 (54.0 bits), Expect = 7.0e-40, Sum P(2) = 7.0e-40
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T PN+LIG +IG+ G KI EI ++SGA I+I DR +T+TG +I+LA
Sbjct: 286 ELT-PNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEGST----DRQVTITGPAASISLA 340
Query: 325 QYLINM 330
QYLIN+
Sbjct: 341 QYLINV 346
Score = 71 (30.1 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD-SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++ + SG++I I++ + +R VT+ G S+ A LI
Sbjct: 293 IGCIIGRQGAKINEIHQMSGAQIKIANPEGSTDRQVTITGPAASISLAQYLI 344
Score = 56 (24.8 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 552 ETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 602
+ SGA + +A+ ST+R+V I G +++ A Y I + + SP G T
Sbjct: 309 QMSGAQIKIANP--EGSTDRQVTITGPAASISLAQYLINVRL--SPETGGT 355
Score = 54 (24.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISG 292
+ VP+ G++IGKG KI E+ + +G
Sbjct: 110 LVVPDSQCGSLIGKGICKIKEVGETTG 136
Score = 53 (23.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + + R+ SGA + I +R IT+ G +A A +I +
Sbjct: 37 VGSIIGKKGESVKK-REESGAHLNISEGNCP-----ERIITLAGPTNATFKAFAMIKLEE 90
Query: 333 ELLRANLN 340
+ R+ N
Sbjct: 91 DRSRSMTN 98
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 420 (152.9 bits), Expect = 2.6e-39, P = 2.6e-39
Identities = 81/171 (47%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 415 (151.1 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 80/167 (47%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 95 (38.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 64 (27.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 420 (152.9 bits), Expect = 2.6e-39, P = 2.6e-39
Identities = 81/171 (47%), Positives = 116/171 (67%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 415 (151.1 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 80/167 (47%), Positives = 113/167 (67%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 185
Score = 95 (38.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 64 (27.6 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 384 (140.2 bits), Expect = 3.9e-35, P = 3.9e-35
Identities = 82/169 (48%), Positives = 107/169 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 46 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 105
Query: 502 TKNIEEFHKNQNK-HLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
EE + + N Q R+I + ++GA V V
Sbjct: 106 AYKFEEVSRVSGLCEIAENAFGVWTQ-RVITLGVTVGCVLGQGPLCPPGLKGSTGAQVQV 164
Query: 561 ASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 609
A DMLPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 165 AGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 213
Score = 379 (138.5 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 81/165 (49%), Positives = 104/165 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVKK+REESG++I IS+ + PERIVT+ G D++F+AF++I
Sbjct: 50 MHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKF 109
Query: 61 EEFHKNQNK-HLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDM 119
EE + + N Q R+I + ++GA V VA DM
Sbjct: 110 EEVSRVSGLCEIAENAFGVWTQ-RVITLGVTVGCVLGQGPLCPPGLKGSTGAQVQVAGDM 168
Query: 120 LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
LPNSTER V I G PDA+ Q + QIC++M++SPPKGATIPYRP P
Sbjct: 169 LPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 213
Score = 45 (20.9 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 579 PDAVTQAIYQICLIMVDSPPKGATIPYRP 607
PD +T+ ++Q+ + PP G T P P
Sbjct: 237 PDQLTK-LHQLAMQQTPFPPLGQTNPAFP 264
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 308 (113.5 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 73/200 (36%), Positives = 109/200 (54%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSI+GK GE+ +KL EE G+ I I + + ERI+T G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIMGKKGESARKLCEECGTLINILEENCLERIITFAGQRNAIFKAFAMI 75
Query: 502 TKNIE-EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+E + + + S + L L+VP QC RE +GA V V
Sbjct: 76 IDKLEGDLSSSIANSTAASRPS--VNLCLVVPDCQCGSLIGKGGCKIKEIRENTGAQVQV 133
Query: 561 ASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSP---PKGATIPYRPLPQNAGGPGL 617
A MLPNSTE I G+P ++ + + Q C++M++ P PKG TIPY P P +G P +
Sbjct: 134 AGHMLPNSTEWAFTIAGIPQSIIECVKQFCVVMLEIPSLPPKGVTIPYWPQP--SGSPVI 191
Query: 618 I--GNQFGMQNSLMGA-PDM 634
G + +Q PD+
Sbjct: 192 FAGGQSYTIQGQYTTPRPDL 211
Score = 303 (111.7 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 72/196 (36%), Positives = 106/196 (54%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSI+GK GE+ +KL EE G+ I I + + ERI+T G +++F+AF++I +
Sbjct: 20 MHGKEVGSIMGKKGESARKLCEECGTLINILEENCLERIITFAGQRNAIFKAFAMIIDKL 79
Query: 61 E-EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDM 119
E + + + S + L L+VP QC RE +GA V VA M
Sbjct: 80 EGDLSSSIANSTAASRPS--VNLCLVVPDCQCGSLIGKGGCKIKEIRENTGAQVQVAGHM 137
Query: 120 LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSP---PKGATIPYRPLPQNAGGPGLI--G 174
LPNSTE I G+P ++ + + Q C++M++ P PKG TIPY P P +G P + G
Sbjct: 138 LPNSTEWAFTIAGIPQSIIECVKQFCVVMLEIPSLPPKGVTIPYWPQP--SGSPVIFAGG 195
Query: 175 NQFGMQNSLMGA-PDM 189
+ +Q PD+
Sbjct: 196 QSYTIQGQYTTPRPDL 211
Score = 119 (46.9 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+TVPN+LIG +I G +I E+ + GA I+I D +T+TG+ +I+LA
Sbjct: 256 ELTVPNDLIGCIIRHQGAEINEVCQACGAQIKIANPMEGST---DWQVTITGSTASISLA 312
Query: 770 QYLINMSVELLRANLNGEGGGESN 793
QYLI++ L+ E GG N
Sbjct: 313 QYLISV-------RLSSETGGMGN 329
Score = 119 (46.9 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+TVPN+LIG +I G +I E+ + GA I+I D +T+TG+ +I+LA
Sbjct: 256 ELTVPNDLIGCIIRHQGAEINEVCQACGAQIKIANPMEGST---DWQVTITGSTASISLA 312
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
QYLI++ L+ E GG N
Sbjct: 313 QYLISV-------RLSSETGGMGN 329
Score = 82 (33.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
+ VP+ G++IGKGG KI EIR+ +GA +++ + T+ G P +I +
Sbjct: 102 LVVPDCQCGSLIGKGGCKIKEIRENTGAQVQVAGHMLPNST--EWAFTIAGIPQSIIECV 159
Query: 324 AQYLINM 330
Q+ + M
Sbjct: 160 KQFCVVM 166
Score = 41 (19.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G+++GK G ++ + G +I I +R IT G +AI A +I
Sbjct: 25 VGSIMGKKGESARKLCEECGTLINILEENCL-----ERIITFAGQRNAIFKAFAMI 75
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 245 (91.3 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 44/88 (50%), Positives = 60/88 (68%)
Query: 525 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 584
+ LRL+VPASQC RE++GA V VA DMLPNSTER + I G+P ++ +
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 118
Query: 585 AIYQICLIMVDSPPKGATIPYRPLPQNA 612
+ QIC++M++SPPKG TIPYRP P ++
Sbjct: 119 CVKQICVVMLESPPKGVTIPYRPKPSSS 146
Score = 245 (91.3 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 44/88 (50%), Positives = 60/88 (68%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
+ LRL+VPASQC RE++GA V VA DMLPNSTER + I G+P ++ +
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 118
Query: 140 AIYQICLIMVDSPPKGATIPYRPLPQNA 167
+ QIC++M++SPPKG TIPYRP P ++
Sbjct: 119 CVKQICVVMLESPPKGVTIPYRPKPSSS 146
Score = 159 (61.0 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 249 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 305
Query: 770 QYLINM 775
QYLIN+
Sbjct: 306 QYLINV 311
Score = 159 (61.0 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 249 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 305
Query: 325 QYLINM 330
QYLIN+
Sbjct: 306 QYLINV 311
Score = 106 (42.4 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 31/71 (43%), Positives = 38/71 (53%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREE--SGSKIYISDSSTPE---RIVTVIGSMDSLFR 496
+R +M GKEVGSIIGK GE+VKK+REE S S + +S P R+V SL
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIG 75
Query: 497 AFSLITKNIEE 507
K I E
Sbjct: 76 KGGCKIKEIRE 86
Score = 101 (40.6 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 30/67 (44%), Positives = 35/67 (52%)
Query: 1 MQGKEVGSIIGKSGETVKKLREE--SGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSL 55
M GKEVGSIIGK GE+VKK+REE S S + +S P R+V SL
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGC 79
Query: 56 ITKNIEE 62
K I E
Sbjct: 80 KIKEIRE 86
Score = 95 (38.5 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 63 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 116
Score = 91 (37.1 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAF 498
+R ++ + GS+IGK G +K++RE +G+++ ++ P ER +T+ G S+
Sbjct: 61 LRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECV 120
Query: 499 SLI 501
I
Sbjct: 121 KQI 123
Score = 84 (34.6 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLI 56
+ GS+IGK G +K++RE +G+++ ++ P ER +T+ G S+ I
Sbjct: 69 QCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI 123
Score = 79 (32.9 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 257 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 309
Score = 58 (25.5 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 272 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 309
Score = 58 (25.5 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 106 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 272 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 309
Score = 42 (19.8 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 273 IGAVIGKGGTKIFEIRK--ISGAM 294
+G++IGK G + ++R+ IS +M
Sbjct: 25 VGSIIGKKGESVKKMREEDISSSM 48
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 272 (100.8 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 62/161 (38%), Positives = 98/161 (60%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSII KS E+VKKL+E+S ++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 19 IRLLMHGKEVGSIIRKSRESVKKLQEKS-ARINISEGNCPERIITLAGPTNAIFKAFAMI 77
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE + + + +VPASQC RE++GA V A
Sbjct: 78 IDKPEEDISSSMTNSTAASRPPVT----VVPASQCGSLIGKGTIKEI--RESTGAQVQAA 131
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 602
+MLPNSTER + I G+ ++ + + QIC++M+++P +T
Sbjct: 132 GNMLPNSTERAITIAGILPSIIECVKQICVVMLETPSLRST 172
Score = 267 (99.0 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 61/157 (38%), Positives = 95/157 (60%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSII KS E+VKKL+E+S ++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 23 MHGKEVGSIIRKSRESVKKLQEKS-ARINISEGNCPERIITLAGPTNAIFKAFAMIIDKP 81
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + +VPASQC RE++GA V A +ML
Sbjct: 82 EEDISSSMTNSTAASRPPVT----VVPASQCGSLIGKGTIKEI--RESTGAQVQAAGNML 135
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 157
PNSTER + I G+ ++ + + QIC++M+++P +T
Sbjct: 136 PNSTERAITIAGILPSIIECVKQICVVMLETPSLRST 172
Score = 154 (59.3 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+ DR +T+TG +I+LA
Sbjct: 248 ELTLPNDLIGCIIGRQGAKINEIRQMSGAQIK---TANPVEGSTDRQVTITGPAASISLA 304
Query: 770 QYLINMSVELLRANLNGEGGGE 791
QYLIN A L+ E GG+
Sbjct: 305 QYLIN-------ARLSSETGGK 319
Score = 154 (59.3 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+ DR +T+TG +I+LA
Sbjct: 248 ELTLPNDLIGCIIGRQGAKINEIRQMSGAQIK---TANPVEGSTDRQVTITGPAASISLA 304
Query: 325 QYLINMSVELLRANLNGEGGGE 346
QYLIN A L+ E GG+
Sbjct: 305 QYLIN-------ARLSSETGGK 319
Score = 70 (29.7 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIG+ G + ++R+ SG++I ++ + +R VT+ G S+ A LI +
Sbjct: 256 IGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLINARL 312
Score = 61 (26.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGT-PDAIALAQY 326
VP G++IGKG K EIR+ +GA ++ +R IT+ G P I +
Sbjct: 103 VPASQCGSLIGKGTIK--EIRESTGAQVQ--AAGNMLPNSTERAITIAGILPSIIECVKQ 158
Query: 327 LINMSVE 333
+ + +E
Sbjct: 159 ICVVMLE 165
Score = 56 (24.8 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 21/85 (24%), Positives = 34/85 (40%)
Query: 505 IEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDM 564
IE +LG + +Q L +P R+ SGA + A+ +
Sbjct: 225 IESSSPEVKGYLGLDESAQTTSHELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPV 284
Query: 565 LPNSTEREVNIKGVPDAVTQAIYQI 589
ST+R+V I G +++ A Y I
Sbjct: 285 -EGSTDRQVTITGPAASISLAQYLI 308
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 395 (144.1 bits), Expect = 2.2e-36, P = 2.2e-36
Identities = 82/182 (45%), Positives = 115/182 (63%)
Query: 428 PNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTV 487
P + TT + +R +MQGKEVGSIIGK G+ +KK+REESG+KI ISD S PERIVT+
Sbjct: 60 PRETSPSTTSLVLTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTI 119
Query: 488 IGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXX 547
G++ + +AF+++ EE L + I +R+IVPA+QC
Sbjct: 120 TGTLGVIGKAFNMVCNKFEE----DMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKI 175
Query: 548 XXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
RE +GAS+ VAS+MLP+STER V + G DA+ + Q+C I++++PPKG+TI YRP
Sbjct: 176 KDIREATGASIQVASEMLPHSTERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITYRP 235
Query: 608 LP 609
P
Sbjct: 236 KP 237
Score = 381 (139.2 bits), Expect = 8.5e-35, P = 8.5e-35
Identities = 78/164 (47%), Positives = 107/164 (65%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
MQGKEVGSIIGK G+ +KK+REESG+KI ISD S PERIVT+ G++ + +AF+++
Sbjct: 78 MQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGTLGVIGKAFNMVCNKF 137
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE L + I +R+IVPA+QC RE +GAS+ VAS+ML
Sbjct: 138 EE----DMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEML 193
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLP 164
P+STER V + G DA+ + Q+C I++++PPKG+TI YRP P
Sbjct: 194 PHSTERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITYRPKP 237
Score = 103 (41.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
VP G++IGKGG+KI +IR+ +GA I++ +R +T++GT DAI L
Sbjct: 159 VPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHST--ERAVTLSGTADAINL 212
Score = 72 (30.4 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+G++IGK G +I +IR+ SGA I I +R +T+TGT I A
Sbjct: 83 VGSIIGKKGDQIKKIREESGAKINISDGSCP-----ERIVTITGTLGVIGKA 129
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 275 (101.9 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 64/171 (37%), Positives = 102/171 (59%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSII KS E+VKKL+E+ G++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIRKSRESVKKLQEK-GARINISEGNCPERIITLAGPTNAIFKAFAMI 74
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
EE + + + +VPASQC RE++GA V A
Sbjct: 75 IDKPEEDISSSMTNSTAASRPPVT----VVPASQCGSLIGKGKIKEI--RESTGAQVQAA 128
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
+MLPNSTER + I G+ ++ + + QIC++M+++P + Y P P ++
Sbjct: 129 GNMLPNSTERAITIAGILPSIIECVKQICVVMLETPRRA----YWPKPSSS 175
Score = 270 (100.1 bits), Expect = 9.7e-36, Sum P(2) = 9.7e-36
Identities = 63/167 (37%), Positives = 99/167 (59%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSII KS E+VKKL+E+ G++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 20 MHGKEVGSIIRKSRESVKKLQEK-GARINISEGNCPERIITLAGPTNAIFKAFAMIIDKP 78
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + +VPASQC RE++GA V A +ML
Sbjct: 79 EEDISSSMTNSTAASRPPVT----VVPASQCGSLIGKGKIKEI--RESTGAQVQAAGNML 132
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
PNSTER + I G+ ++ + + QIC++M+++P + Y P P ++
Sbjct: 133 PNSTERAITIAGILPSIIECVKQICVVMLETPRRA----YWPKPSSS 175
Score = 148 (57.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 36/84 (42%), Positives = 51/84 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ KI EIR++SGA I+ DR +T+TG +I+LA
Sbjct: 237 ELTLPNDLIGCIIGRQDAKINEIRQMSGAQIK---TANPVEGSTDRQVTITGPAASISLA 293
Query: 770 QYLINMSVELLRANLNGEGGGESN 793
QYLIN A L+ E GG+ +
Sbjct: 294 QYLIN-------ARLSSETGGKGS 310
Score = 148 (57.2 bits), Expect = 9.7e-36, Sum P(2) = 9.7e-36
Identities = 36/84 (42%), Positives = 51/84 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ KI EIR++SGA I+ DR +T+TG +I+LA
Sbjct: 237 ELTLPNDLIGCIIGRQDAKINEIRQMSGAQIK---TANPVEGSTDRQVTITGPAASISLA 293
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
QYLIN A L+ E GG+ +
Sbjct: 294 QYLIN-------ARLSSETGGKGS 310
Score = 66 (28.3 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGT-PDAIALAQY 326
VP G++IGKG KI EIR+ +GA ++ +R IT+ G P I +
Sbjct: 100 VPASQCGSLIGKG--KIKEIRESTGAQVQ--AAGNMLPNSTERAITIAGILPSIIECVKQ 155
Query: 327 LINMSVELLR 336
+ + +E R
Sbjct: 156 ICVVMLETPR 165
Score = 64 (27.6 bits), Expect = 6.1e-27, Sum P(2) = 6.1e-27
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
+G IIG+ + ++R+ SG++I ++ + +R VT+ G S+ A LI +
Sbjct: 245 IGCIIGRQDAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLINARL--- 301
Query: 509 HKNQNKHLGGNGES 522
+ GG G S
Sbjct: 302 ----SSETGGKGSS 311
Score = 56 (24.8 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 21/85 (24%), Positives = 34/85 (40%)
Query: 505 IEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDM 564
IE +LG + +Q L +P R+ SGA + A+ +
Sbjct: 214 IESSSPEVKGYLGLDESAQTTSHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTANPV 273
Query: 565 LPNSTEREVNIKGVPDAVTQAIYQI 589
ST+R+V I G +++ A Y I
Sbjct: 274 -EGSTDRQVTITGPAASISLAQYLI 297
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 196 (74.1 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 107 ETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 166
+T+GA V VA D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P +
Sbjct: 150 QTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLS 208
Query: 167 AGGPGLIGNQ-FGMQ 180
G L NQ F +Q
Sbjct: 209 LGTVLLSANQGFSVQ 223
Score = 196 (74.1 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 552 ETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+T+GA V VA D+LPNSTER V + GVPDA+ + QIC ++++SPPKGATIPY P +
Sbjct: 150 QTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHP-SLS 208
Query: 612 AGGPGLIGNQ-FGMQ 625
G L NQ F +Q
Sbjct: 209 LGTVLLSANQGFSVQ 223
Score = 161 (61.7 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 266 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 322
Query: 325 QYLINMSVELLRANLNG 341
QYLI +E ++ G
Sbjct: 323 QYLITACLETAKSTSGG 339
Score = 161 (61.7 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 266 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 322
Query: 770 QYLINMSVELLRANLNG 786
QYLI +E ++ G
Sbjct: 323 QYLITACLETAKSTSGG 339
Score = 128 (50.1 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 32/92 (34%), Positives = 47/92 (51%)
Query: 23 ESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 82
+S ++I IS+ S PERI T+ GS ++F A S+I ++E + GGN + L
Sbjct: 12 QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTL 70
Query: 83 RLIVPASQCXXXXXXXXXXXXXXRETSGASVY 114
RL++PASQC RE G +Y
Sbjct: 71 RLVIPASQCGSLIGKAGTKIKEIREVRG-EIY 101
Score = 128 (50.1 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 32/92 (34%), Positives = 47/92 (51%)
Query: 468 ESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQL 527
+S ++I IS+ S PERI T+ GS ++F A S+I ++E + GGN + L
Sbjct: 12 QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTL 70
Query: 528 RLIVPASQCXXXXXXXXXXXXXXRETSGASVY 559
RL++PASQC RE G +Y
Sbjct: 71 RLVIPASQCGSLIGKAGTKIKEIREVRG-EIY 101
Score = 84 (34.6 bits), Expect = 6.4e-26, Sum P(3) = 6.4e-26
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
+G +IG+ G + ++R+ SG+ I I + + ER VT+ GS S+ A LIT +E
Sbjct: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLE 331
Score = 70 (29.7 bits), Expect = 6.9e-28, Sum P(3) = 6.9e-28
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISG 292
+ +P G++IGK GTKI EIR++ G
Sbjct: 72 LVIPASQCGSLIGKAGTKIKEIREVRG 98
Score = 68 (29.0 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIY 474
N N+ V R+ ++ + GS+IGK+G +K++RE G +IY
Sbjct: 59 NGGNVSRPPVTLRL--VIPASQCGSLIGKAGTKIKEIREVRG-EIY 101
Score = 60 (26.2 bits), Expect = 7.5e-27, Sum P(3) = 7.5e-27
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIY 29
+ GS+IGK+G +K++RE G +IY
Sbjct: 78 QCGSLIGKAGTKIKEIREVRG-EIY 101
Score = 60 (26.2 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 28/98 (28%), Positives = 42/98 (42%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----P---PKG 600
R+ SGA + + + + ER V I G P ++ A Y I CL S P P
Sbjct: 289 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPAD 347
Query: 601 ATIPYRPLPQNA---GGPGLIGNQFGMQ-NSLMGAPDM 634
P+ P P A PGL+G + + ++ +G M
Sbjct: 348 LPAPFSP-PLTALPTAPPGLLGTPYAISLSNFIGLKPM 384
Score = 60 (26.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/98 (28%), Positives = 42/98 (42%)
Query: 106 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDS-----P---PKG 155
R+ SGA + + + + ER V I G P ++ A Y I CL S P P
Sbjct: 289 RQMSGAHIKIGNQA-EGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPAD 347
Query: 156 ATIPYRPLPQNA---GGPGLIGNQFGMQ-NSLMGAPDM 189
P+ P P A PGL+G + + ++ +G M
Sbjct: 348 LPAPFSP-PLTALPTAPPGLLGTPYAISLSNFIGLKPM 384
Score = 47 (21.6 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 309 DRTITMTGTPDAIAL 323
+R +T++G PDAI L
Sbjct: 168 ERAVTVSGVPDAIIL 182
Score = 47 (21.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 754 DRTITMTGTPDAIAL 768
+R +T++G PDAI L
Sbjct: 168 ERAVTVSGVPDAIIL 182
>UNIPROTKB|D4ACH3 [details] [associations]
symbol:D4ACH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OrthoDB:EOG46WZ8K IPI:IPI00464805 Ensembl:ENSRNOT00000055302
Uniprot:D4ACH3
Length = 282
Score = 364 (133.2 bits), Expect = 6.8e-33, P = 6.8e-33
Identities = 75/174 (43%), Positives = 113/174 (64%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIV--PASQCXXXXXXXX-XXXXXXRETSGASV 558
+EE K +++ +RLI P+ + +++GA V
Sbjct: 76 IDKLEEDKICSLKVRSICYNKKVLTIRLIFFQPSLKANNIIYISGCREKEVILKSTGAQV 135
Query: 559 YVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
VA DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 136 QVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 189
Score = 359 (131.4 bits), Expect = 2.4e-32, P = 2.4e-32
Identities = 74/170 (43%), Positives = 110/170 (64%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIV--PASQCXXXXXXXX-XXXXXXRETSGASVYVAS 117
EE K +++ +RLI P+ + +++GA V VA
Sbjct: 80 EEDKICSLKVRSICYNKKVLTIRLIFFQPSLKANNIIYISGCREKEVILKSTGAQVQVAG 139
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 140 DMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 189
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 230 (86.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 44/92 (47%), Positives = 60/92 (65%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
+ LRL+VPASQC RE++GA V VA DMLPNSTER + I G+P ++ +
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 99
Query: 140 AIYQICLIMVD----SPPKGATIPYRPLPQNA 167
+ QIC++M++ SPPKG TIPYRP P ++
Sbjct: 100 CVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 131
Score = 230 (86.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 44/92 (47%), Positives = 60/92 (65%)
Query: 525 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 584
+ LRL+VPASQC RE++GA V VA DMLPNSTER + I G+P ++ +
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 99
Query: 585 AIYQICLIMVD----SPPKGATIPYRPLPQNA 612
+ QIC++M++ SPPKG TIPYRP P ++
Sbjct: 100 CVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 131
Score = 159 (61.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 234 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 290
Query: 325 QYLINM 330
QYLIN+
Sbjct: 291 QYLINV 296
Score = 159 (61.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 234 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 290
Query: 770 QYLINM 775
QYLIN+
Sbjct: 291 QYLINV 296
Score = 95 (38.5 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 44 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 97
Score = 91 (37.1 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAF 498
+R ++ + GS+IGK G +K++RE +G+++ ++ P ER +T+ G S+
Sbjct: 42 LRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECV 101
Query: 499 SLI 501
I
Sbjct: 102 KQI 104
Score = 84 (34.6 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLI 56
+ GS+IGK G +K++RE +G+++ ++ P ER +T+ G S+ I
Sbjct: 50 QCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI 104
Score = 79 (32.9 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 242 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 294
Score = 58 (25.5 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
R+ SGA + +A+ + ST+R+V I G +++ A Y I
Sbjct: 257 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLI 294
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 351 (128.6 bits), Expect = 1.9e-31, P = 1.9e-31
Identities = 73/173 (42%), Positives = 109/173 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+R+ESG++I IS+ + PERI+T+ G + F++F++I
Sbjct: 6 IRLLMHGKEVGSIIGKDGESVKKMRKESGARISISEGNCPERIITLAGPTN--FKSFAMI 63
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + + + L+VPASQC RE++G V VA
Sbjct: 64 IDKLEEDISSSMTNSTAASRPR-VTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVA 122
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGATIPYRPLPQN 611
DMLPNSTER + I G+P ++ + + QIC++M+ + PKG TIPY P P +
Sbjct: 123 GDMLPNSTERAITIAGIPQSIIECVKQICVVMLKTLSQSPKGVTIPYLPKPSS 175
Score = 346 (126.9 bits), Expect = 6.6e-31, P = 6.6e-31
Identities = 72/169 (42%), Positives = 106/169 (62%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+R+ESG++I IS+ + PERI+T+ G + F++F++I +
Sbjct: 10 MHGKEVGSIIGKDGESVKKMRKESGARISISEGNCPERIITLAGPTN--FKSFAMIIDKL 67
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + + + L+VPASQC RE++G V VA DML
Sbjct: 68 EEDISSSMTNSTAASRPR-VTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDML 126
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDS---PPKGATIPYRPLPQN 166
PNSTER + I G+P ++ + + QIC++M+ + PKG TIPY P P +
Sbjct: 127 PNSTERAITIAGIPQSIIECVKQICVVMLKTLSQSPKGVTIPYLPKPSS 175
Score = 91 (37.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +G +++ +R IT+ G P +I
Sbjct: 90 LVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDMLPNST--ERAITIAGIPQSI 143
Score = 62 (26.9 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
+G++IGK G + ++RK SGA I I +R IT+ G + + A + +
Sbjct: 15 VGSIIGKDGESVKKMRKESGARISISEGNCP-----ERIITLAGPTNFKSFAMIIDKLEE 69
Query: 333 ELLRANLN 340
++ + N
Sbjct: 70 DISSSMTN 77
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 345 (126.5 bits), Expect = 8.6e-31, P = 8.6e-31
Identities = 72/149 (48%), Positives = 95/149 (63%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
++E + GGN + LRL++PASQC RET+GA V VA
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA 138
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQIC 590
D+LPNSTER V + GVPDA+ + QIC
Sbjct: 139 GDLLPNSTERAVTVSGVPDAIILCVRQIC 167
Score = 338 (124.0 bits), Expect = 5.0e-30, P = 5.0e-30
Identities = 71/145 (48%), Positives = 92/145 (63%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
+E + GGN + LRL++PASQC RET+GA V VA D+L
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL 142
Query: 121 PNSTEREVNIKGVPDAVTQAIYQIC 145
PNSTER V + GVPDA+ + QIC
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQIC 167
Score = 108 (43.1 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 108 (43.1 bits), Expect = 0.00077, P = 0.00077
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
+ +P G++IGK GTKI EIR+ +GA +++ +R +T++G PDAI L
Sbjct: 106 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST--ERAVTVSGVPDAIIL 161
Score = 66 (28.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--AL 323
M + + +G++IGK G + IR+ S A I I +R T+TG+ A+ A+
Sbjct: 22 MLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHAV 76
Query: 324 AQYLINMSVELLRANLNG 341
+ + +L A NG
Sbjct: 77 SMIAFKLDEDLCAAPANG 94
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 318 (117.0 bits), Expect = 7.8e-28, P = 7.8e-28
Identities = 65/143 (45%), Positives = 93/143 (65%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE + + + LRL+VPASQC RE++GA V VA
Sbjct: 76 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 134
Query: 562 SDMLPNSTEREVNIKGVPDAVTQ 584
DMLPNSTER + I G+P ++ +
Sbjct: 135 GDMLPNSTERAITIAGIPQSIIE 157
Score = 313 (115.2 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 64/139 (46%), Positives = 90/139 (64%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE + + + LRL+VPASQC RE++GA V VA DML
Sbjct: 80 EEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 121 PNSTEREVNIKGVPDAVTQ 139
PNSTER + I G+P ++ +
Sbjct: 139 PNSTERAITIAGIPQSIIE 157
Score = 95 (38.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ VP G++IGKGG KI EIR+ +GA +++ +R IT+ G P +I
Sbjct: 102 LVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST--ERAITIAGIPQSI 155
Score = 64 (27.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI 328
+G++IGK G + ++R+ SGA I I +R IT+ G +AI A +I
Sbjct: 25 VGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLAGPTNAIFKAFAMI 75
>UNIPROTKB|F8VRH0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022901
Ensembl:ENST00000553064 ArrayExpress:F8VRH0 Bgee:F8VRH0
Uniprot:F8VRH0
Length = 310
Score = 198 (74.8 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 108 TSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 167
++GA V VA DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 1 STGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 60
Score = 198 (74.8 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 553 TSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNA 612
++GA V VA DMLPNSTER + I G+P ++ + + QIC++M++SPPKG TIPYRP P ++
Sbjct: 1 STGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 60
Score = 172 (65.6 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 40/97 (41%), Positives = 61/97 (62%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 132 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 188
Query: 325 QYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSS 361
QYLIN+S+E A + + + D S + + PS+
Sbjct: 189 QYLINVSLE--NAKPSSQAASVTIPDHLSINLSQPST 223
Score = 172 (65.6 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 40/97 (41%), Positives = 61/97 (62%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN+LIG +IG+ G KI EIR++SGA I+I DR +T+TG+ +I+LA
Sbjct: 132 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---DRQVTITGSAASISLA 188
Query: 770 QYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSS 806
QYLIN+S+E A + + + D S + + PS+
Sbjct: 189 QYLINVSLE--NAKPSSQAASVTIPDHLSINLSQPST 223
Score = 88 (36.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 33/119 (27%), Positives = 51/119 (42%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI ++E
Sbjct: 140 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLE-- 197
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
N S I L + SQ T+G S A LPN
Sbjct: 198 ----NAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSTTTPSLATAGTSD--APSSLPN 250
Score = 63 (27.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKG----ATIP 604
R+ SGA + +A+ + ST+R+V I G +++ A Y I + + ++ P TIP
Sbjct: 155 RQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLINVSLENAKPSSQAASVTIP 211
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 301 (111.0 bits), Expect = 5.6e-26, P = 5.6e-26
Identities = 59/140 (42%), Positives = 90/140 (64%)
Query: 11 GKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKH 70
GK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +EE + +
Sbjct: 22 GKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTN 81
Query: 71 LGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNI 130
+ LRL+VPASQC RE++GA V VA DMLPNSTER + I
Sbjct: 82 STAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 140
Query: 131 KGVPDAVTQAIYQICLIMVD 150
G+P ++ + + QIC++M++
Sbjct: 141 AGIPQSIIECVKQICVVMLE 160
Score = 301 (111.0 bits), Expect = 5.6e-26, P = 5.6e-26
Identities = 59/140 (42%), Positives = 90/140 (64%)
Query: 456 GKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKH 515
GK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +EE + +
Sbjct: 22 GKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTN 81
Query: 516 LGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNI 575
+ LRL+VPASQC RE++GA V VA DMLPNSTER + I
Sbjct: 82 STAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 140
Query: 576 KGVPDAVTQAIYQICLIMVD 595
G+P ++ + + QIC++M++
Sbjct: 141 AGIPQSIIECVKQICVVMLE 160
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 229 (85.7 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 58/195 (29%), Positives = 99/195 (50%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFS 499
+R I+ KE G IIGK+G+ V LR+E+G K +S +R++TV G++ RA++
Sbjct: 229 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGALSGTARAYA 288
Query: 500 LITKNIEEFHKNQNKHLGGN-GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
L+ K + E +GG + +RL++ +Q ++ SG +
Sbjct: 289 LVAKGLLEGAPQMG--MGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQDASGVRM 346
Query: 559 YVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPLPQNAGGPGL 617
+MLP STER V ++G P+ + +AI++I ++D +G TI Y P +++ G G
Sbjct: 347 VAQKEMLPQSTERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGTGTILYNPAVRSSVGSGS 406
Query: 618 IGNQFGMQNSLMGAP 632
I + G +S P
Sbjct: 407 IQHNGGNSDSYNSRP 421
Score = 220 (82.5 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 56/191 (29%), Positives = 96/191 (50%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITK 58
+ KE G IIGK+G+ V LR+E+G K +S +R++TV G++ RA++L+ K
Sbjct: 233 VSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGALSGTARAYALVAK 292
Query: 59 NIEEFHKNQNKHLGGN-GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ E +GG + +RL++ +Q ++ SG +
Sbjct: 293 GLLEGAPQMG--MGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQDASGVRMVAQK 350
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPLPQNAGGPGLIGNQ 176
+MLP STER V ++G P+ + +AI++I ++D +G TI Y P +++ G G I +
Sbjct: 351 EMLPQSTERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGTGTILYNPAVRSSVGSGSIQHN 410
Query: 177 FGMQNSLMGAP 187
G +S P
Sbjct: 411 GGNSDSYNSRP 421
Score = 115 (45.5 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+++P +++G +IG+GGTKI EIR+ SGA RI +R T+ G+ A A
Sbjct: 466 ISIPADMVGCIIGRGGTKITEIRRSSGA--RISIAKAPHDETGERMFTIMGSAQANEKAL 523
Query: 771 YLI--NMSVELLR 781
YL+ N+ E R
Sbjct: 524 YLLYENLEAEKTR 536
Score = 115 (45.5 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+++P +++G +IG+GGTKI EIR+ SGA RI +R T+ G+ A A
Sbjct: 466 ISIPADMVGCIIGRGGTKITEIRRSSGA--RISIAKAPHDETGERMFTIMGSAQANEKAL 523
Query: 326 YLI--NMSVELLR 336
YL+ N+ E R
Sbjct: 524 YLLYENLEAEKTR 536
Score = 94 (38.1 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS---STPERIVTVIGSMDSLFRAFSLITKNIE 506
VG IIG+ G + ++R SG++I I+ + T ER+ T++GS + +A L+ +N+E
Sbjct: 473 VGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKALYLLYENLE 531
Score = 68 (29.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ + + +G +IG+ G KI I+ SG +R+ +R + + GTP+ I A
Sbjct: 317 LLISHNQMGTIIGRQGLKIKHIQDASG--VRMVAQKEMLPQSTERIVEVQGTPEGIEKA 373
Score = 65 (27.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
V ++ G +IGK G + ++R +G + +DR +T+TG A A L
Sbjct: 233 VSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGV---HDRVLTVTGALSGTARAYAL 289
Query: 328 INMSVELLRANLNGEGGGESN 348
+ + L A G GG SN
Sbjct: 290 VAKGL-LEGAPQMGMGGIVSN 309
Score = 47 (21.6 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 521 ESQLIQLRLI-VPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 579
+ + IQ + I +PA R +SGA + +A + ER I G
Sbjct: 457 DGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGSA 516
Query: 580 DAVTQAIY 587
A +A+Y
Sbjct: 517 QANEKALY 524
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 200 (75.5 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 101
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G+ +LRL++ S RE + ++ +
Sbjct: 102 IPTLEEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 154
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 155 QECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 200
Score = 194 (73.4 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 47/162 (29%), Positives = 81/162 (50%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 46 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 105
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G+ +LRL++ S RE + ++ + +
Sbjct: 106 EEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 200
Score = 141 (54.7 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 354 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 410
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 411 QYLLQNSVK 419
Score = 141 (54.7 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 354 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 410
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 411 QYLLQNSVK 419
Score = 112 (44.5 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 363 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 421
Score = 76 (31.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + + + +R ++ G IIG G +K+LRE + + I + P
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V + G D + +I I E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLISE 188
Score = 59 (25.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 122 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 175
Score = 49 (22.3 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 52 GAVIGKGGKNIKALRTDYNASVSV 75
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 199 (75.1 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 48/166 (28%), Positives = 83/166 (50%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ +++ I
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADTETIGEILKKI 101
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G+ +LRL++ S RE + ++ +
Sbjct: 102 IPTLEEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 154
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 155 QECCPHSTDRVVLIGGKPDRVVECIKIILDLIFESPIKGRAQPYDP 200
Score = 193 (73.0 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 47/162 (29%), Positives = 80/162 (49%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ +++ I +
Sbjct: 46 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADTETIGEILKKIIPTL 105
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G+ +LRL++ S RE + ++ + +
Sbjct: 106 EEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECIKIILDLIFESPIKGRAQPYDP 200
Score = 141 (54.7 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 411
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 412 QYLLQNSVK 420
Score = 141 (54.7 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 411
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 412 QYLLQNSVK 420
Score = 112 (44.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 364 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 422
Score = 73 (30.8 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + + + +R ++ G IIG G +K+LRE + + I + P
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V + G D + +I I E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLIFE 188
Score = 59 (25.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 122 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 175
Score = 49 (22.3 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 52 GAVIGKGGKNIKALRTDYNASVSV 75
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 198 (74.8 bits), Expect = 7.8e-23, Sum P(2) = 7.8e-23
Identities = 48/166 (28%), Positives = 83/166 (50%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ +++ I
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADTETIGEILKKI 101
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G+ +LRL++ S RE + ++ +
Sbjct: 102 IPTLEEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 154
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 155 QECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 200
Score = 192 (72.6 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 47/162 (29%), Positives = 80/162 (49%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ +++ I +
Sbjct: 46 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADTETIGEILKKIIPTL 105
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G+ +LRL++ S RE + ++ + +
Sbjct: 106 EEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 200
Score = 141 (54.7 bits), Expect = 7.8e-23, Sum P(2) = 7.8e-23
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 411
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 412 QYLLQNSVK 420
Score = 141 (54.7 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 411
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 412 QYLLQNSVK 420
Score = 112 (44.5 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 364 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 422
Score = 76 (31.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + + + +R ++ G IIG G +K+LRE + + I + P
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V + G D + +I I E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLISE 188
Score = 59 (25.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 122 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 175
Score = 49 (22.3 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 52 GAVIGKGGKNIKALRTDYNASVSV 75
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 199 (75.1 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 50/156 (32%), Positives = 80/156 (51%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFS 499
+R ++ +E ++IGK GE V ++R SG+K +SD S ERI+TV G D++ +AF
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 169
Query: 500 LITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVY 559
LI + + N+ +S+ LRL++P ++ SGA +
Sbjct: 170 LIIRTLN----NEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLN 225
Query: 560 VASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 595
+ LP STER + I GV DAV A Y + + +V+
Sbjct: 226 ASDACLPLSTERSLVILGVADAVHIATYYVAVTLVE 261
Score = 192 (72.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 49/152 (32%), Positives = 77/152 (50%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITK 58
+ +E ++IGK GE V ++R SG+K +SD S ERI+TV G D++ +AF LI +
Sbjct: 114 ISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFGLIIR 173
Query: 59 NIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD 118
+ N+ +S+ LRL++P ++ SGA + +
Sbjct: 174 TLN----NEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLNASDA 229
Query: 119 MLPNSTEREVNIKGVPDAVTQAIYQICLIMVD 150
LP STER + I GV DAV A Y + + +V+
Sbjct: 230 CLPLSTERSLVILGVADAVHIATYYVAVTLVE 261
Score = 138 (53.6 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +PN+++GA+IGKGG KI EIR +SG++I+I N+R +T+TGT + +A
Sbjct: 394 QIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENS---NERLVTITGTQECNQMA 450
Query: 770 QYLINMSVE 778
Y++ +E
Sbjct: 451 LYMLYSRLE 459
Score = 138 (53.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +PN+++GA+IGKGG KI EIR +SG++I+I N+R +T+TGT + +A
Sbjct: 394 QIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENS---NERLVTITGTQECNQMA 450
Query: 325 QYLINMSVE 333
Y++ +E
Sbjct: 451 LYMLYSRLE 459
Score = 118 (46.6 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ +P+ LIG++IGKGGT+I EI+ SGA R+ +R++ + G DA+ +A
Sbjct: 195 LLIPHILIGSIIGKGGTRIREIQDASGA--RLNASDACLPLSTERSLVILGVADAVHIAT 252
Query: 326 YLINMS-VELLRANLNG 341
Y + ++ VE L G
Sbjct: 253 YYVAVTLVEQLTERFGG 269
Score = 118 (46.6 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+ +P+ LIG++IGKGGT+I EI+ SGA R+ +R++ + G DA+ +A
Sbjct: 195 LLIPHILIGSIIGKGGTRIREIQDASGA--RLNASDACLPLSTERSLVILGVADAVHIAT 252
Query: 771 YLINMS-VELLRANLNG 786
Y + ++ VE L G
Sbjct: 253 YYVAVTLVEQLTERFGG 269
Score = 90 (36.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIE-E 507
VG+IIGK G + ++R SGS I I++ ++ ER+VT+ G+ + A ++ +E E
Sbjct: 402 VGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMALYMLYSRLESE 461
Query: 508 FHK 510
H+
Sbjct: 462 KHR 464
Score = 83 (34.3 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
+ ++ VIGKGG + +IR++SGA + +R +T++G DA+A A L
Sbjct: 114 ISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAV---ERILTVSGPQDAVAKAFGL 170
Query: 328 I 328
I
Sbjct: 171 I 171
Score = 73 (30.8 bits), Expect = 7.9e-17, Sum P(3) = 7.9e-17
Identities = 30/115 (26%), Positives = 45/115 (39%)
Query: 66 NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE 125
NQ++ ES I +R ++ + + R SGA V SD + E
Sbjct: 94 NQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTV-SDYSRGAVE 152
Query: 126 REVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPLPQNAGGPG-LIGNQFG 178
R + + G DAV +A I + + P A T + P P LIG+ G
Sbjct: 153 RILTVSGPQDAVAKAFGLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIG 207
Score = 73 (30.8 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 30/115 (26%), Positives = 45/115 (39%)
Query: 511 NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE 570
NQ++ ES I +R ++ + + R SGA V SD + E
Sbjct: 94 NQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTV-SDYSRGAVE 152
Query: 571 REVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPLPQNAGGPG-LIGNQFG 623
R + + G DAV +A I + + P A T + P P LIG+ G
Sbjct: 153 RILTVSGPQDAVAKAFGLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIG 207
Score = 54 (24.1 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 18/74 (24%), Positives = 28/74 (37%)
Query: 516 LGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNI 575
+GG Q + ++ +P R SG SV ++ NS ER V I
Sbjct: 382 VGGAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSG-SVIKINEPQENSNERLVTI 440
Query: 576 KGVPDAVTQAIYQI 589
G + A+Y +
Sbjct: 441 TGTQECNQMALYML 454
Score = 43 (20.2 bits), Expect = 8.8e-23, Sum P(3) = 8.8e-23
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 124 TEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQ 180
+E +K A A Q ++ D+P KG +P+ A GNQ Q
Sbjct: 44 SENNAEVKTESGAANDADGQGDTVVPDAP-KGGVSETQPIQSTASHGEAAGNQSEQQ 99
Score = 43 (20.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 569 TEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQ 625
+E +K A A Q ++ D+P KG +P+ A GNQ Q
Sbjct: 44 SENNAEVKTESGAANDADGQGDTVVPDAP-KGGVSETQPIQSTASHGEAAGNQSEQQ 99
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 196 (74.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 46/166 (27%), Positives = 83/166 (50%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +++ K G++IGK G+ +K LR + + + + DSS PERI++V +D++ I
Sbjct: 46 LRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVSADIDTIGEILLKI 105
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G +LRL++ S RE + ++ +
Sbjct: 106 IPTLEEY-----QHYSGTDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 158
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ST+R V + G P+ V + I I ++ ++P KG PY P
Sbjct: 159 QECCPHSTDRVVLVGGKPERVVECIKVILELIAEAPIKGRAQPYDP 204
Score = 190 (71.9 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 45/162 (27%), Positives = 80/162 (49%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
++ K G++IGK G+ +K LR + + + + DSS PERI++V +D++ I +
Sbjct: 50 LRSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVSADIDTIGEILLKIIPTL 109
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G +LRL++ S RE + ++ + +
Sbjct: 110 EEY-----QHYSGTDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 162
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V + G P+ V + I I ++ ++P KG PY P
Sbjct: 163 PHSTDRVVLVGGKPERVVECIKVILELIAEAPIKGRAQPYDP 204
Score = 141 (54.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 359 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 415
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 416 QYLLQNSVK 424
Score = 141 (54.7 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 359 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 415
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 416 QYLLQNSVK 424
Score = 112 (44.5 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 368 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 426
Score = 76 (31.8 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 22/87 (25%), Positives = 38/87 (43%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + T +R ++ G IIG G +K+LRE + + I + P
Sbjct: 106 IPTLEEYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 165
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V V G + + +I + I E
Sbjct: 166 TDRVVLVGGKPERVVECIKVILELIAE 192
Score = 55 (24.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G P+ +
Sbjct: 126 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLVGGKPERV 179
Score = 49 (22.3 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 56 GAVIGKGGKNIKALRTDYNASVSV 79
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 218 (81.8 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 54/196 (27%), Positives = 99/196 (50%)
Query: 439 QRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFR 496
Q +R I+ KE G IIGK G+ V LR+E+G K +S +R++T+ G + + +
Sbjct: 45 QLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEGISK 104
Query: 497 AFSLITKNIEEFHKNQNKHLGGN-GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 555
A++++ + + E + +GG + ++L++ +Q ++ SG
Sbjct: 105 AYAVVARALLEGAPSMG--MGGVVSNNGTHPIKLLISHNQMGTIIGRQGLKIKHIQDVSG 162
Query: 556 ASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPL--PQNA 612
+ +MLP STER V ++G P+ + +A+++IC ++D +G T+ Y P+ Q A
Sbjct: 163 VRMVAQKEMLPQSTERVVEVQGTPEGIQRAVWEICKCLIDDWQRGTGTVLYNPVVRTQPA 222
Query: 613 GGP--GLIGNQFGMQN 626
G G G +G N
Sbjct: 223 GATQMGSSGAGYGTSN 238
Score = 208 (78.3 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 51/189 (26%), Positives = 95/189 (50%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITK 58
+ KE G IIGK G+ V LR+E+G K +S +R++T+ G + + +A++++ +
Sbjct: 52 VSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEGISKAYAVVAR 111
Query: 59 NIEEFHKNQNKHLGGN-GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ E + +GG + ++L++ +Q ++ SG +
Sbjct: 112 ALLEGAPSMG--MGGVVSNNGTHPIKLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQK 169
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPL--PQNAGGP--GL 172
+MLP STER V ++G P+ + +A+++IC ++D +G T+ Y P+ Q AG G
Sbjct: 170 EMLPQSTERVVEVQGTPEGIQRAVWEICKCLIDDWQRGTGTVLYNPVVRTQPAGATQMGS 229
Query: 173 IGNQFGMQN 181
G +G N
Sbjct: 230 SGAGYGTSN 238
Score = 110 (43.8 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
GP +++P +++G +IG+ G+KI EIRK SGA RI +
Sbjct: 276 GPPTHDENGEEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGA--RISIAKAPHDETGE 333
Query: 755 RTITMTGTPDAIALAQYLI--NMSVELLR 781
R T+ G+ A A +L+ N+ E +R
Sbjct: 334 RMFTIMGSAKANETALFLLYENLEAEKMR 362
Score = 110 (43.8 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
GP +++P +++G +IG+ G+KI EIRK SGA RI +
Sbjct: 276 GPPTHDENGEEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGA--RISIAKAPHDETGE 333
Query: 310 RTITMTGTPDAIALAQYLI--NMSVELLR 336
R T+ G+ A A +L+ N+ E +R
Sbjct: 334 RMFTIMGSAKANETALFLLYENLEAEKMR 362
Score = 93 (37.8 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS---STPERIVTVIGSMDSLFRAFSLITKNIE 506
VG IIG++G + ++R+ SG++I I+ + T ER+ T++GS + A L+ +N+E
Sbjct: 299 VGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKANETALFLLYENLE 357
Score = 75 (31.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ + + +G +IG+ G KI I+ +SG +R+ +R + + GTP+ I A
Sbjct: 135 KLLISHNQMGTIIGRQGLKIKHIQDVSG--VRMVAQKEMLPQSTERVVEVQGTPEGIQRA 192
Query: 325 QYLI 328
+ I
Sbjct: 193 VWEI 196
Score = 74 (31.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
V ++ G +IGKGG + ++R +G + +DR +T+TG + I+ A Y
Sbjct: 52 VSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV---HDRVLTITGGCEGISKA-YA 107
Query: 328 INMSVELLRANLNGEGGGESN 348
+ L A G GG SN
Sbjct: 108 VVARALLEGAPSMGMGGVVSN 128
Score = 51 (23.0 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 18/69 (26%), Positives = 26/69 (37%)
Query: 519 NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGV 578
NGE Q + +PA R+TSGA + +A + ER I G
Sbjct: 283 NGEEIQTQ-NISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGS 341
Query: 579 PDAVTQAIY 587
A A++
Sbjct: 342 AKANETALF 350
Score = 39 (18.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 340 NGEGGGESNMDDFSS 354
+G G G SN D+SS
Sbjct: 230 SGAGYGTSNRGDYSS 244
Score = 39 (18.8 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 785 NGEGGGESNMDDFSS 799
+G G G SN D+SS
Sbjct: 230 SGAGYGTSNRGDYSS 244
>UNIPROTKB|E2RCG0 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014980 ProteinModelPortal:E2RCG0 PRIDE:E2RCG0
Ensembl:ENSCAFT00000010995 NextBio:20853046 Uniprot:E2RCG0
Length = 291
Score = 173 (66.0 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 42/112 (37%), Positives = 63/112 (56%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 97 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 153
Query: 310 RTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSS 361
R +T+TG+ +I+LAQYLIN+S+E A + + + D S + + PS+
Sbjct: 154 RQVTITGSAASISLAQYLINVSLE--NAKPSSQAASVTIPDHLSINLSQPST 203
Score = 173 (66.0 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 42/112 (37%), Positives = 63/112 (56%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 97 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 153
Query: 755 RTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSS 806
R +T+TG+ +I+LAQYLIN+S+E A + + + D S + + PS+
Sbjct: 154 RQVTITGSAASISLAQYLINVSLE--NAKPSSQAASVTIPDHLSINLSQPST 203
Score = 154 (59.3 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 119 MLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 167
MLPNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 1 MLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 53
Score = 154 (59.3 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 564 MLPNSTEREVNIKGVPDAVTQAIYQICLIMVD----SPPKGATIPYRPLPQNA 612
MLPNSTER + I G+P ++ + + QIC++M++ SPPKG TIPYRP P ++
Sbjct: 1 MLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSS 53
Score = 85 (35.0 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIE 506
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI ++E
Sbjct: 120 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLE 177
Score = 67 (28.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H N G + +Q L +P R+ SGA + +A+ + S
Sbjct: 93 HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGS 151
Query: 569 TEREVNIKGVPDAVTQAIYQICLIMVDSPPKG----ATIP 604
T+R+V I G +++ A Y I + + ++ P TIP
Sbjct: 152 TDRQVTITGSAASISLAQYLINVSLENAKPSSQAASVTIP 191
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 199 (75.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 48/166 (28%), Positives = 83/166 (50%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ +++ I
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADTETIGEILKKI 101
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G+ +LRL++ S RE + ++ +
Sbjct: 102 IPTLEEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 154
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 155 QECCPHSTDRVVLIGGKPDRVVECIKIILDLIFESPIKGRAQPYDP 200
Score = 193 (73.0 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 47/162 (29%), Positives = 80/162 (49%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ +++ I +
Sbjct: 46 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADTETIGEILKKIIPTL 105
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G+ +LRL++ S RE + ++ + +
Sbjct: 106 EEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 158
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 159 PHSTDRVVLIGGKPDRVVECIKIILDLIFESPIKGRAQPYDP 200
Score = 134 (52.2 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 411
Query: 770 QYLI 773
QYL+
Sbjct: 412 QYLL 415
Score = 134 (52.2 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 411
Query: 325 QYLI 328
QYL+
Sbjct: 412 QYLL 415
Score = 105 (42.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +N +++
Sbjct: 364 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL-QNRQQY 421
Score = 73 (30.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + + + +R ++ G IIG G +K+LRE + + I + P
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V + G D + +I I E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLIFE 188
Score = 59 (25.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 122 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 175
Score = 49 (22.3 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 52 GAVIGKGGKNIKALRTDYNASVSV 75
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 226 (84.6 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I
Sbjct: 13 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 72
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQC 536
+EE + + + LRL+VPASQC
Sbjct: 73 IDKLEEDISSSMTNSTAASRPP-VTLRLVVPASQC 106
Score = 221 (82.9 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 45/91 (49%), Positives = 64/91 (70%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G +++F+AF++I +
Sbjct: 17 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKL 76
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQC 91
EE + + + LRL+VPASQC
Sbjct: 77 EEDISSSMTNSTAASRPP-VTLRLVVPASQC 106
Score = 67 (28.6 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE 482
+R ++ + GS+IGK G +K++RE S S TPE
Sbjct: 97 LRLVVPASQCGSLIGKGGCKIKEIRERRVSLFCSGWSPTPE 137
Score = 63 (27.2 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRK 734
+ VP G++IGKGG KI EIR+
Sbjct: 99 LVVPASQCGSLIGKGGCKIKEIRE 122
Score = 63 (27.2 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRK 289
+ VP G++IGKGG KI EIR+
Sbjct: 99 LVVPASQCGSLIGKGGCKIKEIRE 122
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 186 (70.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 46/166 (27%), Positives = 82/166 (49%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G+ +LRL++ S + ++ +
Sbjct: 105 IPTLEEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLF 157
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 158 QECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 203
Score = 180 (68.4 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 45/162 (27%), Positives = 79/162 (48%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 108
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G+ +LRL++ S + ++ + +
Sbjct: 109 EEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECC 161
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 162 PHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 203
Score = 141 (54.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 423
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 424 QYLLQNSVK 432
Score = 141 (54.7 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 423
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 424 QYLLQNSVK 432
Score = 112 (44.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 376 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 434
Score = 62 (26.9 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 19/87 (21%), Positives = 35/87 (40%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + + + +R ++ G IIG G +KK + + I + P
Sbjct: 105 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECCPHS 164
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V + G D + +I I E
Sbjct: 165 TDRVVLIGGKPDRVVECIKIILDLISE 191
Score = 49 (22.3 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 55 GAVIGKGGKNIKALRTDYNASVSV 78
Score = 48 (22.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISG-AMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI +K G I DR + + G PD +
Sbjct: 125 LLIHQSLAGGIIGVKGAKI---KKFGGNTQTTIKLFQECCPHSTDRVVLIGGKPDRV 178
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 177 (67.4 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 44/166 (26%), Positives = 82/166 (49%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI++V + ++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPDSSGPERILSVSADIPTVAEILLKI 104
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ H G + + +L RL++ S R+++ ++ +
Sbjct: 105 IPTLEEYQH----HKGVDFDCEL---RLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLF 157
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P ST+R V + G + V Q I + ++V++P KG Y P
Sbjct: 158 QECCPQSTDRVVLVGGKAERVVQCIKTMLELIVEAPIKGRAQQYDP 203
Score = 171 (65.3 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 43/162 (26%), Positives = 79/162 (48%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI++V + ++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALRTDYNATVSVPDSSGPERILSVSADIPTVAEILLKIIPTL 108
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ H G + + +L RL++ S R+++ ++ + +
Sbjct: 109 EEYQH----HKGVDFDCEL---RLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECC 161
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P ST+R V + G + V Q I + ++V++P KG Y P
Sbjct: 162 PQSTDRVVLVGGKAERVVQCIKTMLELIVEAPIKGRAQQYDP 203
Score = 141 (54.7 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 357 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGS---EDRIITITGTQDQIQNA 413
Query: 770 QYLI-NMSVELL-RAN 783
QYL+ N ++ LL R N
Sbjct: 414 QYLLQNSALHLLGRQN 429
Score = 141 (54.7 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 357 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGS---EDRIITITGTQDQIQNA 413
Query: 325 QYLI-NMSVELL-RAN 338
QYL+ N ++ LL R N
Sbjct: 414 QYLLQNSALHLLGRQN 429
Score = 105 (42.0 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEFH 509
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +
Sbjct: 366 GSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQDQIQNAQYLLQNSALHLL 425
Query: 510 KNQN 513
QN
Sbjct: 426 GRQN 429
Score = 67 (28.6 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE- 482
+P Y + + +R ++ GSIIG G +K+LR+ + + I + P+
Sbjct: 105 IPTLEEYQHHKGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQS 164
Query: 483 --RIVTVIGSMDSLFRAFSLITKNIEE 507
R+V V G + + + + + I E
Sbjct: 165 TDRVVLVGGKAERVVQCIKTMLELIVE 191
Score = 49 (22.3 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 55 GAVIGKGGKNIKALRTDYNATVSV 78
Score = 49 (22.3 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ + L G++IG G KI E+R + I++ DR + + G + + Q
Sbjct: 125 LLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQST--DRVVLVGGKAERVV--Q 180
Query: 326 YLINMSVELLRANLNG 341
+ M ++ A + G
Sbjct: 181 CIKTMLELIVEAPIKG 196
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 190 (71.9 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 46/166 (27%), Positives = 82/166 (49%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K L + + + + DSS PERI+++ ++++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G+ +LRL++ S RE + ++ +
Sbjct: 105 IPTLEEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 157
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ T+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 158 QECCPHPTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 203
Score = 184 (69.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 45/162 (27%), Positives = 79/162 (48%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K L + + + + DSS PERI+++ ++++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 108
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G+ +LRL++ S RE + ++ + +
Sbjct: 109 EEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 161
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ T+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 162 PHPTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 203
Score = 127 (49.8 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+ +L G++IGKGG +I ++R SGA I+I DR IT+TGT D I A
Sbjct: 367 QVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGS---EDRVITITGTQDQIQNA 423
Query: 770 QYLINMSVE 778
YL+ SV+
Sbjct: 424 PYLLQNSVK 432
Score = 127 (49.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+ +L G++IGKGG +I ++R SGA I+I DR IT+TGT D I A
Sbjct: 367 QVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGS---EDRVITITGTQDQIQNA 423
Query: 325 QYLINMSVE 333
YL+ SV+
Sbjct: 424 PYLLQNSVK 432
Score = 107 (42.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 20/59 (33%), Positives = 38/59 (64%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G +K++R ESG+ I I + + +R++T+ G+ D + A L+ +++++
Sbjct: 376 GSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAPYLLQNSVKQY 434
Score = 76 (31.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + + + +R ++ G IIG G +K+LRE + + I + P
Sbjct: 105 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHP 164
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V + G D + +I I E
Sbjct: 165 TDRVVLIGGKPDRVVECIKIILDLISE 191
Score = 57 (25.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHPT--DRVVLIGGKPDRV 178
Score = 44 (20.5 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 274 GAVIGKGGTKI 284
GAVIGKGG I
Sbjct: 55 GAVIGKGGKNI 65
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 223 (83.6 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQC 536
++E + GGN + LRL++PASQC
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQC 113
Score = 216 (81.1 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 46/91 (50%), Positives = 62/91 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQC 91
+E + GGN + LRL++PASQC
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLVIPASQC 113
Score = 50 (22.7 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 711 MTVPNELIGAVIGKGGTKI 729
+ +P G++IGK GTKI
Sbjct: 106 LVIPASQCGSLIGKAGTKI 124
Score = 50 (22.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 266 MTVPNELIGAVIGKGGTKI 284
+ +P G++IGK GTKI
Sbjct: 106 LVIPASQCGSLIGKAGTKI 124
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 141 (54.7 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 141 (54.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 119 (46.9 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 502 TKNIEE 507
+EE
Sbjct: 105 IPTLEE 110
Score = 113 (44.8 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 108
Query: 61 EE 62
EE
Sbjct: 109 EE 110
Score = 112 (44.5 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 458
Score = 98 (39.6 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+LRL++ S RE + ++ + + P+ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 586 IYQICLIMVDSPPKGATIPYRP 607
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 98 (39.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 81 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+LRL++ S RE + ++ + + P+ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 141 IYQICLIMVDSPPKGATIPYRP 162
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 78 (32.5 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIV 485
NY + + + +R ++ G IIG G +K+LRE + + I + P +R+V
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 486 TVIGSMDSLFRAFSLITKNIEE 507
+ G D + +I I E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 69 (29.3 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIG G +K+LRE + + I + P +R+V + G D + +I I E
Sbjct: 157 GGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISE 215
Score = 59 (25.8 bits), Expect = 3.1e-15, Sum P(3) = 3.1e-15
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 202
Score = 59 (25.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 202
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 55 GAVIGKGGKNIKALRTDYNASVSV 78
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 141 (54.7 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 141 (54.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 119 (46.9 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 502 TKNIEE 507
+EE
Sbjct: 105 IPTLEE 110
Score = 113 (44.8 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 108
Query: 61 EE 62
EE
Sbjct: 109 EE 110
Score = 112 (44.5 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 458
Score = 98 (39.6 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+LRL++ S RE + ++ + + P+ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 586 IYQICLIMVDSPPKGATIPYRP 607
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 98 (39.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 81 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+LRL++ S RE + ++ + + P+ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 141 IYQICLIMVDSPPKGATIPYRP 162
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 78 (32.5 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIV 485
NY + + + +R ++ G IIG G +K+LRE + + I + P +R+V
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 486 TVIGSMDSLFRAFSLITKNIEE 507
+ G D + +I I E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 69 (29.3 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIG G +K+LRE + + I + P +R+V + G D + +I I E
Sbjct: 157 GGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISE 215
Score = 59 (25.8 bits), Expect = 3.1e-15, Sum P(3) = 3.1e-15
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 202
Score = 59 (25.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 202
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 55 GAVIGKGGKNIKALRTDYNASVSV 78
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 141 (54.7 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 141 (54.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 119 (46.9 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 502 TKNIEE 507
+EE
Sbjct: 105 IPTLEE 110
Score = 113 (44.8 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 108
Query: 61 EE 62
EE
Sbjct: 109 EE 110
Score = 112 (44.5 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 458
Score = 98 (39.6 bits), Expect = 7.7e-20, Sum P(3) = 7.7e-20
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+LRL++ S RE + ++ + + P+ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 586 IYQICLIMVDSPPKGATIPYRP 607
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 98 (39.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 81 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+LRL++ S RE + ++ + + P+ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVEC 205
Query: 141 IYQICLIMVDSPPKGATIPYRP 162
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 78 (32.5 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIV 485
NY + + + +R ++ G IIG G +K+LRE + + I + P +R+V
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 486 TVIGSMDSLFRAFSLITKNIEE 507
+ G D + +I I E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 69 (29.3 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIG G +K+LRE + + I + P +R+V + G D + +I I E
Sbjct: 157 GGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISE 215
Score = 59 (25.8 bits), Expect = 3.1e-15, Sum P(3) = 3.1e-15
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 202
Score = 59 (25.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 202
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 55 GAVIGKGGKNIKALRTDYNASVSV 78
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 141 (54.7 bits), Expect = 7.9e-20, Sum P(3) = 7.9e-20
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 372 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 428
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 429 QYLLQNSVK 437
Score = 141 (54.7 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 372 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 428
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 429 QYLLQNSVK 437
Score = 119 (46.9 bits), Expect = 7.9e-20, Sum P(3) = 7.9e-20
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 48 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 107
Query: 502 TKNIEE 507
+EE
Sbjct: 108 IPTLEE 113
Score = 113 (44.8 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 52 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 111
Query: 61 EE 62
EE
Sbjct: 112 EE 113
Score = 112 (44.5 bits), Expect = 5.9e-16, Sum P(3) = 5.9e-16
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 381 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 439
Score = 97 (39.2 bits), Expect = 7.9e-20, Sum P(3) = 7.9e-20
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+LRL++ S RE + ++ + + P ST+R V I G PD V +
Sbjct: 149 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVEC 208
Query: 586 IYQICLIMVDSPPKGATIPYRP 607
I I ++ +SP KG PY P
Sbjct: 209 IKIILDLISESPIKGRAQPYDP 230
Score = 97 (39.2 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 81 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+LRL++ S RE + ++ + + P ST+R V I G PD V +
Sbjct: 149 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVEC 208
Query: 141 IYQICLIMVDSPPKGATIPYRP 162
I I ++ +SP KG PY P
Sbjct: 209 IKIILDLISESPIKGRAQPYDP 230
Score = 78 (32.5 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIV 485
NY + + + +R ++ G IIG G +K+LRE + + I + P+ R+V
Sbjct: 137 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 196
Query: 486 TVIGSMDSLFRAFSLITKNIEE 507
+ G D + +I I E
Sbjct: 197 LIGGKPDRVVECIKIILDLISE 218
Score = 69 (29.3 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 62
G IIG G +K+LRE + + I + P+ R+V + G D + +I I E
Sbjct: 160 GGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISE 218
Score = 59 (25.8 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 152 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQST--DRVVLIGGKPDRV 205
Score = 59 (25.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 152 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQST--DRVVLIGGKPDRV 205
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 58 GAVIGKGGKNIKALRTDYNASVSV 81
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 141 (54.7 bits), Expect = 9.9e-20, Sum P(3) = 9.9e-20
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 141 (54.7 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 447
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 448 QYLLQNSVK 456
Score = 119 (46.9 bits), Expect = 9.9e-20, Sum P(3) = 9.9e-20
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 502 TKNIEE 507
+EE
Sbjct: 105 IPTLEE 110
Score = 113 (44.8 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 108
Query: 61 EE 62
EE
Sbjct: 109 EE 110
Score = 112 (44.5 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 458
Score = 97 (39.2 bits), Expect = 9.9e-20, Sum P(3) = 9.9e-20
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+LRL++ S RE + ++ + + P ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVEC 205
Query: 586 IYQICLIMVDSPPKGATIPYRP 607
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 97 (39.2 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 81 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+LRL++ S RE + ++ + + P ST+R V I G PD V +
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVEC 205
Query: 141 IYQICLIMVDSPPKGATIPYRP 162
I I ++ +SP KG PY P
Sbjct: 206 IKIILDLISESPIKGRAQPYDP 227
Score = 78 (32.5 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIV 485
NY + + + +R ++ G IIG G +K+LRE + + I + P+ R+V
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 193
Query: 486 TVIGSMDSLFRAFSLITKNIEE 507
+ G D + +I I E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 69 (29.3 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 62
G IIG G +K+LRE + + I + P+ R+V + G D + +I I E
Sbjct: 157 GGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISE 215
Score = 59 (25.8 bits), Expect = 3.1e-15, Sum P(3) = 3.1e-15
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQST--DRVVLIGGKPDRV 202
Score = 59 (25.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 766
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQST--DRVVLIGGKPDRV 202
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 55 GAVIGKGGKNIKALRTDYNASVSV 78
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 141 (54.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 141 (54.7 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 107 (42.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 167 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 226
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 227 PEQNRKAVELIIQKIQE 243
Score = 101 (40.6 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 121
Query: 62 EFHKNQNK 69
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 101 (40.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 121
Query: 507 EFHKNQNK 514
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 97 (39.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 184 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 243
Score = 85 (35.0 bits), Expect = 4.4e-17, Sum P(3) = 4.4e-17
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 109
Score = 85 (35.0 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 85 (35.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 77 (32.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 433 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 492
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 56 (24.8 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 448 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 55 (24.4 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 132
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 133 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 173
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TVEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
Score = 55 (24.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 577
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 578 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 618
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TVEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 141 (54.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 141 (54.7 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 107 (42.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 167 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 226
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 227 PEQNRKAVELIIQKIQE 243
Score = 101 (40.6 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 121
Query: 62 EFHKNQNK 69
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 101 (40.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 121
Query: 507 EFHKNQNK 514
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 97 (39.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 184 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 243
Score = 85 (35.0 bits), Expect = 4.4e-17, Sum P(3) = 4.4e-17
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 109
Score = 85 (35.0 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 85 (35.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 77 (32.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 433 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 492
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 56 (24.8 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 448 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 55 (24.4 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 132
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 133 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 173
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TVEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
Score = 55 (24.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 577
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 578 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 618
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TVEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 141 (54.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 141 (54.7 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 107 (42.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 167 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 226
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 227 PEQNRKAVELIIQKIQE 243
Score = 101 (40.6 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 121
Query: 62 EFHKNQNK 69
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 101 (40.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 121
Query: 507 EFHKNQNK 514
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 97 (39.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 184 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 243
Score = 85 (35.0 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 85 (35.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 84 (34.6 bits), Expect = 5.5e-17, Sum P(3) = 5.5e-17
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL 109
Score = 77 (32.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 433 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 492
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 56 (24.8 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 448 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 54 (24.1 bits), Expect = 6.4e-14, Sum P(3) = 6.4e-14
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 132
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 133 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 173
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TIEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
Score = 54 (24.1 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 577
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 578 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 618
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TIEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 141 (54.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 141 (54.7 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 484
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 485 QYLITQRI 492
Score = 107 (42.7 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 167 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 226
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 227 PEQNRKAVELIIQKIQE 243
Score = 101 (40.6 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 121
Query: 62 EFHKNQNK 69
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 101 (40.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 121
Query: 507 EFHKNQNK 514
E +N K
Sbjct: 122 EMPQNVAK 129
Score = 97 (39.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 184 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 243
Score = 85 (35.0 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 85 (35.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 233
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 234 VELIIQKIQ 242
Score = 84 (34.6 bits), Expect = 5.5e-17, Sum P(3) = 5.5e-17
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL 109
Score = 77 (32.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 433 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 492
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 64 (27.6 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 227
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 228 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 269
Score = 56 (24.8 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 448 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 54 (24.1 bits), Expect = 6.4e-14, Sum P(3) = 6.4e-14
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 132
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 133 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 173
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TIEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
Score = 54 (24.1 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 23/104 (22%), Positives = 43/104 (41%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKG 577
GE L++++P+ ++ +GA++ ++ D P +TER I+G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 578 VPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 618
+A+ A++ + P+ T P L PQ P I
Sbjct: 105 TIEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 147
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 141 (54.7 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 327 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 383
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 384 QYLLQNSVK 392
Score = 141 (54.7 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 327 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 383
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 384 QYLLQNSVK 392
Score = 119 (46.9 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 19 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 78
Query: 502 TKNIEE 507
+EE
Sbjct: 79 IPTLEE 84
Score = 113 (44.8 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 23 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 82
Query: 61 EE 62
EE
Sbjct: 83 EE 84
Score = 112 (44.5 bits), Expect = 9.7e-15, Sum P(3) = 9.7e-15
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 336 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 394
Score = 83 (34.3 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 557 SVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
++ + + P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 113 TIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 163
Score = 83 (34.3 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 112 SVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
++ + + P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 113 TIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 163
Score = 49 (22.3 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRI 297
GAVIGKGG I +R A + +
Sbjct: 29 GAVIGKGGKNIKALRTDYNASVSV 52
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 181 (68.8 bits), Expect = 8.3e-18, Sum P(2) = 8.3e-18
Identities = 55/199 (27%), Positives = 95/199 (47%)
Query: 439 QRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFR 496
Q +R ++ +E G IIGK+G+ V +LR + K ++ + + +R++T+ G ++++ R
Sbjct: 93 QLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTISGPLENVVR 152
Query: 497 AFSLITKNIEEFHKNQNKHLGGNGESQLIQ-LRLIVPASQCXXXXXXXXXXXXXXRETSG 555
A+ I I+ F KN G ++ + LRL++ S ++
Sbjct: 153 AYRFI---IDIFAKNSTNPDGTPSDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQDKCS 209
Query: 556 ASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPLPQNAGG 614
+ + DMLP STER V I G D + AI++I ++D +GA T+ Y P+ +
Sbjct: 210 CRMIASKDMLPQSTERTVEIHGTVDNLHAAIWEIGKCLIDDWERGAGTVFYNPVSRLTQP 269
Query: 615 -PGLIGNQFGMQNSLMGAP 632
P L Q S AP
Sbjct: 270 LPSLASTASPQQVSPPAAP 288
Score = 172 (65.6 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 53/189 (28%), Positives = 90/189 (47%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIE 61
+E G IIGK+G+ V +LR + K ++ + + +R++T+ G ++++ RA+ I I+
Sbjct: 103 REAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTISGPLENVVRAYRFI---ID 159
Query: 62 EFHKNQNKHLGGNGESQLIQ-LRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
F KN G ++ + LRL++ S ++ + + DML
Sbjct: 160 IFAKNSTNPDGTPSDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRMIASKDML 219
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA-TIPYRPLPQNAGG-PGLIGNQFG 178
P STER V I G D + AI++I ++D +GA T+ Y P+ + P L
Sbjct: 220 PQSTERTVEIHGTVDNLHAAIWEIGKCLIDDWERGAGTVFYNPVSRLTQPLPSLASTASP 279
Query: 179 MQNSLMGAP 187
Q S AP
Sbjct: 280 QQVSPPAAP 288
Score = 110 (43.8 bits), Expect = 8.3e-18, Sum P(2) = 8.3e-18
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+++P +++G +IG+GG+KI EIR+ SG+ I I +R T+TGT + A
Sbjct: 325 ISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDET--GERMFTITGTHEENEKAL 382
Query: 771 YLINMSVEL 779
+L+ +E+
Sbjct: 383 FLLYQQLEM 391
Score = 110 (43.8 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+++P +++G +IG+GG+KI EIR+ SG+ I I +R T+TGT + A
Sbjct: 325 ISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDET--GERMFTITGTHEENEKAL 382
Query: 326 YLINMSVEL 334
+L+ +E+
Sbjct: 383 FLLYQQLEM 391
Score = 95 (38.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS---STPERIVTVIGSMDSLFRAFSLITKNIEE 507
VG IIG+ G + ++R SGSKI I+ T ER+ T+ G+ + +A L+ + +E
Sbjct: 332 VGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENEKALFLLYQQLE- 390
Query: 508 FHKNQNKH 515
K++ H
Sbjct: 391 MEKDRRSH 398
Score = 54 (24.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIR-KISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ + + L+G++IG+ G +I I+ K S MI +RT+ + GT D + A
Sbjct: 183 LLIAHSLMGSIIGRNGLRIKLIQDKCSCRMI---ASKDMLPQSTERTVEIHGTVDNLHAA 239
Score = 54 (24.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 20/86 (23%), Positives = 35/86 (40%)
Query: 274 GAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSVE 333
G +IGK G + E+R + + +DR +T++G + + A I ++
Sbjct: 106 GIIIGKAGKNVAELRSTTNVKAGVTKAVPNV---HDRVLTISGPLENVVRAYRFI---ID 159
Query: 334 LLRANLNGEGGGESNMDDFSSDNNLP 359
+ N +N D SD N P
Sbjct: 160 IFAKN-------STNPDGTPSDANTP 178
Score = 45 (20.9 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIY 587
R TSG+ + +A + + ER I G + +A++
Sbjct: 347 RRTSGSKISIAKEPHDETGERMFTITGTHEENEKALF 383
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 141 (54.7 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 428 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 487
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 488 QYLITQRI 495
Score = 141 (54.7 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 428 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 487
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 488 QYLITQRI 495
Score = 106 (42.4 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 170 TTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGE 229
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 230 PEQNRKAVELIIQKIQE 246
Score = 96 (38.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 187 GLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 246
Score = 93 (37.8 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS--------TPERIVTVIGSMDSLFRAFSLITK 58
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I +
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAE 121
Query: 59 NIEEFHKNQNK 69
I E +N K
Sbjct: 122 KIREMPQNVAK 132
Score = 93 (37.8 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS--------TPERIVTVIGSMDSLFRAFSLITK 503
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I +
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAE 121
Query: 504 NIEEFHKNQNK 514
I E +N K
Sbjct: 122 KIREMPQNVAK 132
Score = 84 (34.6 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 236
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 237 VELIIQKIQ 245
Score = 84 (34.6 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 236
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 237 VELIIQKIQ 245
Score = 77 (32.2 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 436 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 495
Score = 74 (31.1 bits), Expect = 7.5e-16, Sum P(3) = 7.5e-16
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXX---XNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112
Score = 64 (27.6 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 172 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 230
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 231 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 272
Score = 64 (27.6 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 172 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 230
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 231 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 272
Score = 56 (24.8 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 451 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 491
Score = 49 (22.3 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 23/107 (21%), Positives = 43/107 (40%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-----DMLPNSTEREVN 129
GE L++++P+ ++ +GA++ ++ D P +TER
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCL 104
Query: 130 IKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 173
I+G +A+ A++ + P+ T P L PQ P I
Sbjct: 105 IQGTVEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 150
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/107 (21%), Positives = 43/107 (40%)
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-----DMLPNSTEREVN 574
GE L++++P+ ++ +GA++ ++ D P +TER
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCL 104
Query: 575 IKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 618
I+G +A+ A++ + P+ T P L PQ P I
Sbjct: 105 IQGTVEALN-AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 150
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 152 (58.6 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P EL GA+IGKGG +I IR S A I I NDR IT++GTP I +A
Sbjct: 424 QVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNS---NDRIITISGTPKQIQMA 480
Query: 770 QYLINMSV--ELLRANLNGEG 788
QYL+ SV E +L+G+G
Sbjct: 481 QYLLQQSVHEEWQAKHLSGQG 501
Score = 152 (58.6 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P EL GA+IGKGG +I IR S A I I NDR IT++GTP I +A
Sbjct: 424 QVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNS---NDRIITISGTPKQIQMA 480
Query: 325 QYLINMSV--ELLRANLNGEG 343
QYL+ SV E +L+G+G
Sbjct: 481 QYLLQQSVHEEWQAKHLSGQG 501
Score = 136 (52.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 39/171 (22%), Positives = 77/171 (45%)
Query: 439 QRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAF 498
+ +R ++ G++IGK G+ ++K+R + + + + DS PER + + ++S
Sbjct: 22 EETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIES---TL 78
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGAS- 557
+IT+ ++ F + +RL++ S R+ G
Sbjct: 79 EIITEMLKYFEERDED----------FDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRF 128
Query: 558 VYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ V S++ P ST+R V G V +A+ ++ + D+P KGA Y P+
Sbjct: 129 LKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPM 179
Score = 133 (51.9 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 38/158 (24%), Positives = 72/158 (45%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKN 66
G++IGK G+ ++K+R + + + + DS PER + + ++S +IT+ ++ F +
Sbjct: 35 GAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIES---TLEIITEMLKYFEER 91
Query: 67 QNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGAS-VYVASDMLPNSTE 125
+RL++ S R+ G + V S++ P ST+
Sbjct: 92 DED----------FDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTD 141
Query: 126 REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 163
R V G V +A+ ++ + D+P KGA Y P+
Sbjct: 142 RVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPM 179
Score = 115 (45.5 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 35/107 (32%), Positives = 57/107 (53%)
Query: 425 PQG-PNYA-NIQTTGVQRRMRHIMQGKEV-GSIIGKSGETVKKLREESGSKIYISDS--S 479
P G PN A N+ + KE+ G+IIGK G ++++R ES + I I + +
Sbjct: 403 PNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPN 462
Query: 480 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQ 526
+ +RI+T+ G+ + A L+ +++ E + Q KHL G G QL Q
Sbjct: 463 SNDRIITISGTPKQIQMAQYLLQQSVHE--EWQAKHLSGQGLEQLQQ 507
Score = 64 (27.6 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIR 288
+GP + +P+ + GAVIGKGG I ++R
Sbjct: 10 EGPQDQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMR 49
Score = 63 (27.2 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTG 316
+ + L G VIGKGG KI EIR G + DR + G
Sbjct: 99 LLIHQSLAGCVIGKGGQKIKEIRDRIGCRF-LKVFSNVAPQSTDRVVQTVG 148
Score = 61 (26.5 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 556 ASVYVASDM-LPNSTEREVNIKGVPDAVTQAIY 587
+S Y+ D LPNS +R + I G P + A Y
Sbjct: 450 SSAYITIDEPLPNSNDRIITISGTPKQIQMAQY 482
Score = 49 (22.3 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 610 QNAGGPGLIGNQF-GMQNSLMGA 631
QN GGPG +GN G N +GA
Sbjct: 361 QNPGGPGGLGNGLSGGANGGVGA 383
Score = 49 (22.3 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 165 QNAGGPGLIGNQF-GMQNSLMGA 186
QN GGPG +GN G N +GA
Sbjct: 361 QNPGGPGGLGNGLSGGANGGVGA 383
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 151 (58.2 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 40/148 (27%), Positives = 71/148 (47%)
Query: 15 ETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGN 74
+ +K LR + + + + DSS PERI+++ ++++ I +EE+ +H G+
Sbjct: 52 KNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEY-----QHYKGS 106
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 134
+LRL++ S RE + ++ + + P+ST+R V I G P
Sbjct: 107 DFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 164
Query: 135 DAVTQAIYQICLIMVDSPPKGATIPYRP 162
D V + I I ++ +SP KG PY P
Sbjct: 165 DRVVECIKIILDLISESPIKGRAQPYDP 192
Score = 151 (58.2 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 40/148 (27%), Positives = 71/148 (47%)
Query: 460 ETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGN 519
+ +K LR + + + + DSS PERI+++ ++++ I +EE+ +H G+
Sbjct: 52 KNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEY-----QHYKGS 106
Query: 520 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 579
+LRL++ S RE + ++ + + P+ST+R V I G P
Sbjct: 107 DFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 164
Query: 580 DAVTQAIYQICLIMVDSPPKGATIPYRP 607
D V + I I ++ +SP KG PY P
Sbjct: 165 DRVVECIKIILDLISESPIKGRAQPYDP 192
Score = 141 (54.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 356 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 412
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 413 QYLLQNSVK 421
Score = 141 (54.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IGKGG +I +IR SGA I+I DR IT+TGT D I A
Sbjct: 356 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGS---EDRIITITGTQDQIQNA 412
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 413 QYLLQNSVK 421
Score = 112 (44.5 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIGK G+ +K++R ESG+ I I + + +RI+T+ G+ D + A L+ +++++
Sbjct: 365 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 423
Score = 76 (31.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP-- 481
+P Y + + + +R ++ G IIG G +K+LRE + + I + P
Sbjct: 94 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 153
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEE 507
+R+V + G D + +I I E
Sbjct: 154 TDRVVLIGGKPDRVVECIKIILDLISE 180
Score = 69 (29.3 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIG G +K+LRE + + I + P +R+V + G D + +I I E
Sbjct: 122 GGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISE 180
Score = 59 (25.8 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G KI E+R+ + I++ DR + + G PD +
Sbjct: 114 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHST--DRVVLIGGKPDRV 167
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 139 (54.0 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 382 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 441
Query: 770 QYLINMSV 777
QYLI+ V
Sbjct: 442 QYLISQRV 449
Score = 139 (54.0 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 382 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 441
Query: 325 QYLINMSV 332
QYLI+ V
Sbjct: 442 QYLISQRV 449
Score = 131 (51.2 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 17 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 76
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E + K N + Q +LIVP S E SGA V
Sbjct: 77 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 136
Query: 114 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 170
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 137 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 192
Query: 171 GLIGNQFG 178
N G
Sbjct: 193 VANSNPTG 200
Score = 131 (51.2 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 17 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 76
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E + K N + Q +LIVP S E SGA V
Sbjct: 77 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 136
Query: 559 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 615
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 137 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 192
Query: 616 GLIGNQFG 623
N G
Sbjct: 193 VANSNPTG 200
Score = 108 (43.1 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 425 PQGPNYANIQTTGVQRRMRH---IMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--- 478
P+ N QTT R + I+ G IIGK G TVK + E+SG+ + +S
Sbjct: 85 PEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG 144
Query: 479 -STPERIVTVIGSMDSLFRAFSLITKNIEE 507
+ ER+VTV G + + +A S I + ++E
Sbjct: 145 INLQERVVTVSGEPEQVHKAVSAIVQKVQE 174
Score = 87 (35.7 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI-AL 323
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+ A+
Sbjct: 8 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 67
Query: 324 AQYLINMSVELLRA 337
++ E+ +A
Sbjct: 68 HSFIAEKVREIPQA 81
Score = 86 (35.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 106 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 164
Query: 325 QYLINMSVE 333
I V+
Sbjct: 165 VSAIVQKVQ 173
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 106 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 164
Query: 770 QYLINMSVE 778
I V+
Sbjct: 165 VSAIVQKVQ 173
Score = 75 (31.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ GS + A LI++ +
Sbjct: 390 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 449
Score = 56 (24.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + LP + R V I G P A A Y I
Sbjct: 405 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 445
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 139 (54.0 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 434 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 493
Query: 770 QYLINMSV 777
QYLI+ V
Sbjct: 494 QYLISQRV 501
Score = 139 (54.0 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 434 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 493
Query: 325 QYLINMSV 332
QYLI+ V
Sbjct: 494 QYLISQRV 501
Score = 135 (52.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 54/188 (28%), Positives = 80/188 (42%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L A S I + +
Sbjct: 69 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAAHSFIAEKVR 128
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E + K N + Q +LIVP S E SGA V
Sbjct: 129 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 188
Query: 114 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 170
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 189 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 244
Query: 171 GLIGNQFG 178
N G
Sbjct: 245 VANSNPTG 252
Score = 135 (52.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 54/188 (28%), Positives = 80/188 (42%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L A S I + +
Sbjct: 69 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAAHSFIAEKVR 128
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E + K N + Q +LIVP S E SGA V
Sbjct: 129 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 188
Query: 559 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 615
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 189 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 244
Query: 616 GLIGNQFG 623
N G
Sbjct: 245 VANSNPTG 252
Score = 108 (43.1 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 425 PQGPNYANIQTTGVQRRMRH---IMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--- 478
P+ N QTT R + I+ G IIGK G TVK + E+SG+ + +S
Sbjct: 137 PEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG 196
Query: 479 -STPERIVTVIGSMDSLFRAFSLITKNIEE 507
+ ER+VTV G + + +A S I + ++E
Sbjct: 197 INLQERVVTVSGEPEQVHKAVSAIVQKVQE 226
Score = 89 (36.4 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+ A
Sbjct: 60 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAA 119
Query: 325 QYLI 328
I
Sbjct: 120 HSFI 123
Score = 86 (35.3 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 158 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 216
Query: 325 QYLINMSVE 333
I V+
Sbjct: 217 VSAIVQKVQ 225
Score = 86 (35.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 158 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 216
Query: 770 QYLINMSVE 778
I V+
Sbjct: 217 VSAIVQKVQ 225
Score = 75 (31.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ GS + A LI++ +
Sbjct: 442 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 501
Score = 56 (24.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + LP + R V I G P A A Y I
Sbjct: 457 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 497
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 139 (54.0 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 469
Query: 770 QYLINMSV 777
QYLI+ V
Sbjct: 470 QYLISQRV 477
Score = 139 (54.0 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 469
Query: 325 QYLINMSV 332
QYLI+ V
Sbjct: 470 QYLISQRV 477
Score = 131 (51.2 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 45 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 104
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E + K N + Q +LIVP S E SGA V
Sbjct: 105 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 164
Query: 114 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 170
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 165 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 220
Query: 171 GLIGNQFG 178
N G
Sbjct: 221 VANSNPTG 228
Score = 131 (51.2 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 45 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 104
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E + K N + Q +LIVP S E SGA V
Sbjct: 105 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 164
Query: 559 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 615
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 165 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 220
Query: 616 GLIGNQFG 623
N G
Sbjct: 221 VANSNPTG 228
Score = 108 (43.1 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 425 PQGPNYANIQTTGVQRRMRH---IMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--- 478
P+ N QTT R + I+ G IIGK G TVK + E+SG+ + +S
Sbjct: 113 PEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG 172
Query: 479 -STPERIVTVIGSMDSLFRAFSLITKNIEE 507
+ ER+VTV G + + +A S I + ++E
Sbjct: 173 INLQERVVTVSGEPEQVHKAVSAIVQKVQE 202
Score = 87 (35.7 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI-AL 323
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+ A+
Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 95
Query: 324 AQYLINMSVELLRA 337
++ E+ +A
Sbjct: 96 HSFIAEKVREIPQA 109
Score = 86 (35.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 192
Query: 325 QYLINMSVE 333
I V+
Sbjct: 193 VSAIVQKVQ 201
Score = 86 (35.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 192
Query: 770 QYLINMSVE 778
I V+
Sbjct: 193 VSAIVQKVQ 201
Score = 75 (31.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ GS + A LI++ +
Sbjct: 418 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 477
Score = 56 (24.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + LP + R V I G P A A Y I
Sbjct: 433 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 473
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 139 (54.0 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 479
Query: 770 QYLINMSV 777
QYLI+ V
Sbjct: 480 QYLISQRV 487
Score = 139 (54.0 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 479
Query: 325 QYLINMSV 332
QYLI+ V
Sbjct: 480 QYLISQRV 487
Score = 131 (51.2 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 55 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 114
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E + K N + Q +LIVP S E SGA V
Sbjct: 115 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 174
Query: 114 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 170
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 175 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 230
Query: 171 GLIGNQFG 178
N G
Sbjct: 231 VANSNPTG 238
Score = 131 (51.2 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 55 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 114
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E + K N + Q +LIVP S E SGA V
Sbjct: 115 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 174
Query: 559 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 615
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 175 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 230
Query: 616 GLIGNQFG 623
N G
Sbjct: 231 VANSNPTG 238
Score = 108 (43.1 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 425 PQGPNYANIQTTGVQRRMRH---IMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--- 478
P+ N QTT R + I+ G IIGK G TVK + E+SG+ + +S
Sbjct: 123 PEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG 182
Query: 479 -STPERIVTVIGSMDSLFRAFSLITKNIEE 507
+ ER+VTV G + + +A S I + ++E
Sbjct: 183 INLQERVVTVSGEPEQVHKAVSAIVQKVQE 212
Score = 87 (35.7 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI-AL 323
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+ A+
Sbjct: 46 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 105
Query: 324 AQYLINMSVELLRA 337
++ E+ +A
Sbjct: 106 HSFIAEKVREIPQA 119
Score = 86 (35.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 144 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 202
Query: 325 QYLINMSVE 333
I V+
Sbjct: 203 VSAIVQKVQ 211
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 144 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 202
Query: 770 QYLINMSVE 778
I V+
Sbjct: 203 VSAIVQKVQ 211
Score = 75 (31.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ GS + A LI++ +
Sbjct: 428 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 487
Score = 56 (24.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + LP + R V I G P A A Y I
Sbjct: 443 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 483
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 206 (77.6 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 60/189 (31%), Positives = 96/189 (50%)
Query: 436 TGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDS 493
T +Q RM KE +I+G+ GET+ LRE++ +I +S++ PERIV V G ++
Sbjct: 158 TFIQLRM--YCPVKEASTIVGRKGETINHLREKANVRITVSENLKGVPERIVAVKGPAEN 215
Query: 494 LFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRET 553
+ RAF LIT+ I E +++ + SQ L+L++P E
Sbjct: 216 VARAFGLITRVILEEPEDEPASIN----SQQYNLKLLIPHPMIGFIIGKQGLKFREIEEN 271
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPP---KGATI---P--Y 605
S A + A + LP ST+R +++ GV DA+ A+Y I +M++ K + P Y
Sbjct: 272 SAAKLKAAENALPYSTDRVLSVMGVGDAIHIAVYYIAQVMLEHKEVLKKHKVVLYNPANY 331
Query: 606 RPLPQNAGG 614
+P Q+ GG
Sbjct: 332 QPTDQSLGG 340
Score = 205 (77.2 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 56/176 (31%), Positives = 91/176 (51%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIE 61
KE +I+G+ GET+ LRE++ +I +S++ PERIV V G +++ RAF LIT+ I
Sbjct: 169 KEASTIVGRKGETINHLREKANVRITVSENLKGVPERIVAVKGPAENVARAFGLITRVIL 228
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
E +++ + SQ L+L++P E S A + A + LP
Sbjct: 229 EEPEDEPASIN----SQQYNLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAAENALP 284
Query: 122 NSTEREVNIKGVPDAVTQAIYQICLIMVDSPP---KGATI---P--YRPLPQNAGG 169
ST+R +++ GV DA+ A+Y I +M++ K + P Y+P Q+ GG
Sbjct: 285 YSTDRVLSVMGVGDAIHIAVYYIAQVMLEHKEVLKKHKVVLYNPANYQPTDQSLGG 340
Score = 90 (36.7 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P+ +IG +IGK G K EI + S A ++ DR +++ G DAI +A
Sbjct: 246 KLLIPHPMIGFIIGKQGLKFREIEENSAAKLK--AAENALPYSTDRVLSVMGVGDAIHIA 303
Query: 325 QYLI 328
Y I
Sbjct: 304 VYYI 307
Score = 82 (33.9 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 26/76 (34%), Positives = 37/76 (48%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAM-IRIXXXXXXXXX-------XNDRTITMTG 761
++ V N IG+VIGK G I IR+ S ++I N R +T+TG
Sbjct: 445 DVFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIRKLTLTG 504
Query: 762 TPDAIALAQYLINMSV 777
T ++I A YLIN +
Sbjct: 505 TLNSIQTAIYLINQRI 520
Score = 82 (33.9 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 26/76 (34%), Positives = 37/76 (48%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAM-IRIXXXXXXXXX-------XNDRTITMTG 316
++ V N IG+VIGK G I IR+ S ++I N R +T+TG
Sbjct: 445 DVFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIRKLTLTG 504
Query: 317 TPDAIALAQYLINMSV 332
T ++I A YLIN +
Sbjct: 505 TLNSIQTAIYLINQRI 520
Score = 64 (27.6 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
IQLR+ P + RE + + V S+ L ER V +KG + V +
Sbjct: 160 IQLRMYCPVKEASTIVGRKGETINHLREKANVRITV-SENLKGVPERIVAVKGPAENVAR 218
Query: 140 AIYQICLIMVDSP 152
A I ++++ P
Sbjct: 219 AFGLITRVILEEP 231
Score = 60 (26.2 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 451 VGSIIGKSGETVKKLREES-----------GSKIYISDSS--TPERIVTVIGSMDSLFRA 497
+GS+IGK G +K +RE S G + + T R +T+ G+++S+ A
Sbjct: 453 IGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIRKLTLTGTLNSIQTA 512
Query: 498 FSLITKNI 505
LI + I
Sbjct: 513 IYLINQRI 520
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 139 (54.0 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 472 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 531
Query: 770 QYLINMSV 777
QYLI+ V
Sbjct: 532 QYLISQRV 539
Score = 139 (54.0 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 472 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 531
Query: 325 QYLINMSV 332
QYLI+ V
Sbjct: 532 QYLISQRV 539
Score = 131 (51.2 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 107 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 166
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E + K N + Q +LIVP S E SGA V
Sbjct: 167 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 226
Query: 114 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 170
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 227 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 282
Query: 171 GLIGNQFG 178
N G
Sbjct: 283 VANSNPTG 290
Score = 131 (51.2 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 53/188 (28%), Positives = 79/188 (42%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ V G+ ++L S I + +
Sbjct: 107 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVR 166
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E + K N + Q +LIVP S E SGA V
Sbjct: 167 EIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 226
Query: 559 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGP 615
++ N ER V + G P+ V +A+ I + + P + I Y N GP
Sbjct: 227 QLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA----NVAGP 282
Query: 616 GLIGNQFG 623
N G
Sbjct: 283 VANSNPTG 290
Score = 108 (43.1 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 425 PQGPNYANIQTTGVQRRMRH---IMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--- 478
P+ N QTT R + I+ G IIGK G TVK + E+SG+ + +S
Sbjct: 175 PEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG 234
Query: 479 -STPERIVTVIGSMDSLFRAFSLITKNIEE 507
+ ER+VTV G + + +A S I + ++E
Sbjct: 235 INLQERVVTVSGEPEQVHKAVSAIVQKVQE 264
Score = 87 (35.7 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI-AL 323
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+ A+
Sbjct: 98 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAV 157
Query: 324 AQYLINMSVELLRA 337
++ E+ +A
Sbjct: 158 HSFIAEKVREIPQA 171
Score = 86 (35.3 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 196 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 254
Query: 325 QYLINMSVE 333
I V+
Sbjct: 255 VSAIVQKVQ 263
Score = 86 (35.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ + A
Sbjct: 196 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 254
Query: 770 QYLINMSVE 778
I V+
Sbjct: 255 VSAIVQKVQ 263
Score = 75 (31.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ GS + A LI++ +
Sbjct: 480 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 539
Score = 56 (24.8 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + LP + R V I G P A A Y I
Sbjct: 495 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 535
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 122 (48.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 36/152 (23%), Positives = 70/152 (46%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFR 496
+R ++ GS+IGK G T+ + + +SG++I +S + T +RI+ + GS+ +
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVN 96
Query: 497 AFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGA 556
LI +++ H + G E + ++RL+VP S C E S A
Sbjct: 97 GLELI---LDKLHSELHAEDGNEVEPRR-RIRLVVPNSSCGGIIGKGGATIKSFIEESKA 152
Query: 557 SVYVA--SDMLPNSTEREVNIKGVPDAVTQAI 586
+ ++ + ++R V + G + +AI
Sbjct: 153 GIKISPLDNTFYGLSDRLVTLSGTFEEQMRAI 184
Score = 120 (47.3 bits), Expect = 9.5e-17, Sum P(3) = 9.5e-17
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 439 QRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS--DSS---TPERIVTVIGSMDS 493
+RR+R ++ G IIGK G T+K EES + I IS D++ +R+VT+ G+ +
Sbjct: 120 RRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEE 179
Query: 494 LFRAFSLI-TKNIEEFHKNQNKH 515
RA LI K E+ H +QN H
Sbjct: 180 QMRAIDLILAKLTEDDHYSQNVH 202
Score = 116 (45.9 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 35/142 (24%), Positives = 66/142 (46%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GS+IGK G T+ + + +SG++I +S + T +RI+ + GS+ + LI ++
Sbjct: 47 GSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELI---LD 103
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA--SDM 119
+ H + G E + ++RL+VP S C E S A + ++ +
Sbjct: 104 KLHSELHAEDGNEVEPRR-RIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNT 162
Query: 120 LPNSTEREVNIKGVPDAVTQAI 141
++R V + G + +AI
Sbjct: 163 FYGLSDRLVTLSGTFEEQMRAI 184
Score = 110 (43.8 bits), Expect = 9.5e-17, Sum P(3) = 9.5e-17
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
V +E IG V+G+GG I EI +++GA I+I DR +++TG AI A+ +
Sbjct: 261 VADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETM 320
Query: 773 INMSVE 778
I V+
Sbjct: 321 IKQKVD 326
Score = 110 (43.8 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
V +E IG V+G+GG I EI +++GA I+I DR +++TG AI A+ +
Sbjct: 261 VADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETM 320
Query: 328 INMSVE 333
I V+
Sbjct: 321 IKQKVD 326
Score = 104 (41.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 7 GSIIGKSGETVKKLREESGSKIYIS--DSS---TPERIVTVIGSMDSLFRAFSLI-TKNI 60
G IIGK G T+K EES + I IS D++ +R+VT+ G+ + RA LI K
Sbjct: 133 GGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQMRAIDLILAKLT 192
Query: 61 EEFHKNQNKH 70
E+ H +QN H
Sbjct: 193 EDDHYSQNVH 202
Score = 93 (37.8 bits), Expect = 9.5e-17, Sum P(3) = 9.5e-17
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
V N G+VIGKGG+ I E + SGA I++ DR I ++G+ + L
Sbjct: 41 VSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLEL 100
Query: 328 INMSVELLRANLNGEGGGE 346
I ++ L + L+ E G E
Sbjct: 101 I---LDKLHSELHAEDGNE 116
Score = 84 (34.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGT 317
+ VPN G +IGKGG I + S A I+I +DR +T++GT
Sbjct: 125 LVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGT 176
Score = 84 (34.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGT 762
+ VPN G +IGKGG I + S A I+I +DR +T++GT
Sbjct: 125 LVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGT 176
Score = 76 (31.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 15/63 (23%), Positives = 38/63 (60%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISD-----SSTPERIVTVIGSMDSLFRAFSLITK 503
+ +G ++G+ G + ++ + +G++I ISD S T +R V++ G ++ +A ++I +
Sbjct: 264 EHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIKQ 323
Query: 504 NIE 506
++
Sbjct: 324 KVD 326
Score = 50 (22.7 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 552 ETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQA 585
+ +GA + ++ D + +T+R+V+I G A+ QA
Sbjct: 282 QMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQA 317
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 162 (62.1 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 55/176 (31%), Positives = 80/176 (45%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFS- 499
R ++ KE G +IG +G+ + +R E+ +K IS + ERI+TV G +D +A S
Sbjct: 73 RVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGKLDDCAKALSY 132
Query: 500 ----LITKNIEEFHKNQNKHLGG--NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRET 553
LI NIE ++ K L N E I LRL++P SQ +
Sbjct: 133 FAQALINANIESYNYFPLKQLSSTPNTEETTI-LRLLIPNSQMGTLIGSKGARIQQLQNN 191
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDSPPKGATIPYRP 607
S+ + LP S ER V ++G D + ++ I CLI S G T Y P
Sbjct: 192 FNISMIASKSFLPGSNERLVELQGTVDDLYDSLRIISRCLIEDFSSIVGTTY-YVP 246
Score = 158 (60.7 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 54/173 (31%), Positives = 78/173 (45%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFS---- 54
+ KE G +IG +G+ + +R E+ +K IS + ERI+TV G +D +A S
Sbjct: 76 VSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGKLDDCAKALSYFAQ 135
Query: 55 -LITKNIEEFHKNQNKHLGG--NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGA 111
LI NIE ++ K L N E I LRL++P SQ +
Sbjct: 136 ALINANIESYNYFPLKQLSSTPNTEETTI-LRLLIPNSQMGTLIGSKGARIQQLQNNFNI 194
Query: 112 SVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI--CLIMVDSPPKGATIPYRP 162
S+ + LP S ER V ++G D + ++ I CLI S G T Y P
Sbjct: 195 SMIASKSFLPGSNERLVELQGTVDDLYDSLRIISRCLIEDFSSIVGTTY-YVP 246
Score = 119 (46.9 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
++ PN+++GA+IGK G++I +RK+SGAMI I N+R T+TG+ A+ A+
Sbjct: 291 ISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGE---NERVFTITGSSHAVDKAK 347
Query: 771 YLI 773
+I
Sbjct: 348 QMI 350
Score = 119 (46.9 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
++ PN+++GA+IGK G++I +RK+SGAMI I N+R T+TG+ A+ A+
Sbjct: 291 ISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGE---NERVFTITGSSHAVDKAK 347
Query: 326 YLI 328
+I
Sbjct: 348 QMI 350
Score = 94 (38.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNI--- 505
VG++IGK G + +R+ SG+ I IS++ ER+ T+ GS ++ +A +I +N
Sbjct: 298 VGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKAKQMIYQNFKRE 357
Query: 506 EEFHKNQNKHL 516
EE KN+ +
Sbjct: 358 EERRKNEESRV 368
Score = 81 (33.6 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 19/71 (26%), Positives = 41/71 (57%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAF 498
+R ++ ++G++IG G +++L+ + S S P ER+V + G++D L+ +
Sbjct: 165 LRLLIPNSQMGTLIGSKGARIQQLQNNFNISMIASKSFLPGSNERLVELQGTVDDLYDSL 224
Query: 499 SLITKN-IEEF 508
+I++ IE+F
Sbjct: 225 RIISRCLIEDF 235
Score = 58 (25.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPD 319
+ +PN +G +IG G +I +++ + I + N+R + + GT D
Sbjct: 167 LLIPNSQMGTLIGSKGARIQQLQ--NNFNISMIASKSFLPGSNERLVELQGTVD 218
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 141 (54.7 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 459
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 460 QYLITQRI 467
Score = 141 (54.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 459
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 460 QYLITQRI 467
Score = 131 (51.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 61 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 120
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 121 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWV 180
Query: 114 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 169
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 181 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 235
Query: 170 PGLIGNQFG 178
P N G
Sbjct: 236 PVANSNPTG 244
Score = 131 (51.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 61 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 120
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 121 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWV 180
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 614
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 181 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 235
Query: 615 PGLIGNQFG 623
P N G
Sbjct: 236 PVANSNPTG 244
Score = 103 (41.3 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G +
Sbjct: 147 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNR 206
Query: 496 RAFSLITKNIEE 507
+A LI + I+E
Sbjct: 207 KAVELIIQKIQE 218
Score = 85 (35.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 208
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 209 VELIIQKIQ 217
Score = 85 (35.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 208
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 209 VELIIQKIQ 217
Score = 84 (34.6 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL 108
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 408 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 467
Score = 56 (24.8 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 423 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 463
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 141 (54.7 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 459
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 460 QYLITQRI 467
Score = 141 (54.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 459
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 460 QYLITQRI 467
Score = 131 (51.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 61 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 120
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 121 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWV 180
Query: 114 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 169
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 181 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 235
Query: 170 PGLIGNQFG 178
P N G
Sbjct: 236 PVANSNPTG 244
Score = 131 (51.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 61 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 120
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 121 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWV 180
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 614
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 181 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 235
Query: 615 PGLIGNQFG 623
P N G
Sbjct: 236 PVANSNPTG 244
Score = 103 (41.3 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G +
Sbjct: 147 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNR 206
Query: 496 RAFSLITKNIEE 507
+A LI + I+E
Sbjct: 207 KAVELIIQKIQE 218
Score = 85 (35.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 208
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 209 VELIIQKIQ 217
Score = 85 (35.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 208
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 209 VELIIQKIQ 217
Score = 84 (34.6 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL 108
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 408 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 467
Score = 56 (24.8 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 423 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 463
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 141 (54.7 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 401 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 460
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 461 QYLITQRI 468
Score = 141 (54.7 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 401 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 460
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 461 QYLITQRI 468
Score = 131 (51.2 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 121
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 122 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWV 181
Query: 114 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 169
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 182 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 236
Query: 170 PGLIGNQFG 178
P N G
Sbjct: 237 PVANSNPTG 245
Score = 131 (51.2 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 62 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 121
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 122 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWV 181
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 614
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 182 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 236
Query: 615 PGLIGNQFG 623
P N G
Sbjct: 237 PVANSNPTG 245
Score = 102 (41.0 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G +
Sbjct: 148 KQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNR 207
Query: 496 RAFSLITKNIEE 507
+A LI + I+E
Sbjct: 208 KAVELIIQKIQE 219
Score = 85 (35.0 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 109
Score = 84 (34.6 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 151 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 209
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 210 VELIIQKIQ 218
Score = 84 (34.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 151 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 209
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 210 VELIIQKIQ 218
Score = 77 (32.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 409 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 468
Score = 56 (24.8 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 424 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 464
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 161 (61.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 49/183 (26%), Positives = 83/183 (45%)
Query: 425 PQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERI 484
P+ N+ + T R ++Q + G++IGK+ +K LR + + I + DSS PE I
Sbjct: 2 PEKQNFKRSRNTDEMVESRILLQSENAGAVIGKN---IKALRTDYSASISVPDSSGPEHI 58
Query: 485 VTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXX 544
+++ + ++ I +EE +H G+ +L L++ S
Sbjct: 59 LSIGADIKTIGEILRKIVPTLEEC-----QHYRGSDFD--CELGLLIQQSLAGGIIGVKG 111
Query: 545 XXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIP 604
RE + +V + P+ST+R V I G PD V + I I ++ +SP KG P
Sbjct: 112 AKVKELRENTQTTVKRFQEWCPHSTDRVVLIGGKPDRVVECIKIIPDLVSESPIKGRAQP 171
Query: 605 YRP 607
Y P
Sbjct: 172 YDP 174
Score = 146 (56.5 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 45/162 (27%), Positives = 75/162 (46%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q + G++IGK+ +K LR + + I + DSS PE I+++ + ++ I +
Sbjct: 23 LQSENAGAVIGKN---IKALRTDYSASISVPDSSGPEHILSIGADIKTIGEILRKIVPTL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE +H G+ +L L++ S RE + +V +
Sbjct: 80 EEC-----QHYRGSDFD--CELGLLIQQSLAGGIIGVKGAKVKELRENTQTTVKRFQEWC 132
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 133 PHSTDRVVLIGGKPDRVVECIKIIPDLVSESPIKGRAQPYDP 174
Score = 119 (46.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P +L G++IG+GG +I +I SGA I+ DR I +TGT D I A
Sbjct: 302 QITIPKDLTGSIIGEGGQRIKQICHESGASIK----TDELEGSEDRIIIITGTQDQIQNA 357
Query: 770 QYLINMSVE 778
QYL+ SV+
Sbjct: 358 QYLLQNSVK 366
Score = 119 (46.9 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P +L G++IG+GG +I +I SGA I+ DR I +TGT D I A
Sbjct: 302 QITIPKDLTGSIIGEGGQRIKQICHESGASIK----TDELEGSEDRIIIITGTQDQIQNA 357
Query: 325 QYLINMSVE 333
QYL+ SV+
Sbjct: 358 QYLLQNSVK 366
Score = 91 (37.1 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD-SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
GSIIG+ G+ +K++ ESG+ I + + +RI+ + G+ D + A L+ +++++
Sbjct: 311 GSIIGEGGQRIKQICHESGASIKTDELEGSEDRIIIITGTQDQIQNAQYLLQNSVKQY 368
Score = 55 (24.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
+ + L G +IG G K+ E+R+ + ++ DR + + G PD +
Sbjct: 96 LLIQQSLAGGIIGVKGAKVKELRENTQTTVK--RFQEWCPHSTDRVVLIGGKPDRV 149
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 133 (51.9 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP +IGA++G G + EI+ +SGA ++I +R +T+TG P AIA AQYL
Sbjct: 523 VPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYL 582
Query: 773 INMSV 777
I +
Sbjct: 583 IEQKI 587
Score = 133 (51.9 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP +IGA++G G + EI+ +SGA ++I +R +T+TG P AIA AQYL
Sbjct: 523 VPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYL 582
Query: 328 INMSV 332
I +
Sbjct: 583 IEQKI 587
Score = 120 (47.3 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 41/171 (23%), Positives = 76/171 (44%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS-----STPERIVTVIGSMDSLFR 496
M+ ++ G+IIGK GET+ L++++G+++ +S S T ER+ + GS +++
Sbjct: 101 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMV 160
Query: 497 AFSLITKNIEEFHKNQNKHLGGNG---ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRET 553
I I E NK + + + + Q++++VP S +E
Sbjct: 161 VMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEE 220
Query: 554 SGASVYVASDMLPNST-EREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603
SG+ V ++ S ER + I G + A I +V+ P G +
Sbjct: 221 SGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCL 271
Score = 119 (46.9 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 40/161 (24%), Positives = 72/161 (44%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS-----STPERIVTVIGSMDSLFRAFSLITKNIE 61
G+IIGK GET+ L++++G+++ +S S T ER+ + GS +++ I I
Sbjct: 111 GAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIR 170
Query: 62 EFHKNQNKHLGGNG---ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD 118
E NK + + + + Q++++VP S +E SG+ V ++
Sbjct: 171 EKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQK 230
Query: 119 MLPNST-EREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 158
S ER + I G + A I +V+ P G +
Sbjct: 231 PTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCL 271
Score = 111 (44.1 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS----DSSTPERIVTVIG 489
QT ++++ ++ G IIGK G +K+++EESGS + IS D S ER +T+IG
Sbjct: 186 QTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIG 245
Query: 490 SMDSLFRAFSLITKNIEE 507
++ A +I I E
Sbjct: 246 DKENNKNACKMILSKIVE 263
Score = 87 (35.7 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP GA+IGKGG I ++K +GA +++ +R +TG+ +AI +
Sbjct: 102 KILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVV 161
Query: 325 QYLI 328
I
Sbjct: 162 MEFI 165
Score = 82 (33.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
+G+I+G SG ++ +++ SG+ + IS T RIVT+ G ++ +A LI + I
Sbjct: 528 IGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKI 587
Query: 506 EE 507
E
Sbjct: 588 NE 589
Score = 78 (32.5 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTG 316
++ VPN G +IGKGG I +I++ SG+ ++I +R IT+ G
Sbjct: 195 KILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSL-QERCITIIG 245
Score = 55 (24.4 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVASDML--PNSTEREVNIKGVPDAVTQAIYQI 589
+ SGA+V ++ + P + R V I G P A+ +A Y I
Sbjct: 543 QHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLI 583
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 138 (53.6 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 39/140 (27%), Positives = 68/140 (48%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S + ++ +PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDVDGNSTVQEIP--IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 138 (53.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 39/140 (27%), Positives = 68/140 (48%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S + ++ +PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDVDGNSTVQEIP--IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 113 (44.8 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQA 137
Query: 325 QYLINMSVELLRANLNGEGGGESNMDDFSSDNNLP 359
+ L+ V+ R NG G +++D S+ +P
Sbjct: 138 KRLLGQIVDRCR---NGPGF-HNDVDGNSTVQEIP 168
Score = 99 (39.9 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIEVARH 419
Query: 772 LINMSV 777
LI+ V
Sbjct: 420 LIDEKV 425
Score = 99 (39.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIEVARH 419
Query: 327 LINMSV 332
LI+ V
Sbjct: 420 LIDEKV 425
Score = 94 (38.1 bits), Expect = 7.2e-14, Sum P(3) = 7.2e-14
Identities = 38/169 (22%), Positives = 69/169 (40%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G + +VG +IGK GET+K+L+E +G K + I D P +
Sbjct: 151 GPGFHN-DVDGNSTVQEIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGAD 209
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXX 540
+ + + G + +A ++ + I E + + + G+ S++ + + VP
Sbjct: 210 KPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVI 269
Query: 541 XXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
+ +G + D S ER + G PD A + I
Sbjct: 270 GRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAAHVI 317
Score = 91 (37.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 34/146 (23%), Positives = 63/146 (43%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNI 60
+VG +IGK GET+K+L+E +G K + I D P ++ + + G + +A ++ + I
Sbjct: 173 KVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEII 232
Query: 61 EEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD 118
E + + + G+ S++ + + VP + +G + D
Sbjct: 233 REKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD 292
Query: 119 MLPNSTEREVNIKGVPDAVTQAIYQI 144
S ER + G PD A + I
Sbjct: 293 D-GISPERAAQVMGPPDRCQHAAHVI 317
Score = 89 (36.4 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IG++GE +KK++ ++G +I D +PER V+G D A +I++ I
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELI 321
Score = 89 (36.4 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IG++GE +KK++ ++G +I D +PER V+G D A +I++ I
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELI 321
Score = 81 (33.6 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDVDGNSTVQEIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG P + A+ ++ +E++R + G DFSS
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRG--DFSS 249
Score = 75 (31.5 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 432 NIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVT 486
++ T G + + + + + G +IGK GE +K + ++SG+ + + + P RI T
Sbjct: 347 SVGTPGGIQEVTYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFT 406
Query: 487 VIGSMDSLFRAFSLITKNI 505
+ G + A LI + +
Sbjct: 407 IRGLPPQIEVARHLIDEKV 425
Score = 68 (29.0 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 325 QYLINMSVELLRANLNGEGG 344
++I+ + L +G GG
Sbjct: 314 AHVISELI-LTAQERDGFGG 332
Score = 68 (29.0 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 770 QYLINMSVELLRANLNGEGG 789
++I+ + L +G GG
Sbjct: 314 AHVISELI-LTAQERDGFGG 332
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 160 (61.4 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 95 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 151
Query: 310 RTITMTGTPDAIALAQYLINM 330
R +T+TG+ +I+LAQYLIN+
Sbjct: 152 RQVTITGSAASISLAQYLINV 172
Score = 160 (61.4 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
G S E+T+PN+LIG +IG+ G KI EIR++SGA I+I D
Sbjct: 95 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGST---D 151
Query: 755 RTITMTGTPDAIALAQYLINM 775
R +T+TG+ +I+LAQYLIN+
Sbjct: 152 RQVTITGSAASISLAQYLINV 172
Score = 79 (32.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G IIG+ G + ++R+ SG++I I++ + +R VT+ GS S+ A LI
Sbjct: 118 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 170
Score = 74 (31.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 149 VDSPPKGATIPYRPLPQNA 167
++SPPKG TIPYRP P ++
Sbjct: 2 LESPPKGVTIPYRPKPSSS 20
Score = 74 (31.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 594 VDSPPKGATIPYRPLPQNA 612
++SPPKG TIPYRP P ++
Sbjct: 2 LESPPKGVTIPYRPKPSSS 20
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 138 (53.6 bits), Expect = 5.5e-16, Sum P(3) = 5.5e-16
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 413 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAA 472
Query: 770 QYLINMSV 777
QYLI+ +
Sbjct: 473 QYLISQRI 480
Score = 138 (53.6 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P A A
Sbjct: 413 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAA 472
Query: 325 QYLINMSV 332
QYLI+ +
Sbjct: 473 QYLISQRI 480
Score = 122 (48.0 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 42/165 (25%), Positives = 77/165 (46%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L + I + +
Sbjct: 69 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVR 128
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E ++ K + ++ Q +LIVP S E SGA V
Sbjct: 129 EMPQSSQKTEPVSILQPQTTVNPDRIKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 188
Query: 114 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 157
++ N ER V + G P+ +A+ +I + + P+ ++
Sbjct: 189 QLSQKPEGINLQERVVTVSGEPEQNRKAV-EIIVQKIQEDPQSSS 232
Score = 122 (48.0 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 42/165 (25%), Positives = 77/165 (46%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L + I + +
Sbjct: 69 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVR 128
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E ++ K + ++ Q +LIVP S E SGA V
Sbjct: 129 EMPQSSQKTEPVSILQPQTTVNPDRIKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWV 188
Query: 559 YVASDMLP-NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 602
++ N ER V + G P+ +A+ +I + + P+ ++
Sbjct: 189 QLSQKPEGINLQERVVTVSGEPEQNRKAV-EIIVQKIQEDPQSSS 232
Score = 99 (39.9 bits), Expect = 5.5e-16, Sum P(3) = 5.5e-16
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++ + I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G +
Sbjct: 155 KQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQNR 214
Query: 496 RAFSLITKNIEE 507
+A +I + I+E
Sbjct: 215 KAVEIIVQKIQE 226
Score = 85 (35.0 bits), Expect = 5.5e-16, Sum P(3) = 5.5e-16
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 60 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 116
Score = 83 (34.3 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 158 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQNRKA 216
Query: 325 QYLINMSVE 333
+I ++
Sbjct: 217 VEIIVQKIQ 225
Score = 83 (34.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 158 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQNRKA 216
Query: 770 QYLINMSVE 778
+I ++
Sbjct: 217 VEIIVQKIQ 225
Score = 76 (31.8 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ GS + A LI++ I
Sbjct: 421 VGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 480
Score = 55 (24.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 436 QELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLI 476
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 143 (55.4 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S IQ +++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 143 (55.4 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S IQ +++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 109 (43.4 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQA 137
Query: 325 QYLINMSVELLRANLNGEG 343
+ L+ V+ R NG G
Sbjct: 138 KRLLGQIVDRCR---NGPG 153
Score = 101 (40.6 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 40/157 (25%), Positives = 68/157 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +PER V+G D A +I + I
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVINELILTA 324
Query: 509 HKNQN-------KHLG-GNGESQL-----IQ-LRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + G G G+ + +Q + VPA +C + S
Sbjct: 325 QERDGFGGLTVARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGDNIKSINQQS 384
Query: 555 GASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQI 589
GA V + + PN+ R I+G+P + A + I
Sbjct: 385 GAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLI 421
Score = 99 (39.9 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARH 419
Query: 772 LINMSV 777
LI+ V
Sbjct: 420 LIDEKV 425
Score = 99 (39.9 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARH 419
Query: 327 LINMSV 332
LI+ V
Sbjct: 420 LIDEKV 425
Score = 98 (39.6 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 41/171 (23%), Positives = 70/171 (40%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G ++ +VG +IGK GET+K+L+E +G K + I D P +
Sbjct: 151 GPGFHN-DIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGAD 209
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGE-SQLI---QLRLIVPASQCXX 538
+ + + G + +A ++ + I E K+Q G G+ S + + + VP
Sbjct: 210 KPLRITGDPFKVQQAREMVLEIIRE--KDQADFRGVRGDFSARVGGGSIEVSVPRFAVGI 267
Query: 539 XXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
+ +G + D S ER + G PD A + I
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAAHVI 317
Score = 78 (32.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 752
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 753 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 799
D+ + +TG P + A+ ++ +E++R + G DFS+
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRG--DFSA 249
Score = 78 (32.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG P + A+ ++ +E++R + G DFS+
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRG--DFSA 249
Score = 73 (30.8 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 325 QYLINMSVELLRANLNGEGG 344
++IN + L +G GG
Sbjct: 314 AHVINELI-LTAQERDGFGG 332
Score = 73 (30.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 770 QYLINMSVELLRANLNGEGG 789
++IN + L +G GG
Sbjct: 314 AHVINELI-LTAQERDGFGG 332
Score = 72 (30.4 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 437 GVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVTVIGSM 491
GVQ + + + + G +IGK G+ +K + ++SG+ + + + P RI T+ G
Sbjct: 353 GVQE-ITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIP 411
Query: 492 DSLFRAFSLITKNI 505
+ A LI + +
Sbjct: 412 QQIEVARHLIDEKV 425
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 136 (52.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 46/172 (26%), Positives = 82/172 (47%)
Query: 425 PQGPNYANIQTTGVQRRMRHIMQGKE------VGSIIGKSGETVKKLREESGSKIYIS-- 476
PQ ++ N Q + ++ R +M + VG IIG+ GE + ++++ESG KI I+
Sbjct: 78 PQNDSFGN-QLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPA 136
Query: 477 -DSS-TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPAS 534
DS PER + G+ +S+ A L+ + +E+ H G+G +Q +++PAS
Sbjct: 137 LDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFH-HGDGPGNAVQ-EIMIPAS 194
Query: 535 QCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS-TEREVNIKGVPDAVTQA 585
+ +E +G + + D N+ ++ + I G P V QA
Sbjct: 195 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQA 246
Score = 131 (51.2 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 40/140 (28%), Positives = 69/140 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS-TPERIVTVIGSMDSLFRAFSLITKNIE 61
VG IIG+ GE + ++++ESG KI I+ DS PER + G+ +S+ A L+ + +E
Sbjct: 109 VGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLPERSCMLTGTPESVQSAKRLLDQIVE 168
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
+ H G+G +Q +++PAS+ +E +G + + D
Sbjct: 169 KGRPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ 226
Query: 122 NS-TEREVNIKGVPDAVTQA 140
N+ ++ + I G P V QA
Sbjct: 227 NTGADKPLRITGDPYKVQQA 246
Score = 105 (42.0 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 101 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLP-ERSCMLTGTPESVQSA 159
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 160 KRLLDQIVE 168
Score = 102 (41.0 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +TP+RI + G D A +IT +
Sbjct: 286 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 345
Query: 509 HKNQNKHLGGNG 520
GG G
Sbjct: 346 QAGNPGGPGGPG 357
Score = 88 (36.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 195 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 254
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 255 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 312
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P GGPG G
Sbjct: 313 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN-------PGGPGGPGGRGRGR 363
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 364 GQGNWNMGPP 373
Score = 87 (35.7 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQL 442
Query: 773 INMSV 777
I +
Sbjct: 443 IEEKI 447
Score = 87 (35.7 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQL 442
Query: 328 INMSV 332
I +
Sbjct: 443 IEEKI 447
Score = 84 (34.6 bits), Expect = 9.0e-14, Sum P(4) = 9.0e-14
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 365 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 422
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 423 NMKMFTIRGTPQQIDYARQLIEEKI 447
Score = 77 (32.2 bits), Expect = 9.0e-14, Sum P(4) = 9.0e-14
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 278 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 331
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 332 QHAAEIITDLLRSVQAGNPGG 352
Score = 77 (32.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 278 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 331
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 332 QHAAEIITDLLRSVQAGNPGG 352
Score = 73 (30.8 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 188 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 245
Query: 324 AQYLINMSVELLRANLNGEGGGESNMDDFSS 354
A+ ++ +EL+R +GG +++ S
Sbjct: 246 AKEMV---LELIR----DQGGFREVRNEYGS 269
Score = 73 (30.8 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 188 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 245
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 246 AKEMV---LELIR----DQGGFREVRNEYGS 269
Score = 53 (23.7 bits), Expect = 9.0e-14, Sum P(4) = 9.0e-14
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P GA + PY P P N G PG
Sbjct: 476 PGPGAPMGPYNPAPYNPGPPG 496
Score = 53 (23.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P GA + PY P P N G PG
Sbjct: 476 PGPGAPMGPYNPAPYNPGPPG 496
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 128 (50.1 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 38/140 (27%), Positives = 69/140 (49%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYIS-DSS-TPERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ES KI I+ DS +R T+ G+ +S+ +A L+ + ++
Sbjct: 93 KMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGTPESIEQAKRLLGQIVD 152
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGAS-VYVASDML 120
H +G S +Q +++PAS+ +E +G + + D +
Sbjct: 153 RCRNGPGFHSQMDGSSA-VQ-EILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPM 210
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P +++ + I G P V QA
Sbjct: 211 PTGSDKPLRISGDPYKVQQA 230
Score = 128 (50.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 38/140 (27%), Positives = 69/140 (49%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYIS-DSS-TPERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ES KI I+ DS +R T+ G+ +S+ +A L+ + ++
Sbjct: 93 KMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGTPESIEQAKRLLGQIVD 152
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGAS-VYVASDML 565
H +G S +Q +++PAS+ +E +G + + D +
Sbjct: 153 RCRNGPGFHSQMDGSSA-VQ-EILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPM 210
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P +++ + I G P V QA
Sbjct: 211 PTGSDKPLRISGDPYKVQQA 230
Score = 113 (44.8 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP++++G +IG+GG +I I+ S I+I DR T+TGTP++I A
Sbjct: 87 DFKVPDKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMM---DRPCTLTGTPESIEQA 143
Query: 325 QYLINMSVELLRANLNGEGGGESNMDDFSS 354
+ L+ V+ R NG G S MD S+
Sbjct: 144 KRLLGQIVDRCR---NGPGF-HSQMDGSSA 169
Score = 108 (43.1 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 50/208 (24%), Positives = 85/208 (40%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + + Q G ++ +VG +IGK G+T+K+L+E +G K I I D P +
Sbjct: 157 GPGFHS-QMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSD 215
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGE--SQL-IQLRLIVPASQCXXX 539
+ + + G + +A L+ + I E K+Q G + S+L + + VP
Sbjct: 216 KPLRISGDPYKVQQARELVVEIIRE--KDQGDFRSGRSDFGSRLGSSIDVAVPRFAVGIV 273
Query: 540 XXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQIC-LIMVDSPP 598
+ +G + D S +R + G P+ A++ I L+
Sbjct: 274 IGRNGEMIKKIQNDAGVRIQFKPDD-GISPDRVAQVMGQPERCQHAVHLINELVQTAQER 332
Query: 599 KGATIPYRPLPQNAG-GPGLIGNQFGMQ 625
G P P + G G IG G+Q
Sbjct: 333 DGFGGPLGPRGRGRGRGDWNIGTPGGLQ 360
Score = 107 (42.7 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 37/153 (24%), Positives = 67/153 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +P+R+ V+G + A LI + ++
Sbjct: 270 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPDRVAQVMGQPERCQHAVHLINELVQTA 329
Query: 509 HKNQN--KHLG--GNGESQ----------LIQLRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ LG G G + L ++ +PA +C + S
Sbjct: 330 QERDGFGGPLGPRGRGRGRGDWNIGTPGGLQEVTYTIPADKCGLVIGKGGETIKNINQQS 389
Query: 555 GASVYVASDMLPNSTE--REVNIKGVPDAVTQA 585
GA V + + PN+ R +I+G P + A
Sbjct: 390 GAHVELQRNPPPNTDPNVRTFSIRGSPQQMEMA 422
Score = 100 (40.3 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 46/185 (24%), Positives = 77/185 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNI 60
+VG +IGK G+T+K+L+E +G K I I D P ++ + + G + +A L+ + I
Sbjct: 179 KVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRISGDPYKVQQARELVVEII 238
Query: 61 EEFHKNQNKHLGGNGE--SQL-IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
E K+Q G + S+L + + VP + +G +
Sbjct: 239 RE--KDQGDFRSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 296
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQIC-LIMVDSPPKGATIPYRPLPQNAG-GPGLIGN 175
D S +R + G P+ A++ I L+ G P P + G G IG
Sbjct: 297 DD-GISPDRVAQVMGQPERCQHAVHLINELVQTAQERDGFGGPLGPRGRGRGRGDWNIGT 355
Query: 176 QFGMQ 180
G+Q
Sbjct: 356 PGGLQ 360
Score = 98 (39.6 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
T+P + G VIGKGG I I + SGA + + N RT ++ G+P + +A+
Sbjct: 365 TIPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQMEMARQ 424
Query: 772 LINMSVELLRANLNGEGGGES 792
LI+ + +G GG S
Sbjct: 425 LIDDKI-----GASGMGGNSS 440
Score = 98 (39.6 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
T+P + G VIGKGG I I + SGA + + N RT ++ G+P + +A+
Sbjct: 365 TIPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQMEMARQ 424
Query: 327 LINMSVELLRANLNGEGGGES 347
LI+ + +G GG S
Sbjct: 425 LIDDKI-----GASGMGGNSS 440
Score = 93 (37.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXN 753
+GP E+ +P +G VIGKGG I ++++ +G + I +
Sbjct: 156 NGPGFHSQMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKM-IMIQDDPMPTGS 214
Query: 754 DRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 799
D+ + ++G P + A+ L+ VE++R +G S DF S
Sbjct: 215 DKPLRISGDPYKVQQARELV---VEIIREK--DQGDFRSGRSDFGS 255
Score = 93 (37.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXN 308
+GP E+ +P +G VIGKGG I ++++ +G + I +
Sbjct: 156 NGPGFHSQMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKM-IMIQDDPMPTGS 214
Query: 309 DRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + ++G P + A+ L+ VE++R +G S DF S
Sbjct: 215 DKPLRISGDPYKVQQARELV---VEIIREK--DQGDFRSGRSDFGS 255
Score = 88 (36.0 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 432 NIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVT 486
NI T G + + + + + G +IGK GET+K + ++SG+ + + + P R +
Sbjct: 352 NIGTPGGLQEVTYTIPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFS 411
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLG 517
+ GS + A LI I N G
Sbjct: 412 IRGSPQQMEMARQLIDDKIGASGMGGNSSFG 442
Score = 73 (30.8 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ DR + G P+ A
Sbjct: 262 DVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---DRVAQVMGQPERCQHA 318
Query: 325 QYLINMSVELLRANLNGEGG 344
+LIN V+ + +G GG
Sbjct: 319 VHLINELVQTAQER-DGFGG 337
Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ DR + G P+ A
Sbjct: 262 DVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---DRVAQVMGQPERCQHA 318
Query: 770 QYLINMSVELLRANLNGEGG 789
+LIN V+ + +G GG
Sbjct: 319 VHLINELVQTAQER-DGFGG 337
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 158 (60.7 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 48/192 (25%), Positives = 81/192 (42%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++ K G+IIGK GE +K+LR E + + + DS+TPER+ TV ++ +
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDV 111
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+E+ E ++R++V S RE A + +
Sbjct: 112 LPRLED----------NFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIF 161
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 621
+ P ST+R + G V I ++ + + P KG+ PY LP P I +
Sbjct: 162 TGCAPGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPY--LPAFNYDPSNISDY 219
Query: 622 FGMQNSL-MGAP 632
G ++ G P
Sbjct: 220 GGFPGNMPAGGP 231
Score = 153 (58.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 47/188 (25%), Positives = 78/188 (41%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ K G+IIGK GE +K+LR E + + + DS+TPER+ TV ++ + +
Sbjct: 56 VSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDVLPRL 115
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
E+ E ++R++V S RE A + + +
Sbjct: 116 ED----------NFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCA 165
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQ 180
P ST+R + G V I ++ + + P KG+ PY LP P I + G
Sbjct: 166 PGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPY--LPAFNYDPSNISDYGGFP 223
Query: 181 NSL-MGAP 187
++ G P
Sbjct: 224 GNMPAGGP 231
Score = 110 (43.8 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P++L G +IG+GG +I IR+ SGA I + +R IT+ GT I A
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP----ERIITIKGTEQQIHSA 375
Query: 770 QYLINMSV 777
QYL+ V
Sbjct: 376 QYLLQQCV 383
Score = 110 (43.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P++L G +IG+GG +I IR+ SGA I + +R IT+ GT I A
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP----ERIITIKGTEQQIHSA 375
Query: 325 QYLINMSV 332
QYL+ V
Sbjct: 376 QYLLQQCV 383
Score = 105 (42.0 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-TPERIVTVIGSMDSLFRAFSLITKNIEEFHK 510
G+IIG+ GE + ++R+ESG++I + S+ PERI+T+ G+ + A L+ + + +
Sbjct: 329 GTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGTEQQIHSAQYLLQQCVRNSTQ 388
Query: 511 NQNKHLGGN 519
+ + GG+
Sbjct: 389 GRER-FGGS 396
Score = 58 (25.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
M V GA+IG+ G+KI E+R+ A ++I
Sbjct: 129 MLVHQSHAGALIGRNGSKIKELREKCSARLKI 160
Score = 53 (23.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
+ V ++ GA+IGKGG I +R A +++
Sbjct: 54 LLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV 85
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 158 (60.7 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 48/192 (25%), Positives = 81/192 (42%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++ K G+IIGK GE +K+LR E + + + DS+TPER+ TV ++ +
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDV 111
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+E+ E ++R++V S RE A + +
Sbjct: 112 LPRLED----------NFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIF 161
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQ 621
+ P ST+R + G V I ++ + + P KG+ PY LP P I +
Sbjct: 162 TGCAPGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPY--LPAFNYDPSNISDY 219
Query: 622 FGMQNSL-MGAP 632
G ++ G P
Sbjct: 220 GGFPGNMPAGGP 231
Score = 153 (58.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 47/188 (25%), Positives = 78/188 (41%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ K G+IIGK GE +K+LR E + + + DS+TPER+ TV ++ + +
Sbjct: 56 VSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDVLPRL 115
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
E+ E ++R++V S RE A + + +
Sbjct: 116 ED----------NFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCA 165
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQ 180
P ST+R + G V I ++ + + P KG+ PY LP P I + G
Sbjct: 166 PGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPY--LPAFNYDPSNISDYGGFP 223
Query: 181 NSL-MGAP 187
++ G P
Sbjct: 224 GNMPAGGP 231
Score = 110 (43.8 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++T+P++L G +IG+GG +I IR+ SGA I + +R IT+ GT I A
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP----ERIITIKGTEQQIHSA 375
Query: 770 QYLINMSV 777
QYL+ V
Sbjct: 376 QYLLQQCV 383
Score = 110 (43.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++T+P++L G +IG+GG +I IR+ SGA I + +R IT+ GT I A
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP----ERIITIKGTEQQIHSA 375
Query: 325 QYLINMSV 332
QYL+ V
Sbjct: 376 QYLLQQCV 383
Score = 105 (42.0 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-TPERIVTVIGSMDSLFRAFSLITKNIEEFHK 510
G+IIG+ GE + ++R+ESG++I + S+ PERI+T+ G+ + A L+ + + +
Sbjct: 329 GTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGTEQQIHSAQYLLQQCVRNSTQ 388
Query: 511 NQNKHLGGN 519
+ + GG+
Sbjct: 389 GRER-FGGS 396
Score = 58 (25.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
M V GA+IG+ G+KI E+R+ A ++I
Sbjct: 129 MLVHQSHAGALIGRNGSKIKELREKCSARLKI 160
Score = 53 (23.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
+ V ++ GA+IGKGG I +R A +++
Sbjct: 54 LLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV 85
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 201 (75.8 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 42/93 (45%), Positives = 64/93 (68%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + P+RI+T+ G +++F+AF++I
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPKRIITLAGPTNAIFKAFAMI 75
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPAS 534
+EE + + + RL+VPAS
Sbjct: 76 IDKLEEDISSSMTNSTA-ARRPPVTSRLVVPAS 107
Score = 196 (74.1 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/89 (46%), Positives = 61/89 (68%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GE+VKK+REESG++I IS+ + P+RI+T+ G +++F+AF++I +
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPKRIITLAGPTNAIFKAFAMIIDKL 79
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPAS 89
EE + + + RL+VPAS
Sbjct: 80 EEDISSSMTNSTA-ARRPPVTSRLVVPAS 107
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 143 (55.4 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S IQ +++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 143 (55.4 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S IQ +++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 109 (43.4 bits), Expect = 6.6e-14, Sum P(3) = 6.6e-14
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQA 137
Query: 325 QYLINMSVELLRANLNGEG 343
+ L+ V+ R NG G
Sbjct: 138 KRLLGQIVDRCR---NGPG 153
Score = 101 (40.6 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 40/157 (25%), Positives = 68/157 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +PER V+G D A +I + I
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVINELILTA 324
Query: 509 HKNQN-------KHLG-GNGESQL-----IQ-LRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + G G G+ + +Q + VPA +C + S
Sbjct: 325 QERDGFGGLTVARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGDNIKSINQQS 384
Query: 555 GASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQI 589
GA V + + PN+ R I+G+P + A + I
Sbjct: 385 GAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLI 421
Score = 99 (39.9 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARH 419
Query: 772 LINMSV 777
LI+ V
Sbjct: 420 LIDEKV 425
Score = 99 (39.9 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARH 419
Query: 327 LINMSV 332
LI+ V
Sbjct: 420 LIDEKV 425
Score = 98 (39.6 bits), Expect = 6.6e-14, Sum P(3) = 6.6e-14
Identities = 41/171 (23%), Positives = 70/171 (40%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G ++ +VG +IGK GET+K+L+E +G K + I D P +
Sbjct: 151 GPGFHN-DIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGAD 209
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGE-SQLI---QLRLIVPASQCXX 538
+ + + G + +A ++ + I E K+Q G G+ S + + + VP
Sbjct: 210 KPLRITGDPFKVQQAREMVLEIIRE--KDQADFRGVRGDFSARVGGGSIEVSVPRFAVGI 267
Query: 539 XXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
+ +G + D S ER + G PD A + I
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAAHVI 317
Score = 78 (32.5 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 752
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 753 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 799
D+ + +TG P + A+ ++ +E++R + G DFS+
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRG--DFSA 249
Score = 78 (32.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG P + A+ ++ +E++R + G DFS+
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRG--DFSA 249
Score = 73 (30.8 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 325 QYLINMSVELLRANLNGEGG 344
++IN + L +G GG
Sbjct: 314 AHVINELI-LTAQERDGFGG 332
Score = 73 (30.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 770 QYLINMSVELLRANLNGEGG 789
++IN + L +G GG
Sbjct: 314 AHVINELI-LTAQERDGFGG 332
Score = 72 (30.4 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 437 GVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVTVIGSM 491
GVQ + + + + G +IGK G+ +K + ++SG+ + + + P RI T+ G
Sbjct: 353 GVQE-ITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIP 411
Query: 492 DSLFRAFSLITKNI 505
+ A LI + +
Sbjct: 412 QQIEVARHLIDEKV 425
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 145 (56.1 bits), Expect = 9.5e-15, Sum P(3) = 9.5e-15
Identities = 42/140 (30%), Positives = 69/140 (49%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S IQ L++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 145 (56.1 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 42/140 (30%), Positives = 69/140 (49%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S IQ L++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 109 (43.4 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQA 137
Query: 325 QYLINMSVELLRANLNGEG 343
+ L+ V+ R NG G
Sbjct: 138 KRLLGQIVDRCR---NGPG 153
Score = 100 (40.3 bits), Expect = 9.5e-15, Sum P(3) = 9.5e-15
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARH 419
Query: 772 LINMSV 777
LI+ V
Sbjct: 420 LIDEKV 425
Score = 100 (40.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARH 419
Query: 327 LINMSV 332
LI+ V
Sbjct: 420 LIDEKV 425
Score = 99 (39.9 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 42/169 (24%), Positives = 74/169 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +PER V+G D A +I + I
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELILTA 324
Query: 509 HKNQ-------NKHLG-GNGESQL-----IQ-LRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + + G G G+ + IQ + VPA +C + S
Sbjct: 325 QEREILGGLTGTRGRGRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQS 384
Query: 555 GASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603
GA V + + PN T+ + I + A Q ++ ++D GA++
Sbjct: 385 GAHVELQRNPPPN-TDPNLRIFTIRGAPQQI--EVARHLIDEKVGGASL 430
Score = 89 (36.4 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G ++ +VG +IGK GET+K+L+E +G K + I D P +
Sbjct: 151 GPGFHN-DIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGAD 209
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEE 507
+ + + G + +A ++ + I E
Sbjct: 210 KPLRITGDPFKVQQAREMVLEIIRE 234
Score = 80 (33.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 752
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 753 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 799
D+ + +TG P + A+ ++ +E++R + G + DF+S
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRS--DFTS 249
Score = 80 (33.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG P + A+ ++ +E++R + G + DF+S
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRS--DFTS 249
Score = 79 (32.9 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 432 NIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVT 486
++ T G + + + + + G +IGK GE +K + ++SG+ + + + P RI T
Sbjct: 347 SVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFT 406
Query: 487 VIGSMDSLFRAFSLITKNI 505
+ G+ + A LI + +
Sbjct: 407 IRGAPQQIEVARHLIDEKV 425
Score = 67 (28.6 bits), Expect = 9.5e-15, Sum P(3) = 9.5e-15
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP ++G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 325 QYLIN 329
+IN
Sbjct: 314 ARIIN 318
Score = 67 (28.6 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP ++G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 770 QYLIN 774
+IN
Sbjct: 314 ARIIN 318
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 175 (66.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 49/179 (27%), Positives = 88/179 (49%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFS 499
+R + K I+G G T+ +++ E+ ++I IS++ PERIV V G+ D + +A+
Sbjct: 69 LRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDVAKAYG 128
Query: 500 LITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVY 559
+I + + E H N++ NGE I + L++P + S A ++
Sbjct: 129 MIVRALLEEHGNED-----NGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSAAKLF 183
Query: 560 VASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMV----DSPPKGA--TIPYRPLPQNA 612
+ + L S +R + I GVPDA+ A + I ++ +SP K +I Y+P N+
Sbjct: 184 ASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQFNS 242
Score = 174 (66.3 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 48/172 (27%), Positives = 85/172 (49%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIE 61
K I+G G T+ +++ E+ ++I IS++ PERIV V G+ D + +A+ +I + +
Sbjct: 76 KHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDVAKAYGMIVRALL 135
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
E H N++ NGE I + L++P + S A ++ + + L
Sbjct: 136 EEHGNED-----NGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSAAKLFASPNQLL 190
Query: 122 NSTEREVNIKGVPDAVTQAIYQICLIMV----DSPPKGA--TIPYRPLPQNA 167
S +R + I GVPDA+ A + I ++ +SP K +I Y+P N+
Sbjct: 191 LSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQFNS 242
Score = 113 (44.8 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ +P+ L+G +IGK G+++ EI +S A ++ NDR +T+ G PDAI +A
Sbjct: 153 LLIPHHLMGCIIGKRGSRLREIEDLSAA--KLFASPNQLLLSNDRILTINGVPDAIHIAT 210
Query: 326 YLINMSV 332
+ I+ ++
Sbjct: 211 FYISQTL 217
Score = 89 (36.4 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIE 506
K VG++IGK G+ + ++E +G I I D + ER +T+ G+ + A LI+ IE
Sbjct: 340 KFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLISNKIE 399
Query: 507 EFHKNQNK 514
N +
Sbjct: 400 IDRSNAER 407
Score = 75 (31.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ + + +G VIGK G I +++ +G I I ++R +T+ GT A A
Sbjct: 334 EIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGS---SERRLTIRGTFMASQAA 390
Query: 770 QYLINMSVELLRAN 783
LI+ +E+ R+N
Sbjct: 391 IMLISNKIEIDRSN 404
Score = 75 (31.5 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ + + +G VIGK G I +++ +G I I ++R +T+ GT A A
Sbjct: 334 EIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGS---SERRLTIRGTFMASQAA 390
Query: 325 QYLINMSVELLRAN 338
LI+ +E+ R+N
Sbjct: 391 IMLISNKIEIDRSN 404
Score = 49 (22.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 551 RETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E++G S+ + D + S+ER + I+G A AI I
Sbjct: 357 KESTGCSIII-QDPVEGSSERRLTIRGTFMASQAAIMLI 394
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 145 (56.1 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 42/140 (30%), Positives = 69/140 (49%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S IQ L++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 145 (56.1 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 42/140 (30%), Positives = 69/140 (49%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S IQ L++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDGNST-IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 109 (43.4 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQA 137
Query: 325 QYLINMSVELLRANLNGEG 343
+ L+ V+ R NG G
Sbjct: 138 KRLLGQIVDRCR---NGPG 153
Score = 100 (40.3 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARH 419
Query: 772 LINMSV 777
LI+ V
Sbjct: 420 LIDEKV 425
Score = 100 (40.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARH 419
Query: 327 LINMSV 332
LI+ V
Sbjct: 420 LIDEKV 425
Score = 95 (38.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 42/169 (24%), Positives = 73/169 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ +G +I D +PER V+G D A +I + I
Sbjct: 265 VGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELILTA 324
Query: 509 HKNQ-------NKHLG-GNGESQL-----IQ-LRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + + G G G+ + IQ + VPA +C + S
Sbjct: 325 QEREILGGLTGTRGRGRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQS 384
Query: 555 GASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603
GA V + + PN T+ + I + A Q ++ ++D GA++
Sbjct: 385 GAHVELQRNPPPN-TDPNLRIFTIRGAPQQI--EVARHLIDEKVGGASL 430
Score = 89 (36.4 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G ++ +VG +IGK GET+K+L+E +G K + I D P +
Sbjct: 151 GPGFHN-DIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGAD 209
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEE 507
+ + + G + +A ++ + I E
Sbjct: 210 KPLRITGDPFKVQQAREMVLEIIRE 234
Score = 80 (33.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 752
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 753 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 799
D+ + +TG P + A+ ++ +E++R + G + DF+S
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRS--DFTS 249
Score = 80 (33.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG P + A+ ++ +E++R + G + DF+S
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRS--DFTS 249
Score = 79 (32.9 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 432 NIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVT 486
++ T G + + + + + G +IGK GE +K + ++SG+ + + + P RI T
Sbjct: 347 SVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFT 406
Query: 487 VIGSMDSLFRAFSLITKNI 505
+ G+ + A LI + +
Sbjct: 407 IRGAPQQIEVARHLIDEKV 425
Score = 66 (28.3 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP ++G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 325 QYLIN 329
+IN
Sbjct: 314 ARIIN 318
Score = 66 (28.3 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP ++G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 770 QYLIN 774
+IN
Sbjct: 314 ARIIN 318
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 146 (56.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 42/140 (30%), Positives = 69/140 (49%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S IQ L++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDVDGSST-IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 146 (56.5 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 42/140 (30%), Positives = 69/140 (49%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S IQ L++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDVDGSST-IQ-ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL 204
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G P V QA
Sbjct: 205 PTGADKPLRITGDPFKVQQA 224
Score = 110 (43.8 bits), Expect = 8.1e-14, Sum P(3) = 8.1e-14
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQA 137
Query: 325 QYLINMSVELLRANLNGEGGGESNMDDFSSDNNL--PSS 361
+ L+ V+ R NG G +++D S+ L P+S
Sbjct: 138 KRLLGQIVDRCR---NGPGF-HNDVDGSSTIQELLIPAS 172
Score = 105 (42.0 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 42/157 (26%), Positives = 69/157 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +PER V+G D A +I++ I
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELILTA 324
Query: 509 HKNQN-------KHLG-GNGESQL-----IQ-LRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + G G G+ + IQ + VPA +C + S
Sbjct: 325 QERDGFGGLAVARGRGRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQS 384
Query: 555 GASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQI 589
GA V + + PN+ R I+GVP + A + I
Sbjct: 385 GAHVELQRNPPPNTDPGLRVFTIRGVPQQIEVARHLI 421
Score = 100 (40.3 bits), Expect = 8.1e-14, Sum P(3) = 8.1e-14
Identities = 38/169 (22%), Positives = 70/169 (41%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G ++ +VG +IGK GET+K+L+E +G K + I D P +
Sbjct: 151 GPGFHN-DVDGSSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGAD 209
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXX 540
+ + + G + +A ++ + I E + + + G+ S++ + + VP
Sbjct: 210 KPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVI 269
Query: 541 XXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
+ +G + D S ER + G PD A + I
Sbjct: 270 GRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAAHVI 317
Score = 95 (38.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEVARH 419
Query: 772 LINMSV 777
LI+ V
Sbjct: 420 LIDEKV 425
Score = 95 (38.5 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + R T+ G P I +A++
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEVARH 419
Query: 327 LINMSV 332
LI+ V
Sbjct: 420 LIDEKV 425
Score = 83 (34.3 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDVDGSSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG P + A+ ++ +E++R + G DFSS
Sbjct: 209 -DKPLRITGDPFKVQQAREMV---LEIIREKDQADFRGVRG--DFSS 249
Score = 75 (31.5 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 432 NIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVT 486
++ T G + + + + + G +IGK GE +K + ++SG+ + + + P R+ T
Sbjct: 347 SVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFT 406
Query: 487 VIGSMDSLFRAFSLITKNI 505
+ G + A LI + +
Sbjct: 407 IRGVPQQIEVARHLIDEKV 425
Score = 68 (29.0 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 325 QYLINMSVELLRANLNGEGG 344
++I+ + L +G GG
Sbjct: 314 AHVISELI-LTAQERDGFGG 332
Score = 68 (29.0 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 770 QYLINMSVELLRANLNGEGG 789
++I+ + L +G GG
Sbjct: 314 AHVISELI-LTAQERDGFGG 332
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 140 (54.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 45/170 (26%), Positives = 81/170 (47%)
Query: 425 PQGPNYANIQTTGVQRRMRHIMQGKE------VGSIIGKSGETVKKLREESGSKIYISDS 478
PQ ++ N Q + ++ R +M + VG IIG+ GE + ++++ESG KI I+
Sbjct: 78 PQNDSFGN-QLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD 136
Query: 479 S--TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQC 536
S PER + G+ +S+ A L+ + +E+ H G+G +Q +++PAS+
Sbjct: 137 SGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFH-HGDGPGNAVQ-EIMIPASKA 194
Query: 537 XXXXXXXXXXXXXXRETSGASVYVASDMLPNS-TEREVNIKGVPDAVTQA 585
+E +G + + D N+ ++ + I G P V QA
Sbjct: 195 GLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQA 244
Score = 135 (52.6 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 109 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 168
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 169 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 226
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 227 GADKPLRITGDPYKVQQA 244
Score = 102 (41.0 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +TP+RI + G D A +IT +
Sbjct: 268 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 327
Query: 509 HKNQNKHLGGNG 520
GG G
Sbjct: 328 QAGNPGGPGGPG 339
Score = 102 (41.0 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 101 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 157
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 158 KRLLDQIVE 166
Score = 102 (41.0 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG +IG++GE +KK++ ++G +I D +TP+RI + G D A +IT +
Sbjct: 268 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 327
Query: 64 HKNQNKHLGGNG 75
GG G
Sbjct: 328 QAGNPGGPGGPG 339
Score = 80 (33.2 bits), Expect = 7.4e-13, Sum P(4) = 7.4e-13
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 260 EVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 313
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 314 QHAAEIITDLLRSVQAGNPGG 334
Score = 80 (33.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 260 EVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 313
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 314 QHAAEIITDLLRSVQAGNPGG 334
Score = 72 (30.4 bits), Expect = 6.6e-08, Sum P(4) = 6.6e-08
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 186 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 243
Query: 324 AQYLINMSVELLR 336
A+ ++ +EL+R
Sbjct: 244 AKEMV---LELIR 253
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 186 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 243
Query: 769 AQYLINMSVELLR 781
A+ ++ +EL+R
Sbjct: 244 AKEMV---LELIR 253
Score = 71 (30.1 bits), Expect = 8.3e-08, Sum P(4) = 8.3e-08
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD 32
+ G +IGK GET+K+L+E +G K + I D
Sbjct: 193 KAGLVIGKGGETIKQLQERAGVKMVMIQD 221
Score = 70 (29.7 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 713 VPNELIGAVIGKG-----GTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
VP G +IGKG G I I + SGA I + N + T+ GTP I
Sbjct: 365 VPTGKTGLIIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQID 424
Query: 768 LAQYLINMSV 777
A+ LI +
Sbjct: 425 YARQLIEEKI 434
Score = 70 (29.7 bits), Expect = 1.4e-09, Sum P(4) = 1.4e-09
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 268 VPNELIGAVIGKG-----GTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
VP G +IGKG G I I + SGA I + N + T+ GTP I
Sbjct: 365 VPTGKTGLIIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQID 424
Query: 323 LAQYLINMSV 332
A+ LI +
Sbjct: 425 YARQLIEEKI 434
Score = 67 (28.6 bits), Expect = 7.4e-13, Sum P(4) = 7.4e-13
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKS-----GETVKKLREESGSKIYISDSST 480
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + +
Sbjct: 347 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGNVSLRGETIKSISQQSGARIELQRNPP 404
Query: 481 PE-----RIVTVIGSMDSLFRAFSLITKNI 505
P ++ T+ G+ + A LI + I
Sbjct: 405 PNADPNMKMFTIRGTPQQIDYARQLIEEKI 434
Score = 53 (23.7 bits), Expect = 7.4e-13, Sum P(4) = 7.4e-13
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P GA + PY P P N G PG
Sbjct: 463 PGPGAPMGPYNPAPYNPGPPG 483
Score = 53 (23.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P GA + PY P P N G PG
Sbjct: 463 PGPGAPMGPYNPAPYNPGPPG 483
Score = 44 (20.5 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
P GGPG G G N MG P
Sbjct: 332 PGGPGGPGGRGRGRGQGNWNMGPP 355
Score = 44 (20.5 bits), Expect = 1.4e-09, Sum P(4) = 1.4e-09
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 164 PQNAGGPGLIGNQFGMQNSLMGAP 187
P GGPG G G N MG P
Sbjct: 332 PGGPGGPGGRGRGRGQGNWNMGPP 355
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 135 (52.6 bits), Expect = 3.5e-14, Sum P(4) = 3.5e-14
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 167
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 168 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 225
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 226 GADKPLRITGDPYKVQQA 243
Score = 135 (52.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 167
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 168 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 225
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 226 GADKPLRITGDPYKVQQA 243
Score = 102 (41.0 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 100 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 156
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 157 KRLLDQIVE 165
Score = 88 (36.0 bits), Expect = 3.5e-14, Sum P(4) = 3.5e-14
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + S P
Sbjct: 361 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADP 418
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 419 NMKLFTIRGTPQQIDYARQLIEEKI 443
Score = 88 (36.0 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438
Query: 773 INMSV 777
I +
Sbjct: 439 IEEKI 443
Score = 88 (36.0 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438
Query: 328 INMSV 332
I +
Sbjct: 439 IEEKI 443
Score = 80 (33.2 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 47/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 178 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 237
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 238 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 295
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + +R I G PD A +I ++ S G P P
Sbjct: 296 KIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 350
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 351 -----GPGGRGRGRGQGNWNMGPP 369
Score = 78 (32.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 192 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 251
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 252 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 309
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P P GPG G
Sbjct: 310 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 359
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 360 GQGNWNMGPP 369
Score = 77 (32.2 bits), Expect = 3.5e-14, Sum P(4) = 3.5e-14
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 275 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 328
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 329 QHAAEIITDLLRSVQAGNPGG 349
Score = 77 (32.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 275 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 328
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 329 QHAAEIITDLLRSVQAGNPGG 349
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 185 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 242
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 243 AKEMV---LELIR----DQGGFREVRNEYGS 266
Score = 73 (30.8 bits), Expect = 0.00074, Sum P(3) = 0.00073
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 323
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 185 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 242
Query: 324 AQYLINMSVELLRANLNGEGGGESNMDDFSS 354
A+ ++ +EL+R +GG +++ S
Sbjct: 243 AKEMV---LELIR----DQGGFREVRNEYGS 266
Score = 49 (22.3 bits), Expect = 3.5e-14, Sum P(4) = 3.5e-14
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 471 PGPGTPMGPYNPAPYNPGPPG 491
Score = 49 (22.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 471 PGPGTPMGPYNPAPYNPGPPG 491
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 174 (66.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 52/178 (29%), Positives = 82/178 (46%)
Query: 437 GVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS---DSSTPERIVTVIGSMDS 493
G R ++ VG IIGK G+T+K+L E+G+KI D STPER ++G+ D
Sbjct: 246 GASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQ 305
Query: 494 LFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQ-----LRLIVPASQCXXXXXXXXXXXX 548
++RA IT+ +++ Q GGN ++ + VPA++C
Sbjct: 306 IYRATERITELVKKSTMQQGG--GGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIK 363
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYR 606
SGA ++ D N+ E+ IKG A+ A + I + + D P P+R
Sbjct: 364 QINSESGAHCELSRDPTGNADEKVFVIKGGKRAIEHAKHLIRIKVGDIAPN---TPFR 418
Score = 169 (64.5 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 50/164 (30%), Positives = 78/164 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG IIGK G+T+K+L E+G+KI D STPER ++G+ D ++RA IT+ +++
Sbjct: 260 VGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATERITELVKK 319
Query: 63 FHKNQNKHLGGNGESQLIQ-----LRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
Q GGN ++ + VPA++C SGA ++
Sbjct: 320 STMQQGG--GGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSR 377
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYR 161
D N+ E+ IKG A+ A + I + + D P P+R
Sbjct: 378 DPTGNADEKVFVIKGGKRAIEHAKHLIRIKVGDIAPN---TPFR 418
Score = 99 (39.9 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 40/151 (26%), Positives = 63/151 (41%)
Query: 452 GSIIGKSGETVKKLREESGSKIY-------ISDSSTPERIVTVIGSMDSLFRAFSLITKN 504
G IIGKSG+T+++L+E+SG K+ +SD S P RI G + A L+ +
Sbjct: 167 GLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRIT---GDPQKIELAKQLVAEI 223
Query: 505 IEEFHKN------QNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+ Q H GG G + + ++VP S +G +
Sbjct: 224 LNSGGDGNGGSGLQMHHAGGGGGASA-RGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKI 282
Query: 559 YVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
D P++ ER I G D + +A +I
Sbjct: 283 QFKPDDDPSTPERCAVIMGTRDQIYRATERI 313
Score = 99 (39.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 40/151 (26%), Positives = 63/151 (41%)
Query: 7 GSIIGKSGETVKKLREESGSKIY-------ISDSSTPERIVTVIGSMDSLFRAFSLITKN 59
G IIGKSG+T+++L+E+SG K+ +SD S P RI G + A L+ +
Sbjct: 167 GLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRIT---GDPQKIELAKQLVAEI 223
Query: 60 IEEFHKN------QNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
+ Q H GG G + + ++VP S +G +
Sbjct: 224 LNSGGDGNGGSGLQMHHAGGGGGASA-RGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKI 282
Query: 114 YVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144
D P++ ER I G D + +A +I
Sbjct: 283 QFKPDDDPSTPERCAVIMGTRDQIYRATERI 313
Score = 89 (36.4 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 29/139 (20%), Positives = 63/139 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 62
VG +IG+ G ++ ++ ++G ++ +S + P R+VT+ GS ++ A LI + +
Sbjct: 81 VGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLINEVVAR 140
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 122
+ ++ G +Q + + +P ++C +E SG + + D
Sbjct: 141 SQNPRPQY--GFPRAQTT-IDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSV 197
Query: 123 STE-REVNIKGVPDAVTQA 140
S + + + I G P + A
Sbjct: 198 SDQSKPLRITGDPQKIELA 216
Score = 88 (36.0 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P G +IGK G I ++++ SG + I + + +TG P I LA
Sbjct: 158 DIAIPPNRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELA 216
Query: 325 QYLINMSVELLRANLNGEGGGESNM 349
+ L+ E+L N G+G G S +
Sbjct: 217 KQLV---AEIL--NSGGDGNGGSGL 236
Score = 78 (32.5 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
+P +G VIG+GG++I I+ +G R+ R +T+ G+ + A++L
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGC--RVQMSPDADPSSGVRMVTLEGSRSNVETAKHL 133
Query: 328 IN 329
IN
Sbjct: 134 IN 135
Score = 78 (32.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSST---PER 483
G N A + + + G +IGK GET+K++ ESG+ +S T E+
Sbjct: 327 GGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEK 386
Query: 484 IVTVIGSMDSLFRAFSLITKNIEEFHKN 511
+ + G ++ A LI + + N
Sbjct: 387 VFVIKGGKRAIEHAKHLIRIKVGDIAPN 414
Score = 75 (31.5 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M+VP G VIGKGG I +I SGA + +++ + G AI A+
Sbjct: 344 MSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNA--DEKVFVIKGGKRAIEHAK 401
Query: 771 YLINMSV 777
+LI + V
Sbjct: 402 HLIRIKV 408
Score = 75 (31.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M+VP G VIGKGG I +I SGA + +++ + G AI A+
Sbjct: 344 MSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNA--DEKVFVIKGGKRAIEHAK 401
Query: 326 YLINMSV 332
+LI + V
Sbjct: 402 HLIRIKV 408
Score = 67 (28.6 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP +G +IGK G I + +G I+ +R + GT D I A
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTP--ERCAVIMGTRDQIYRA 309
Query: 325 QYLINMSVELLRANLNGEGGG 345
I EL++ + +GGG
Sbjct: 310 TERIT---ELVKKSTMQQGGG 327
Score = 37 (18.1 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 23/110 (20%), Positives = 46/110 (41%)
Query: 37 ERIVTV--IGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXX 94
++++T+ + S+ SLF + SL K + + N + N + + + +P S
Sbjct: 30 DKLITIHHLESLISLF-SDSLPAKRPAD-DTDLNPFMDDN---EAVNEKYPIPESAVGIV 84
Query: 95 XXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144
+ +G V ++ D P+S R V ++G V A + I
Sbjct: 85 IGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLI 134
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 174 (66.3 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 52/178 (29%), Positives = 82/178 (46%)
Query: 437 GVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS---DSSTPERIVTVIGSMDS 493
G R ++ VG IIGK G+T+K+L E+G+KI D STPER ++G+ D
Sbjct: 246 GASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQ 305
Query: 494 LFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQ-----LRLIVPASQCXXXXXXXXXXXX 548
++RA IT+ +++ Q GGN ++ + VPA++C
Sbjct: 306 IYRATERITELVKKSTMQQGG--GGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIK 363
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYR 606
SGA ++ D N+ E+ IKG A+ A + I + + D P P+R
Sbjct: 364 QINSESGAHCELSRDPTGNADEKVFVIKGGKRAIEHAKHLIRIKVGDIAPN---TPFR 418
Score = 169 (64.5 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 50/164 (30%), Positives = 78/164 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG IIGK G+T+K+L E+G+KI D STPER ++G+ D ++RA IT+ +++
Sbjct: 260 VGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATERITELVKK 319
Query: 63 FHKNQNKHLGGNGESQLIQ-----LRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
Q GGN ++ + VPA++C SGA ++
Sbjct: 320 STMQQGG--GGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSR 377
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYR 161
D N+ E+ IKG A+ A + I + + D P P+R
Sbjct: 378 DPTGNADEKVFVIKGGKRAIEHAKHLIRIKVGDIAPN---TPFR 418
Score = 99 (39.9 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 40/151 (26%), Positives = 63/151 (41%)
Query: 452 GSIIGKSGETVKKLREESGSKIY-------ISDSSTPERIVTVIGSMDSLFRAFSLITKN 504
G IIGKSG+T+++L+E+SG K+ +SD S P RI G + A L+ +
Sbjct: 167 GLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRIT---GDPQKIELAKQLVAEI 223
Query: 505 IEEFHKN------QNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+ Q H GG G + + ++VP S +G +
Sbjct: 224 LNSGGDGNGGSGLQMHHAGGGGGASA-RGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKI 282
Query: 559 YVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
D P++ ER I G D + +A +I
Sbjct: 283 QFKPDDDPSTPERCAVIMGTRDQIYRATERI 313
Score = 99 (39.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 40/151 (26%), Positives = 63/151 (41%)
Query: 7 GSIIGKSGETVKKLREESGSKIY-------ISDSSTPERIVTVIGSMDSLFRAFSLITKN 59
G IIGKSG+T+++L+E+SG K+ +SD S P RI G + A L+ +
Sbjct: 167 GLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRIT---GDPQKIELAKQLVAEI 223
Query: 60 IEEFHKN------QNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
+ Q H GG G + + ++VP S +G +
Sbjct: 224 LNSGGDGNGGSGLQMHHAGGGGGASA-RGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKI 282
Query: 114 YVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144
D P++ ER I G D + +A +I
Sbjct: 283 QFKPDDDPSTPERCAVIMGTRDQIYRATERI 313
Score = 89 (36.4 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 29/139 (20%), Positives = 63/139 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 62
VG +IG+ G ++ ++ ++G ++ +S + P R+VT+ GS ++ A LI + +
Sbjct: 81 VGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLINEVVAR 140
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 122
+ ++ G +Q + + +P ++C +E SG + + D
Sbjct: 141 SQNPRPQY--GFPRAQTT-IDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSV 197
Query: 123 STE-REVNIKGVPDAVTQA 140
S + + + I G P + A
Sbjct: 198 SDQSKPLRITGDPQKIELA 216
Score = 88 (36.0 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P G +IGK G I ++++ SG + I + + +TG P I LA
Sbjct: 158 DIAIPPNRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELA 216
Query: 325 QYLINMSVELLRANLNGEGGGESNM 349
+ L+ E+L N G+G G S +
Sbjct: 217 KQLV---AEIL--NSGGDGNGGSGL 236
Score = 78 (32.5 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
+P +G VIG+GG++I I+ +G R+ R +T+ G+ + A++L
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGC--RVQMSPDADPSSGVRMVTLEGSRSNVETAKHL 133
Query: 328 IN 329
IN
Sbjct: 134 IN 135
Score = 78 (32.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSST---PER 483
G N A + + + G +IGK GET+K++ ESG+ +S T E+
Sbjct: 327 GGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEK 386
Query: 484 IVTVIGSMDSLFRAFSLITKNIEEFHKN 511
+ + G ++ A LI + + N
Sbjct: 387 VFVIKGGKRAIEHAKHLIRIKVGDIAPN 414
Score = 75 (31.5 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M+VP G VIGKGG I +I SGA + +++ + G AI A+
Sbjct: 344 MSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNA--DEKVFVIKGGKRAIEHAK 401
Query: 771 YLINMSV 777
+LI + V
Sbjct: 402 HLIRIKV 408
Score = 75 (31.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M+VP G VIGKGG I +I SGA + +++ + G AI A+
Sbjct: 344 MSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNA--DEKVFVIKGGKRAIEHAK 401
Query: 326 YLINMSV 332
+LI + V
Sbjct: 402 HLIRIKV 408
Score = 67 (28.6 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP +G +IGK G I + +G I+ +R + GT D I A
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTP--ERCAVIMGTRDQIYRA 309
Query: 325 QYLINMSVELLRANLNGEGGG 345
I EL++ + +GGG
Sbjct: 310 TERIT---ELVKKSTMQQGGG 327
Score = 37 (18.1 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 23/110 (20%), Positives = 46/110 (41%)
Query: 37 ERIVTV--IGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXX 94
++++T+ + S+ SLF + SL K + + N + N + + + +P S
Sbjct: 30 DKLITIHHLESLISLF-SDSLPAKRPAD-DTDLNPFMDDN---EAVNEKYPIPESAVGIV 84
Query: 95 XXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 144
+ +G V ++ D P+S R V ++G V A + I
Sbjct: 85 IGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLI 134
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 191 (72.3 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 42/89 (47%), Positives = 59/89 (66%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLI 530
++E + GGN + LRL+
Sbjct: 80 AFKLDEDLCAAPAN-GGNVSRPPVTLRLV 107
Score = 184 (69.8 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 41/85 (48%), Positives = 56/85 (65%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLI 85
+E + GGN + LRL+
Sbjct: 84 DEDLCAAPAN-GGNVSRPPVTLRLV 107
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 117 (46.2 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 35/151 (23%), Positives = 64/151 (42%)
Query: 445 IMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKN 504
I + VG +IGK G + ++R+E+G+ I ++ S T + + S + S
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQSPAVNA 333
Query: 505 IEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-- 562
+ ++ +G + I RL+V +SQ R + A++ +
Sbjct: 334 AIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKE 393
Query: 563 DM--LPNSTEREVNIKGVPDAVTQAIYQICL 591
D+ + E V I G PDA +A+ Q+ L
Sbjct: 394 DVPKIAREDEEMVQITGSPDAAMKALTQVIL 424
Score = 94 (38.1 bits), Expect = 5.8e-14, Sum P(4) = 5.8e-14
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 42 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 101
V ++D+LF+ ++ + ++ + + GE Q + +R++VP+ Q
Sbjct: 110 VCPALDALFKVHDMVVADADQDDGTDDDN--DLGEKQTVTVRMLVPSDQIGCVIGKGGQV 167
Query: 102 XXXXRETSGASVYVASDMLPN-----STEREVNIKGVPDAVTQAIYQICLIMVDSPPK 154
R + A + V D LP S + + I G P V +A+YQ+ ++ D+P +
Sbjct: 168 IQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSR 225
Score = 94 (38.1 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 546
V ++D+LF+ ++ + ++ + + GE Q + +R++VP+ Q
Sbjct: 110 VCPALDALFKVHDMVVADADQDDGTDDDN--DLGEKQTVTVRMLVPSDQIGCVIGKGGQV 167
Query: 547 XXXXRETSGASVYVASDMLPN-----STEREVNIKGVPDAVTQAIYQICLIMVDSPPK 599
R + A + V D LP S + + I G P V +A+YQ+ ++ D+P +
Sbjct: 168 IQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSR 225
Score = 91 (37.1 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSL 494
R++ K+ GSIIGK GE K++R E+ S + I+++ ER+VT+ + + L
Sbjct: 47 RYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 100
Score = 89 (36.4 bits), Expect = 5.8e-14, Sum P(4) = 5.8e-14
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXX--XXXXNDRTITMTGTPDAI-- 766
+ V + IG +IGKGG I E+R ++ A IRI ++ + +TG+PDA
Sbjct: 358 LLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMK 417
Query: 767 ALAQYLINM 775
AL Q ++ +
Sbjct: 418 ALTQVILRL 426
Score = 89 (36.4 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXX--XXXXNDRTITMTGTPDAI-- 321
+ V + IG +IGKGG I E+R ++ A IRI ++ + +TG+PDA
Sbjct: 358 LLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMK 417
Query: 322 ALAQYLINM 330
AL Q ++ +
Sbjct: 418 ALTQVILRL 426
Score = 87 (35.7 bits), Expect = 5.8e-14, Sum P(4) = 5.8e-14
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSL 49
K+ GSIIGK GE K++R E+ S + I+++ ER+VT+ + + L
Sbjct: 53 KKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 100
Score = 80 (33.2 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXX---XXXXXNDRTITMTGTPDAIA 322
M VP++ IG VIGKGG I +R + A IR+ +D + + G P +
Sbjct: 150 MLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVR 209
Query: 323 LAQYLI 328
A Y +
Sbjct: 210 EALYQV 215
Score = 80 (33.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXX---XXXXXNDRTITMTGTPDAIA 767
M VP++ IG VIGKGG I +R + A IR+ +D + + G P +
Sbjct: 150 MLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVR 209
Query: 768 LAQYLI 773
A Y +
Sbjct: 210 EALYQV 215
Score = 74 (31.1 bits), Expect = 5.8e-14, Sum P(4) = 5.8e-14
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRI 297
P E +G VIGKGG I +IR+ +GA IR+
Sbjct: 276 PAENVGGVIGKGGGFINQIRQETGATIRV 304
Score = 74 (31.1 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 714 PNELIGAVIGKGGTKIFEIRKISGAMIRI 742
P E +G VIGKGG I +IR+ +GA IR+
Sbjct: 276 PAENVGGVIGKGGGFINQIRQETGATIRV 304
Score = 69 (29.3 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSL 494
+R ++ ++G +IGK G+ ++ LR ++ ++I + P +T+ S D L
Sbjct: 148 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTL--SHDEL 198
Score = 64 (27.6 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSL 49
++G +IGK G+ ++ LR ++ ++I + P +T+ S D L
Sbjct: 156 QIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTL--SHDEL 198
Score = 63 (27.2 bits), Expect = 2.3e-11, Sum P(4) = 2.3e-11
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYI-SDSSTP------ERIVTVIGSMDSLF 495
R ++ ++G +IGK G + ++R + + I I P E +V + GS D+
Sbjct: 357 RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAM 416
Query: 496 RAFSLI 501
+A + +
Sbjct: 417 KALTQV 422
Score = 50 (22.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
P + G++IGKGG +IR + + +RI +R +TM T + +
Sbjct: 51 PVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGC---EERVVTMYSTNEEL 100
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 135 (52.6 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 166
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 167 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 224
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 225 GADKPLRITGDPYKVQQA 242
Score = 135 (52.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 166
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 167 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 224
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 225 GADKPLRITGDPYKVQQA 242
Score = 102 (41.0 bits), Expect = 7.4e-10, Sum P(3) = 7.4e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 99 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 155
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 156 KRLLDQIVE 164
Score = 87 (35.7 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 773 INMSV 777
I +
Sbjct: 438 IEEKI 442
Score = 87 (35.7 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 328 INMSV 332
I +
Sbjct: 438 IEEKI 442
Score = 85 (35.0 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 360 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 417
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 418 NMKLFTIRGTPQQIDYARQLIEEKI 442
Score = 80 (33.2 bits), Expect = 7.4e-10, Sum P(3) = 7.4e-10
Identities = 47/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 177 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 236
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 237 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 294
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + +R I G PD A +I ++ S G P P
Sbjct: 295 KIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 349
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 350 -----GPGGRGRGRGQGNWNMGPP 368
Score = 78 (32.5 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 191 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 250
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 251 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 308
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P P GPG G
Sbjct: 309 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 358
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 359 GQGNWNMGPP 368
Score = 77 (32.2 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 274 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 327
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 328 QHAAEIITDLLRSVQAGNPGG 348
Score = 77 (32.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 274 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 327
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 328 QHAAEIITDLLRSVQAGNPGG 348
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 184 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 241
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 242 AKEMV---LELIR----DQGGFREVRNEYGS 265
Score = 49 (22.3 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 470 PGPGTPMGPYNPAPYNPGPPG 490
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 470 PGPGTPMGPYNPAPYNPGPPG 490
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 135 (52.6 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 166
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 167 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 224
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 225 GADKPLRITGDPYKVQQA 242
Score = 135 (52.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 166
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 167 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 224
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 225 GADKPLRITGDPYKVQQA 242
Score = 102 (41.0 bits), Expect = 7.4e-10, Sum P(3) = 7.4e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 99 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 155
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 156 KRLLDQIVE 164
Score = 87 (35.7 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 773 INMSV 777
I +
Sbjct: 438 IEEKI 442
Score = 87 (35.7 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 328 INMSV 332
I +
Sbjct: 438 IEEKI 442
Score = 85 (35.0 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 360 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 417
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 418 NMKLFTIRGTPQQIDYARQLIEEKI 442
Score = 80 (33.2 bits), Expect = 7.4e-10, Sum P(3) = 7.4e-10
Identities = 47/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 177 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 236
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 237 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 294
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + +R I G PD A +I ++ S G P P
Sbjct: 295 KIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 349
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 350 -----GPGGRGRGRGQGNWNMGPP 368
Score = 78 (32.5 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 191 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 250
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 251 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 308
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P P GPG G
Sbjct: 309 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 358
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 359 GQGNWNMGPP 368
Score = 77 (32.2 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 274 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 327
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 328 QHAAEIITDLLRSVQAGNPGG 348
Score = 77 (32.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 274 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 327
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 328 QHAAEIITDLLRSVQAGNPGG 348
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 184 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 241
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 242 AKEMV---LELIR----DQGGFREVRNEYGS 265
Score = 49 (22.3 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 470 PGPGTPMGPYNPAPYNPGPPG 490
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 470 PGPGTPMGPYNPAPYNPGPPG 490
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 135 (52.6 bits), Expect = 6.5e-14, Sum P(4) = 6.5e-14
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 135 (52.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 102 (41.0 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 104 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 160
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 161 KRLLDQIVE 169
Score = 87 (35.7 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 773 INMSV 777
I +
Sbjct: 443 IEEKI 447
Score = 87 (35.7 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 328 INMSV 332
I +
Sbjct: 443 IEEKI 447
Score = 85 (35.0 bits), Expect = 6.5e-14, Sum P(4) = 6.5e-14
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 365 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 422
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 423 NMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 80 (33.2 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 47/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 182 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 241
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 242 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 299
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + +R I G PD A +I ++ S G P P
Sbjct: 300 KIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 354
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 355 -----GPGGRGRGRGQGNWNMGPP 373
Score = 78 (32.5 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 196 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 255
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 313
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P P GPG G
Sbjct: 314 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 363
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 364 GQGNWNMGPP 373
Score = 77 (32.2 bits), Expect = 6.5e-14, Sum P(4) = 6.5e-14
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 332
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 77 (32.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 332
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 246
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 247 AKEMV---LELIR----DQGGFREVRNEYGS 270
Score = 49 (22.3 bits), Expect = 6.5e-14, Sum P(4) = 6.5e-14
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S PER + G+ +S+ +A L+ + ++
Sbjct: 76 KMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTPESIEQAKRLLGQIVD 135
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S IQ +++PAS+ +E +G + + D +
Sbjct: 136 RCRNGPGFHNDVDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPM 193
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G V QA
Sbjct: 194 PTGADKPLRITGDAFKVQQA 213
Score = 129 (50.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S PER + G+ +S+ +A L+ + ++
Sbjct: 76 KMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTPESIEQAKRLLGQIVD 135
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S IQ +++PAS+ +E +G + + D +
Sbjct: 136 RCRNGPGFHNDVDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPM 193
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G V QA
Sbjct: 194 PTGADKPLRITGDAFKVQQA 213
Score = 107 (42.7 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 40/157 (25%), Positives = 69/157 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +PER+ V+G D A +I++ I
Sbjct: 254 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHIISELILTA 313
Query: 509 HKNQN-------KHLG-GNGE------SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + G G G+ + ++ VPA +C + S
Sbjct: 314 QERDGFGSLAVARGRGRGRGDWSVGTPGGMQEITYTVPADKCGLVIGKGGENIKSINQQS 373
Query: 555 GASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQI 589
GA V + + PN+ R I+GVP + A + I
Sbjct: 374 GAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARHLI 410
Score = 106 (42.4 bits), Expect = 6.5e-14, Sum P(3) = 6.5e-14
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + R T+ G P I LA++
Sbjct: 349 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARH 408
Query: 772 LINMSVELLRANLNGEGG-GES 792
LI+ V ++ G GG G+S
Sbjct: 409 LIDEKVG--GTSMGGPGGFGQS 428
Score = 106 (42.4 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + R T+ G P I LA++
Sbjct: 349 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARH 408
Query: 327 LINMSVELLRANLNGEGG-GES 347
LI+ V ++ G GG G+S
Sbjct: 409 LIDEKVG--GTSMGGPGGFGQS 428
Score = 101 (40.6 bits), Expect = 6.5e-14, Sum P(3) = 6.5e-14
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 70 DFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMP---ERPCVLTGTPESIEQA 126
Query: 325 QYLINMSVELLRANLNGEG 343
+ L+ V+ R NG G
Sbjct: 127 KRLLGQIVDRCR---NGPG 142
Score = 98 (39.6 bits), Expect = 6.5e-14, Sum P(3) = 6.5e-14
Identities = 47/214 (21%), Positives = 83/214 (38%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G ++ +VG +IGK GET+K+L+E +G K I I D P +
Sbjct: 140 GPGFHN-DVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGAD 198
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXX 540
+ + + G + +A ++ + I E + + + + S++ + + VP
Sbjct: 199 KPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVI 258
Query: 541 XXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQIC-LIMVDSPPK 599
+ +G + D S ER + G+PD A + I LI+
Sbjct: 259 GRNGEMIKKIQNDAGVRIQFKPDD-GISPERVAQVMGLPDRCQHAAHIISELILTAQERD 317
Query: 600 G-ATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAP 632
G ++ G +G GMQ P
Sbjct: 318 GFGSLAVARGRGRGRGDWSVGTPGGMQEITYTVP 351
Score = 90 (36.7 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 43/191 (22%), Positives = 76/191 (39%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNI 60
+VG +IGK GET+K+L+E +G K I I D P ++ + + G + +A ++ + I
Sbjct: 162 KVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDAFKVQQAREMVLEII 221
Query: 61 EEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD 118
E + + + + S++ + + VP + +G + D
Sbjct: 222 REKDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD 281
Query: 119 MLPNSTEREVNIKGVPDAVTQAIYQIC-LIMVDSPPKG-ATIPYRPLPQNAGGPGLIGNQ 176
S ER + G+PD A + I LI+ G ++ G +G
Sbjct: 282 D-GISPERVAQVMGLPDRCQHAAHIISELILTAQERDGFGSLAVARGRGRGRGDWSVGTP 340
Query: 177 FGMQNSLMGAP 187
GMQ P
Sbjct: 341 GGMQEITYTVP 351
Score = 84 (34.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G MI I
Sbjct: 139 NGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGA- 197
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG DA + Q M +E++R + G N DFSS
Sbjct: 198 -DKPLRITG--DAFKVQQAR-EMVLEIIREKDQADFRGVRN--DFSS 238
Score = 84 (34.6 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 752
+GP E+ +P +G VIGKGG I ++++ +G MI I
Sbjct: 139 NGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGA- 197
Query: 753 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 799
D+ + +TG DA + Q M +E++R + G N DFSS
Sbjct: 198 -DKPLRITG--DAFKVQQAR-EMVLEIIREKDQADFRGVRN--DFSS 238
Score = 80 (33.2 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 432 NIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVT 486
++ T G + + + + + G +IGK GE +K + ++SG+ + + + P RI T
Sbjct: 336 SVGTPGGMQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFT 395
Query: 487 VIGSMDSLFRAFSLITKNI 505
+ G + A LI + +
Sbjct: 396 IRGVPQQIELARHLIDEKV 414
Score = 65 (27.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 246 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERVAQVMGLPDRCQHA 302
Query: 325 QYLINMSVELLRANLNGEGGG 345
++I+ EL+ +G G
Sbjct: 303 AHIIS---ELILTAQERDGFG 320
Score = 65 (27.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 246 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERVAQVMGLPDRCQHA 302
Query: 770 QYLINMSVELLRANLNGEGGG 790
++I+ EL+ +G G
Sbjct: 303 AHIIS---ELILTAQERDGFG 320
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 135 (52.6 bits), Expect = 6.6e-14, Sum P(4) = 6.6e-14
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 135 (52.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 102 (41.0 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 104 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 160
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 161 KRLLDQIVE 169
Score = 87 (35.7 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 773 INMSV 777
I +
Sbjct: 443 IEEKI 447
Score = 87 (35.7 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 328 INMSV 332
I +
Sbjct: 443 IEEKI 447
Score = 85 (35.0 bits), Expect = 6.6e-14, Sum P(4) = 6.6e-14
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 365 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 422
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 423 NMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 80 (33.2 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 47/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 182 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 241
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 242 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 299
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + +R I G PD A +I ++ S G P P
Sbjct: 300 KIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 354
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 355 -----GPGGRGRGRGQGNWNMGPP 373
Score = 78 (32.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 196 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 255
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 313
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P P GPG G
Sbjct: 314 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 363
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 364 GQGNWNMGPP 373
Score = 77 (32.2 bits), Expect = 6.6e-14, Sum P(4) = 6.6e-14
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 332
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 77 (32.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 332
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 246
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 247 AKEMV---LELIR----DQGGFREVRNEYGS 270
Score = 49 (22.3 bits), Expect = 6.6e-14, Sum P(4) = 6.6e-14
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 135 (52.6 bits), Expect = 7.9e-14, Sum P(4) = 7.9e-14
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 135 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 194
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 195 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 252
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 253 GADKPLRITGDPYKVQQA 270
Score = 135 (52.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 135 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 194
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 195 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 252
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 253 GADKPLRITGDPYKVQQA 270
Score = 102 (41.0 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 127 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 183
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 184 KRLLDQIVE 192
Score = 87 (35.7 bits), Expect = 4.7e-13, Sum P(3) = 4.7e-13
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 406 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 465
Query: 773 INMSV 777
I +
Sbjct: 466 IEEKI 470
Score = 87 (35.7 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 406 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 465
Query: 328 INMSV 332
I +
Sbjct: 466 IEEKI 470
Score = 85 (35.0 bits), Expect = 7.9e-14, Sum P(4) = 7.9e-14
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 388 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 445
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 446 NMKLFTIRGTPQQIDYARQLIEEKI 470
Score = 80 (33.2 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 47/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 205 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 264
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 265 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 322
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + +R I G PD A +I ++ S G P P
Sbjct: 323 KIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 377
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 378 -----GPGGRGRGRGQGNWNMGPP 396
Score = 78 (32.5 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 219 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 278
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 279 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 336
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P P GPG G
Sbjct: 337 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 386
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 387 GQGNWNMGPP 396
Score = 77 (32.2 bits), Expect = 7.9e-14, Sum P(4) = 7.9e-14
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 302 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 355
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 356 QHAAEIITDLLRSVQAGNPGG 376
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 302 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 355
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 356 QHAAEIITDLLRSVQAGNPGG 376
Score = 73 (30.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 212 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 269
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 270 AKEMV---LELIR----DQGGFREVRNEYGS 293
Score = 49 (22.3 bits), Expect = 7.9e-14, Sum P(4) = 7.9e-14
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 498 PGPGTPMGPYNPAPYNPGPPG 518
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 498 PGPGTPMGPYNPAPYNPGPPG 518
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 90 (36.7 bits), Expect = 7.9e-14, Sum P(5) = 7.9e-14
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +P + V+GKGG + IR+ISGAMI I D ++GT + + A
Sbjct: 539 EILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSH---GDHIALLSGTLEQMRCA 595
Query: 770 QYLINMSV 777
+ L+ V
Sbjct: 596 ENLVQAFV 603
Score = 90 (36.7 bits), Expect = 5.1e-12, Sum P(4) = 5.1e-12
Identities = 28/139 (20%), Positives = 64/139 (46%)
Query: 454 IIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEEFHK 510
+IGK G T+K++RE SGS I ++DS T + V ++ + +S S+ + + +
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQE 385
Query: 511 NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE 570
N +++ ++++L+V + R+ + A++ ++ + E
Sbjct: 386 YINDE-----DAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDDLVE 440
Query: 571 REVNIKGVPDAVTQAIYQI 589
+ V DA+ Q + ++
Sbjct: 441 VSGEVSSVRDALIQIVLRL 459
Score = 90 (36.7 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ +P + V+GKGG + IR+ISGAMI I D ++GT + + A
Sbjct: 539 EILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSH---GDHIALLSGTLEQMRCA 595
Query: 325 QYLINMSV 332
+ L+ V
Sbjct: 596 ENLVQAFV 603
Score = 90 (36.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 28/139 (20%), Positives = 64/139 (46%)
Query: 9 IIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEEFHK 65
+IGK G T+K++RE SGS I ++DS T + V ++ + +S S+ + + +
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQE 385
Query: 66 NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE 125
N +++ ++++L+V + R+ + A++ ++ + E
Sbjct: 386 YINDE-----DAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDDLVE 440
Query: 126 REVNIKGVPDAVTQAIYQI 144
+ V DA+ Q + ++
Sbjct: 441 VSGEVSSVRDALIQIVLRL 459
Score = 84 (34.6 bits), Expect = 7.9e-14, Sum P(5) = 7.9e-14
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 441 RMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSL 500
+M+ ++ K +G +IGKSG + ++R+ + + I IS + +V V G + S+ A
Sbjct: 396 KMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDD-LVEVSGEVSSVRDALIQ 454
Query: 501 ITKNIEE 507
I + E
Sbjct: 455 IVLRLRE 461
Score = 79 (32.9 bits), Expect = 7.9e-14, Sum P(5) = 7.9e-14
Identities = 36/136 (26%), Positives = 55/136 (40%)
Query: 45 SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXX 104
+ D+L + + I + EE + N N E RL+VP SQ
Sbjct: 109 AQDALLKVYDAIVASDEENNTKTNVDRDDNKEC-----RLLVPFSQSSSLIGKAGENIKR 163
Query: 105 XRETSGASVYVAS-DML-PNST-----EREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 157
R + ASV V S D+ P+ + V I G P++V QA++ + IM P+
Sbjct: 164 IRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPR-EN 222
Query: 158 IPYRPLPQNAGGPGLI 173
IP Q+ +I
Sbjct: 223 IPLDSTSQDVPAASVI 238
Score = 79 (32.9 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 36/136 (26%), Positives = 55/136 (40%)
Query: 490 SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXX 549
+ D+L + + I + EE + N N E RL+VP SQ
Sbjct: 109 AQDALLKVYDAIVASDEENNTKTNVDRDDNKEC-----RLLVPFSQSSSLIGKAGENIKR 163
Query: 550 XRETSGASVYVAS-DML-PNST-----EREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT 602
R + ASV V S D+ P+ + V I G P++V QA++ + IM P+
Sbjct: 164 IRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPR-EN 222
Query: 603 IPYRPLPQNAGGPGLI 618
IP Q+ +I
Sbjct: 223 IPLDSTSQDVPAASVI 238
Score = 77 (32.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ K +G +IGKSG + ++R+ + + I IS + +V V G + S+ A I +
Sbjct: 401 VSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDD-LVEVSGEVSSVRDALIQIVLRL 459
Query: 61 EE 62
E
Sbjct: 460 RE 461
Score = 71 (30.1 bits), Expect = 7.9e-14, Sum P(5) = 7.9e-14
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSM 46
VG +IGKSG+ + +R + +KI + D +R++T+ S+
Sbjct: 47 VGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSV 89
Score = 71 (30.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSM 491
VG +IGKSG+ + +R + +KI + D +R++T+ S+
Sbjct: 47 VGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSV 89
Score = 69 (29.3 bits), Expect = 6.1e-10, Sum P(4) = 6.1e-10
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--A 322
++ V +++IG VIGK G+ I EIRK + A I I D + ++G ++ A
Sbjct: 398 QLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGK------KDDLVEVSGEVSSVRDA 451
Query: 323 LAQYLINMSVELL 335
L Q ++ + ++L
Sbjct: 452 LIQIVLRLREDVL 464
Score = 69 (29.3 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--A 767
++ V +++IG VIGK G+ I EIRK + A I I D + ++G ++ A
Sbjct: 398 QLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGK------KDDLVEVSGEVSSVRDA 451
Query: 768 LAQYLINMSVELL 780
L Q ++ + ++L
Sbjct: 452 LIQIVLRLREDVL 464
Score = 68 (29.0 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 22/104 (21%), Positives = 50/104 (48%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGS--KIYISDSSTP--------ERIVTVIG 489
+ R ++ + S+IGK+GE +K++R + + K+ D S P + +V + G
Sbjct: 139 KECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISG 198
Query: 490 SMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPA 533
+S+ +A ++ + + + +N L + + +IVP+
Sbjct: 199 EPESVKQALFAVSAIMYKINPRENIPLDSTSQD-VPAASVIVPS 241
Score = 66 (28.3 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 21/91 (23%), Positives = 45/91 (49%)
Query: 8 SIIGKSGETVKKLREESGS--KIYISDSSTP--------ERIVTVIGSMDSLFRAFSLIT 57
S+IGK+GE +K++R + + K+ D S P + +V + G +S+ +A ++
Sbjct: 152 SLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVS 211
Query: 58 KNIEEFHKNQNKHLGGNGESQLIQLRLIVPA 88
+ + + +N L + + +IVP+
Sbjct: 212 AIMYKINPRENIPLDSTSQD-VPAASVIVPS 241
Score = 62 (26.9 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 427 GP-NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP--ER 483
GP +Y + ++ + ++ + ++GK G ++ +R SG+ I IS S T +
Sbjct: 525 GPYSYGRLPSSSA---LEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDH 581
Query: 484 IVTVIGSMDSLFRAFSLI 501
I + G+++ + A +L+
Sbjct: 582 IALLSGTLEQMRCAENLV 599
Score = 61 (26.5 bits), Expect = 7.9e-14, Sum P(5) = 7.9e-14
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 276 VIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSVELL 335
VIGKGG+ I IR+ SG+ I + ++ I +T T + + +V LL
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGD-DECVIIVTATESPDDMKSMAVE-AVLLL 383
Query: 336 RANLNGE 342
+ +N E
Sbjct: 384 QEYINDE 390
Score = 61 (26.5 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 721 VIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSVELL 780
VIGKGG+ I IR+ SG+ I + ++ I +T T + + +V LL
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGD-DECVIIVTATESPDDMKSMAVE-AVLLL 383
Query: 781 RANLNGE 787
+ +N E
Sbjct: 384 QEYINDE 390
Score = 54 (24.1 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 14/69 (20%), Positives = 31/69 (44%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXX-----XXXNDRTITMTGTPDA 320
+ VP ++IGK G I IR+ + A +++ D + ++G P++
Sbjct: 143 LLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPES 202
Query: 321 IALAQYLIN 329
+ A + ++
Sbjct: 203 VKQALFAVS 211
Score = 54 (24.1 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRI 297
P +++G VIGK G I IR + A I++
Sbjct: 43 PIDVVGGVIGKSGKVINAIRHNTKAKIKV 71
Score = 37 (18.1 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 72 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
GG+ S+ + +++ P RE SG+ + V
Sbjct: 304 GGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV 347
Score = 37 (18.1 bits), Expect = 8.3e-07, Sum P(4) = 8.3e-07
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
GG+ S+ + +++ P RE SG+ + V
Sbjct: 304 GGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV 347
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 129 (50.5 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S PER + G+ +S+ +A L+ + ++
Sbjct: 105 KMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTPESIEQAKRLLGQIVD 164
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H +G S IQ +++PAS+ +E +G + + D +
Sbjct: 165 RCRNGPGFHNDVDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPM 222
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G V QA
Sbjct: 223 PTGADKPLRITGDAFKVQQA 242
Score = 129 (50.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S PER + G+ +S+ +A L+ + ++
Sbjct: 105 KMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTPESIEQAKRLLGQIVD 164
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H +G S IQ +++PAS+ +E +G + + D +
Sbjct: 165 RCRNGPGFHNDVDGNST-IQ-EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPM 222
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G V QA
Sbjct: 223 PTGADKPLRITGDAFKVQQA 242
Score = 107 (42.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 40/157 (25%), Positives = 69/157 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +PER+ V+G D A +I++ I
Sbjct: 283 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHIISELILTA 342
Query: 509 HKNQN-------KHLG-GNGE------SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + G G G+ + ++ VPA +C + S
Sbjct: 343 QERDGFGSLAVARGRGRGRGDWSVGTPGGMQEITYTVPADKCGLVIGKGGENIKSINQQS 402
Query: 555 GASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQI 589
GA V + + PN+ R I+GVP + A + I
Sbjct: 403 GAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARHLI 439
Score = 106 (42.4 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + R T+ G P I LA++
Sbjct: 378 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARH 437
Query: 772 LINMSVELLRANLNGEGG-GES 792
LI+ V ++ G GG G+S
Sbjct: 438 LIDEKVG--GTSMGGPGGFGQS 457
Score = 106 (42.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + R T+ G P I LA++
Sbjct: 378 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARH 437
Query: 327 LINMSVELLRANLNGEGG-GES 347
LI+ V ++ G GG G+S
Sbjct: 438 LIDEKVG--GTSMGGPGGFGQS 457
Score = 101 (40.6 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 99 DFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMP---ERPCVLTGTPESIEQA 155
Query: 325 QYLINMSVELLRANLNGEG 343
+ L+ V+ R NG G
Sbjct: 156 KRLLGQIVDRCR---NGPG 171
Score = 98 (39.6 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 47/214 (21%), Positives = 83/214 (38%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP---E 482
GP + N G ++ +VG +IGK GET+K+L+E +G K I I D P +
Sbjct: 169 GPGFHN-DVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGAD 227
Query: 483 RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXX 540
+ + + G + +A ++ + I E + + + + S++ + + VP
Sbjct: 228 KPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVI 287
Query: 541 XXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQIC-LIMVDSPPK 599
+ +G + D S ER + G+PD A + I LI+
Sbjct: 288 GRNGEMIKKIQNDAGVRIQFKPDD-GISPERVAQVMGLPDRCQHAAHIISELILTAQERD 346
Query: 600 G-ATIPYRPLPQNAGGPGLIGNQFGMQNSLMGAP 632
G ++ G +G GMQ P
Sbjct: 347 GFGSLAVARGRGRGRGDWSVGTPGGMQEITYTVP 380
Score = 90 (36.7 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 43/191 (22%), Positives = 76/191 (39%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNI 60
+VG +IGK GET+K+L+E +G K I I D P ++ + + G + +A ++ + I
Sbjct: 191 KVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDAFKVQQAREMVLEII 250
Query: 61 EEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD 118
E + + + + S++ + + VP + +G + D
Sbjct: 251 REKDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD 310
Query: 119 MLPNSTEREVNIKGVPDAVTQAIYQIC-LIMVDSPPKG-ATIPYRPLPQNAGGPGLIGNQ 176
S ER + G+PD A + I LI+ G ++ G +G
Sbjct: 311 D-GISPERVAQVMGLPDRCQHAAHIISELILTAQERDGFGSLAVARGRGRGRGDWSVGTP 369
Query: 177 FGMQNSLMGAP 187
GMQ P
Sbjct: 370 GGMQEITYTVP 380
Score = 84 (34.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIGKGG I ++++ +G MI I
Sbjct: 168 NGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGA- 226
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 354
D+ + +TG DA + Q M +E++R + G N DFSS
Sbjct: 227 -DKPLRITG--DAFKVQQAR-EMVLEIIREKDQADFRGVRN--DFSS 267
Score = 84 (34.6 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 752
+GP E+ +P +G VIGKGG I ++++ +G MI I
Sbjct: 168 NGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGA- 226
Query: 753 NDRTITMTGTPDAIALAQYLINMSVELLRANLNGEGGGESNMDDFSS 799
D+ + +TG DA + Q M +E++R + G N DFSS
Sbjct: 227 -DKPLRITG--DAFKVQQAR-EMVLEIIREKDQADFRGVRN--DFSS 267
Score = 80 (33.2 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 432 NIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVT 486
++ T G + + + + + G +IGK GE +K + ++SG+ + + + P RI T
Sbjct: 365 SVGTPGGMQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFT 424
Query: 487 VIGSMDSLFRAFSLITKNI 505
+ G + A LI + +
Sbjct: 425 IRGVPQQIELARHLIDEKV 443
Score = 65 (27.9 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 275 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERVAQVMGLPDRCQHA 331
Query: 325 QYLINMSVELLRANLNGEGGG 345
++I+ EL+ +G G
Sbjct: 332 AHIIS---ELILTAQERDGFG 349
Score = 65 (27.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 275 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERVAQVMGLPDRCQHA 331
Query: 770 QYLINMSVELLRANLNGEGGG 790
++I+ EL+ +G G
Sbjct: 332 AHIIS---ELILTAQERDGFG 349
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 135 (52.6 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 152 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 211
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 212 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 269
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 270 GADKPLRITGDPYKVQQA 287
Score = 135 (52.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 152 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 211
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 212 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 269
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 270 GADKPLRITGDPYKVQQA 287
Score = 102 (41.0 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 144 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 200
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 201 KRLLDQIVE 209
Score = 87 (35.7 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 423 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 482
Query: 773 INMSV 777
I +
Sbjct: 483 IEEKI 487
Score = 87 (35.7 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 423 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 482
Query: 328 INMSV 332
I +
Sbjct: 483 IEEKI 487
Score = 85 (35.0 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 405 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 462
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 463 NMKLFTIRGTPQQIDYARQLIEEKI 487
Score = 80 (33.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 47/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 222 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 281
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 282 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 339
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + +R I G PD A +I ++ S G P P
Sbjct: 340 KIQNDAGVRIQFKPDD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 394
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 395 -----GPGGRGRGRGQGNWNMGPP 413
Score = 78 (32.5 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 44/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 236 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 295
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 296 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 353
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + +R I G PD A +I ++ S G P P GPG G
Sbjct: 354 DD-GTTPDRIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 403
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 404 GQGNWNMGPP 413
Score = 77 (32.2 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 319 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 372
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 373 QHAAEIITDLLRSVQAGNPGG 393
Score = 77 (32.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 319 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 372
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 373 QHAAEIITDLLRSVQAGNPGG 393
Score = 73 (30.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 229 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 286
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 287 AKEMV---LELIR----DQGGFREVRNEYGS 310
Score = 49 (22.3 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 515 PGPGTPMGPYNPAPYNPGPPG 535
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 515 PGPGTPMGPYNPAPYNPGPPG 535
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 92 (37.4 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
Identities = 37/155 (23%), Positives = 68/155 (43%)
Query: 445 IMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKN 504
I ++G +IGK G T+K +R+ SGS I ++DS T VI ++ + L +
Sbjct: 322 ICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVI-TVTATESPDDLKSMA 380
Query: 505 IEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-D 563
+E Q K + E + ++++L+V + R+ + A ++++ +
Sbjct: 381 VEAVLLLQEK-INDEDEDK-VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGN 438
Query: 564 MLPNSTERE---VNIKGVPDAVTQAIYQICLIMVD 595
P + V I G V A+ QI L + D
Sbjct: 439 NTPKCADPNDELVEISGEVSNVRDALIQIVLRLRD 473
Score = 89 (36.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 36/150 (24%), Positives = 67/150 (44%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFH 64
++G +IGK G T+K +R+ SGS I ++DS T VI ++ + L + +E
Sbjct: 327 KIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVI-TVTATESPDDLKSMAVEAVL 385
Query: 65 KNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-DMLPNS 123
Q K + E + ++++L+V + R+ + A ++++ + P
Sbjct: 386 LLQEK-INDEDEDK-VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKC 443
Query: 124 TERE---VNIKGVPDAVTQAIYQICLIMVD 150
+ V I G V A+ QI L + D
Sbjct: 444 ADPNDELVEISGEVSNVRDALIQIVLRLRD 473
Score = 88 (36.0 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 30/101 (29%), Positives = 50/101 (49%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXX--NDRTITMTGTPDAI- 321
++ V +++IG +IGK G+ I EIRK + A I I ND + ++G +
Sbjct: 402 QLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVR 461
Query: 322 -ALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSS 361
AL Q ++ + ++LR + E G + S +NN SS
Sbjct: 462 DALIQIVLRLRDDVLR---DRETGSRNQPPARSENNNFFSS 499
Score = 88 (36.0 bits), Expect = 5.3e-10, Sum P(4) = 5.3e-10
Identities = 30/101 (29%), Positives = 50/101 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXX--NDRTITMTGTPDAI- 766
++ V +++IG +IGK G+ I EIRK + A I I ND + ++G +
Sbjct: 402 QLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVR 461
Query: 767 -ALAQYLINMSVELLRANLNGEGGGESNMDDFSSDNNLPSS 806
AL Q ++ + ++LR + E G + S +NN SS
Sbjct: 462 DALIQIVLRLRDDVLR---DRETGSRNQPPARSENNNFFSS 499
Score = 85 (35.0 bits), Expect = 1.3e-13, Sum P(5) = 1.3e-13
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +P +G V+G+GG + IR+ISGAMI I R ++GT + A
Sbjct: 577 EVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSH---GGRVALISGTSEQKRTA 633
Query: 770 QYL 772
+ L
Sbjct: 634 ENL 636
Score = 85 (35.0 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ +P +G V+G+GG + IR+ISGAMI I R ++GT + A
Sbjct: 577 EVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSH---GGRVALISGTSEQKRTA 633
Query: 325 QYL 327
+ L
Sbjct: 634 ENL 636
Score = 79 (32.9 bits), Expect = 1.3e-13, Sum P(5) = 1.3e-13
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
IG VIGKGG I IR+ SG+ I + +D IT+T T L + +V
Sbjct: 328 IGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHD--DDCVITVTATESPDDLKSMAVE-AV 384
Query: 333 ELLRANLNGE 342
LL+ +N E
Sbjct: 385 LLLQEKINDE 394
Score = 79 (32.9 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 718 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 777
IG VIGKGG I IR+ SG+ I + +D IT+T T L + +V
Sbjct: 328 IGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHD--DDCVITVTATESPDDLKSMAVE-AV 384
Query: 778 ELLRANLNGE 787
LL+ +N E
Sbjct: 385 LLLQEKINDE 394
Score = 78 (32.5 bits), Expect = 1.3e-13, Sum P(5) = 1.3e-13
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSM 46
+GS+IGKSG+ + +R+E+ ++I + D ER++T+ S+
Sbjct: 55 MGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSV 97
Score = 78 (32.5 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSM 491
+GS+IGKSG+ + +R+E+ ++I + D ER++T+ S+
Sbjct: 55 MGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSV 97
Score = 77 (32.2 bits), Expect = 1.3e-13, Sum P(5) = 1.3e-13
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 441 RMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD-SSTPE 482
+M+ ++ K +G IIGKSG + ++R+ + + I+IS ++TP+
Sbjct: 400 KMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPK 442
Score = 70 (29.7 bits), Expect = 4.1e-09, Sum P(4) = 4.1e-09
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE--RIVTVIGSMD------SLFRAFSLIT 502
VG ++G+ G + +R SG+ I ISDS R+ + G+ + +LF+AF + T
Sbjct: 585 VGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFIMST 644
Score = 66 (28.3 bits), Expect = 1.3e-13, Sum P(5) = 1.3e-13
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 81 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-DML-PNST-----EREVNIKGV 133
+ RL+VP+SQC R + A+V V S D+ P+ T + V I G
Sbjct: 151 ECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGE 210
Query: 134 PDAVTQAIYQICLIMVDSPPK 154
++V +A++ + IM P+
Sbjct: 211 TESVKKALFAVSAIMYKVSPR 231
Score = 66 (28.3 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-DML-PNST-----EREVNIKGV 578
+ RL+VP+SQC R + A+V V S D+ P+ T + V I G
Sbjct: 151 ECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGE 210
Query: 579 PDAVTQAIYQICLIMVDSPPK 599
++V +A++ + IM P+
Sbjct: 211 TESVKKALFAVSAIMYKVSPR 231
Score = 58 (25.5 bits), Expect = 4.1e-05, Sum P(4) = 4.1e-05
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGS--KIYISDSSTP--------ERIVTVIG 489
R R ++ + +IGKSG +K +R + + K+ D S P + IV + G
Sbjct: 150 RECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISG 209
Query: 490 SMDSLFRAFSLIT 502
+S+ +A ++
Sbjct: 210 ETESVKKALFAVS 222
Score = 53 (23.7 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRI 297
P+ ++G+VIGK G I IR+ + A I++
Sbjct: 51 PSGVMGSVIGKSGKVINLIRQETRARIKV 79
Score = 51 (23.0 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 9 IIGKSGETVKKLREESGS--KIYISDSSTP--------ERIVTVIGSMDSLFRAFSLIT 57
+IGKSG +K +R + + K+ D S P + IV + G +S+ +A ++
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVS 222
Score = 46 (21.3 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
+ VP+ VIGK G+ I IR + A +++
Sbjct: 154 LLVPSSQCSIVIGKSGSIIKNIRGRTRANVKV 185
Score = 40 (19.1 bits), Expect = 4.9e-08, Sum P(4) = 4.9e-08
Identities = 13/79 (16%), Positives = 33/79 (41%)
Query: 72 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 131
GG+ S+ + +++I +S+ R+ SG+ + V + + + +
Sbjct: 309 GGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVT 368
Query: 132 GV--PDAV-TQAIYQICLI 147
PD + + A+ + L+
Sbjct: 369 ATESPDDLKSMAVEAVLLL 387
Score = 40 (19.1 bits), Expect = 7.0e-06, Sum P(4) = 7.0e-06
Identities = 13/79 (16%), Positives = 33/79 (41%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 576
GG+ S+ + +++I +S+ R+ SG+ + V + + + +
Sbjct: 309 GGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVT 368
Query: 577 GV--PDAV-TQAIYQICLI 592
PD + + A+ + L+
Sbjct: 369 ATESPDDLKSMAVEAVLLL 387
>UNIPROTKB|C9J7A9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945892 ProteinModelPortal:C9J7A9 SMR:C9J7A9 STRING:C9J7A9
Ensembl:ENST00000490063 ArrayExpress:C9J7A9 Bgee:C9J7A9
Uniprot:C9J7A9
Length = 86
Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/66 (54%), Positives = 50/66 (75%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEE 507
++E
Sbjct: 80 AFKLDE 85
Score = 179 (68.1 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EE 62
+E
Sbjct: 84 DE 85
>UNIPROTKB|C9JSA6 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945164 ProteinModelPortal:C9JSA6 SMR:C9JSA6 STRING:C9JSA6
Ensembl:ENST00000489595 ArrayExpress:C9JSA6 Bgee:C9JSA6
Uniprot:C9JSA6
Length = 92
Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/66 (54%), Positives = 50/66 (75%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 502 TKNIEE 507
++E
Sbjct: 80 AFKLDE 85
Score = 179 (68.1 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A S+I +
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKL 83
Query: 61 EE 62
+E
Sbjct: 84 DE 85
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 141 (54.7 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 335 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 394
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 395 QYLITQRI 402
Score = 141 (54.7 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 335 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 394
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 395 QYLITQRI 402
Score = 107 (42.7 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 77 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 136
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 137 PEQNRKAVELIIQKIQE 153
Score = 97 (39.2 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 94 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 153
Score = 85 (35.0 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 85 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 143
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 144 VELIIQKIQ 152
Score = 77 (32.2 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 343 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 402
Score = 64 (27.6 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 79 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 137
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 138 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 179
Score = 64 (27.6 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 79 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 137
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 138 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 179
Score = 56 (24.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 358 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 398
Score = 46 (21.3 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 33 SSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNK 69
+ T ER+ + G++++L I + I E +N K
Sbjct: 3 TGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAK 39
Score = 46 (21.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 478 SSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNK 514
+ T ER+ + G++++L I + I E +N K
Sbjct: 3 TGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAK 39
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 129 (50.5 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 61
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 62 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 120
H + S IQ +++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDSNST-IQ-EILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPL 204
Query: 121 PNSTEREVNIKGVPDAVTQA 140
P ++ + I G V QA
Sbjct: 205 PTGADKPLRITGDAFKVQQA 224
Score = 129 (50.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 449 KEVGSIIGKSGETVKKLREESGSKIYISDSST--PERIVTVIGSMDSLFRAFSLITKNIE 506
K VG IIG+ GE + +++ ESG KI I+ S+ PER + G+ +S+ +A L+ + ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146
Query: 507 EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD-ML 565
H + S IQ +++PAS+ +E +G + + D L
Sbjct: 147 RCRNGPGFHNDIDSNST-IQ-EILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPL 204
Query: 566 PNSTEREVNIKGVPDAVTQA 585
P ++ + I G V QA
Sbjct: 205 PTGADKPLRITGDAFKVQQA 224
Score = 109 (43.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP++++G +IG+GG +I I+ SG I+I +R +TGTP++I A
Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQA 137
Query: 325 QYLINMSVELLRANLNGEG 343
+ L+ V+ R NG G
Sbjct: 138 KRLLGQIVDRCR---NGPG 153
Score = 109 (43.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 41/153 (26%), Positives = 67/153 (43%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG++GE +KK++ ++G +I D +PER V+G D A +I++ I
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTA 324
Query: 509 HKNQN-------KHLG-GNGESQL-----IQ-LRLIVPASQCXXXXXXXXXXXXXXRETS 554
+ + G G G+ + +Q + VPA +C + S
Sbjct: 325 QERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQS 384
Query: 555 GASVYVASDMLPNSTE--REVNIKGVPDAVTQA 585
GA V + + PNS R I+GVP + A
Sbjct: 385 GAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVA 417
Score = 100 (40.3 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 30/82 (36%), Positives = 39/82 (47%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A+
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQ 419
Query: 772 LINMSVELLRANLNGEGG-GES 792
LI+ V NL G G+S
Sbjct: 420 LIDEKVG--GTNLGAPGAFGQS 439
Score = 100 (40.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/82 (36%), Positives = 39/82 (47%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP + G VIGKGG I I + SGA + + N R T+ G P I +A+
Sbjct: 360 TVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQ 419
Query: 327 LINMSVELLRANLNGEGG-GES 347
LI+ V NL G G+S
Sbjct: 420 LIDEKVG--GTNLGAPGAFGQS 439
Score = 94 (38.1 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 37/170 (21%), Positives = 73/170 (42%)
Query: 427 GPNYAN-IQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTP--- 481
GP + N I + + + ++ +VG +IG+ GET+K+L+E +G K + I D P
Sbjct: 151 GPGFHNDIDSNSTIQEI--LIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGA 208
Query: 482 ERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXX 539
++ + + G + +A ++ + I E + + + G+ S++ + + VP
Sbjct: 209 DKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIV 268
Query: 540 XXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQI 589
+ +G + D S ER + G PD A + I
Sbjct: 269 IGRNGEMIKKIQNDAGVRIQFKPDD-GISPERAAQVMGPPDRCQHAAHII 317
Score = 88 (36.0 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 33/146 (22%), Positives = 63/146 (43%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNI 60
+VG +IG+ GET+K+L+E +G K + I D P ++ + + G + +A ++ + I
Sbjct: 173 KVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEII 232
Query: 61 EEFHKNQNKHLGGNGESQLI--QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD 118
E + + + G+ S++ + + VP + +G + D
Sbjct: 233 REKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD 292
Query: 119 MLPNSTEREVNIKGVPDAVTQAIYQI 144
S ER + G PD A + I
Sbjct: 293 D-GISPERAAQVMGPPDRCQHAAHII 317
Score = 74 (31.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 694 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 752
+GP E+ +P +G VIG+GG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 753 NDRTITMTGTPDAIALAQYLINMSVELLR----ANLNG-EGGGESNMDDFSSDNNLP 804
D+ + +TG DA + Q M +E++R A+ G G S M S + ++P
Sbjct: 209 -DKPLRITG--DAFKVQQAR-EMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVP 261
Score = 74 (31.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXX 307
+GP E+ +P +G VIG+GG I ++++ +G M+ I
Sbjct: 150 NGPGFHNDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGA- 208
Query: 308 NDRTITMTGTPDAIALAQYLINMSVELLR----ANLNG-EGGGESNMDDFSSDNNLP 359
D+ + +TG DA + Q M +E++R A+ G G S M S + ++P
Sbjct: 209 -DKPLRITG--DAFKVQQAR-EMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVP 261
Score = 70 (29.7 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 437 GVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP 481
GVQ + + + + G +IGK GE +K + ++SG+ + + + P
Sbjct: 353 GVQE-ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPP 396
Score = 69 (29.3 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 325 QYLINMSVELLRANLNGEGG 344
++I+ + L +G GG
Sbjct: 314 AHIISELI-LTAQERDGFGG 332
Score = 69 (29.3 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E++VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHA 313
Query: 770 QYLINMSVELLRANLNGEGG 789
++I+ + L +G GG
Sbjct: 314 AHIISELI-LTAQERDGFGG 332
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 135 (52.6 bits), Expect = 1.6e-13, Sum P(4) = 1.6e-13
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 135 (52.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 102 (41.0 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 104 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 160
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 161 KRLLDQIVE 169
Score = 87 (35.7 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 773 INMSV 777
I +
Sbjct: 443 IEEKI 447
Score = 87 (35.7 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 328 INMSV 332
I +
Sbjct: 443 IEEKI 447
Score = 85 (35.0 bits), Expect = 1.6e-13, Sum P(4) = 1.6e-13
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 365 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 422
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 423 NMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 83 (34.3 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 48/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 182 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 241
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 242 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 299
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + ER I G PD A +I ++ S G P P
Sbjct: 300 KIQNDAGVRIQFKPDD-GTTPERIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 354
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 355 -----GPGGRGRGRGQGNWNMGPP 373
Score = 81 (33.6 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 45/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 196 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 255
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 313
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + ER I G PD A +I ++ S G P P GPG G
Sbjct: 314 DD-GTTPERIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 363
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 364 GQGNWNMGPP 373
Score = 73 (30.8 bits), Expect = 1.6e-13, Sum P(4) = 1.6e-13
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ +R +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---ERIAQITGPPDR---C 332
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 73 (30.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ +R +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---ERIAQITGPPDR---C 332
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 246
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 247 AKEMV---LELIR----DQGGFREVRNEYGS 270
Score = 49 (22.3 bits), Expect = 1.6e-13, Sum P(4) = 1.6e-13
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 135 (52.6 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 135 (52.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 171
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 172 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 229
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 230 GADKPLRITGDPYKVQQA 247
Score = 102 (41.0 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 104 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 160
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 161 KRLLDQIVE 169
Score = 87 (35.7 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 773 INMSV 777
I +
Sbjct: 443 IEEKI 447
Score = 87 (35.7 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 328 INMSV 332
I +
Sbjct: 443 IEEKI 447
Score = 85 (35.0 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 365 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 422
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 423 NMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 83 (34.3 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 48/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 182 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 241
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 242 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 299
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + ER I G PD A +I ++ S G P P
Sbjct: 300 KIQNDAGVRIQFKPDD-GTTPERIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 354
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 355 -----GPGGRGRGRGQGNWNMGPP 373
Score = 81 (33.6 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 45/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 196 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 255
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 313
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + ER I G PD A +I ++ S G P P GPG G
Sbjct: 314 DD-GTTPERIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 363
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 364 GQGNWNMGPP 373
Score = 73 (30.8 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ +R +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---ERIAQITGPPDR---C 332
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 73 (30.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ +R +TG PD
Sbjct: 279 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---ERIAQITGPPDR---C 332
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 333 QHAAEIITDLLRSVQAGNPGG 353
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 246
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 247 AKEMV---LELIR----DQGGFREVRNEYGS 270
Score = 49 (22.3 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
Score = 49 (22.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 475 PGPGTPMGPYNPAPYNPGPPG 495
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 141 (54.7 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 331 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 390
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 391 QYLITQRI 398
Score = 141 (54.7 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 331 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 390
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 391 QYLITQRI 398
Score = 107 (42.7 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 73 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 132
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 133 PEQNRKAVELIIQKIQE 149
Score = 97 (39.2 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 90 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 149
Score = 85 (35.0 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 81 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 139
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 140 VELIIQKIQ 148
Score = 77 (32.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 339 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 398
Score = 64 (27.6 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 75 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 133
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 134 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 175
Score = 64 (27.6 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 75 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 133
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 134 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 175
Score = 56 (24.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 354 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 394
Score = 45 (20.9 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 35 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNK 69
T ER+ + G++++L I + I E +N K
Sbjct: 1 TTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAK 35
Score = 45 (20.9 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 480 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNK 514
T ER+ + G++++L I + I E +N K
Sbjct: 1 TTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAK 35
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 135 (52.6 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 133 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 192
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 193 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 250
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 251 GADKPLRITGDPYKVQQA 268
Score = 135 (52.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 133 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 192
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H G+G +Q +++PAS+ +E +G + + D N+
Sbjct: 193 RPAPGFH-HGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 250
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 251 GADKPLRITGDPYKVQQA 268
Score = 102 (41.0 bits), Expect = 4.3e-10, Sum P(3) = 4.3e-10
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 125 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 181
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 182 KRLLDQIVE 190
Score = 87 (35.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 404 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 463
Query: 773 INMSV 777
I +
Sbjct: 464 IEEKI 468
Score = 87 (35.7 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 404 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 463
Query: 328 INMSV 332
I +
Sbjct: 464 IEEKI 468
Score = 85 (35.0 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 386 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 443
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 444 NMKLFTIRGTPQQIDYARQLIEEKI 468
Score = 83 (34.3 bits), Expect = 4.3e-10, Sum P(3) = 4.3e-10
Identities = 48/204 (23%), Positives = 84/204 (41%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSM 491
G ++ IM + G +IGK GET+K+L+E +G K + I D ++ ++ + + G
Sbjct: 203 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 262
Query: 492 DSLFRAFSLITKNIEE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXX 548
+ +A ++ + I + F + +N++ G ++ I + +P
Sbjct: 263 YKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIK 320
Query: 549 XXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 608
+ +G + D + ER I G PD A +I ++ S G P P
Sbjct: 321 KIQNDAGVRIQFKPDD-GTTPERIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP- 375
Query: 609 PQNAGGPGLIGNQFGMQNSLMGAP 632
GPG G G N MG P
Sbjct: 376 -----GPGGRGRGRGQGNWNMGPP 394
Score = 81 (33.6 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 45/190 (23%), Positives = 79/190 (41%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ + I
Sbjct: 217 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 276
Query: 61 EE---FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS 117
+ F + +N++ G ++ I + +P + +G +
Sbjct: 277 RDQGGFREVRNEYGSRIGGNEGIDVP--IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 334
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQF 177
D + ER I G PD A +I ++ S G P P GPG G
Sbjct: 335 DD-GTTPERIAQITGPPDRCQHAA-EIITDLLRSVQAGN--PGGP------GPGGRGRGR 384
Query: 178 GMQNSLMGAP 187
G N MG P
Sbjct: 385 GQGNWNMGPP 394
Score = 73 (30.8 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ +R +TG PD
Sbjct: 300 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---ERIAQITGPPDR---C 353
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 354 QHAAEIITDLLRSVQAGNPGG 374
Score = 73 (30.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ +R +TG PD
Sbjct: 300 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---ERIAQITGPPDR---C 353
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 354 QHAAEIITDLLRSVQAGNPGG 374
Score = 73 (30.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
E+ +P G VIGKGG I ++++ +G M+ I D+ + +TG P +
Sbjct: 210 EIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRITGDPYKVQQ 267
Query: 769 AQYLINMSVELLRANLNGEGGGESNMDDFSS 799
A+ ++ +EL+R +GG +++ S
Sbjct: 268 AKEMV---LELIR----DQGGFREVRNEYGS 291
Score = 49 (22.3 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 496 PGPGTPMGPYNPAPYNPGPPG 516
Score = 49 (22.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 152 PPKGATI-PYRPLPQNAGGPG 171
P G + PY P P N G PG
Sbjct: 496 PGPGTPMGPYNPAPYNPGPPG 516
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 145 (56.1 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 40/138 (28%), Positives = 70/138 (50%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + +L++ESG KI I+ S P+R VT+ GS D++ A L+++ +E+
Sbjct: 101 VGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGSPDAIMTAKRLLSEIVEKG 160
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
+ H +G + +++PAS+ +E +G + + D N+
Sbjct: 161 RPSPAFH-HNDGPGMSVH-EMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 218
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 219 GADKPLRISGDPFKVQQA 236
Score = 145 (56.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 40/138 (28%), Positives = 70/138 (50%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + +L++ESG KI I+ S P+R VT+ GS D++ A L+++ +E+
Sbjct: 101 VGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGSPDAIMTAKRLLSEIVEKG 160
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
+ H +G + +++PAS+ +E +G + + D N+
Sbjct: 161 RPSPAFH-HNDGPGMSVH-EMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 218
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 219 GADKPLRISGDPFKVQQA 236
Score = 118 (46.6 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +++ SG I+I DR++T+TG+PDAI A
Sbjct: 93 EFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMP---DRSVTLTGSPDAIMTA 149
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 150 KRLLSEIVE 158
Score = 87 (35.7 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 712 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 771
TVP G +IGKGG I I + SGA I + N + T+ G+P I A+
Sbjct: 380 TVPTMKTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQ 439
Query: 772 LINMSV 777
L+ +
Sbjct: 440 LVEEKI 445
Score = 87 (35.7 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 267 TVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
TVP G +IGKGG I I + SGA I + N + T+ G+P I A+
Sbjct: 380 TVPTMKTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQ 439
Query: 327 LINMSV 332
L+ +
Sbjct: 440 LVEEKI 445
Score = 85 (35.0 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 450 EVGSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVTVIGSMDSLFRAFSLITKN 504
+ G IIGK GET+K + ++SG++I + + P +I TV GS + A L+ +
Sbjct: 385 KTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQLVEEK 444
Query: 505 I 505
I
Sbjct: 445 I 445
Score = 85 (35.0 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 50/201 (24%), Positives = 80/201 (39%)
Query: 445 IMQGKEVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSL 500
++ + G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A +
Sbjct: 180 MIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRISGDPFKVQQAKDM 239
Query: 501 ITKNIEE--FHKNQNKHL------GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRE 552
+ I + F + + ++ GG GES L + VP +
Sbjct: 240 VMDLIRDQGFREQRGEYGSRAGGGGGGGES----LDVPVPRFAVGIVIGRSGEMIKKIQN 295
Query: 553 TSGASVYVASDMLPNST-EREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+G + D ST ER I G PD A I ++ S G P
Sbjct: 296 DTGVRIQFKPD--DGSTPERIAQIMGPPDRAQHAA-DIITDLLRSVQAGG--PPGHGGGG 350
Query: 612 AGGPGLIGNQFGMQNSLMGAP 632
GG G G G N MG P
Sbjct: 351 GGGGGGRGRGRGQGNWNMGPP 371
Score = 84 (34.6 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 50/196 (25%), Positives = 78/196 (39%)
Query: 5 EVGSIIGKSGETVKKLREESGSK-IYISD---SSTPERIVTVIGSMDSLFRAFSLITKNI 60
+ G +IGK GET+K+L+E +G K + I D ++ ++ + + G + +A ++ I
Sbjct: 185 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRISGDPFKVQQAKDMVMDLI 244
Query: 61 EE--FHKNQNKHL------GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGAS 112
+ F + + ++ GG GES L + VP + +G
Sbjct: 245 RDQGFREQRGEYGSRAGGGGGGGES----LDVPVPRFAVGIVIGRSGEMIKKIQNDTGVR 300
Query: 113 VYVASDMLPNST-EREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPG 171
+ D ST ER I G PD A I ++ S G P GG G
Sbjct: 301 IQFKPD--DGSTPERIAQIMGPPDRAQHAA-DIITDLLRSVQAGG--PPGHGGGGGGGGG 355
Query: 172 LIGNQFGMQNSLMGAP 187
G G N MG P
Sbjct: 356 GRGRGRGQGNWNMGPP 371
Score = 71 (30.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGA-MIRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
EM +P G VIGKGG I ++++ +G M+ I D+ + ++G P +
Sbjct: 178 EMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA--DKPLRISGDPFKVQQ 235
Query: 769 AQYLINMSVELLRANLNGEGGGE 791
A+ +M ++L+R E GE
Sbjct: 236 AK---DMVMDLIRDQGFREQRGE 255
Score = 68 (29.0 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 271 DVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTP---ERIAQIMGPPDR---A 324
Query: 325 QYLINMSVELLRA----NLNGEGGG 345
Q+ ++ +LLR+ G GGG
Sbjct: 325 QHAADIITDLLRSVQAGGPPGHGGG 349
Score = 68 (29.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ +R + G PD A
Sbjct: 271 DVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTP---ERIAQIMGPPDR---A 324
Query: 770 QYLINMSVELLRA----NLNGEGGG 790
Q+ ++ +LLR+ G GGG
Sbjct: 325 QHAADIITDLLRSVQAGGPPGHGGG 349
Score = 39 (18.8 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 604 PYRPLPQNAGGPG 616
PY P P G PG
Sbjct: 481 PYNPGPYGQGPPG 493
Score = 39 (18.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 159 PYRPLPQNAGGPG 171
PY P P G PG
Sbjct: 481 PYNPGPYGQGPPG 493
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 141 (54.7 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 303 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 362
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 363 QYLITQRI 370
Score = 141 (54.7 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 303 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 362
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 363 QYLITQRI 370
Score = 107 (42.7 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 45 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 104
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 105 PEQNRKAVELIIQKIQE 121
Score = 97 (39.2 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 62 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 121
Score = 85 (35.0 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 111
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 112 VELIIQKIQ 120
Score = 77 (32.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 311 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 370
Score = 64 (27.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 47 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 105
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 106 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 147
Score = 64 (27.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 47 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 105
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 106 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 147
Score = 56 (24.8 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 326 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 366
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 125 (49.1 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 50/190 (26%), Positives = 85/190 (44%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + +
Sbjct: 75 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNNVHDFIAEKVR 134
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E ++ K + ++ Q +L+VP S E SGA V
Sbjct: 135 EMPQSAQKTEPVSILQPQTTVNPDRVKQAKLVVPNSTAGLIIGKGGATVKAVMEQSGAWV 194
Query: 114 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT---IPYRPLPQNAG 168
++ D + N ER V I G P+ +A+ +I + + P+ ++ I Y N
Sbjct: 195 QLSQKPDGI-NLQERVVTISGEPEQNRKAV-EIIVQKIQEDPQSSSCLNISY----SNIS 248
Query: 169 GPGLIGNQFG 178
GP N G
Sbjct: 249 GPVANSNPTG 258
Score = 125 (49.1 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 50/190 (26%), Positives = 85/190 (44%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + +
Sbjct: 75 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNNVHDFIAEKVR 134
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E ++ K + ++ Q +L+VP S E SGA V
Sbjct: 135 EMPQSAQKTEPVSILQPQTTVNPDRVKQAKLVVPNSTAGLIIGKGGATVKAVMEQSGAWV 194
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGAT---IPYRPLPQNAG 613
++ D + N ER V I G P+ +A+ +I + + P+ ++ I Y N
Sbjct: 195 QLSQKPDGI-NLQERVVTISGEPEQNRKAV-EIIVQKIQEDPQSSSCLNISY----SNIS 248
Query: 614 GPGLIGNQFG 623
GP N G
Sbjct: 249 GPVANSNPTG 258
Score = 112 (44.5 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTP 763
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGSP 473
Score = 112 (44.5 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTP 318
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TG+P
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGSP 473
Score = 97 (39.2 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++ + ++ G IIGK G TVK + E+SG+ + +S + ER+VT+ G +
Sbjct: 161 KQAKLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTISGEPEQNR 220
Query: 496 RAFSLITKNIEE 507
+A +I + I+E
Sbjct: 221 KAVEIIVQKIQE 232
Score = 85 (35.0 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 66 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 122
Score = 84 (34.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 164 KLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTISGEPEQNRKA 222
Query: 325 QYLINMSVE 333
+I ++
Sbjct: 223 VEIIVQKIQ 231
Score = 84 (34.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 164 KLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTISGEPEQNRKA 222
Query: 770 QYLINMSVE 778
+I ++
Sbjct: 223 VEIIVQKIQ 231
Score = 71 (30.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGS 490
VG+I+GK G+T+ + +E +G++I IS T R VT+ GS
Sbjct: 428 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGS 472
Score = 44 (20.5 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVP 579
+E +GA + ++ + +P + R+V I G P
Sbjct: 443 QELTGARIQISKKGEFVPGTRNRKVTITGSP 473
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 141 (54.7 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 303 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 362
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 363 QYLITQRI 370
Score = 141 (54.7 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 303 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 362
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 363 QYLITQRI 370
Score = 106 (42.4 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 45 TTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGE 104
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 105 PEQNRKAVELIIQKIQE 121
Score = 96 (38.9 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 62 GLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 121
Score = 84 (34.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 111
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 112 VELIIQKIQ 120
Score = 77 (32.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 311 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 370
Score = 64 (27.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 47 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 105
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 106 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 147
Score = 64 (27.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 47 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 105
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 106 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 147
Score = 56 (24.8 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 551 RETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+E +GA + ++ + +P + R+V I G P A A Y I
Sbjct: 326 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 366
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 115 (45.5 bits), Expect = 6.5e-13, Sum P(3) = 6.5e-13
Identities = 34/140 (24%), Positives = 65/140 (46%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + K++++SG K+ I+ S P+R V++ G +++ +A ++ +
Sbjct: 118 VGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLPDRSVSITGGPEAIQKAKMMLDDIVSRG 177
Query: 64 HKNQNK-HLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML-- 120
H NG + ++ ++PA + +E +G + + D
Sbjct: 178 RGTPPSFHESTNGSGHMQEM--VIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQG 235
Query: 121 PNSTEREVNIKGVPDAVTQA 140
PN ++ + I G P V QA
Sbjct: 236 PNM-DKPLRIIGDPYKVQQA 254
Score = 115 (45.5 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 34/140 (24%), Positives = 65/140 (46%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + K++++SG K+ I+ S P+R V++ G +++ +A ++ +
Sbjct: 118 VGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLPDRSVSITGGPEAIQKAKMMLDDIVSRG 177
Query: 509 HKNQNK-HLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML-- 565
H NG + ++ ++PA + +E +G + + D
Sbjct: 178 RGTPPSFHESTNGSGHMQEM--VIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQG 235
Query: 566 PNSTEREVNIKGVPDAVTQA 585
PN ++ + I G P V QA
Sbjct: 236 PNM-DKPLRIIGDPYKVQQA 254
Score = 100 (40.3 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I DR++++TG P+AI A
Sbjct: 110 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLP---DRSVSITGGPEAIQKA 166
Query: 325 QYLIN 329
+ +++
Sbjct: 167 KMMLD 171
Score = 99 (39.9 bits), Expect = 6.5e-13, Sum P(3) = 6.5e-13
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + P++I ++G D A S+I + ++
Sbjct: 305 VGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIAHIMGPPDRCEHAASIINELLQSI 364
Query: 509 HKNQNKHLGGNG 520
+ GG G
Sbjct: 365 RVREE---GGGG 373
Score = 99 (39.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG +IG+SGE +KK++ ++G +I D + P++I ++G D A S+I + ++
Sbjct: 305 VGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIAHIMGPPDRCEHAASIINELLQSI 364
Query: 64 HKNQNKHLGGNG 75
+ GG G
Sbjct: 365 RVREE---GGGG 373
Score = 97 (39.2 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSST-P--ERIVTVIGS 490
T G ++ + G IIGK GET+K+L+E +G K I I D+S P ++ + +IG
Sbjct: 188 TNGSGHMQEMVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQGPNMDKPLRIIGD 247
Query: 491 MDSLFRAFSLITKNIEE-----FHKNQ-NKHLGGNG 520
+ +A ++ + + E F +N+ +GG G
Sbjct: 248 PYKVQQAREMVQEILRERDHPGFERNEYGSRMGGGG 283
Score = 93 (37.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSST-P--ERIVTVIGSMDSLFRAFSLITK 58
GK G IIGK GET+K+L+E +G K I I D+S P ++ + +IG + +A ++ +
Sbjct: 202 GK-AGLIIGKGGETIKQLQERAGVKMILIQDASQGPNMDKPLRIIGDPYKVQQAREMVQE 260
Query: 59 NIEE-----FHKNQ-NKHLGGNG 75
+ E F +N+ +GG G
Sbjct: 261 ILRERDHPGFERNEYGSRMGGGG 283
Score = 85 (35.0 bits), Expect = 6.5e-13, Sum P(3) = 6.5e-13
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + T+ G+P I
Sbjct: 404 EMTFSIPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTIRGSPQQID 463
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 464 HAKQLIEDKIE 474
Score = 85 (35.0 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + T+ G+P I
Sbjct: 404 EMTFSIPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTIRGSPQQID 463
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 464 HAKQLIEDKIE 474
Score = 82 (33.9 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP +G VIG+ G I +I+ +G I+ D+ + G PD A
Sbjct: 297 EVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGP---DKIAHIMGPPDRCEHA 353
Query: 325 QYLINMSVELLRANLNGEGG 344
+IN ++ +R G GG
Sbjct: 354 ASIINELLQSIRVREEGGGG 373
Score = 82 (33.9 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP +G VIG+ G I +I+ +G I+ D+ + G PD A
Sbjct: 297 EVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGP---DKIAHIMGPPDRCEHA 353
Query: 770 QYLINMSVELLRANLNGEGG 789
+IN ++ +R G GG
Sbjct: 354 ASIINELLQSIRVREEGGGG 373
Score = 75 (31.5 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPE-----RIVTVIGSMDSLFRAFSLITKNIE 506
G +IG+ GE VK + +++G+ + IS P ++ T+ GS + A LI IE
Sbjct: 415 GLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTIRGSPQQIDHAKQLIEDKIE 474
Score = 70 (29.7 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 251 PSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDR 310
PS EM +P G +IGKGG I ++++ +G + I D+
Sbjct: 182 PSFHESTNGSGHMQEMVIPAGKAGLIIGKGGETIKQLQERAGVKM-ILIQDASQGPNMDK 240
Query: 311 TITMTGTPDAIALAQYLINMSVELLR 336
+ + G P + A+ ++ E+LR
Sbjct: 241 PLRIIGDPYKVQQAREMVQ---EILR 263
Score = 70 (29.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 696 PSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDR 755
PS EM +P G +IGKGG I ++++ +G + I D+
Sbjct: 182 PSFHESTNGSGHMQEMVIPAGKAGLIIGKGGETIKQLQERAGVKM-ILIQDASQGPNMDK 240
Query: 756 TITMTGTPDAIALAQYLINMSVELLR 781
+ + G P + A+ ++ E+LR
Sbjct: 241 PLRIIGDPYKVQQAREMVQ---EILR 263
Score = 61 (26.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 27/115 (23%), Positives = 41/115 (35%)
Query: 517 GGN-GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REV 573
GGN G ++ +PA +C + +GA V ++ PN +
Sbjct: 394 GGNWGGPPGSEMTFSIPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLF 453
Query: 574 NIKGVPDAVTQAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
I+G P + A Q+ ++ P P G PY P P G PG
Sbjct: 454 TIRGSPQQIDHA-KQLIEDKIEGPLCPVGPGPGGPGPAGPMGPYNPNPYQPGPPG 507
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 161 (61.7 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 85 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 141
Query: 770 QYLINMSVELLRANLNG 786
QYLI +E ++ G
Sbjct: 142 QYLITACLETAKSTSGG 158
Score = 161 (61.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VPN+LIG VIG+ G+KI EIR++SGA I+I +R +T+TG+P +IALA
Sbjct: 85 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGA---GERHVTITGSPVSIALA 141
Query: 325 QYLINMSVELLRANLNG 341
QYLI +E ++ G
Sbjct: 142 QYLITACLETAKSTSGG 158
Score = 68 (29.0 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVI 488
N N+ V R+ ++ + GS+IGK+G +K++RE + + +S + P +V+
Sbjct: 16 NGGNVSRPPVTLRL--VIPASQCGSLIGKAGTKIKEIREVTKLQ-QLSSHAVPFATPSVV 72
Query: 489 GSMD 492
+D
Sbjct: 73 PGLD 76
Score = 66 (28.3 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKIS 291
+ +P G++IGK GTKI EIR+++
Sbjct: 29 LVIPASQCGSLIGKAGTKIKEIREVT 54
Score = 64 (27.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 72 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 131
GGN + LRL++PASQC RE + ++S +P +T V
Sbjct: 17 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQ-QLSSHAVPFATPSVV--P 73
Query: 132 GVPDAVTQAIYQICLIMVD 150
G+ D TQ Q L+ D
Sbjct: 74 GL-DPGTQTSSQEFLVPND 91
Score = 64 (27.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 576
GGN + LRL++PASQC RE + ++S +P +T V
Sbjct: 17 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQ-QLSSHAVPFATPSVV--P 73
Query: 577 GVPDAVTQAIYQICLIMVD 595
G+ D TQ Q L+ D
Sbjct: 74 GL-DPGTQTSSQEFLVPND 91
Score = 60 (26.2 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMD 47
+ GS+IGK+G +K++RE + + +S + P +V+ +D
Sbjct: 35 QCGSLIGKAGTKIKEIREVTKLQ-QLSSHAVPFATPSVVPGLD 76
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 141 (54.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 307 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 366
Query: 770 QYLINMSV 777
QYLI +
Sbjct: 367 QYLITQRI 374
Score = 141 (54.7 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP L+GA++GKGG + E ++++GA I+I +R +T+TGTP A A
Sbjct: 307 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAA 366
Query: 325 QYLINMSV 332
QYLI +
Sbjct: 367 QYLITQRI 374
Score = 103 (41.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G +
Sbjct: 54 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNR 113
Query: 496 RAFSLITKNIEE 507
+A LI + I+E
Sbjct: 114 KAVELIIQKIQE 125
Score = 97 (39.2 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 66 GLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 125
Score = 85 (35.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 57 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 115
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 116 VELIIQKIQ 124
Score = 77 (32.2 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG+I+GK G+T+ + +E +G++I IS T R VT+ G+ + A LIT+ I
Sbjct: 315 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 374
Score = 75 (31.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/156 (24%), Positives = 62/156 (39%)
Query: 35 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGN--------GESQLIQLRLIV 86
T ER+ + G++++L I + I E +N K + ++ Q+++IV
Sbjct: 1 TTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIV 60
Query: 87 PASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 144
P S E SGA V ++ D + N ER V + G P+ +A+ I
Sbjct: 61 PNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKAVELI 119
Query: 145 CLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ + P G+ I Y N GP N G
Sbjct: 120 IQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 151
Score = 75 (31.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/156 (24%), Positives = 62/156 (39%)
Query: 480 TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGN--------GESQLIQLRLIV 531
T ER+ + G++++L I + I E +N K + ++ Q+++IV
Sbjct: 1 TTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIV 60
Query: 532 PASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
P S E SGA V ++ D + N ER V + G P+ +A+ I
Sbjct: 61 PNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKAVELI 119
Query: 590 CLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ + P G+ I Y N GP N G
Sbjct: 120 IQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 151
>UNIPROTKB|Q5T6W2 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00910458 SMR:Q5T6W2 Ensembl:ENST00000457156
Uniprot:Q5T6W2
Length = 379
Score = 200 (75.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+R ++Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 502 TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+EE+ +H G+ +LRL++ S RE + ++ +
Sbjct: 105 IPTLEEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 157
Query: 562 SDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 607
+ P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 158 QECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 203
Score = 194 (73.4 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 47/162 (29%), Positives = 81/162 (50%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+Q K G++IGK G+ +K LR + + + + DSS PERI+++ ++++ I +
Sbjct: 49 LQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTL 108
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
EE+ +H G+ +LRL++ S RE + ++ + +
Sbjct: 109 EEY-----QHYKGSDFD--CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECC 161
Query: 121 PNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP 162
P+ST+R V I G PD V + I I ++ +SP KG PY P
Sbjct: 162 PHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 203
Score = 37 (18.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 710 EMTVPNELIGAVI 722
++T+P +L G++I
Sbjct: 367 QVTIPKDLAGSII 379
Score = 37 (18.1 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 265 EMTVPNELIGAVI 277
++T+P +L G++I
Sbjct: 367 QVTIPKDLAGSII 379
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 108 (43.1 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ +E+
Sbjct: 72 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDI-VEKG 130
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 123
H +G+ +++PAS+ E +G + + D N+
Sbjct: 131 RPAPGFH---HGDGPKCSSEIMIPASKAGLVGKGGETINNS-EERAGVKMVMIQDGPQNT 186
Query: 124 -TEREVNIKGVPDAVTQA 140
++ + I G P V QA
Sbjct: 187 GADKPLRITGDPYKVQQA 204
Score = 108 (43.1 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ +E+
Sbjct: 72 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDI-VEKG 130
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNS 568
H +G+ +++PAS+ E +G + + D N+
Sbjct: 131 RPAPGFH---HGDGPKCSSEIMIPASKAGLVGKGGETINNS-EERAGVKMVMIQDGPQNT 186
Query: 569 -TEREVNIKGVPDAVTQA 585
++ + I G P V QA
Sbjct: 187 GADKPLRITGDPYKVQQA 204
Score = 99 (39.9 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLIT 502
VG +IG++GE +KK++ ++G +I D +TP+RI + G D A +IT
Sbjct: 244 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIIT 297
Score = 99 (39.9 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLIT 57
VG +IG++GE +KK++ ++G +I D +TP+RI + G D A +IT
Sbjct: 244 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIIT 297
Score = 96 (38.9 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 64 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 120
Query: 325 QYLINM 330
+ L+++
Sbjct: 121 KRLLDI 126
Score = 87 (35.7 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 340 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 399
Query: 773 INMSV 777
I +
Sbjct: 400 IEEKI 404
Score = 87 (35.7 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G +IGKGG I I + SGA I + N + T+ GTP I A+ L
Sbjct: 340 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 399
Query: 328 INMSV 332
I +
Sbjct: 400 IEEKI 404
Score = 85 (35.0 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 426 QGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE--- 482
QG N+ N+ G + I+ + G IIGK GET+K + ++SG++I + + P
Sbjct: 322 QG-NW-NMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADP 379
Query: 483 --RIVTVIGSMDSLFRAFSLITKNI 505
++ T+ G+ + A LI + I
Sbjct: 380 NMKLFTIRGTPQQIDYARQLIEEKI 404
Score = 77 (32.2 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 236 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 289
Query: 325 QYLINMSVELLRANLNGEGGG 345
Q+ + +LLR+ G GG
Sbjct: 290 QHAAEIITDLLRSVQAGNPGG 310
Score = 77 (32.2 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P +G VIG+ G I +I+ +G I+ DR +TG PD
Sbjct: 236 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDR---C 289
Query: 770 QYLINMSVELLRANLNGEGGG 790
Q+ + +LLR+ G GG
Sbjct: 290 QHAAEIITDLLRSVQAGNPGG 310
Score = 49 (22.3 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 597 PPKGATI-PYRPLPQNAGGPG 616
P G + PY P P N G PG
Sbjct: 432 PGPGTPMGPYNPAPYNPGPPG 452
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 135 (52.6 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 56/181 (30%), Positives = 84/181 (46%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSL 500
R + +VGS+IGK G V+ L+ ESG+ I +SD + + ERI+ VI + ++L R SL
Sbjct: 279 RLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERII-VISARENLERRHSL 337
Query: 501 ITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+ H N+ +G + ++ RL+V + R +GAS+ V
Sbjct: 338 AQDGVMRVH-NRIVEIGFEPSAAVVA-RLLVHSPYIGRLLGKGGHLISEMRRATGASIRV 395
Query: 561 -ASDMLPN--STERE-VNIKGVPDAVTQAIYQI-CLIMVDSPPKGATIPYRPLP-QNAGG 614
A D S E V + G V A++QI C + + A P R LP Q GG
Sbjct: 396 FAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRL------REAMFPGR-LPFQGMGG 448
Query: 615 P 615
P
Sbjct: 449 P 449
Score = 134 (52.2 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 55/174 (31%), Positives = 82/174 (47%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEE 62
+VGS+IGK G V+ L+ ESG+ I +SD + + ERI+ VI + ++L R SL +
Sbjct: 286 KVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERII-VISARENLERRHSLAQDGVMR 344
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV-ASDMLP 121
H N+ +G + ++ RL+V + R +GAS+ V A D
Sbjct: 345 VH-NRIVEIGFEPSAAVVA-RLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQAT 402
Query: 122 N--STERE-VNIKGVPDAVTQAIYQI-CLIMVDSPPKGATIPYRPLP-QNAGGP 170
S E V + G V A++QI C + + A P R LP Q GGP
Sbjct: 403 KYESQHDEIVQVIGNLKTVQDALFQILCRL------REAMFPGR-LPFQGMGGP 449
Score = 86 (35.3 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS--DSSTP-----ERIVTVIGSMDSLF 495
R I++G +V ++ K G+ ++K+RE+SG+ + IS D P + ++ + G S+
Sbjct: 151 RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVK 210
Query: 496 RAFSLITKNIEE 507
+A L+T ++E
Sbjct: 211 KALLLVTNCLQE 222
Score = 79 (32.9 bits), Expect = 9.5e-11, Sum P(3) = 9.5e-11
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYIS--DSSTP-----ERIVTVIGSMDSLFRAF 53
++G +V ++ K G+ ++K+RE+SG+ + IS D P + ++ + G S+ +A
Sbjct: 154 VRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKAL 213
Query: 54 SLITKNIEE 62
L+T ++E
Sbjct: 214 LLVTNCLQE 222
Score = 75 (31.5 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 7 GSIIGKSGETVKKLREESGSKI-YISDSSTP--ERIVTVI 43
G+IIGK G ++ L+ +GSKI I D P ER+V +I
Sbjct: 31 GAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLII 70
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXX--XXNDRTITMTGTPDAI-- 766
+ V + IG ++GKGG I E+R+ +GA IR+ +D + + G +
Sbjct: 364 LLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQD 423
Query: 767 ALAQYLINMSVELLRANLNGEGGG 790
AL Q L + + L +G G
Sbjct: 424 ALFQILCRLREAMFPGRLPFQGMG 447
Score = 75 (31.5 bits), Expect = 7.3e-06, Sum P(4) = 7.3e-06
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXX--XXNDRTITMTGTPDAI-- 321
+ V + IG ++GKGG I E+R+ +GA IR+ +D + + G +
Sbjct: 364 LLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQD 423
Query: 322 ALAQYLINMSVELLRANLNGEGGG 345
AL Q L + + L +G G
Sbjct: 424 ALFQILCRLREAMFPGRLPFQGMG 447
Score = 66 (28.3 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRI 297
P GA+IGKGG+ I ++ ++G+ IR+
Sbjct: 26 PATRTGAIIGKGGSVIRHLQSVTGSKIRV 54
Score = 62 (26.9 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 714 PNELIGAVIGKGGTKIFEIRKISGAMIRI 742
P + +G++IGKGG + ++ SGA I++
Sbjct: 283 PADKVGSLIGKGGAVVRALQNESGASIKV 311
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRI 297
P + +G++IGKGG + ++ SGA I++
Sbjct: 283 PADKVGSLIGKGGAVVRALQNESGASIKV 311
Score = 61 (26.5 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +P +G V G+ + + I+++SGA + + + + ++GT D A
Sbjct: 552 EIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTT---EGLVVVSGTSDQAHFA 608
Query: 770 QYLIN 774
Q L++
Sbjct: 609 QSLLH 613
Score = 61 (26.5 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ +P +G V G+ + + I+++SGA + + + + ++GT D A
Sbjct: 552 EIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTT---EGLVVVSGTSDQAHFA 608
Query: 325 QYLIN 329
Q L++
Sbjct: 609 QSLLH 613
Score = 60 (26.2 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLI 501
+G + G++ + +++ SG+ + + D + T E +V V G+ D A SL+
Sbjct: 560 LGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLL 612
Score = 59 (25.8 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXX--XXXNDRTITMTGTPDAIAL 323
M V + ++ KGG I +IR+ SGA++RI D I M G ++
Sbjct: 152 MIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKK 211
Query: 324 AQYLI 328
A L+
Sbjct: 212 ALLLV 216
Score = 58 (25.5 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS-DMLPNST---EREVNI 130
GES+ + R+IV +Q RE SGA V ++S D +P + + +
Sbjct: 144 GESEGL-CRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQM 202
Query: 131 KGVPDAVTQAIYQI--CLIMVDSPPKGATIPYRPLP 164
G +V +A+ + CL +PP P+ P P
Sbjct: 203 NGKFSSVKKALLLVTNCLQESGAPPTWDECPF-PQP 237
Score = 46 (21.3 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 525 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNI 575
+ RL+ PA + + SGAS+ V SD +S ER + I
Sbjct: 276 VAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKV-SDPTHDSEERIIVI 325
Score = 46 (21.3 bits), Expect = 3.9e-05, Sum P(4) = 3.9e-05
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNI 130
+ RL+ PA + + SGAS+ V SD +S ER + I
Sbjct: 276 VAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKV-SDPTHDSEERIIVI 325
Score = 43 (20.2 bits), Expect = 3.1e-09, Sum P(4) = 3.1e-09
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNI 130
++ + RL+ PA++ + +G+ + V D+ S ER V I
Sbjct: 16 AESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLI 69
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 129 (50.5 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 61
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 12 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 71
Query: 62 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 72 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 125
Query: 116 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 148
D N+ ++ + I G P V QA + I+
Sbjct: 126 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 159
Score = 129 (50.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 506
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 12 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 71
Query: 507 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 72 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 125
Query: 561 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
D N+ ++ + I G P V QA + I+
Sbjct: 126 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 159
Score = 104 (41.7 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G D A +I ++
Sbjct: 190 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 249
Query: 509 HKNQNKHLGG---------NGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRET 553
GG G Q ++ +P +C +
Sbjct: 250 RSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 309
Query: 554 SGASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+GA V ++ + PN + I+G P + A +++ +G P P P
Sbjct: 310 TGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGP-- 362
Query: 612 AGGPGLIG 619
GGPG G
Sbjct: 363 -GGPGPAG 369
Score = 97 (39.2 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG P+++ A
Sbjct: 4 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA 60
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
+ +++ V R G+ +N
Sbjct: 61 KMMLDDIVSRGRGGPPGQFHDNAN 84
Score = 83 (34.3 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 282 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 341
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 342 HAKQLIEEKIE 352
Score = 83 (34.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 282 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 341
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 342 HAKQLIEEKIE 352
Score = 81 (33.6 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIG 489
Q VQ M I GK G +IGK GET+K+L+E +G K I I D S + + +IG
Sbjct: 87 QNGTVQEIM--IPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 143
Query: 490 SMDSLFRAFSLITKNIEE 507
+ +A ++ + E
Sbjct: 144 DPYKVQQACEMVMDILRE 161
Score = 79 (32.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I I D S + + +IG + +A ++
Sbjct: 99 GK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 157
Query: 59 NIEE 62
+ E
Sbjct: 158 ILRE 161
Score = 75 (31.5 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 182 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 238
Query: 325 QYLINMSVELLRANLNGEGGG 345
+IN ++ LR+ G GG
Sbjct: 239 ARIINDLLQSLRSGPPGPPGG 259
Score = 75 (31.5 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 182 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 238
Query: 770 QYLINMSVELLRANLNGEGGG 790
+IN ++ LR+ G GG
Sbjct: 239 ARIINDLLQSLRSGPPGPPGG 259
Score = 70 (29.7 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +P G VIGKGG I ++++ +G + I D+ + + G P +
Sbjct: 93 EIMIPAGKAGLVIGKGGETIKQLQERAGVKM-ILIQDGSQNTNVDKPLRIIGDPYKV--- 148
Query: 770 QYLINMSVELLRANLNGEGGGESN 793
Q M +++LR G G G+ N
Sbjct: 149 QQACEMVMDILRERDQG-GFGDRN 171
Score = 52 (23.4 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 22/105 (20%), Positives = 38/105 (36%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REVNIKGVPDAVT 583
++ +P +C + +GA V ++ + PN + I+G P +
Sbjct: 282 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 341
Query: 584 QAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
A Q+ ++ P P G P+ P P N G PG
Sbjct: 342 HA-KQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPG 385
>UNIPROTKB|C9IZV9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946687 ProteinModelPortal:C9IZV9 SMR:C9IZV9 STRING:C9IZV9
Ensembl:ENST00000483411 ArrayExpress:C9IZV9 Bgee:C9IZV9
Uniprot:C9IZV9
Length = 75
Score = 171 (65.3 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 33/56 (58%), Positives = 44/56 (78%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRA 497
+R +M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHA 75
Score = 164 (62.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRA 52
M GKEVGSIIGK GETVK++RE+S ++I IS+ S PERI T+ GS ++F A
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHA 75
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 129 (50.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 61
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 117 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 176
Query: 62 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 177 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 230
Query: 116 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 148
D N+ ++ + I G P V QA + I+
Sbjct: 231 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 264
Score = 129 (50.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 506
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 117 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 176
Query: 507 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 177 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 230
Query: 561 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
D N+ ++ + I G P V QA + I+
Sbjct: 231 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 264
Score = 104 (41.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G D A +I ++
Sbjct: 295 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 354
Query: 509 HKNQNKHLGG---------NGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRET 553
GG G Q ++ +P +C +
Sbjct: 355 RSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 414
Query: 554 SGASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+GA V ++ + PN + I+G P + A +++ +G P P P
Sbjct: 415 TGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGP-- 467
Query: 612 AGGPGLIG 619
GGPG G
Sbjct: 468 -GGPGPAG 474
Score = 97 (39.2 bits), Expect = 7.4e-09, Sum P(3) = 7.4e-09
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG P+++ A
Sbjct: 109 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA 165
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
+ +++ V R G+ +N
Sbjct: 166 KMMLDDIVSRGRGGPPGQFHDNAN 189
Score = 83 (34.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 387 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 446
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 447 HAKQLIEEKIE 457
Score = 83 (34.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 387 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 446
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 447 HAKQLIEEKIE 457
Score = 81 (33.6 bits), Expect = 7.4e-09, Sum P(3) = 7.4e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIG 489
Q VQ M I GK G +IGK GET+K+L+E +G K I I D S + + +IG
Sbjct: 192 QNGTVQEIM--IPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 248
Query: 490 SMDSLFRAFSLITKNIEE 507
+ +A ++ + E
Sbjct: 249 DPYKVQQACEMVMDILRE 266
Score = 79 (32.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I I D S + + +IG + +A ++
Sbjct: 204 GK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 262
Query: 59 NIEE 62
+ E
Sbjct: 263 ILRE 266
Score = 75 (31.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 287 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 343
Query: 325 QYLINMSVELLRANLNGEGGG 345
+IN ++ LR+ G GG
Sbjct: 344 ARIINDLLQSLRSGPPGPPGG 364
Score = 75 (31.5 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 287 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 343
Query: 770 QYLINMSVELLRANLNGEGGG 790
+IN ++ LR+ G GG
Sbjct: 344 ARIINDLLQSLRSGPPGPPGG 364
Score = 52 (23.4 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 22/105 (20%), Positives = 38/105 (36%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REVNIKGVPDAVT 583
++ +P +C + +GA V ++ + PN + I+G P +
Sbjct: 387 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 446
Query: 584 QAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
A Q+ ++ P P G P+ P P N G PG
Sbjct: 447 HA-KQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPG 490
Score = 51 (23.0 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 106 RETSGASVYVASDM--LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 163
++ SG V ++ D LP ER V++ G P++V +A +++ D +G P
Sbjct: 132 QQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKAK----MMLDDIVSRGRGGPPGQF 184
Query: 164 PQNAGG 169
NA G
Sbjct: 185 HDNANG 190
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 129 (50.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 61
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 215
Query: 62 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 216 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 269
Query: 116 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 148
D N+ ++ + I G P V QA + I+
Sbjct: 270 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 303
Score = 129 (50.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 506
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 215
Query: 507 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 216 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 269
Query: 561 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
D N+ ++ + I G P V QA + I+
Sbjct: 270 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 303
Score = 104 (41.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G D A +I ++
Sbjct: 334 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 393
Query: 509 HKNQNKHLGG---------NGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRET 553
GG G Q ++ +P +C +
Sbjct: 394 RSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 453
Query: 554 SGASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+GA V ++ + PN + I+G P + A +++ +G P P P
Sbjct: 454 TGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGP-- 506
Query: 612 AGGPGLIG 619
GGPG G
Sbjct: 507 -GGPGPAG 513
Score = 97 (39.2 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG P+++ A
Sbjct: 148 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA 204
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
+ +++ V R G+ +N
Sbjct: 205 KMMLDDIVSRGRGGPPGQFHDNAN 228
Score = 83 (34.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 426 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 485
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 486 HAKQLIEEKIE 496
Score = 83 (34.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 426 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 485
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 486 HAKQLIEEKIE 496
Score = 81 (33.6 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIG 489
Q VQ M I GK G +IGK GET+K+L+E +G K I I D S + + +IG
Sbjct: 231 QNGTVQEIM--IPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 287
Query: 490 SMDSLFRAFSLITKNIEE 507
+ +A ++ + E
Sbjct: 288 DPYKVQQACEMVMDILRE 305
Score = 79 (32.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I I D S + + +IG + +A ++
Sbjct: 243 GK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 301
Query: 59 NIEE 62
+ E
Sbjct: 302 ILRE 305
Score = 75 (31.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 326 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 382
Query: 325 QYLINMSVELLRANLNGEGGG 345
+IN ++ LR+ G GG
Sbjct: 383 ARIINDLLQSLRSGPPGPPGG 403
Score = 75 (31.5 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 326 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 382
Query: 770 QYLINMSVELLRANLNGEGGG 790
+IN ++ LR+ G GG
Sbjct: 383 ARIINDLLQSLRSGPPGPPGG 403
Score = 52 (23.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 22/105 (20%), Positives = 38/105 (36%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REVNIKGVPDAVT 583
++ +P +C + +GA V ++ + PN + I+G P +
Sbjct: 426 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 485
Query: 584 QAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
A Q+ ++ P P G P+ P P N G PG
Sbjct: 486 HA-KQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPG 529
Score = 51 (23.0 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 106 RETSGASVYVASDM--LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 163
++ SG V ++ D LP ER V++ G P++V +A +++ D +G P
Sbjct: 171 QQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKAK----MMLDDIVSRGRGGPPGQF 223
Query: 164 PQNAGG 169
NA G
Sbjct: 224 HDNANG 229
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 129 (50.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 61
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 153 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 212
Query: 62 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 213 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 266
Query: 116 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 148
D N+ ++ + I G P V QA + I+
Sbjct: 267 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 300
Score = 129 (50.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 506
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 153 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 212
Query: 507 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 213 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 266
Query: 561 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
D N+ ++ + I G P V QA + I+
Sbjct: 267 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 300
Score = 104 (41.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G D A +I ++
Sbjct: 331 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 390
Query: 509 HKNQNKHLGG---------NGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRET 553
GG G Q ++ +P +C +
Sbjct: 391 RSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 450
Query: 554 SGASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+GA V ++ + PN + I+G P + A +++ +G P P P
Sbjct: 451 TGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGP-- 503
Query: 612 AGGPGLIG 619
GGPG G
Sbjct: 504 -GGPGPAG 510
Score = 97 (39.2 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG P+++ A
Sbjct: 145 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA 201
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
+ +++ V R G+ +N
Sbjct: 202 KMMLDDIVSRGRGGPPGQFHDNAN 225
Score = 83 (34.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 423 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 482
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 483 HAKQLIEEKIE 493
Score = 83 (34.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 423 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 482
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 483 HAKQLIEEKIE 493
Score = 81 (33.6 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIG 489
Q VQ M I GK G +IGK GET+K+L+E +G K I I D S + + +IG
Sbjct: 228 QNGTVQEIM--IPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 284
Query: 490 SMDSLFRAFSLITKNIEE 507
+ +A ++ + E
Sbjct: 285 DPYKVQQACEMVMDILRE 302
Score = 79 (32.9 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I I D S + + +IG + +A ++
Sbjct: 240 GK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 298
Query: 59 NIEE 62
+ E
Sbjct: 299 ILRE 302
Score = 75 (31.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 323 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 379
Query: 325 QYLINMSVELLRANLNGEGGG 345
+IN ++ LR+ G GG
Sbjct: 380 ARIINDLLQSLRSGPPGPPGG 400
Score = 75 (31.5 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 323 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 379
Query: 770 QYLINMSVELLRANLNGEGGG 790
+IN ++ LR+ G GG
Sbjct: 380 ARIINDLLQSLRSGPPGPPGG 400
Score = 52 (23.4 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 22/105 (20%), Positives = 38/105 (36%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REVNIKGVPDAVT 583
++ +P +C + +GA V ++ + PN + I+G P +
Sbjct: 423 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 482
Query: 584 QAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
A Q+ ++ P P G P+ P P N G PG
Sbjct: 483 HA-KQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPG 526
Score = 51 (23.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 106 RETSGASVYVASDM--LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 163
++ SG V ++ D LP ER V++ G P++V +A +++ D +G P
Sbjct: 168 QQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKAK----MMLDDIVSRGRGGPPGQF 220
Query: 164 PQNAGG 169
NA G
Sbjct: 221 HDNANG 226
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 129 (50.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 61
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 215
Query: 62 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 216 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 269
Query: 116 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 148
D N+ ++ + I G P V QA + I+
Sbjct: 270 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 303
Score = 129 (50.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 506
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 215
Query: 507 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 216 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 269
Query: 561 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
D N+ ++ + I G P V QA + I+
Sbjct: 270 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 303
Score = 104 (41.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G D A +I ++
Sbjct: 334 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 393
Query: 509 HKNQNKHLGG---------NGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRET 553
GG G Q ++ +P +C +
Sbjct: 394 RSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 453
Query: 554 SGASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+GA V ++ + PN + I+G P + A +++ +G P P P
Sbjct: 454 TGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGP-- 506
Query: 612 AGGPGLIG 619
GGPG G
Sbjct: 507 -GGPGPAG 513
Score = 97 (39.2 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG P+++ A
Sbjct: 148 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA 204
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
+ +++ V R G+ +N
Sbjct: 205 KMMLDDIVSRGRGGPPGQFHDNAN 228
Score = 83 (34.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 426 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 485
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 486 HAKQLIEEKIE 496
Score = 83 (34.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 426 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 485
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 486 HAKQLIEEKIE 496
Score = 81 (33.6 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIG 489
Q VQ M I GK G +IGK GET+K+L+E +G K I I D S + + +IG
Sbjct: 231 QNGTVQEIM--IPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 287
Query: 490 SMDSLFRAFSLITKNIEE 507
+ +A ++ + E
Sbjct: 288 DPYKVQQACEMVMDILRE 305
Score = 79 (32.9 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I I D S + + +IG + +A ++
Sbjct: 243 GK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 301
Query: 59 NIEE 62
+ E
Sbjct: 302 ILRE 305
Score = 75 (31.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 326 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 382
Query: 325 QYLINMSVELLRANLNGEGGG 345
+IN ++ LR+ G GG
Sbjct: 383 ARIINDLLQSLRSGPPGPPGG 403
Score = 75 (31.5 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 326 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 382
Query: 770 QYLINMSVELLRANLNGEGGG 790
+IN ++ LR+ G GG
Sbjct: 383 ARIINDLLQSLRSGPPGPPGG 403
Score = 52 (23.4 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 22/105 (20%), Positives = 38/105 (36%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REVNIKGVPDAVT 583
++ +P +C + +GA V ++ + PN + I+G P +
Sbjct: 426 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQID 485
Query: 584 QAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
A Q+ ++ P P G P+ P P N G PG
Sbjct: 486 HA-KQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPG 529
Score = 51 (23.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 106 RETSGASVYVASDM--LPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPL 163
++ SG V ++ D LP ER V++ G P++V +A +++ D +G P
Sbjct: 171 QQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKAK----MMLDDIVSRGRGGPPGQF 223
Query: 164 PQNAGG 169
NA G
Sbjct: 224 HDNANG 229
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 129 (50.5 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 61
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 216
Query: 62 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 217 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 270
Query: 116 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 148
D N+ ++ + I G P V QA + I+
Sbjct: 271 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
Score = 129 (50.5 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 506
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 216
Query: 507 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 217 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 270
Query: 561 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
D N+ ++ + I G P V QA + I+
Sbjct: 271 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
Score = 104 (41.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G D A +I ++
Sbjct: 335 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 394
Query: 509 HKNQNKHLG---------GNGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRET 553
G G G Q ++ +P +C +
Sbjct: 395 RSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 454
Query: 554 SGASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+GA V ++ + PN + I+G P + A +++ +G P P P
Sbjct: 455 TGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGP-- 507
Query: 612 AGGPGLIG 619
GGPG G
Sbjct: 508 -GGPGPAG 514
Score = 97 (39.2 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG P+++ A
Sbjct: 149 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA 205
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
+ +++ V R G+ +N
Sbjct: 206 KMMLDDIVSRGRGGPPGQFHDNAN 229
Score = 84 (34.6 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 427 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQID 486
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 487 HAKQLIEEKIE 497
Score = 84 (34.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 427 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQID 486
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 487 HAKQLIEEKIE 497
Score = 81 (33.6 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIG 489
Q VQ M I GK G +IGK GET+K+L+E +G K I I D S + + +IG
Sbjct: 232 QNGTVQEIM--IPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 288
Query: 490 SMDSLFRAFSLITKNIEE 507
+ +A ++ + E
Sbjct: 289 DPYKVQQACEMVMDILRE 306
Score = 79 (32.9 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I I D S + + +IG + +A ++
Sbjct: 244 GK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 302
Query: 59 NIEE 62
+ E
Sbjct: 303 ILRE 306
Score = 69 (29.3 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 327 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 383
Query: 325 QYLINMSVELLRANLNGEGG 344
+IN ++ LR+ G G
Sbjct: 384 ARIINDLLQSLRSGPPGPPG 403
Score = 69 (29.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 327 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 383
Query: 770 QYLINMSVELLRANLNGEGG 789
+IN ++ LR+ G G
Sbjct: 384 ARIINDLLQSLRSGPPGPPG 403
Score = 52 (23.4 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 22/105 (20%), Positives = 38/105 (36%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REVNIKGVPDAVT 583
++ +P +C + +GA V ++ + PN + I+G P +
Sbjct: 427 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQID 486
Query: 584 QAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
A Q+ ++ P P G P+ P P N G PG
Sbjct: 487 HA-KQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFHPGPFNQGPPG 530
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 129 (50.5 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 61
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 216
Query: 62 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 115
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 217 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 270
Query: 116 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 148
D N+ ++ + I G P V QA + I+
Sbjct: 271 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
Score = 129 (50.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIE-- 506
VG IIG+ GE + K++++SG K+ IS S PER V++ G+ +S+ +A ++ +
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 216
Query: 507 ------EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYV 560
+FH N N G NG Q +++PA + +E +G + +
Sbjct: 217 RGGPPGQFHDNANG--GQNGTVQ----EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL 270
Query: 561 ASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
D N+ ++ + I G P V QA + I+
Sbjct: 271 IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
Score = 104 (41.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 43/188 (22%), Positives = 74/188 (39%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G D A +I ++
Sbjct: 335 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 394
Query: 509 HKNQNKHLG---------GNGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRET 553
G G G Q ++ +P +C +
Sbjct: 395 RSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 454
Query: 554 SGASVYVASDMLPNSTE--REVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQN 611
+GA V ++ + PN + I+G P + A +++ +G P P P
Sbjct: 455 TGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGP-- 507
Query: 612 AGGPGLIG 619
GGPG G
Sbjct: 508 -GGPGPAG 514
Score = 97 (39.2 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG P+++ A
Sbjct: 149 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA 205
Query: 325 QYLINMSVELLRANLNGEGGGESN 348
+ +++ V R G+ +N
Sbjct: 206 KMMLDDIVSRGRGGPPGQFHDNAN 229
Score = 84 (34.6 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 427 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQID 486
Query: 768 LAQYLINMSVE 778
A+ LI +E
Sbjct: 487 HAKQLIEEKIE 497
Score = 84 (34.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + +GA + I N + + G+P I
Sbjct: 427 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQID 486
Query: 323 LAQYLINMSVE 333
A+ LI +E
Sbjct: 487 HAKQLIEEKIE 497
Score = 81 (33.6 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 434 QTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIG 489
Q VQ M I GK G +IGK GET+K+L+E +G K I I D S + + +IG
Sbjct: 232 QNGTVQEIM--IPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 288
Query: 490 SMDSLFRAFSLITKNIEE 507
+ +A ++ + E
Sbjct: 289 DPYKVQQACEMVMDILRE 306
Score = 79 (32.9 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I I D S + + +IG + +A ++
Sbjct: 244 GK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 302
Query: 59 NIEE 62
+ E
Sbjct: 303 ILRE 306
Score = 69 (29.3 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 327 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 383
Query: 325 QYLINMSVELLRANLNGEGG 344
+IN ++ LR+ G G
Sbjct: 384 ARIINDLLQSLRSGPPGPPG 403
Score = 69 (29.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G PD A
Sbjct: 327 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPDRCEHA 383
Query: 770 QYLINMSVELLRANLNGEGG 789
+IN ++ LR+ G G
Sbjct: 384 ARIINDLLQSLRSGPPGPPG 403
Score = 52 (23.4 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 22/105 (20%), Positives = 38/105 (36%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTE--REVNIKGVPDAVT 583
++ +P +C + +GA V ++ + PN + I+G P +
Sbjct: 427 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQID 486
Query: 584 QAIYQICLIMVDSP------------PKGATIPYRPLPQNAGGPG 616
A Q+ ++ P P G P+ P P N G PG
Sbjct: 487 HA-KQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQGPPG 530
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 137 (53.3 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 44/165 (26%), Positives = 75/165 (45%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+I+G G+ +KKL +E+G+KI P ER + +IG+ + ++ LI +E
Sbjct: 257 VGAIMGLQGKNIKKLSDETGTKIQFLPDDDPKLMERSLAIIGNKNKVYVCAQLIKAIVEA 316
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
+ N + ++ +++PAS+C + SGA ++ D N
Sbjct: 317 NSEAAN--------APVVLFYMVIPASKCGLVIGRGGETIKQINQESGAHCELSRDPNTN 368
Query: 568 STEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP--LPQ 610
E+ I+G V A + I + + D PP PY P +PQ
Sbjct: 369 PIEKTFVIRGSEAQVEHAKHLIRVKVGDIPPN---TPYTPAGMPQ 410
Score = 137 (53.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 44/165 (26%), Positives = 75/165 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+I+G G+ +KKL +E+G+KI P ER + +IG+ + ++ LI +E
Sbjct: 257 VGAIMGLQGKNIKKLSDETGTKIQFLPDDDPKLMERSLAIIGNKNKVYVCAQLIKAIVEA 316
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 122
+ N + ++ +++PAS+C + SGA ++ D N
Sbjct: 317 NSEAAN--------APVVLFYMVIPASKCGLVIGRGGETIKQINQESGAHCELSRDPNTN 368
Query: 123 STEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRP--LPQ 165
E+ I+G V A + I + + D PP PY P +PQ
Sbjct: 369 PIEKTFVIRGSEAQVEHAKHLIRVKVGDIPPN---TPYTPAGMPQ 410
Score = 80 (33.2 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 445 IMQGKEVGSIIGKSGETVKKLREESGSKIYIS-DSST-P-ERIVTVIGSMDSLFRAFSLI 501
++ + G +IG+ GET+K++ +ESG+ +S D +T P E+ + GS + A LI
Sbjct: 331 VIPASKCGLVIGRGGETIKQINQESGAHCELSRDPNTNPIEKTFVIRGSEAQVEHAKHLI 390
Query: 502 TKNIEEFHKN 511
+ + N
Sbjct: 391 RVKVGDIPPN 400
Score = 77 (32.2 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITK 58
VG +IG++G V+ + ++SG ++ ++ SST R+V + G +++ RA + I++
Sbjct: 66 VGLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGFRLVEIYGIPENIERAKAYISE 120
Score = 73 (30.8 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 32/158 (20%), Positives = 65/158 (41%)
Query: 452 GSIIGKSGETVKKLREESGSKIYI-SDSSTPERI--VTVIGSMDSLFRAFSLITKNIEEF 508
G+IIGK GE ++KLR + + + D++ + + + + G + + L+ +I
Sbjct: 169 GAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITGDPKQVEQC-RLLVADILAC 227
Query: 509 HKNQ--NKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 566
+ + + + GNG + L++ VP + +G + D P
Sbjct: 228 NDDTPASAMMAGNGPVATMSLQVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQFLPDDDP 287
Query: 567 NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIP 604
ER + I G + V Q+ +V++ + A P
Sbjct: 288 KLMERSLAIIGNKNKV-YVCAQLIKAIVEANSEAANAP 324
Score = 70 (29.7 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M +P G VIG+GG I +I + SGA + ++T + G+ + A+
Sbjct: 330 MVIPASKCGLVIGRGGETIKQINQESGAHCELSRDPNTNPI--EKTFVIRGSEAQVEHAK 387
Query: 771 YLINMSV 777
+LI + V
Sbjct: 388 HLIRVKV 394
Score = 65 (27.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +G VIG+ G ++ I + SG +++ R + + G P+ I A+
Sbjct: 61 VPEQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGF---RLVEIYGIPENIERAKAY 117
Query: 328 IN 329
I+
Sbjct: 118 IS 119
Score = 64 (27.6 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ +P GA+IGKGG ++ ++R + +++ + + +TG P +
Sbjct: 160 EIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTV--KPLKITGDPKQVEQC 217
Query: 325 QYLI 328
+ L+
Sbjct: 218 RLLV 221
Score = 52 (23.4 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 18/84 (21%), Positives = 31/84 (36%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVP 134
G+ I + + +PA++C R + +V + D T + + I G P
Sbjct: 152 GDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITGDP 211
Query: 135 DAVTQAIYQICLIMV--DSPPKGA 156
V Q + I+ D P A
Sbjct: 212 KQVEQCRLLVADILACNDDTPASA 235
Score = 49 (22.3 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +GA++G G I ++ +G I+ +R++ + G + + +
Sbjct: 249 QVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQFLPDDDPKLM--ERSLAIIGNKNKVYVC 306
Query: 325 QYLINMSVE 333
LI VE
Sbjct: 307 AQLIKAIVE 315
>UNIPROTKB|F8VTZ0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01020805
ProteinModelPortal:F8VTZ0 SMR:F8VTZ0 Ensembl:ENST00000550192
ArrayExpress:F8VTZ0 Bgee:F8VTZ0 Uniprot:F8VTZ0
Length = 64
Score = 162 (62.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIG 489
+R +M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG 63
Score = 157 (60.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 30/44 (68%), Positives = 38/44 (86%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIG 44
M GKEVGSIIGK GE+VKK+REESG++I IS+ + PERI+T+ G
Sbjct: 20 MHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG 63
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 106 (42.4 bits), Expect = 7.9e-11, Sum P(3) = 7.9e-11
Identities = 43/141 (30%), Positives = 66/141 (46%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++G+KI IS D + PER +TV GS ++ A I K +
Sbjct: 259 VGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERTITVKGSTEACSNAEVEIMKKL 318
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 120
E ++N + N ++ LI L + A R + A+ Y L
Sbjct: 319 REAYENDI--VAVNQQANLIP-GLNLSALGIFSTGLSMLPSSAGARGAAAAAPYHPFAQL 375
Query: 121 PNSTEREVNIKGVPDAVTQAI 141
P E+EV +P TQA+
Sbjct: 376 P---EQEVVNLFIP---TQAV 390
Score = 106 (42.4 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 43/141 (30%), Positives = 66/141 (46%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++G+KI IS D + PER +TV GS ++ A I K +
Sbjct: 259 VGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERTITVKGSTEACSNAEVEIMKKL 318
Query: 506 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDML 565
E ++N + N ++ LI L + A R + A+ Y L
Sbjct: 319 REAYENDI--VAVNQQANLIP-GLNLSALGIFSTGLSMLPSSAGARGAAAAAPYHPFAQL 375
Query: 566 PNSTEREVNIKGVPDAVTQAI 586
P E+EV +P TQA+
Sbjct: 376 P---EQEVVNLFIP---TQAV 390
Score = 98 (39.6 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 390 VGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI------ 443
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+ + + A V V D P+
Sbjct: 444 FGKLKEENFFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 503
Query: 568 STEREVNIK 576
E EV +K
Sbjct: 504 ENE-EVIVK 511
Score = 87 (35.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 32/153 (20%), Positives = 71/153 (46%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K L +++ SK+ I ++ E+ +T+ + + A
Sbjct: 169 LRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEGCSEAC 228
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I +I + ++ K ++ I L+++ S + +G +
Sbjct: 229 RMIL-DIMQKEADETK------SAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKI 281
Query: 559 YVA--SDMLPNSTEREVNIKGVPDAVTQAIYQI 589
++ D+ + ER + +KG +A + A +I
Sbjct: 282 TISPLQDLTIYNPERTITVKGSTEACSNAEVEI 314
Score = 86 (35.3 bits), Expect = 7.9e-11, Sum P(3) = 7.9e-11
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I +R + +TG P+A AQ
Sbjct: 385 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDAT--ERMVIITGPPEAQFKAQ 440
Score = 86 (35.3 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I +R + +TG P+A AQ
Sbjct: 385 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDAT--ERMVIITGPPEAQFKAQ 440
Score = 84 (34.6 bits), Expect = 7.9e-11, Sum P(3) = 7.9e-11
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAFSLITKNIEE 507
G +IGK G+TV +L+ + +++ + TP+ IV +IG + A I + +++
Sbjct: 473 GRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVKIIGHFFASQTAQRKIREIVQQ 532
Query: 508 FHKNQNKHLGGNGESQ 523
+ + KH G SQ
Sbjct: 533 VKQQEQKHAQGAPASQ 548
Score = 84 (34.6 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 31/144 (21%), Positives = 66/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K L +++ SK+ I ++ E+ +T+ + + A +I +I +
Sbjct: 178 VGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEGCSEACRMIL-DIMQ 236
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA--SDML 120
++ K ++ I L+++ S + +G + ++ D+
Sbjct: 237 KEADETK------SAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT 290
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A + A +I
Sbjct: 291 IYNPERTITVKGSTEACSNAEVEI 314
Score = 68 (29.0 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M VP + +GA+IGK G I + K + + + I ++ IT+ TP+ + A
Sbjct: 171 MLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAA--EKPITIHATPEGCSEAC 228
Query: 326 YLI 328
+I
Sbjct: 229 RMI 231
Score = 58 (25.5 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P++TER V I G P+A +A
Sbjct: 408 AGASIKIAPAEGPDATERMVIITGPPEAQFKA 439
Score = 57 (25.1 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 467 VPSFAAGRVIGKGGKTVNELQNLTSAEV 494
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 135 (52.6 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 49/172 (28%), Positives = 76/172 (44%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEEF 508
G IIGK GE +K+L E+G+KI + P +RI ++G+ D ++RA IT+ +
Sbjct: 252 GMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATERITEIVNRA 311
Query: 509 HKNQN--KHLGGNGE---SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA-S 562
KN + G G Q I + VPA +C +GA+ +A +
Sbjct: 312 IKNNGAPQDRGSAGTVLPGQSI-FYMHVPAGKCGLVIGKGGENIKQIERETGATCGLAPA 370
Query: 563 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGG 614
N E+ IKG + A + + + + + P P PL Q AGG
Sbjct: 371 AEQKNEDEKVFEIKGSQLQIHHASHLVRIKVGEISPN---TPVPPL-QGAGG 418
Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 49/172 (28%), Positives = 76/172 (44%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEEF 63
G IIGK GE +K+L E+G+KI + P +RI ++G+ D ++RA IT+ +
Sbjct: 252 GMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATERITEIVNRA 311
Query: 64 HKNQN--KHLGGNGE---SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA-S 117
KN + G G Q I + VPA +C +GA+ +A +
Sbjct: 312 IKNNGAPQDRGSAGTVLPGQSI-FYMHVPAGKCGLVIGKGGENIKQIERETGATCGLAPA 370
Query: 118 DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGG 169
N E+ IKG + A + + + + + P P PL Q AGG
Sbjct: 371 AEQKNEDEKVFEIKGSQLQIHHASHLVRIKVGEISPN---TPVPPL-QGAGG 418
Score = 97 (39.2 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP +++G VIGKGG++I I++ SG R+ R T+ G PD +A+A+ +
Sbjct: 60 VPEKVVGLVIGKGGSEIRLIQQTSGC--RVQMDPDHQSVNGFRNCTIEGPPDQVAVARQM 117
Query: 328 INMSVELLRANLNGEGGG 345
I +++ N G G
Sbjct: 118 IT---QVINRNQTGAQPG 132
Score = 87 (35.7 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 39/176 (22%), Positives = 76/176 (43%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYIS-DSSTPE--RIVTVIGSMDSLFRAFSLITKNI 60
K VG +IGK G ++ +++ SG ++ + D + R T+ G D + A +IT+ I
Sbjct: 63 KVVGLVIGKGGSEIRLIQQTSGCRVQMDPDHQSVNGFRNCTIEGPPDQVAVARQMITQVI 122
Query: 61 EEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGA-SVYVASDM 119
++NQ G ++ + +++PA + +E SG + V +
Sbjct: 123 ---NRNQTGAQPGAAPGEVTE-EMLIPADKIGLVIGKGGETIRIVQEQSGLRNCNVVQET 178
Query: 120 LPNSTE-REVNIKGVPDAVTQA---IYQICLIMVDSPPKGATIPYRPLPQNAGGPG 171
+ + + + + G P A+ A ++ I + P P++P Q GG G
Sbjct: 179 TTATGQPKPLRMIGSPAAIETAKALVHNIMNNTQGNAPLLQRAPHQPSGQFGGGYG 234
Score = 83 (34.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM +P + IG VIGKGG I +++ SG + + M G+P AI A
Sbjct: 141 EMLIPADKIGLVIGKGGETIRIVQEQSGLRNCNVVQETTTATGQPKPLRMIGSPAAIETA 200
Query: 325 QYLIN 329
+ L++
Sbjct: 201 KALVH 205
Score = 83 (34.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
EM +P + IG VIGKGG I +++ SG + + M G+P AI A
Sbjct: 141 EMLIPADKIGLVIGKGGETIRIVQEQSGLRNCNVVQETTTATGQPKPLRMIGSPAAIETA 200
Query: 770 QYLIN 774
+ L++
Sbjct: 201 KALVH 205
Score = 74 (31.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M VP G VIGKGG I +I + +GA + +++ + G+ I A
Sbjct: 336 MHVPAGKCGLVIGKGGENIKQIERETGATCGLAPAAEQKNE-DEKVFEIKGSQLQIHHAS 394
Query: 771 YLINMSVELLRAN-----LNGEGGG 790
+L+ + V + N L G GGG
Sbjct: 395 HLVRIKVGEISPNTPVPPLQGAGGG 419
Score = 64 (27.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 445 IMQGKEVGSIIGKSGETVKKLREESG 470
++ ++G +IGK GET++ ++E+SG
Sbjct: 143 LIPADKIGLVIGKGGETIRIVQEQSG 168
Score = 61 (26.5 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 24/77 (31%), Positives = 30/77 (38%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP G +IGKGG I + +G I+ DR + GT D I A
Sbjct: 243 EVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNS--EDRIAVIMGTRDQIYRA 300
Query: 770 QYLINMSVELLRANLNG 786
I V N NG
Sbjct: 301 TERITEIVNRAIKN-NG 316
Score = 61 (26.5 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 24/77 (31%), Positives = 30/77 (38%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP G +IGKGG I + +G I+ DR + GT D I A
Sbjct: 243 EVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNS--EDRIAVIMGTRDQIYRA 300
Query: 325 QYLINMSVELLRANLNG 341
I V N NG
Sbjct: 301 TERITEIVNRAIKN-NG 316
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 129 (50.5 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +PN +G +IGKGG I ++ SGA I++ RT+ +TGTPD I+ A
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKA 196
Query: 325 QYLINMSVELLRA-NLNGEGGG 345
+ LI ++ A N G GGG
Sbjct: 197 EQLITDVLQEAEAGNTAGSGGG 218
Score = 129 (50.5 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +PN +G +IGKGG I ++ SGA I++ RT+ +TGTPD I+ A
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKA 196
Query: 770 QYLINMSVELLRA-NLNGEGGG 790
+ LI ++ A N G GGG
Sbjct: 197 EQLITDVLQEAEAGNTAGSGGG 218
Score = 100 (40.3 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 450 EVGSIIGKSGETVKKLREESGSKIYI------SDSSTPERIVTVIGSMDSLFRAFSLITK 503
+VG IIGK GET+K ++ ++G++I + TPER + + G + + A L+ +
Sbjct: 240 KVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIEHAKQLVNE 299
Query: 504 NIEEFHKNQNKHLGGNGESQ 523
I ++ +N +GG Q
Sbjct: 300 IISGENRMRNSAMGGGYPQQ 319
Score = 86 (35.3 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXN-DRTITMTGTPDAIALA 769
M +PN +G +IGKGG I ++ +GA I++ +RT+ + G + I A
Sbjct: 234 MKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIEHA 293
Query: 770 QYLIN--MSVELLRANLNGEGGG 790
+ L+N +S E N + GGG
Sbjct: 294 KQLVNEIISGENRMRN-SAMGGG 315
Score = 47 (21.6 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 596 SPPKGATIP-YRPLPQNAGGPGLIGNQFG 623
+PP + P Y Q+ G PG G+Q G
Sbjct: 530 APPPASKPPTYGQSQQSPGAPGSYGSQSG 558
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 105 (42.0 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++G+KI IS D + PER +TV GS ++ A I K +
Sbjct: 259 VGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERTITVKGSTEACSNAEVEIMKKL 318
Query: 61 EEFHKN 66
E ++N
Sbjct: 319 REAYEN 324
Score = 105 (42.0 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++G+KI IS D + PER +TV GS ++ A I K +
Sbjct: 259 VGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERTITVKGSTEACSNAEVEIMKKL 318
Query: 506 EEFHKN 511
E ++N
Sbjct: 319 REAYEN 324
Score = 98 (39.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 412 VGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI------ 465
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+ + + A V V D P+
Sbjct: 466 FGKLKEENFFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 525
Query: 568 STEREVNIK 576
E EV +K
Sbjct: 526 ENE-EVIVK 533
Score = 87 (35.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 32/153 (20%), Positives = 71/153 (46%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K L +++ SK+ I ++ E+ +T+ + + A
Sbjct: 169 LRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEGCSEAC 228
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I +I + ++ K ++ I L+++ S + +G +
Sbjct: 229 RMIL-DIMQKEADETK------SAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKI 281
Query: 559 YVA--SDMLPNSTEREVNIKGVPDAVTQAIYQI 589
++ D+ + ER + +KG +A + A +I
Sbjct: 282 TISPLQDLTIYNPERTITVKGSTEACSNAEVEI 314
Score = 86 (35.3 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I +R + +TG P+A AQ
Sbjct: 407 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDAT--ERMVIITGPPEAQFKAQ 462
Score = 86 (35.3 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I +R + +TG P+A AQ
Sbjct: 407 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDAT--ERMVIITGPPEAQFKAQ 462
Score = 84 (34.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAFSLITKNIEE 507
G +IGK G+TV +L+ + +++ + TP+ IV +IG + A I + +++
Sbjct: 495 GRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVKIIGHFFASQTAQRKIREIVQQ 554
Query: 508 FHKNQNKHLGGNGESQ 523
+ + KH G SQ
Sbjct: 555 VKQQEQKHAQGAPASQ 570
Score = 84 (34.6 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 31/144 (21%), Positives = 66/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K L +++ SK+ I ++ E+ +T+ + + A +I +I +
Sbjct: 178 VGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEGCSEACRMIL-DIMQ 236
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA--SDML 120
++ K ++ I L+++ S + +G + ++ D+
Sbjct: 237 KEADETK------SAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT 290
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A + A +I
Sbjct: 291 IYNPERTITVKGSTEACSNAEVEI 314
Score = 68 (29.0 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M VP + +GA+IGK G I + K + + + I ++ IT+ TP+ + A
Sbjct: 171 MLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAA--EKPITIHATPEGCSEAC 228
Query: 326 YLI 328
+I
Sbjct: 229 RMI 231
Score = 58 (25.5 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P++TER V I G P+A +A
Sbjct: 430 AGASIKIAPAEGPDATERMVIITGPPEAQFKA 461
Score = 58 (25.5 bits), Expect = 7.7e-08, Sum P(3) = 7.7e-08
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P++TER V I G P+A +A
Sbjct: 430 AGASIKIAPAEGPDATERMVIITGPPEAQFKA 461
Score = 57 (25.1 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 489 VPSFAAGRVIGKGGKTVNELQNLTSAEV 516
Score = 57 (25.1 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 489 VPSFAAGRVIGKGGKTVNELQNLTSAEV 516
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 106 (42.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS-----DSSTPERIVTVIGSMDSLFRAFSLITKNI 60
+G IIGKSG T+K++ +++ +KI +S +S ERI+TV G ++++ RA + I+ +
Sbjct: 191 IGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGLIENMSRAENQISTKL 250
Query: 61 EEFHKN 66
+ ++N
Sbjct: 251 RQSYEN 256
Score = 106 (42.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS-----DSSTPERIVTVIGSMDSLFRAFSLITKNI 505
+G IIGKSG T+K++ +++ +KI +S +S ERI+TV G ++++ RA + I+ +
Sbjct: 191 IGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGLIENMSRAENQISTKL 250
Query: 506 EEFHKN 511
+ ++N
Sbjct: 251 RQSYEN 256
Score = 94 (38.1 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXX--XXXNDRTITMTGTPDAIALAQ 325
+PN +GA+IG G+ I I + S A ++I +R +T+ GTP+ AQ
Sbjct: 324 IPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQ 383
Query: 326 YLI 328
Y+I
Sbjct: 384 YMI 386
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXX--XXXNDRTITMTGTPDAIALAQ 770
+PN +GA+IG G+ I I + S A ++I +R +T+ GTP+ AQ
Sbjct: 324 IPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQ 383
Query: 771 YLI 773
Y+I
Sbjct: 384 YMI 386
Score = 82 (33.9 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 30/150 (20%), Positives = 74/150 (49%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLIT 57
+Q + VG+IIG+ G T++ + ++S +++ + + + E+ +T+ G+ ++ A I
Sbjct: 99 VQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRIL 158
Query: 58 KNIEEFHKNQNKHLGG-NGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 116
+ +++ + NK G + E I L+++ + + + + V+
Sbjct: 159 EVMQQEAISTNK--GELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVS 216
Query: 117 S--DMLPNSTEREVNIKGVPDAVTQAIYQI 144
S D+ + ER + +KG+ + +++A QI
Sbjct: 217 SINDINSFNLERIITVKGLIENMSRAENQI 246
Score = 75 (31.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 742
E+ V + +G +IGKGG + E+++++G++I++
Sbjct: 407 ELLVASSQVGRIIGKGGQNVRELQRVTGSVIKL 439
Score = 75 (31.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
E+ V + +G +IGKGG + E+++++G++I++
Sbjct: 407 ELLVASSQVGRIIGKGGQNVRELQRVTGSVIKL 439
Score = 74 (31.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 37/163 (22%), Positives = 74/163 (45%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTP-----ERIVTVIGSMDSLFRAFSLITK 503
VG+IIG G ++ + S + + I+ D+ P ER VT++G+ + ++A +I +
Sbjct: 329 VGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQYMIFE 388
Query: 504 NIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASD 563
+ E + G + +L + L+V +SQ + +G+ + +
Sbjct: 389 KMRE-----EGFMCGTDDVRLT-VELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEH 442
Query: 564 ML--PNSTERE--VNIKGVPDAVTQAIYQICLIMVDSPPKGAT 602
L P+ + E V+I G+ +V A +I +M+ + P T
Sbjct: 443 ALAPPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLSTNPPPIT 485
Score = 68 (29.0 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI----------SDSSTPERI 484
T V+ + ++ +VG IIGK G+ V++L+ +GS I + D TP I
Sbjct: 399 TDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHI 458
Query: 485 VTVIGSMDSLFR 496
+ + S+ S R
Sbjct: 459 IGLFYSVQSAQR 470
Score = 65 (27.9 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI--ALAQ 325
V +E++GA+IG+ G+ I I + S A R+ +++IT+ G P+ A +
Sbjct: 99 VQSEMVGAIIGRQGSTIRTITQQSRA--RVDVHRKENVGSLEKSITIYGNPENCTNACKR 156
Query: 326 YLINMSVELLRANLNGE 342
L M E + N GE
Sbjct: 157 ILEVMQQEAISTN-KGE 172
Score = 58 (25.5 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 24/96 (25%), Positives = 36/96 (37%)
Query: 56 ITKNIEEFHKNQ-NKHLG--GNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGAS 112
+ KN +NQ N + G G G LR++V + + S A
Sbjct: 66 LDKNQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRAR 125
Query: 113 VYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIM 148
V V S E+ + I G P+ T A +I +M
Sbjct: 126 VDVHRKENVGSLEKSITIYGNPENCTNACKRILEVM 161
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 88 (36.0 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 273 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 332
IGAV+G GG + +R+ SGAMIR+ ND I +TG D +A+ + L+ +S
Sbjct: 151 IGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTK-NDELIQITG--DVLAVKKALVMVSS 207
Query: 333 ELLR-ANLNG 341
+ A LNG
Sbjct: 208 YIQNNAPLNG 217
Score = 88 (36.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 718 IGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 777
IGAV+G GG + +R+ SGAMIR+ ND I +TG D +A+ + L+ +S
Sbjct: 151 IGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTK-NDELIQITG--DVLAVKKALVMVSS 207
Query: 778 ELLR-ANLNG 786
+ A LNG
Sbjct: 208 YIQNNAPLNG 217
Score = 86 (35.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFS 499
+R + +G IIG +G V KLR E+G+KI+ + + +V ++GS +
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGS--TAVNQSI 84
Query: 500 LITKNIEEFHKNQNK 514
L+T + EF +++
Sbjct: 85 LLTDRVGEFSGGEHE 99
Score = 83 (34.3 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIGSMDSLFRAFSLITKNIEEF 63
+G IIG +G V KLR E+G+KI+ + + +V ++GS + L+T + EF
Sbjct: 36 IGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGS--TAVNQSILLTDRVGEF 93
Query: 64 HKNQNK 69
+++
Sbjct: 94 SGGEHE 99
Score = 76 (31.8 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTVIG--SMDSLF----RAFSLI-T 502
G IIGK G ++ L+ E+G+ I + + ER+VTV +++S + A +L+
Sbjct: 289 GGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFA 348
Query: 503 KNIE-EFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA 561
+++E + K L NG +++ +L+VP+ +GA V+++
Sbjct: 349 RSVEIDVEKGLRPGLH-NGA--IVKTKLLVPSHFANSFNGNGNREAIIA---TGADVHIS 402
Query: 562 --SDMLPNSTEREV--NIKGVPDAVTQAIYQI 589
+ +L +E EV IKG V +A+ +
Sbjct: 403 VGNQVLEWISENEVVIEIKGEYSHVQKALTHV 434
Score = 72 (30.4 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLI 501
+GS+ G+ G V L++ SG+ + + D + E V + G+ + A SLI
Sbjct: 575 LGSLYGRDGTGVDNLQQISGANVDVKDPTGTEATVLISGNPEQARTAMSLI 625
Score = 69 (29.3 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ V + +G++ G+ GT + +++ISGA + + + T+ ++G P+ A
Sbjct: 567 ELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTGT-----EATVLISGNPEQARTA 621
Query: 770 QYLI 773
LI
Sbjct: 622 MSLI 625
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 719 GAVIGKGGTKIFEIRKISGAMIRI 742
G +IGK GT I ++ +GA I +
Sbjct: 289 GGIIGKQGTIIRALQNETGASISV 312
Score = 37 (18.1 bits), Expect = 1.6e-05, Sum P(4) = 1.6e-05
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 281 GTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQY 326
GTK E+ +I+G ++ + + G P +++ Y
Sbjct: 182 GTKNDELIQITGDVLAVKKALVMVSSYIQNNAPLNGYPPPLSIKGY 227
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 108 (43.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 185 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 244
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 245 REAFENDM--LAVNQQANLI 262
Score = 108 (43.1 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 185 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 244
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 245 REAFENDM--LAVNQQANLI 262
Score = 98 (39.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 338 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 391
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 392 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 451
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 452 ENE-EVIVR 459
Score = 87 (35.7 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 333 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 388
Score = 87 (35.7 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 333 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 388
Score = 79 (32.9 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 31/153 (20%), Positives = 70/153 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A
Sbjct: 95 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEAC 154
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I + +++ ++ K ++ I L+++ +G +
Sbjct: 155 RMILEIMQK-EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKI 207
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
++S D+ + ER + +KG +A A +I
Sbjct: 208 TISSLQDLSIYNPERTITVKGTVEACANAEIEI 240
Score = 77 (32.2 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 104 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 163
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 164 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 216
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 217 IYNPERTITVKGTVEACANAEIEI 240
Score = 74 (31.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 412 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 471
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 472 RKIREIVQQVKQQEQKYPQG 491
Score = 65 (27.9 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 99 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 156
Query: 328 I 328
I
Sbjct: 157 I 157
Score = 60 (26.2 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 415 VPSSTAGRVIGKGGKTVNELQNLTSAEV 442
Score = 60 (26.2 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 415 VPSSTAGRVIGKGGKTVNELQNLTSAEV 442
Score = 51 (23.0 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 356 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 387
Score = 51 (23.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 356 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 387
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 107 (42.7 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 207 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 266
Query: 61 EEFHKNQ----NKHLG 72
E +N N H G
Sbjct: 267 REAFENDMLAVNTHSG 282
Score = 107 (42.7 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 207 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 266
Query: 506 EEFHKNQ----NKHLG 517
E +N N H G
Sbjct: 267 REAFENDMLAVNTHSG 282
Score = 98 (39.6 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 317 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 370
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 371 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 430
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 431 ENE-EVIVR 438
Score = 87 (35.7 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 312 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 367
Score = 87 (35.7 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 312 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 367
Score = 79 (32.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 31/153 (20%), Positives = 70/153 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A
Sbjct: 117 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEAC 176
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I + +++ ++ K ++ I L+++ +G +
Sbjct: 177 RMILEIMQK-EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKI 229
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
++S D+ + ER + +KG +A A +I
Sbjct: 230 TISSLQDLSIYNPERTITVKGTVEACANAEIEI 262
Score = 77 (32.2 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 126 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 185
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 186 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 238
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 239 IYNPERTITVKGTVEACANAEIEI 262
Score = 74 (31.1 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 391 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 450
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 451 RKIREIVQQVKQQEQKYPQG 470
Score = 65 (27.9 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 121 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 178
Query: 328 I 328
I
Sbjct: 179 I 179
Score = 60 (26.2 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 394 VPSSTAGRVIGKGGKTVNELQNLTSAEV 421
Score = 60 (26.2 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 394 VPSSTAGRVIGKGGKTVNELQNLTSAEV 421
Score = 51 (23.0 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 335 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 366
Score = 51 (23.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 335 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 366
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 108 (43.1 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 207 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 266
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 267 REAFENDM--LAVNQQANLI 284
Score = 108 (43.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 207 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 266
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 267 REAFENDM--LAVNQQANLI 284
Score = 98 (39.6 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 360 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 413
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 414 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 473
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 474 ENE-EVIVR 481
Score = 87 (35.7 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 355 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 410
Score = 87 (35.7 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 355 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 410
Score = 79 (32.9 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 31/153 (20%), Positives = 70/153 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A
Sbjct: 117 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEAC 176
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I + +++ ++ K ++ I L+++ +G +
Sbjct: 177 RMILEIMQK-EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKI 229
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
++S D+ + ER + +KG +A A +I
Sbjct: 230 TISSLQDLSIYNPERTITVKGTVEACANAEIEI 262
Score = 77 (32.2 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 126 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 185
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 186 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 238
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 239 IYNPERTITVKGTVEACANAEIEI 262
Score = 74 (31.1 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 434 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 493
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 494 RKIREIVQQVKQQEQKYPQG 513
Score = 65 (27.9 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 121 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 178
Query: 328 I 328
I
Sbjct: 179 I 179
Score = 60 (26.2 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 437 VPSSTAGRVIGKGGKTVNELQNLTSAEV 464
Score = 60 (26.2 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 437 VPSSTAGRVIGKGGKTVNELQNLTSAEV 464
Score = 51 (23.0 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 378 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 409
Score = 51 (23.0 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 378 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 409
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 108 (43.1 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 211 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 270
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 271 REAFENDM--LAVNQQANLI 288
Score = 108 (43.1 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 211 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 270
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 271 REAFENDM--LAVNQQANLI 288
Score = 98 (39.6 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 364 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 417
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 418 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 477
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 478 ENE-EVIVR 485
Score = 87 (35.7 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 359 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 414
Score = 87 (35.7 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 359 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 414
Score = 79 (32.9 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 31/153 (20%), Positives = 70/153 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A
Sbjct: 121 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEAC 180
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I + +++ ++ K ++ I L+++ +G +
Sbjct: 181 RMILEIMQK-EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKI 233
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
++S D+ + ER + +KG +A A +I
Sbjct: 234 TISSLQDLSIYNPERTITVKGTVEACANAEIEI 266
Score = 77 (32.2 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 130 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 189
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 190 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 242
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 243 IYNPERTITVKGTVEACANAEIEI 266
Score = 74 (31.1 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 438 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 497
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 498 RKIREIVQQVKQQEQKYPQG 517
Score = 65 (27.9 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 125 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 182
Query: 328 I 328
I
Sbjct: 183 I 183
Score = 60 (26.2 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 441 VPSSTAGRVIGKGGKTVNELQNLTSAEV 468
Score = 60 (26.2 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 441 VPSSTAGRVIGKGGKTVNELQNLTSAEV 468
Score = 51 (23.0 bits), Expect = 5.7e-08, Sum P(4) = 5.7e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 382 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 413
Score = 51 (23.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 382 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 413
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 108 (43.1 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 218 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEVEIMKKL 277
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 278 REAFENDM--LAVNQQANLI 295
Score = 108 (43.1 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 218 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEVEIMKKL 277
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 278 REAFENDM--LAVNQQANLI 295
Score = 98 (39.6 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 371 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 424
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 425 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 484
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 485 ENE-EVIVR 492
Score = 87 (35.7 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 366 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 421
Score = 87 (35.7 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 366 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 421
Score = 79 (32.9 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 31/153 (20%), Positives = 70/153 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A
Sbjct: 128 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEAC 187
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I + +++ ++ K ++ I L+++ +G +
Sbjct: 188 RMILEIMQK-EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKI 240
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
++S D+ + ER + +KG +A A +I
Sbjct: 241 TISSLQDLSIYNPERTITVKGTVEACANAEVEI 273
Score = 77 (32.2 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 137 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 196
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 197 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 249
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 250 IYNPERTITVKGTVEACANAEVEI 273
Score = 74 (31.1 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 445 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 504
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 505 RKIREIVQQVKQQEQKYPQG 524
Score = 65 (27.9 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 132 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 189
Query: 328 I 328
I
Sbjct: 190 I 190
Score = 60 (26.2 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 448 VPSSTAGRVIGKGGKTVNELQNLTSAEV 475
Score = 60 (26.2 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 448 VPSSTAGRVIGKGGKTVNELQNLTSAEV 475
Score = 51 (23.0 bits), Expect = 6.1e-08, Sum P(4) = 6.1e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 389 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 420
Score = 51 (23.0 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 389 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 420
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 108 (43.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 345
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 346 REAFENDM--LAVNQQANLI 363
Score = 108 (43.1 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACANAEIEIMKKL 345
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 346 REAFENDM--LAVNQQANLI 363
Score = 98 (39.6 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 439 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 492
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 493 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 552
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 553 ENE-EVIVR 560
Score = 87 (35.7 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 434 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 489
Score = 87 (35.7 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 434 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 489
Score = 77 (32.2 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 205 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 264
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 265 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 317
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 318 IYNPERTITVKGTVEACANAEIEI 341
Score = 74 (31.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 513 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 572
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 573 RKIREIVQQVKQQEQKYPQG 592
Score = 65 (27.9 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 200 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 257
Query: 328 I 328
I
Sbjct: 258 I 258
Score = 60 (26.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 516 VPSSTAGRVIGKGGKTVNELQNLTSAEV 543
Score = 60 (26.2 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 516 VPSSTAGRVIGKGGKTVNELQNLTSAEV 543
Score = 51 (23.0 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 457 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 488
Score = 51 (23.0 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 457 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 488
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 106 (42.4 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKL 345
Query: 61 EEFHKNQ----NKHLG 72
E +N N H G
Sbjct: 346 REAFENDMLAVNTHSG 361
Score = 106 (42.4 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKL 345
Query: 506 EEFHKNQ----NKHLG 517
E +N N H G
Sbjct: 346 REAFENDMLAVNTHSG 361
Score = 98 (39.6 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 396 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 449
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 450 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 509
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 510 ENE-EVIVR 517
Score = 87 (35.7 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 391 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 446
Score = 87 (35.7 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 391 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 446
Score = 79 (32.9 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 31/153 (20%), Positives = 70/153 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAF 498
+R ++ + VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A
Sbjct: 196 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEAC 255
Query: 499 SLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
+I + +++ ++ K ++ I L+++ +G +
Sbjct: 256 RMILEIMQK-EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKI 308
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
++S D+ + ER + +KG +A A +I
Sbjct: 309 TISSLQDLSIYNPERTITVKGTVEACASAEIEI 341
Score = 77 (32.2 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 205 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 264
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 265 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 317
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 318 IYNPERTITVKGTVEACASAEIEI 341
Score = 74 (31.1 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 470 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 529
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 530 RKIREIVQQVKQQEQKYPQG 549
Score = 65 (27.9 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 200 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 257
Query: 328 I 328
I
Sbjct: 258 I 258
Score = 60 (26.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 473 VPSSTAGRVIGKGGKTVNELQNLTSAEV 500
Score = 60 (26.2 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 473 VPSSTAGRVIGKGGKTVNELQNLTSAEV 500
Score = 51 (23.0 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 414 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 445
Score = 51 (23.0 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 414 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 445
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 107 (42.7 bits), Expect = 6.8e-10, Sum P(3) = 6.8e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKL 345
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 346 REAFENDM--LAVNQQANLI 363
Score = 107 (42.7 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 286 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKL 345
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 346 REAFENDM--LAVNQQANLI 363
Score = 98 (39.6 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 439 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 492
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 493 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 552
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 553 ENE-EVIVR 560
Score = 87 (35.7 bits), Expect = 6.8e-10, Sum P(3) = 6.8e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 434 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 489
Score = 87 (35.7 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 434 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 489
Score = 77 (32.2 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 205 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 264
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 265 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 317
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 318 IYNPERTITVKGTVEACASAEIEI 341
Score = 74 (31.1 bits), Expect = 6.8e-10, Sum P(3) = 6.8e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 513 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 572
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 573 RKIREIVQQVKQQEQKYPQG 592
Score = 65 (27.9 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 200 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 257
Query: 328 I 328
I
Sbjct: 258 I 258
Score = 60 (26.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 516 VPSSTAGRVIGKGGKTVNELQNLTSAEV 543
Score = 60 (26.2 bits), Expect = 6.6e-05, Sum P(3) = 6.6e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 516 VPSSTAGRVIGKGGKTVNELQNLTSAEV 543
Score = 51 (23.0 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 457 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 488
Score = 51 (23.0 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 457 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 488
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 107 (42.7 bits), Expect = 7.0e-10, Sum P(3) = 7.0e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 292 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKL 351
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 352 REAFENDM--LAVNQQANLI 369
Score = 107 (42.7 bits), Expect = 5.7e-09, Sum P(3) = 5.7e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 292 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASAEIEIMKKL 351
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 352 REAFENDM--LAVNQQANLI 369
Score = 98 (39.6 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 445 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 498
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 499 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 558
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 559 ENE-EVIVR 566
Score = 87 (35.7 bits), Expect = 7.0e-10, Sum P(3) = 7.0e-10
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 440 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 495
Score = 87 (35.7 bits), Expect = 5.7e-09, Sum P(3) = 5.7e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 440 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 495
Score = 77 (32.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 30/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 211 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 270
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ I L+++ +G + ++S D+
Sbjct: 271 -EADETKL------AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 323
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 324 IYNPERTITVKGTVEACASAEIEI 347
Score = 74 (31.1 bits), Expect = 7.0e-10, Sum P(3) = 7.0e-10
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 519 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 578
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + K+ G
Sbjct: 579 RKIREIVQQVKQQEQKYPQG 598
Score = 65 (27.9 bits), Expect = 5.7e-09, Sum P(3) = 5.7e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ +T+ TP+ + A +
Sbjct: 206 VPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--EKPVTIHATPEGTSEACRM 263
Query: 328 I 328
I
Sbjct: 264 I 264
Score = 60 (26.2 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 522 VPSSTAGRVIGKGGKTVNELQNLTSAEV 549
Score = 60 (26.2 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 522 VPSSTAGRVIGKGGKTVNELQNLTSAEV 549
Score = 51 (23.0 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 463 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 494
Score = 51 (23.0 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 463 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 494
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 108 (43.1 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 279 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTIEACASAEMEIMKKL 338
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 339 REAFENDM--LAVNQQANLI 356
Score = 108 (43.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 279 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTIEACASAEMEIMKKL 338
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 339 REAFENDM--LAVNQQANLI 356
Score = 98 (39.6 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 432 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 485
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 486 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 545
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 546 ENE-EVIVR 553
Score = 87 (35.7 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 427 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 482
Score = 87 (35.7 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 427 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 482
Score = 80 (33.2 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 33/168 (19%), Positives = 76/168 (45%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI---SDSSTPER 483
GP ++ Q + +R ++ + VG+IIGK G T+K + +++ S++ I +S E+
Sbjct: 175 GPGSSS-QARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEK 233
Query: 484 IVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXX 543
VT+ + + A +I + +++ ++ K ++ + L+++
Sbjct: 234 PVTIHATPEGTSEACRMILEIMQK-EADETKL------AEEVPLKILAHNGFVGRLIGKE 286
Query: 544 XXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQAIYQI 589
+G + ++S D+ + ER + +KG +A A +I
Sbjct: 287 GRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTIEACASAEMEI 334
Score = 74 (31.1 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 29/144 (20%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 198 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 257
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ + L+++ +G + ++S D+
Sbjct: 258 -EADETKL------AEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 310
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG +A A +I
Sbjct: 311 IYNPERTITVKGTIEACASAEMEI 334
Score = 71 (30.1 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 506 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 565
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + K+ G
Sbjct: 566 RKIREIVQQVKQQAQKYPQG 585
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
GP + VP + +GA+IGK G I I K + + + I +
Sbjct: 175 GPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--E 232
Query: 310 RTITMTGTPDAIALAQYLI 328
+ +T+ TP+ + A +I
Sbjct: 233 KPVTIHATPEGTSEACRMI 251
Score = 60 (26.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 509 VPSSTAGRVIGKGGKTVNELQNLTSAEV 536
Score = 60 (26.2 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 509 VPSSTAGRVIGKGGKTVNELQNLTSAEV 536
Score = 51 (23.0 bits), Expect = 4.2e-08, Sum P(4) = 4.2e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 450 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 481
Score = 51 (23.0 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 450 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 481
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 108 (43.1 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 279 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVRGTIEACANAEIEIMKKL 338
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E +N L N ++ LI
Sbjct: 339 REAFENDM--LAVNQQANLI 356
Score = 108 (43.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E+G+KI IS D S PER +TV G++++ A I K +
Sbjct: 279 VGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVRGTIEACANAEIEIMKKL 338
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E +N L N ++ LI
Sbjct: 339 REAFENDM--LAVNQQANLI 356
Score = 98 (39.6 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G +K+L +G+ I I+ + P ER+V + G ++ F+A I
Sbjct: 432 VGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI------ 485
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
F K + ++ E ++ + VP+S + + A V V D P+
Sbjct: 486 FGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPD 545
Query: 568 STEREVNIK 576
E EV ++
Sbjct: 546 ENE-EVIVR 553
Score = 87 (35.7 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 427 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 482
Score = 87 (35.7 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I ++R + +TG P+A AQ
Sbjct: 427 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV--SERMVIITGPPEAQFKAQ 482
Score = 71 (30.1 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ IV +IG + A
Sbjct: 506 HIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQ 565
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + +++ + + ++ G
Sbjct: 566 RKIREIVQQVKQQEQRYPQG 585
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 28/144 (19%), Positives = 65/144 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ S++ I +S E+ VT+ + + A +I + +++
Sbjct: 198 VGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMILEIMQK 257
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
++ K ++ + L+++ +G + ++S D+
Sbjct: 258 -EADETKL------AEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 310
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + ++G +A A +I
Sbjct: 311 IYNPERTITVRGTIEACANAEIEI 334
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
GP + VP + +GA+IGK G I I K + + + I +
Sbjct: 175 GPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA--E 232
Query: 310 RTITMTGTPDAIALAQYLI 328
+ +T+ TP+ + A +I
Sbjct: 233 KPVTIHATPEGTSEACRMI 251
Score = 60 (26.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 509 VPSSTAGRVIGKGGKTVNELQNLTSAEV 536
Score = 60 (26.2 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 509 VPSSTAGRVIGKGGKTVNELQNLTSAEV 536
Score = 51 (23.0 bits), Expect = 4.2e-08, Sum P(4) = 4.2e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 450 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 481
Score = 51 (23.0 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ +ER V I G P+A +A
Sbjct: 450 AGASIKIAPAEGPDVSERMVIITGPPEAQFKA 481
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 104 (41.7 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ E++ +KI IS PER + V GS+++ RA I K +
Sbjct: 290 VGRLIGKEGRNLKKIEEDTETKITISSLQDLTIYNPERTIIVKGSIEACCRAEVEIMKKL 349
Query: 506 EEFHKNQNKHLGGNGESQLI 525
E ++N + N +S LI
Sbjct: 350 REAYENDVAAI--NQQSNLI 367
Score = 104 (41.7 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ E++ +KI IS PER + V GS+++ RA I K +
Sbjct: 290 VGRLIGKEGRNLKKIEEDTETKITISSLQDLTIYNPERTIIVKGSIEACCRAEVEIMKKL 349
Query: 61 EEFHKNQNKHLGGNGESQLI 80
E ++N + N +S LI
Sbjct: 350 REAYENDVAAI--NQQSNLI 367
Score = 103 (41.3 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 37/156 (23%), Positives = 69/156 (44%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE- 482
VP ++ T Q + + + VG+IIGK G+ +K+L +G+ I I+ + +P+
Sbjct: 418 VPPASGISHQHTAPEQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDV 477
Query: 483 --RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXX 540
R+V + G ++ F+A I F K + ++ E ++ + VP+S
Sbjct: 478 TQRMVIITGPPEAQFKAQGRI------FGKLKEENFFTAKEEVKLETHIKVPSSAAGRVI 531
Query: 541 XXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 576
+ + A V V D P+ + EV +K
Sbjct: 532 GKGGKTVNELQNLTSAEVIVPRDQTPDEND-EVFVK 566
Score = 84 (34.6 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 440 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVT--QRMVIITGPPEAQFKAQ 495
Score = 84 (34.6 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 440 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVT--QRMVIITGPPEAQFKAQ 495
Score = 76 (31.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M VP + +GA+IGK G I I K + + + I ++ IT+ TP+ + A
Sbjct: 202 MLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGAA--EKPITIHSTPEGCSTAC 259
Query: 326 YLI 328
++I
Sbjct: 260 HMI 262
Score = 72 (30.4 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ V + G + A
Sbjct: 519 HIKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDEVFVKISGHFFASQTAQ 578
Query: 499 SLITKNIEEFHKNQNKHLGG 518
I + I++ + + KH G
Sbjct: 579 RKIREIIQQVKQQEQKHQQG 598
Score = 66 (28.3 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLI 56
VG+IIGK G T+K + +++ SK+ I ++ E+ +T+ + + A +I
Sbjct: 209 VGAIIGKEGLTIKNITKQTQSKVDIHRKENAGAAEKPITIHSTPEGCSTACHMI 262
Score = 60 (26.2 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 522 VPSSAAGRVIGKGGKTVNELQNLTSAEV 549
Score = 60 (26.2 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP+ G VIGKGG + E++ ++ A +
Sbjct: 522 VPSSAAGRVIGKGGKTVNELQNLTSAEV 549
Score = 54 (24.1 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+GAS+ +A P+ T+R V I G P+A +A
Sbjct: 463 AGASIKIAPAESPDVTQRMVIITGPPEAQFKA 494
Score = 54 (24.1 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+GAS+ +A P+ T+R V I G P+A +A
Sbjct: 463 AGASIKIAPAESPDVTQRMVIITGPPEAQFKA 494
>UNIPROTKB|Q7JPS0 [details] [associations]
symbol:Psi "PSI" species:7242 "Drosophila sp." [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IMP] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA;IMP] [GO:0005685 "U1 snRNP" evidence=IPI]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003729 GO:GO:0006397
GO:GO:0007283 GO:GO:0048025 GO:GO:0000381 InterPro:IPR015096
Pfam:PF09005 PDB:2BN5 PDBsum:2BN5 FlyBase:FBgn0014870 EMBL:S75665
PDB:2BN6 PDBsum:2BN6 ProteinModelPortal:Q7JPS0 SMR:Q7JPS0
InParanoid:Q7JPS0 EvolutionaryTrace:Q7JPS0 Uniprot:Q7JPS0
Length = 796
Score = 97 (39.2 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 445 IMQGKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI--VTVIGSMDSLFRAFSLI 501
++ G +VG +IGK G+T+K+L+E++G+K I I D E I + + G + A ++
Sbjct: 217 MIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISGEAQKIEHAKQMV 276
Query: 502 TKNIEEFHKNQNKHLGGNG 520
I + Q + GG G
Sbjct: 277 LDLIAQ-KDAQGQQQGGRG 294
Score = 96 (38.9 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI--VTVIGSMDSLFRAFSLITKN 59
G +VG +IGK G+T+K+L+E++G+K I I D E I + + G + A ++
Sbjct: 220 GAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISGEAQKIEHAKQMVLDL 279
Query: 60 IEEFHKNQNKHLGGNG 75
I + Q + GG G
Sbjct: 280 IAQ-KDAQGQQQGGRG 294
Score = 89 (36.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 427 GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS-DSSTP--ER 483
G Y G + + ++ + G +IG+ GET+K + ++SG+ + ++S P E+
Sbjct: 414 GYGYGVNHAQGGREEITFLVPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNPPNEK 473
Query: 484 IVTVIGSMDSLFRAFSLITKNIE-EFHKNQNKHLGG 518
+ G+ D + A +I++ I E + K +GG
Sbjct: 474 LFKSKGTTDQVEAARQMISEKINMELNVISRKPIGG 509
Score = 83 (34.3 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 29/96 (30%), Positives = 42/96 (43%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP +G VIGKGG I +I+ G ++ DR + GT + A
Sbjct: 319 EVFVPKIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEM--GDRRCVIQGTRQQVDDA 376
Query: 325 QYLINMSVE--LLR--ANLNGEGGGESNMDDFSSDN 356
+ I+ +E + R N NG GGG D + N
Sbjct: 377 KRTIDGLIENVMQRNGMNRNGNGGGGGPGGDSGNSN 412
Score = 83 (34.3 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 29/96 (30%), Positives = 42/96 (43%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VP +G VIGKGG I +I+ G ++ DR + GT + A
Sbjct: 319 EVFVPKIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEM--GDRRCVIQGTRQQVDDA 376
Query: 770 QYLINMSVE--LLR--ANLNGEGGGESNMDDFSSDN 801
+ I+ +E + R N NG GGG D + N
Sbjct: 377 KRTIDGLIENVMQRNGMNRNGNGGGGGPGGDSGNSN 412
Score = 75 (31.5 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 27/87 (31%), Positives = 39/87 (44%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 772
VP G VIG+GG I I + SGA + N++ GT D + A+ +
Sbjct: 433 VPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNPP--NEKLFKSKGTTDQVEAARQM 490
Query: 773 I----NMSVELL-RANLNG-EGGGESN 793
I NM + ++ R + G GGG N
Sbjct: 491 ISEKINMELNVISRKPIGGGPGGGGGN 517
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 27/87 (31%), Positives = 39/87 (44%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP G VIG+GG I I + SGA + N++ GT D + A+ +
Sbjct: 433 VPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNPP--NEKLFKSKGTTDQVEAARQM 490
Query: 328 I----NMSVELL-RANLNG-EGGGESN 348
I NM + ++ R + G GGG N
Sbjct: 491 ISEKINMELNVISRKPIGGGPGGGGGN 517
Score = 73 (30.8 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 37/189 (19%), Positives = 71/189 (37%)
Query: 7 GSIIGKSG-ETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHK 65
G+ +G+S +T+ ++ ESG K+ + +R++ + G D+ +TK E
Sbjct: 134 GAFMGRSSNDTITHIQAESGVKVQVMQDQ--DRVIMLRGQRDT-------VTKGREMIQN 184
Query: 66 NQNKHLGGNGESQL-IQL------------RLIVPASQCXXXXXXXXXXXXXXRETSGAS 112
N+ GG E L I + +++P ++ +E +GA
Sbjct: 185 MANRAGGGQVEVLLTINMPPPGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAK 244
Query: 113 VYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGL 172
+ + D + + I G + A + ++ +G R GGPG+
Sbjct: 245 MIIIQDGPNQELIKPLRISGEAQKIEHAKQMVLDLIAQKDAQGQQQGGRGGGGGGGGPGM 304
Query: 173 IGNQFGMQN 181
N F N
Sbjct: 305 GFNNFNNGN 313
Score = 73 (30.8 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGS---MDSLFRAFSLITKN 504
VG +IGK G+ ++K++ E G K+ E R + G+ +D R + +N
Sbjct: 327 VGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEMGDRRCVIQGTRQQVDDAKRTIDGLIEN 386
Query: 505 IEEFH-KNQNKHLGGNG 520
+ + + N+N + GG G
Sbjct: 387 VMQRNGMNRNGNGGGGG 403
Score = 65 (27.9 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
E+ +P +G VIGKGG I ++++ +GA + I
Sbjct: 215 EIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMII 247
Score = 61 (26.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 25/102 (24%), Positives = 40/102 (39%)
Query: 526 QLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
++ +VPAS+C + SGA + + E+ KG D V +A
Sbjct: 428 EITFLVPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQV-EA 486
Query: 586 IYQICLIMVDSPPKGATIPYRPLPQNAGGPGLIGNQFGMQNS 627
Q+ ++ I +P+ GG G GN G QN+
Sbjct: 487 ARQMISEKINMELN--VISRKPIGGGPGGGG--GNSGGGQNN 524
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 135 (52.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 46/175 (26%), Positives = 82/175 (46%)
Query: 425 PQ-GPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSS--TP 481
PQ GP + ++T V R + G VG IIG+ GE + K++++SG K+ IS S P
Sbjct: 195 PQLGPMHPPPRSTTVTEEYR-VPDGM-VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP 252
Query: 482 ERIVTVIGSMDSLFRAFSLITKNIEEFHKNQ--NKHLGGNGESQLIQLRLIVPASQCXXX 539
ER V++ GS +++ +A ++ + H NG++ +Q +++PA +
Sbjct: 253 ERSVSLTGSPEAVQKAKLMLDDIVSRGRGGPPGQFHDYANGQNGTVQ-EIMIPAGKAGLV 311
Query: 540 XXXXXXXXXXXRETSGASVYVASDMLPNST-EREVNIKGVPDAVTQAIYQICLIM 593
+E +G + D N+ ++ + I G P V QA + I+
Sbjct: 312 IGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 366
Score = 125 (49.1 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 38/148 (25%), Positives = 70/148 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + K++++SG K+ IS S PER V++ GS +++ +A ++ +
Sbjct: 220 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLMLDDIVSRG 279
Query: 64 HKNQ--NKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLP 121
H NG++ +Q +++PA + +E +G + D
Sbjct: 280 RGGPPGQFHDYANGQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQ 338
Query: 122 NST-EREVNIKGVPDAVTQAIYQICLIM 148
N+ ++ + I G P V QA + I+
Sbjct: 339 NTNVDKPLRIIGDPYKVQQACEMVMDIL 366
Score = 109 (43.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 25/93 (26%), Positives = 51/93 (54%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I +I++ SG ++I +R++++TG+P+A+ A
Sbjct: 212 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGSPEAVQKA 268
Query: 325 QYLINMSVELLRANLNGEGGGESNMDDFSSDNN 357
+ +++ V G GG D+++ N
Sbjct: 269 KLMLDDIVS------RGRGGPPGQFHDYANGQN 295
Score = 95 (38.5 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 42/186 (22%), Positives = 72/186 (38%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS--DSSTPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG +IG+SGE +KK++ ++G +I D + PE+I ++G + A +I ++
Sbjct: 397 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPERCEHAARIINDLLQSL 456
Query: 509 HKNQNKHLG--------GNGESQLI------QLRLIVPASQCXXXXXXXXXXXXXXRETS 554
G G G Q I ++ +P +C +
Sbjct: 457 RSGPPGPPGHGMPPGGRGRGRGQGIWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQR 516
Query: 555 GASVYVASDMLPNSTEREVNIK-GVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAG 613
GA V ++ + PN + N K + Q I + ++ +G P P P G
Sbjct: 517 GAFVEISRQLPPNG---DPNFKLFIIRGSPQQI-EHAKQPIEEKIEGPLCPVGPGPGPGG 572
Query: 614 GPGLIG 619
PG G
Sbjct: 573 PPGPAG 578
Score = 83 (34.3 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI---VTVIGSMDSLFRAFSLITK 58
GK G +IGK GET+K+L+E +G K I+I D S + + +IG + +A ++
Sbjct: 306 GK-AGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 364
Query: 59 NIEE 62
+ E
Sbjct: 365 ILRE 368
Score = 75 (31.5 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 710 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 767
EMT +P G VIG+GG + I + GA + I N + + G+P I
Sbjct: 488 EMTFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIE 547
Query: 768 LAQYLINMSVE 778
A+ I +E
Sbjct: 548 HAKQPIEEKIE 558
Score = 75 (31.5 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 265 EMT--VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIA 322
EMT +P G VIG+GG + I + GA + I N + + G+P I
Sbjct: 488 EMTFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIE 547
Query: 323 LAQYLINMSVE 333
A+ I +E
Sbjct: 548 HAKQPIEEKIE 558
Score = 70 (29.7 bits), Expect = 7.7e-05, Sum P(2) = 7.6e-05
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +P G VIGKGG I ++++ +G + I D+ + + G P +
Sbjct: 300 EIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IFIQDGSQNTNVDKPLRIIGDPYKV--- 355
Query: 770 QYLINMSVELLRANLNGEGGGESN 793
Q M +++LR G G G+ N
Sbjct: 356 QQACEMVMDILRERDQG-GFGDRN 378
Score = 65 (27.9 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VP +G VIG+ G I +I+ +G I+ ++ + G P+ A
Sbjct: 389 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPERCEHA 445
Query: 325 QYLINMSVELLRANLNGEGG 344
+IN ++ LR+ G G
Sbjct: 446 ARIINDLLQSLRSGPPGPPG 465
Score = 65 (27.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VP +G VIG+ G I +I+ +G I+ ++ + G P+ A
Sbjct: 389 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP---EKIAHIMGPPERCEHA 445
Query: 770 QYLINMSVELLRANLNGEGG 789
+IN ++ LR+ G G
Sbjct: 446 ARIINDLLQSLRSGPPGPPG 465
Score = 45 (20.9 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 598 PKGATIPYRPLPQNAGGPG 616
P G P+ P P N G PG
Sbjct: 576 PAGPMGPFNPGPFNQGPPG 594
Score = 45 (20.9 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 153 PKGATIPYRPLPQNAGGPG 171
P G P+ P P N G PG
Sbjct: 576 PAGPMGPFNPGPFNQGPPG 594
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 108 (43.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 33/147 (22%), Positives = 65/147 (44%)
Query: 430 YANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVT 486
Y++ Q ++ + + VG+IIGK G+ +K+L + + I I+ TP+ R+V
Sbjct: 396 YSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVV 455
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 546
+ G ++ F+A I ++E ++ G E ++ + VPAS
Sbjct: 456 ITGPPEAQFKAQGRIYGKLKE------ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKT 509
Query: 547 XXXXRETSGASVYVASDMLPNSTEREV 573
+ + A V V D P+ ++ +
Sbjct: 510 VNELQNLTAAEVVVPRDQTPDENDQVI 536
Score = 103 (41.3 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 REAYEN 353
Score = 103 (41.3 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 REAYEN 353
Score = 82 (33.9 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT 502
HI + G +IGK G+TV +L+ + +++ + TP+ VI + F A +
Sbjct: 491 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQ 550
Query: 503 KNIEEFHKNQNKHLGGNGESQLIQLR 528
+ I + Q K G+S L Q R
Sbjct: 551 RKIRDILA-QVKQQHQKGQSNLAQAR 575
Score = 75 (31.5 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVVITGPPEAQFKA 466
Query: 325 Q 325
Q
Sbjct: 467 Q 467
Score = 75 (31.5 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVVITGPPEAQFKA 466
Query: 770 Q 770
Q
Sbjct: 467 Q 467
Score = 69 (29.3 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ ++V + + A +I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 65 (27.9 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 200 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKAISVHSTPEGCSSAC 257
Query: 326 YLI 328
+I
Sbjct: 258 KMI 260
Score = 58 (25.5 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLIN 329
N +G +IGK G + ++ + + I I +RTIT+ G + A+ I
Sbjct: 285 NNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIM 344
Query: 330 MSV 332
V
Sbjct: 345 KKV 347
Score = 57 (25.1 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 57 (25.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 49 (22.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/100 (20%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ +++ P+ +
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSS 255
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 256 ACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKE 295
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 109 (43.4 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS D + PER +TV G++D+ +A I K +
Sbjct: 287 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGTLDACAKAEEEIMKKV 346
Query: 61 EEFHKNQ--NKHLGGN 74
E ++N HL N
Sbjct: 347 RESYENDVAAMHLQSN 362
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS D + PER +TV G++D+ +A I K +
Sbjct: 287 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGTLDACAKAEEEIMKKV 346
Query: 506 EEFHKNQ--NKHLGGN 519
E ++N HL N
Sbjct: 347 RESYENDVAAMHLQSN 362
Score = 94 (38.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 37/155 (23%), Positives = 66/155 (42%)
Query: 425 PQGPNYANIQTTGVQRRMR--HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSS-- 479
P G A Q+ G Q H+ + VG+IIGK G+ +K+L +G+ I I+ +
Sbjct: 392 PPGAQ-AGYQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGI 450
Query: 480 -TPERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXX 538
+R+V + G ++ F+A I F K + ++ G E ++ + VP+
Sbjct: 451 DAKQRMVIISGPPEAQFKAQGRI------FGKLKEENFFGPKEEVKLEAHIKVPSFAAGR 504
Query: 539 XXXXXXXXXXXXRETSGASVYVASDMLPNSTEREV 573
+ + A V V D P+ ++ V
Sbjct: 505 VIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVV 539
Score = 76 (31.8 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 507
G +IGK G+TV +L+ + +++ + TP+ V+ + F A L + I+E
Sbjct: 503 GRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQLAQRKIQE 558
Score = 74 (31.1 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + ++G P+A AQ
Sbjct: 415 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDA--KQRMVIISGPPEAQFKAQ 470
Score = 74 (31.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + ++G P+A AQ
Sbjct: 415 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDA--KQRMVIISGPPEAQFKAQ 470
Score = 71 (30.1 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 31/144 (21%), Positives = 62/144 (43%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI I ++ E+ +TV + + A +NI E
Sbjct: 206 VGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITVHSTPEGCSSA----CRNIME 261
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA--SDML 120
K ++ I L+++ + + + + ++ D+
Sbjct: 262 I---MQKEAIDTKITEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLT 318
Query: 121 PNSTEREVNIKGVPDAVTQAIYQI 144
+ ER + +KG DA +A +I
Sbjct: 319 LYNPERTITVKGTLDACAKAEEEI 342
Score = 69 (29.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP + +GA+IGK G I I K + + I I ++ IT+ TP+ + A
Sbjct: 199 LLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAA--EKPITVHSTPEGCSSA 255
Score = 64 (27.6 bits), Expect = 7.5e-08, Sum P(4) = 7.5e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQY 771
VP+ G VIGKGG + E++ ++ A + + ND+ + +TG A LAQ
Sbjct: 497 VPSFAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDQVVVKITGHFYASQLAQR 554
Query: 772 LINMSVELLR 781
I + +R
Sbjct: 555 KIQEIISQVR 564
Score = 64 (27.6 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQY 326
VP+ G VIGKGG + E++ ++ A + + ND+ + +TG A LAQ
Sbjct: 497 VPSFAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDQVVVKITGHFYASQLAQR 554
Query: 327 LINMSVELLR 336
I + +R
Sbjct: 555 KIQEIISQVR 564
Score = 43 (20.2 bits), Expect = 7.5e-08, Sum P(4) = 7.5e-08
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA-SDMLPNSTEREVNI 575
G ES+ + L +PA +GAS+ +A +D + ++ +R V I
Sbjct: 403 GAQMESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGI-DAKQRMVII 459
Query: 576 KGVPDAVTQA 585
G P+A +A
Sbjct: 460 SGPPEAQFKA 469
Score = 43 (20.2 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 72 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVA-SDMLPNSTEREVNI 130
G ES+ + L +PA +GAS+ +A +D + ++ +R V I
Sbjct: 403 GAQMESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGI-DAKQRMVII 459
Query: 131 KGVPDAVTQA 140
G P+A +A
Sbjct: 460 SGPPEAQFKA 469
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 105 (42.0 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV GS+++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCAKAEEEIMKKI 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 RESYEN 353
Score = 105 (42.0 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV GS+++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCAKAEEEIMKKI 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 RESYEN 353
Score = 94 (38.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P+ R+V + G ++ F+A I I+E
Sbjct: 417 VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRIYGKIKE 476
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
+ K E ++ + VP+ + S A V V D P+
Sbjct: 477 ENFVSPK------EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVPRDQTPD 530
Query: 568 STEREV 573
++ V
Sbjct: 531 ENDQVV 536
Score = 79 (32.9 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKN 511
G +IGK G+TV +L+ S +++ + TP+ V+ + F A + + I+E
Sbjct: 500 GRVIGKGGKTVNELQSLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 559
Query: 512 QNKH 515
+H
Sbjct: 560 VKQH 563
Score = 75 (31.5 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 467
Score = 75 (31.5 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 467
Score = 72 (30.4 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP + +GA+IGK G I I K + + I + +++IT+ TP+ + A
Sbjct: 200 LLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAA--EKSITILSTPEGTSAA 256
Score = 72 (30.4 bits), Expect = 2.6e-08, Sum P(4) = 2.6e-08
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ +T++ + + A I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILSTPEGTSAACKSI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 65 (27.9 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
N +G +IGK G + +I + + I I +RTIT+ G+ + A A+
Sbjct: 285 NNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCAKAE 340
Score = 62 (26.9 bits), Expect = 2.6e-08, Sum P(4) = 2.6e-08
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 770
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQSLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 550
Score = 62 (26.9 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 325
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQSLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 550
Score = 51 (23.0 bits), Expect = 2.6e-08, Sum P(4) = 2.6e-08
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 51 (23.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 37 (18.1 bits), Expect = 6.3e-05, Sum P(4) = 6.3e-05
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
+ LRL+VP + + + + V + E+ + I P+ +
Sbjct: 196 LPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILSTPEGTSA 255
Query: 140 AIYQICLIM 148
A I IM
Sbjct: 256 ACKSILEIM 264
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 107 (42.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/147 (22%), Positives = 65/147 (44%)
Query: 430 YANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVT 486
Y++ Q ++ + + VG+IIGK G+ +K+L + + I I+ TP+ R+V
Sbjct: 396 YSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVI 455
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 546
+ G ++ F+A I ++E ++ G E ++ + VPAS
Sbjct: 456 ITGPPEAQFKAQGRIYGKLKE------ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKT 509
Query: 547 XXXXRETSGASVYVASDMLPNSTEREV 573
+ + A V V D P+ ++ +
Sbjct: 510 VNELQNLTAAEVVVPRDQTPDENDQVI 536
Score = 103 (41.3 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 REAYEN 353
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 REAYEN 353
Score = 82 (33.9 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT 502
HI + G +IGK G+TV +L+ + +++ + TP+ VI + F A +
Sbjct: 491 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQ 550
Query: 503 KNIEEFHKNQNKHLGGNGESQLIQLR 528
+ I + Q K L G+S Q R
Sbjct: 551 RKIRDILA-QVKQLHQKGQSNQAQAR 575
Score = 74 (31.1 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 325 Q 325
Q
Sbjct: 467 Q 467
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 770 Q 770
Q
Sbjct: 467 Q 467
Score = 69 (29.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ ++V + + A +I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 65 (27.9 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 200 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKAISVHSTPEGCSSAC 257
Query: 326 YLI 328
+I
Sbjct: 258 KMI 260
Score = 58 (25.5 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLIN 329
N +G +IGK G + ++ + + I I +RTIT+ G + A+ I
Sbjct: 285 NNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIM 344
Query: 330 MSV 332
V
Sbjct: 345 KKV 347
Score = 57 (25.1 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 57 (25.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 49 (22.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/100 (20%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ +++ P+ +
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSS 255
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 256 ACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKE 295
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 107 (42.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/147 (22%), Positives = 65/147 (44%)
Query: 430 YANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVT 486
Y++ Q ++ + + VG+IIGK G+ +K+L + + I I+ TP+ R+V
Sbjct: 396 YSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVI 455
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 546
+ G ++ F+A I ++E ++ G E ++ + VPAS
Sbjct: 456 ITGPPEAQFKAQGRIYGKLKE------ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKT 509
Query: 547 XXXXRETSGASVYVASDMLPNSTEREV 573
+ + A V V D P+ ++ +
Sbjct: 510 VNELQNLTAAEVVVPRDQTPDENDQVI 536
Score = 103 (41.3 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 REAYEN 353
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 REAYEN 353
Score = 82 (33.9 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT 502
HI + G +IGK G+TV +L+ + +++ + TP+ VI + F A +
Sbjct: 491 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQ 550
Query: 503 KNIEEFHKNQNKHLGGNGESQLIQLR 528
+ I + Q K L G+S Q R
Sbjct: 551 RKIRDILA-QVKQLHQKGQSNQAQAR 575
Score = 74 (31.1 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 325 Q 325
Q
Sbjct: 467 Q 467
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 770 Q 770
Q
Sbjct: 467 Q 467
Score = 69 (29.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ ++V + + A +I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 65 (27.9 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 200 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKAISVHSTPEGCSSAC 257
Query: 326 YLI 328
+I
Sbjct: 258 KMI 260
Score = 58 (25.5 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLIN 329
N +G +IGK G + ++ + + I I +RTIT+ G + A+ I
Sbjct: 285 NNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIM 344
Query: 330 MSV 332
V
Sbjct: 345 KKV 347
Score = 57 (25.1 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 57 (25.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 49 (22.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/100 (20%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ +++ P+ +
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSS 255
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 256 ACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKE 295
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 107 (42.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/147 (22%), Positives = 65/147 (44%)
Query: 430 YANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVT 486
Y++ Q ++ + + VG+IIGK G+ +K+L + + I I+ TP+ R+V
Sbjct: 396 YSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVI 455
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 546
+ G ++ F+A I ++E ++ G E ++ + VPAS
Sbjct: 456 ITGPPEAQFKAQGRIYGKLKE------ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKT 509
Query: 547 XXXXRETSGASVYVASDMLPNSTEREV 573
+ + A V V D P+ ++ +
Sbjct: 510 VNELQNLTAAEVVVPRDQTPDENDQVI 536
Score = 103 (41.3 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 REAYEN 353
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 REAYEN 353
Score = 82 (33.9 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT 502
HI + G +IGK G+TV +L+ + +++ + TP+ VI + F A +
Sbjct: 491 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQ 550
Query: 503 KNIEEFHKNQNKHLGGNGESQLIQLR 528
+ I + Q K L G+S Q R
Sbjct: 551 RKIRDILA-QVKQLHQKGQSNQAQAR 575
Score = 74 (31.1 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 325 Q 325
Q
Sbjct: 467 Q 467
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 770 Q 770
Q
Sbjct: 467 Q 467
Score = 69 (29.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ ++V + + A +I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 65 (27.9 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 200 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKAISVHSTPEGCSSAC 257
Query: 326 YLI 328
+I
Sbjct: 258 KMI 260
Score = 58 (25.5 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLIN 329
N +G +IGK G + ++ + + I I +RTIT+ G + A+ I
Sbjct: 285 NNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIM 344
Query: 330 MSV 332
V
Sbjct: 345 KKV 347
Score = 57 (25.1 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 57 (25.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 49 (22.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/100 (20%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ +++ P+ +
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSS 255
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 256 ACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKE 295
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 106 (42.4 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGS 490
TT +++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G
Sbjct: 126 TTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGE 185
Query: 491 MDSLFRAFSLITKNIEE 507
+ +A LI + I+E
Sbjct: 186 PEQNRKAVELIIQKIQE 202
Score = 101 (40.6 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 21 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 80
Query: 62 EFHKNQNK 69
E +N K
Sbjct: 81 EMPQNVAK 88
Score = 101 (40.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 21 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 80
Query: 507 EFHKNQNK 514
E +N K
Sbjct: 81 EMPQNVAK 88
Score = 85 (35.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 12 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 68
Score = 84 (34.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 134 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 192
Query: 325 QYLINMSVE 333
LI ++
Sbjct: 193 VELIIQKIQ 201
Score = 84 (34.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + + + SGA +++ +R +T++G P+ A
Sbjct: 134 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 192
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 193 VELIIQKIQ 201
Score = 64 (27.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 77 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 134
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 128 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 186
Query: 135 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 178
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 187 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 228
Score = 64 (27.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 522 SQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVP 579
S+ Q+++IVP S E SGA V ++ D + N ER V + G P
Sbjct: 128 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEP 186
Query: 580 DAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGGPGLIGNQFG 623
+ +A+ I + + P G+ I Y N GP N G
Sbjct: 187 EQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTGPVANSNPTG 228
Score = 52 (23.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 82 LRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DMLPNSTEREVNIKGVPDAVTQ 139
L++++P+ ++ +GA++ ++ D P +TER I+G +A+
Sbjct: 11 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN- 69
Query: 140 AIYQICLIMVDSPPKGA--TIPYRPL-PQNAGGPGLI 173
A++ + P+ T P L PQ P I
Sbjct: 70 AVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRI 106
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 100 (40.3 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSST--PERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++G+KI IS D + ER ++V G ++ +A I K +
Sbjct: 152 VGRLIGKEGRNLKKIEQDTGTKITISALQDLTVYNQERTISVRGGVEECCKAEGEIMKKL 211
Query: 61 EEFHKN 66
E H+N
Sbjct: 212 REAHEN 217
Score = 100 (40.3 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSST--PERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++G+KI IS D + ER ++V G ++ +A I K +
Sbjct: 152 VGRLIGKEGRNLKKIEQDTGTKITISALQDLTVYNQERTISVRGGVEECCKAEGEIMKKL 211
Query: 506 EEFHKN 511
E H+N
Sbjct: 212 REAHEN 217
Score = 96 (38.9 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 35/151 (23%), Positives = 67/151 (44%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIV 485
NY+ + G Q + + VG++IGK G+ +K+L +G+ I I+ +P ER+V
Sbjct: 262 NYSPLLQGGEQEVVYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMV 321
Query: 486 TVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXX 545
+ G ++ F+A I ++E + K E ++ + VP++
Sbjct: 322 IITGPPEAQFKAQGRIYGKLKEENFFTAK------EEVKLEAHIKVPSTAAGRVIGKGGK 375
Query: 546 XXXXXRETSGASVYVASDMLPNSTEREVNIK 576
+ + A V V D P+ + +V +K
Sbjct: 376 TVNELQNLTSAEVIVPRDQTPDEND-DVFVK 405
Score = 82 (33.9 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 27/132 (20%), Positives = 63/132 (47%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T+K + +++ SK+ I ++ E+ +T+ S + +A +I + +E+
Sbjct: 71 VGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKAITIHSSKEGCSQACRMILEIMEK 130
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVAS--DML 120
N K + + + L+++ S + +G + +++ D+
Sbjct: 131 -EANDTKIV------EEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDLT 183
Query: 121 PNSTEREVNIKG 132
+ ER ++++G
Sbjct: 184 VYNQERTISVRG 195
Score = 79 (32.9 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I E+ +GA I+I +R + +TG P+A AQ
Sbjct: 279 IPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEP--ERMVIITGPPEAQFKAQ 334
Score = 79 (32.9 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I E+ +GA I+I +R + +TG P+A AQ
Sbjct: 279 IPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEP--ERMVIITGPPEAQFKAQ 334
Score = 74 (31.1 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPER----IVTVIGSMDSLFRAF 498
HI + G +IGK G+TV +L+ + +++ + TP+ V +IG + A
Sbjct: 358 HIKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDDVFVKIIGHFFASQTAQ 417
Query: 499 SLITKNIEEFHKNQNKH 515
I + +++ + + KH
Sbjct: 418 RKIREIVQQVKQQERKH 434
Score = 59 (25.8 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP+ G VIGKGG + E++ ++ A +
Sbjct: 361 VPSTAAGRVIGKGGKTVNELQNLTSAEV 388
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
VP + +GA+IGK G I I K + + + I ++ IT+ + + + A
Sbjct: 66 VPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGAT--EKAITIHSSKEGCSQA--- 120
Query: 328 INMSVELLRANLN 340
M +E++ N
Sbjct: 121 CRMILEIMEKEAN 133
Score = 58 (25.5 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 29/132 (21%), Positives = 51/132 (38%)
Query: 459 GETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT-----KNIEEFHKNQN 513
GE +KKLRE + + + T + ++ S++ + N +
Sbjct: 205 GEIMKKLREAHENDVASVNQQTNMMAGLNLSALGIFSSGMSVLPPASGLRGSLSTPANYS 264
Query: 514 KHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREV 573
L G GE +++ L +P +GAS+ +A+ P+ ER V
Sbjct: 265 PLLQG-GEQEVVYL--FIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMV 321
Query: 574 NIKGVPDAVTQA 585
I G P+A +A
Sbjct: 322 IITGPPEAQFKA 333
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 106 (42.4 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS+++ +A I K I
Sbjct: 289 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKAEEEIMKKI 348
Query: 61 EEFHKN 66
E ++N
Sbjct: 349 RESYEN 354
Score = 106 (42.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS+++ +A I K I
Sbjct: 289 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKAEEEIMKKI 348
Query: 506 EEFHKN 511
E ++N
Sbjct: 349 RESYEN 354
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 30/126 (23%), Positives = 57/126 (45%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P+ R+V + G ++ F+A I ++E
Sbjct: 421 VGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRIYGKLKE 480
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
++ G E ++ + VP+ + + A V V D P+
Sbjct: 481 ------ENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPD 534
Query: 568 STEREV 573
++ V
Sbjct: 535 ENDQVV 540
Score = 76 (31.8 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 507
G +IGK G+TV +L+ + +++ + TP+ V+ + F A L + I+E
Sbjct: 504 GRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYACQLAQRKIQE 559
Score = 75 (31.5 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 416 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL--RMVIITGPPEAQFKAQ 471
Score = 75 (31.5 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 416 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL--RMVIITGPPEAQFKAQ 471
Score = 74 (31.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M VP + +GA+IGK G I I K + + I I ++ IT+ TP+ + A
Sbjct: 201 MLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAA--EKPITIHSTPEGCSTAC 258
Query: 326 YLI 328
+I
Sbjct: 259 KII 261
Score = 68 (29.0 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI I ++ E+ +T+ + + A +I + +++
Sbjct: 208 VGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTPEGCSTACKIIMEIMQK 267
Score = 63 (27.2 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 770
VP+ G VIGKGG + E++ ++ A + + ND+ + +TG A LAQ
Sbjct: 498 VPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDQVVVKITGHFYACQLAQ 554
Score = 63 (27.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 325
VP+ G VIGKGG + E++ ++ A + + ND+ + +TG A LAQ
Sbjct: 498 VPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDQVVVKITGHFYACQLAQ 554
Score = 46 (21.3 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 576
G ES+ + L +PA +GAS+ +A P++ R V I
Sbjct: 404 GQQPESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIIT 461
Query: 577 GVPDAVTQA 585
G P+A +A
Sbjct: 462 GPPEAQFKA 470
Score = 46 (21.3 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 72 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 131
G ES+ + L +PA +GAS+ +A P++ R V I
Sbjct: 404 GQQPESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIIT 461
Query: 132 GVPDAVTQA 140
G P+A +A
Sbjct: 462 GPPEAQFKA 470
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 102 (41.0 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKI 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 RESYEN 353
Score = 102 (41.0 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKI 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 RESYEN 353
Score = 94 (38.1 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P+ R+V + G ++ F+A I I+E
Sbjct: 417 VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRIYGKIKE 476
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
+ K E ++ + VP+ + S A V V D P+
Sbjct: 477 ENFVSPK------EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPD 530
Query: 568 STEREV 573
++ V
Sbjct: 531 ENDQVV 536
Score = 79 (32.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKN 511
G +IGK G+TV +L+ S +++ + TP+ V+ + F A + + I+E
Sbjct: 500 GRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 559
Query: 512 QNKH 515
+H
Sbjct: 560 VKQH 563
Score = 75 (31.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 467
Score = 75 (31.5 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 467
Score = 72 (30.4 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP + +GA+IGK G I I K + + I + +++IT+ TP+ + A
Sbjct: 200 LLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKSITILSTPEGTSAA 256
Score = 72 (30.4 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ +T++ + + A I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 64 (27.6 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
N +G +IGK G + +I + + I I +RTIT+ G + A A+
Sbjct: 285 NNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAE 340
Score = 62 (26.9 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 770
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 550
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 325
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 550
Score = 51 (23.0 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 51 (23.0 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
+ LRL+VP + + + + V + E+ + I P+ +
Sbjct: 196 LPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA 255
Query: 140 AIYQICLIM 148
A I IM
Sbjct: 256 ACKSILEIM 264
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 102 (41.0 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKI 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 RESYEN 353
Score = 102 (41.0 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKI 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 RESYEN 353
Score = 94 (38.1 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P+ R+V + G ++ F+A I I+E
Sbjct: 417 VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRIYGKIKE 476
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
+ K E ++ + VP+ + S A V V D P+
Sbjct: 477 ENFVSPK------EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPD 530
Query: 568 STEREV 573
++ V
Sbjct: 531 ENDQVV 536
Score = 79 (32.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKN 511
G +IGK G+TV +L+ S +++ + TP+ V+ + F A + + I+E
Sbjct: 500 GRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 559
Query: 512 QNKH 515
+H
Sbjct: 560 VKQH 563
Score = 75 (31.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 467
Score = 75 (31.5 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 467
Score = 72 (30.4 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP + +GA+IGK G I I K + + I + +++IT+ TP+ + A
Sbjct: 200 LLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKSITILSTPEGTSAA 256
Score = 72 (30.4 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ +T++ + + A I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 64 (27.6 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
N +G +IGK G + +I + + I I +RTIT+ G + A A+
Sbjct: 285 NNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAE 340
Score = 62 (26.9 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 770
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 550
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 325
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 550
Score = 51 (23.0 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 51 (23.0 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
+ LRL+VP + + + + V + E+ + I P+ +
Sbjct: 196 LPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA 255
Query: 140 AIYQICLIM 148
A I IM
Sbjct: 256 ACKSILEIM 264
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 102 (41.0 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKI 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 RESYEN 353
Score = 102 (41.0 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ +A I K I
Sbjct: 288 VGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKI 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 RESYEN 353
Score = 97 (39.2 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 34/149 (22%), Positives = 61/149 (40%)
Query: 428 PNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RI 484
P Y + + + VG+IIGK G+ +K+L +G+ I I+ + P+ R+
Sbjct: 395 PPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRM 454
Query: 485 VTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXX 544
V + G ++ F+A I I+E + K E ++ + VP+
Sbjct: 455 VIITGPPEAQFKAQGRIYGKIKEENFVSPK------EEVKLEAHIRVPSFAAGRVIGKGG 508
Query: 545 XXXXXXRETSGASVYVASDMLPNSTEREV 573
+ S A V V D P+ ++ V
Sbjct: 509 KTVNELQNLSSAEVVVPRDQTPDENDQVV 537
Score = 79 (32.9 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHKN 511
G +IGK G+TV +L+ S +++ + TP+ V+ + F A + + I+E
Sbjct: 501 GRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 560
Query: 512 QNKH 515
+H
Sbjct: 561 VKQH 564
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 413 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 468
Score = 75 (31.5 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 413 IPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKV--RMVIITGPPEAQFKAQ 468
Score = 72 (30.4 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+ VP + +GA+IGK G I I K + + I + +++IT+ TP+ + A
Sbjct: 200 LLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKSITILSTPEGTSAA 256
Score = 72 (30.4 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ +T++ + + A I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 64 (27.6 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
N +G +IGK G + +I + + I I +RTIT+ G + A A+
Sbjct: 285 NNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAE 340
Score = 62 (26.9 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 770
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 495 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 551
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 325
VP+ G VIGKGG + E++ +S A + + ND+ + +TG A +AQ
Sbjct: 495 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDE--NDQVVVKITGHFYACQVAQ 551
Score = 51 (23.0 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 403 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 462
Query: 581 AVTQA 585
A +A
Sbjct: 463 AQFKA 467
Score = 51 (23.0 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
+S+ + L +PA +GAS+ +A P++ R V I G P+
Sbjct: 403 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPE 462
Query: 136 AVTQA 140
A +A
Sbjct: 463 AQFKA 467
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
+ LRL+VP + + + + V + E+ + I P+ +
Sbjct: 196 LPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA 255
Query: 140 AIYQICLIM 148
A I IM
Sbjct: 256 ACKSILEIM 264
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 105 (42.0 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS+++ +A + K I
Sbjct: 297 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKAEEEVMKKI 356
Query: 61 EEFHKN 66
E ++N
Sbjct: 357 RESYEN 362
Score = 105 (42.0 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS+++ +A + K I
Sbjct: 297 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKAEEEVMKKI 356
Query: 506 EEFHKN 511
E ++N
Sbjct: 357 RESYEN 362
Score = 93 (37.8 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 30/126 (23%), Positives = 57/126 (45%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P+ R+V + G ++ F+A I ++E
Sbjct: 429 VGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRIYGKLKE 488
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
++ G E ++ + VP+ + + A V V D P+
Sbjct: 489 ------ENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPD 542
Query: 568 STEREV 573
++ V
Sbjct: 543 ENDQVV 548
Score = 76 (31.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 507
G +IGK G+TV +L+ + +++ + TP+ V+ + F A L + I+E
Sbjct: 512 GRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQLAQRKIQE 567
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 424 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL--RMVIITGPPEAQFKAQ 479
Score = 75 (31.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 424 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL--RMVIITGPPEAQFKAQ 479
Score = 74 (31.1 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M VP + +GA+IGK G I I K + + I I ++ IT+ TP+ + A
Sbjct: 209 MLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAA--EKPITIHSTPEGCSAAC 266
Query: 326 YLI 328
+I
Sbjct: 267 KII 269
Score = 68 (29.0 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI I ++ E+ +T+ + + A +I + +++
Sbjct: 216 VGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTPEGCSAACKIIMEIMQK 275
Score = 62 (26.9 bits), Expect = 5.7e-08, Sum P(4) = 5.7e-08
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 770
VP+ G VIGKGG + E++ ++ A + + ND+ + +TG A LAQ
Sbjct: 506 VPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDQVVVKITGHFYASQLAQ 562
Score = 62 (26.9 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 325
VP+ G VIGKGG + E++ ++ A + + ND+ + +TG A LAQ
Sbjct: 506 VPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDQVVVKITGHFYASQLAQ 562
Score = 46 (21.3 bits), Expect = 5.7e-08, Sum P(4) = 5.7e-08
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 576
G ES+ + L +PA +GAS+ +A P++ R V I
Sbjct: 412 GQQPESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIIT 469
Query: 577 GVPDAVTQA 585
G P+A +A
Sbjct: 470 GPPEAQFKA 478
Score = 46 (21.3 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 72 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 131
G ES+ + L +PA +GAS+ +A P++ R V I
Sbjct: 412 GQQPESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIIT 469
Query: 132 GVPDAVTQA 140
G P+A +A
Sbjct: 470 GPPEAQFKA 478
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 106 (42.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 33/134 (24%), Positives = 61/134 (45%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFS 499
H+ + + VG+IIGK G+ +K+L + + I I+ TP+ R+V + G ++ F+A
Sbjct: 408 HVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQG 467
Query: 500 LITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVY 559
I ++E ++ G E ++ + VPAS + + A V
Sbjct: 468 RIYGKLKE------ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVV 521
Query: 560 VASDMLPNSTEREV 573
V D P+ E+ +
Sbjct: 522 VPRDQTPDENEQVI 535
Score = 103 (41.3 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV GS+++ +A I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGSIENCCKAEQEIMKKV 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 REAYEN 353
Score = 103 (41.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV GS+++ +A I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGSIENCCKAEQEIMKKV 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 REAYEN 353
Score = 78 (32.5 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT 502
HI + G +IGK G+TV +L+ + +++ + TP+ VI + F A +
Sbjct: 490 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENEQVIVKIIGHFYASQMAQ 549
Query: 503 KNIEEFHKNQNKHLGGNGESQLIQLR 528
+ I + Q K G+S +Q R
Sbjct: 550 RKIRDILA-QVKQQHQKGQSGQLQAR 574
Score = 74 (31.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P + +GA+IGK G I ++ + + A I+I R + +TG P+A AQ
Sbjct: 411 IPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVVITGPPEAQFKAQ 466
Score = 74 (31.1 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P + +GA+IGK G I ++ + + A I+I R + +TG P+A AQ
Sbjct: 411 IPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVVITGPPEAQFKAQ 466
Score = 66 (28.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 15/64 (23%), Positives = 37/64 (57%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ +++ + + A +I + +++
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTPEGCSAACKMILEIMQK 266
Query: 63 FHKN 66
K+
Sbjct: 267 EAKD 270
Score = 66 (28.3 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 200 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKAISIHSTPEGCSAAC 257
Query: 326 YLI 328
+I
Sbjct: 258 KMI 260
Score = 57 (25.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP G VIGKGG + E++ ++ A +
Sbjct: 493 VPASAAGRVIGKGGKTVNELQNLTAAEV 520
Score = 57 (25.1 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP G VIGKGG + E++ ++ A +
Sbjct: 493 VPASAAGRVIGKGGKTVNELQNLTAAEV 520
Score = 46 (21.3 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 554 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 585
+ AS+ +A P+S R V I G P+A +A
Sbjct: 434 ASASIKIAPPETPDSKVRMVVITGPPEAQFKA 465
Score = 46 (21.3 bits), Expect = 8.0e-06, Sum P(3) = 8.0e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 109 SGASVYVASDMLPNSTEREVNIKGVPDAVTQA 140
+ AS+ +A P+S R V I G P+A +A
Sbjct: 434 ASASIKIAPPETPDSKVRMVVITGPPEAQFKA 465
Score = 45 (20.9 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 21/100 (21%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ ++I P+ +
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTPEGCSA 255
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 256 ACKMILEIMQKEAKDTKTADEVPLKILAHNNFVGRLIGKE 295
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 104 (41.7 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS++ +A I K I
Sbjct: 298 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIEPCAKAEEEIMKKI 357
Query: 61 EEFHKN 66
E ++N
Sbjct: 358 RESYEN 363
Score = 104 (41.7 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS++ +A I K I
Sbjct: 298 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIEPCAKAEEEIMKKI 357
Query: 506 EEFHKN 511
E ++N
Sbjct: 358 RESYEN 363
Score = 95 (38.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 32/129 (24%), Positives = 59/129 (45%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVTVIGSMDSLFRAFSLITKNIEE 507
VG+IIGK G+ +K+L +G+ I I+ + P+ R+V + G ++ F+A I ++E
Sbjct: 430 VGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRIYGKLKE 489
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
++ G E ++ + VP+ + + A V V D P+
Sbjct: 490 ------ENFFGPKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPD 543
Query: 568 STEREVNIK 576
+ EV +K
Sbjct: 544 END-EVVVK 551
Score = 76 (31.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 507
G +IGK G+TV +L+ + +++ + TP+ V+ + F A L + I+E
Sbjct: 513 GRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDEVVVKITGHFYASQLAQRKIQE 568
Score = 75 (31.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 425 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL--RMVIITGPPEAQFKAQ 480
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
+P +GA+IGK G I ++ + +GA I+I R + +TG P+A AQ
Sbjct: 425 IPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL--RMVIITGPPEAQFKAQ 480
Score = 74 (31.1 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M VP + +GA+IGK G I I K + + I I ++ IT+ TP+ + A
Sbjct: 210 MLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAA--EKPITIHSTPEGCSAAC 267
Query: 326 YLI 328
+I
Sbjct: 268 KII 270
Score = 68 (29.0 bits), Expect = 3.6e-07, Sum P(4) = 3.6e-07
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI I ++ E+ +T+ + + A +I + +++
Sbjct: 217 VGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTPEGCSAACKIIMEIMQK 276
Score = 61 (26.5 bits), Expect = 9.3e-08, Sum P(4) = 9.3e-08
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 770
VP+ G VIGKGG + E++ ++ A + + ND + +TG A LAQ
Sbjct: 507 VPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDEVVVKITGHFYASQLAQ 563
Score = 61 (26.5 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTIT-MTGTPDAIALAQ 325
VP+ G VIGKGG + E++ ++ A + + ND + +TG A LAQ
Sbjct: 507 VPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDE--NDEVVVKITGHFYASQLAQ 563
Score = 46 (21.3 bits), Expect = 9.3e-08, Sum P(4) = 9.3e-08
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 517 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 576
G ES+ + L +PA +GAS+ +A P++ R V I
Sbjct: 413 GQQPESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIIT 470
Query: 577 GVPDAVTQA 585
G P+A +A
Sbjct: 471 GPPEAQFKA 479
Score = 46 (21.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 72 GGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIK 131
G ES+ + L +PA +GAS+ +A P++ R V I
Sbjct: 413 GQQPESETVHL--FIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIIT 470
Query: 132 GVPDAVTQA 140
G P+A +A
Sbjct: 471 GPPEAQFKA 479
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 112 (44.5 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 41/178 (23%), Positives = 79/178 (44%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMD--SLF--- 495
R++ K++GS+IG+ G+ VK+LR ++ SKI I ++ ER++T+ D + F
Sbjct: 53 RYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDG 112
Query: 496 -RAFSLITKNIEEFHK-----NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXX 549
+ S + H + GE Q + +L+VP+ Q
Sbjct: 113 EKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQ-VTAKLLVPSDQIGCILGRGGQIVQN 171
Query: 550 XRETSGASVYVASDM-LPN---STEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 603
R +GA + + D +P +++ + I G V +A+ QI + ++P + +
Sbjct: 172 IRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNL 229
Score = 108 (43.1 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 40/172 (23%), Positives = 76/172 (44%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMD--SLF----RAFSL 55
K++GS+IG+ G+ VK+LR ++ SKI I ++ ER++T+ D + F + S
Sbjct: 59 KKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSP 118
Query: 56 ITKNIEEFHK-----NQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 110
+ H + GE Q + +L+VP+ Q R +G
Sbjct: 119 AQDALFRIHDRVVADDARSEDSPEGEKQ-VTAKLLVPSDQIGCILGRGGQIVQNIRSETG 177
Query: 111 ASVYVASDM-LPN---STEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI 158
A + + D +P +++ + I G V +A+ QI + ++P + +
Sbjct: 178 AQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNL 229
Score = 88 (36.0 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 40/156 (25%), Positives = 68/156 (43%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFR-AFSL 500
+R + + + S+IGK G + +LR+E+ + I + S T + S +F A+S
Sbjct: 286 IRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS- 344
Query: 501 ITKNIEEFHKNQNKHLGG-NGESQLIQL--RLIVPASQCXXXXXXXXXXXXXXRETSGAS 557
IE + Q K +S L+ RL+VP+S+ R + A+
Sbjct: 345 --PTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKAN 402
Query: 558 VYV-ASDMLPN--STERE-VNIKGVPDAVTQAIYQI 589
+ + + LP S + E V I G D +A+ QI
Sbjct: 403 IRILGKENLPKVASDDDEMVQISGELDVAKEALIQI 438
Score = 84 (34.6 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXX--XXXXNDRTITMTGTPDAIAL 768
+ VP+ IG ++GKGG I E+R+++ A IRI +D + ++G D
Sbjct: 374 LLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKE 433
Query: 769 AQYLINMSVELLRANLNGEGGGES 792
A LI ++ L RAN+ G S
Sbjct: 434 A--LIQITSRL-RANVFDREGAVS 454
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXX--XXXXNDRTITMTGTPDAIAL 323
+ VP+ IG ++GKGG I E+R+++ A IRI +D + ++G D
Sbjct: 374 LLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKE 433
Query: 324 AQYLINMSVELLRANLNGEGGGES 347
A LI ++ L RAN+ G S
Sbjct: 434 A--LIQITSRL-RANVFDREGAVS 454
Score = 77 (32.2 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 43/195 (22%), Positives = 82/195 (42%)
Query: 438 VQRRMRHIMQGK-EVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFR 496
+ +++R+ + K +G I E V + S D E++++ + D+LFR
Sbjct: 71 IVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDG---EKVLSP--AQDALFR 125
Query: 497 AFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGA 556
+ + + ++++ GE Q + +L+VP+ Q R +GA
Sbjct: 126 IHDRV---VADDARSEDSP---EGEKQ-VTAKLLVPSDQIGCILGRGGQIVQNIRSETGA 178
Query: 557 SVYVASDM-LP----NSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATI-------P 604
+ + D +P NS E + I G V +A+ QI + ++P + + P
Sbjct: 179 QIRIVKDRNMPLCALNSDEL-IQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYP 237
Query: 605 YRPLPQNAGGPGLIG 619
L +AGGP L+G
Sbjct: 238 AGSLMSHAGGPRLVG 252
Score = 75 (31.5 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 30/112 (26%), Positives = 48/112 (42%)
Query: 75 GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDM-LP----NSTEREVN 129
GE Q + +L+VP+ Q R +GA + + D +P NS E +
Sbjct: 143 GEKQ-VTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDEL-IQ 200
Query: 130 IKGVPDAVTQAIYQICLIMVDSPPKGATI-------PYRPLPQNAGGPGLIG 174
I G V +A+ QI + ++P + + P L +AGGP L+G
Sbjct: 201 ISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGGPRLVG 252
Score = 61 (26.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMT 315
P E I +VIGKGG I ++R+ + A I++ ND IT++
Sbjct: 291 PVENIASVIGKGGALINQLRQETRATIKVDSSRTEG---NDCLITIS 334
Score = 61 (26.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 714 PNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMT 760
P E I +VIGKGG I ++R+ + A I++ ND IT++
Sbjct: 291 PVENIASVIGKGGALINQLRQETRATIKVDSSRTEG---NDCLITIS 334
Score = 56 (24.8 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 269 PNELIGAVIGKGGTKIFEIRKISGAMIRI 297
P + IG+VIG+GG + ++R + + IRI
Sbjct: 57 PVKKIGSVIGRGGDIVKQLRNDTRSKIRI 85
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 107 (42.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/147 (22%), Positives = 64/147 (43%)
Query: 430 YANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVT 486
Y + Q ++ + + VG+IIGK G+ +K+L + + I I+ TP+ R+V
Sbjct: 396 YGSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVV 455
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 546
+ G ++ F+A I ++E ++ G E ++ + VPAS
Sbjct: 456 ITGPPEAQFKAQGRIYGKLKE------ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKT 509
Query: 547 XXXXRETSGASVYVASDMLPNSTEREV 573
+ + A V V D P+ ++ +
Sbjct: 510 VNELQNLTAAEVVVPRDQTPDENDQVI 536
Score = 103 (41.3 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 REAYEN 353
Score = 103 (41.3 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 REAYEN 353
Score = 76 (31.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT 502
HI + G +IGK G+TV +L+ + +++ + TP+ VI + F A +
Sbjct: 491 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQ 550
Query: 503 KNIEEFHKNQNKHLGGNGESQLIQLR 528
+ I + Q K G+S Q R
Sbjct: 551 RKIRDILA-QVKQQHQKGQSNQAQAR 575
Score = 75 (31.5 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVVITGPPEAQFKA 466
Query: 325 Q 325
Q
Sbjct: 467 Q 467
Score = 75 (31.5 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVVITGPPEAQFKA 466
Query: 770 Q 770
Q
Sbjct: 467 Q 467
Score = 69 (29.3 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ ++V + + A +I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 65 (27.9 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 200 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKAISVHSTPEGCSSAC 257
Query: 326 YLI 328
+I
Sbjct: 258 KMI 260
Score = 57 (25.1 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 57 (25.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 49 (22.3 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/100 (20%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ +++ P+ +
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSS 255
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 256 ACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKE 295
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 107 (42.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/147 (22%), Positives = 65/147 (44%)
Query: 430 YANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE---RIVT 486
Y++ Q ++ + + VG+IIGK G+ +K+L + + I I+ TP+ R+V
Sbjct: 396 YSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVI 455
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXX 546
+ G ++ F+A I ++E ++ G E ++ + VPAS
Sbjct: 456 ITGPPEAQFKAQGRIYGKLKE------ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKT 509
Query: 547 XXXXRETSGASVYVASDMLPNSTEREV 573
+ + A V V D P+ ++ +
Sbjct: 510 VNELQNLTAAEVVVPRDQTPDENDQVI 536
Score = 103 (41.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 61 EEFHKN 66
E ++N
Sbjct: 348 REAYEN 353
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS PER +TV G++++ RA I K +
Sbjct: 288 VGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKV 347
Query: 506 EEFHKN 511
E ++N
Sbjct: 348 REAYEN 353
Score = 76 (31.8 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 444 HI-MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLIT 502
HI + G +IGK G+TV +L+ + +++ + TP+ VI + F A +
Sbjct: 491 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQ 550
Query: 503 KNIEEFHKNQNKHLGGNGESQLIQLR 528
+ I + Q K G+S Q R
Sbjct: 551 RKIRDILA-QVKQQHQKGQSNQAQAR 575
Score = 74 (31.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 325 Q 325
Q
Sbjct: 467 Q 467
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ +P + +GA+IGK G I ++ + + A I+I R + +TG P+A A
Sbjct: 409 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFKA 466
Query: 770 Q 770
Q
Sbjct: 467 Q 467
Score = 69 (29.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ ++V + + A +I +E
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMI---LEI 263
Query: 63 FHK 65
HK
Sbjct: 264 MHK 266
Score = 65 (27.9 bits), Expect = 9.7e-07, Sum P(4) = 9.7e-07
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 200 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKAISVHSTPEGCSSAC 257
Query: 326 YLI 328
+I
Sbjct: 258 KMI 260
Score = 57 (25.1 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 713 VPNELIGAVIGKGGTKIFEIRKISGAMI 740
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 57 (25.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMI 295
VP G VIGKGG + E++ ++ A +
Sbjct: 494 VPASAAGRVIGKGGKTVNELQNLTAAEV 521
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(4) = 4.0e-07
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 521 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 580
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 581 AVTQA 585
A +A
Sbjct: 462 AQFKA 466
Score = 49 (22.3 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 76 ESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPD 135
E +++Q+ +PA + AS+ +A P+S R V I G P+
Sbjct: 404 EQEMVQV--FIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE 461
Query: 136 AVTQA 140
A +A
Sbjct: 462 AQFKA 466
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/100 (20%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ +++ P+ +
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSS 255
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 256 ACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKE 295
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 137 (53.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+T+PN LIG +IG+ G I EIR++S A I+I + R +T+TG+ +I+LA
Sbjct: 43 ELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGS---SGRQVTITGSAASISLA 99
Query: 325 QYLIN 329
QYLIN
Sbjct: 100 QYLIN 104
Score = 137 (53.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+T+PN LIG +IG+ G I EIR++S A I+I + R +T+TG+ +I+LA
Sbjct: 43 ELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGS---SGRQVTITGSAASISLA 99
Query: 770 QYLIN 774
QYLIN
Sbjct: 100 QYLIN 104
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 119 (46.9 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 40/147 (27%), Positives = 67/147 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS-------STPERIVTVIGSMDSL 494
+R ++ + IIGK+G +K++R +G+ I D+ T +RI+T+ GS ++
Sbjct: 383 VRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENK 442
Query: 495 FRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETS 554
F A LI + +EE KN N +R++VP E S
Sbjct: 443 FNALKLIVRQMEEREKNINN-----------PMRMLVPGKAASFLIGRKGSIIKYITEQS 491
Query: 555 GASVYVASDMLPNSTEREVNIKGVPDA 581
G+ + VA + + E+ V I G P+A
Sbjct: 492 GSQIQVAKNK-ESENEKLVLITGSPEA 517
Score = 107 (42.7 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLF 495
+ MR ++ GK +IG+ G +K + E+SGS+I ++ + S E++V + GS ++
Sbjct: 460 INNPMRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKI 519
Query: 496 RAFSLITKNIEEF 508
A L+ + +EE+
Sbjct: 520 LASVLVLQKLEEY 532
Score = 84 (34.6 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 34/141 (24%), Positives = 61/141 (43%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYIS---DSST--P--ERIVTVIGSMDSLFRAF 53
+ + +G +IGKSG V+++ + G+ I D S P E+I+T+ G ++ +A
Sbjct: 65 LPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKKENKKKAL 124
Query: 54 SLI---TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 110
L+ +K++ +F + K ES +I IVP E S
Sbjct: 125 ELVLGKSKSVMDFQEEDGK------ESIVI----IVPTRSIPIIIGQKGSKISSLSERSS 174
Query: 111 ASVYVASDMLPNSTEREVNIK 131
+ V D +P ++ + IK
Sbjct: 175 CEINVHKDDVPGIKDKAIFIK 195
Score = 78 (32.5 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M VP + +IG+ G+ I I + SG+ I++ N++ + +TG+P+A LA
Sbjct: 466 MLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESE---NEKLVLITGSPEAKILAS 522
Query: 771 YLINMSVE 778
L+ +E
Sbjct: 523 VLVLQKLE 530
Score = 77 (32.2 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIR 296
DG S + +PN IG VIGK G + EI K GA+I+
Sbjct: 46 DGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIK 93
Score = 63 (27.2 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 276 VIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXN--DRTITMTGTPDAIALAQYLINMSVE 333
+IGK G I EIR ++GA I DR +T++G+ + A LI +E
Sbjct: 395 IIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENKFNALKLIVRQME 454
Query: 334 LLRANLN 340
N+N
Sbjct: 455 EREKNIN 461
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 725 GGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 777
G + I EI + SG I I +++TG+P A +LA +I +
Sbjct: 698 GKSLIDEIVEKSGCNISICTDSNDSSSYTFN-VSITGSPLANSLAILMIQSKI 749
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 119 (46.9 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 40/147 (27%), Positives = 67/147 (45%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS-------STPERIVTVIGSMDSL 494
+R ++ + IIGK+G +K++R +G+ I D+ T +RI+T+ GS ++
Sbjct: 383 VRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENK 442
Query: 495 FRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETS 554
F A LI + +EE KN N +R++VP E S
Sbjct: 443 FNALKLIVRQMEEREKNINN-----------PMRMLVPGKAASFLIGRKGSIIKYITEQS 491
Query: 555 GASVYVASDMLPNSTEREVNIKGVPDA 581
G+ + VA + + E+ V I G P+A
Sbjct: 492 GSQIQVAKNK-ESENEKLVLITGSPEA 517
Score = 107 (42.7 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 438 VQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLF 495
+ MR ++ GK +IG+ G +K + E+SGS+I ++ + S E++V + GS ++
Sbjct: 460 INNPMRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKI 519
Query: 496 RAFSLITKNIEEF 508
A L+ + +EE+
Sbjct: 520 LASVLVLQKLEEY 532
Score = 84 (34.6 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 34/141 (24%), Positives = 61/141 (43%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYIS---DSST--P--ERIVTVIGSMDSLFRAF 53
+ + +G +IGKSG V+++ + G+ I D S P E+I+T+ G ++ +A
Sbjct: 65 LPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKKENKKKAL 124
Query: 54 SLI---TKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSG 110
L+ +K++ +F + K ES +I IVP E S
Sbjct: 125 ELVLGKSKSVMDFQEEDGK------ESIVI----IVPTRSIPIIIGQKGSKISSLSERSS 174
Query: 111 ASVYVASDMLPNSTEREVNIK 131
+ V D +P ++ + IK
Sbjct: 175 CEINVHKDDVPGIKDKAIFIK 195
Score = 78 (32.5 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M VP + +IG+ G+ I I + SG+ I++ N++ + +TG+P+A LA
Sbjct: 466 MLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESE---NEKLVLITGSPEAKILAS 522
Query: 771 YLINMSVE 778
L+ +E
Sbjct: 523 VLVLQKLE 530
Score = 77 (32.2 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 249 DGPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIR 296
DG S + +PN IG VIGK G + EI K GA+I+
Sbjct: 46 DGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIK 93
Score = 63 (27.2 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 276 VIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXN--DRTITMTGTPDAIALAQYLINMSVE 333
+IGK G I EIR ++GA I DR +T++G+ + A LI +E
Sbjct: 395 IIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENKFNALKLIVRQME 454
Query: 334 LLRANLN 340
N+N
Sbjct: 455 EREKNIN 461
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 725 GGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLINMSV 777
G + I EI + SG I I +++TG+P A +LA +I +
Sbjct: 698 GKSLIDEIVEKSGCNISICTDSNDSSSYTFN-VSITGSPLANSLAILMIQSKI 749
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 99 (39.9 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 46/195 (23%), Positives = 82/195 (42%)
Query: 424 VPQGPNYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPE- 482
VP GP Y + + Q + + + VG++IGK G+ +K+L +G+ I I+ + P+
Sbjct: 394 VP-GPPYGPMGASE-QETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDS 451
Query: 483 --RIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXX 540
R+V V G ++ F+A I ++E ++ G E ++ + V A+
Sbjct: 452 KMRMVIVTGPPEAQFKAQGRIYGKLKE------ENFFGPKEEVKLETHIKVAAAAAGRVI 505
Query: 541 XXXXXXXXXXRETSGASVYVASDMLPNSTERE-VNIKG--VPDAVTQAIYQICLIMVDSP 597
+ + A V V + P+ ++ V I G + Q + L V
Sbjct: 506 GKGGKTVNELQNLTAAEVVVPREQTPDEHDQVIVKIIGHFYASQLAQRKIRDILTQVKQQ 565
Query: 598 PKGATI--PYRPLPQ 610
KG + P P PQ
Sbjct: 566 QKGGGMGTPQGPHPQ 580
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 505
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS+++ A I K +
Sbjct: 291 VGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYNPERTITVKGSIEACCLAEQEIMKKV 350
Query: 506 EEFHKN 511
E + N
Sbjct: 351 REAYDN 356
Score = 98 (39.6 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYIS---DSS--TPERIVTVIGSMDSLFRAFSLITKNI 60
VG +IGK G +KK+ +++ +KI IS D + PER +TV GS+++ A I K +
Sbjct: 291 VGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYNPERTITVKGSIEACCLAEQEIMKKV 350
Query: 61 EEFHKN 66
E + N
Sbjct: 351 REAYDN 356
Score = 80 (33.2 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 695 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 754
GP + +P + +GA+IGK G I ++ + +GA I+I
Sbjct: 396 GPPYGPMGASEQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKM-- 453
Query: 755 RTITMTGTPDAIALAQ 770
R + +TG P+A AQ
Sbjct: 454 RMVIVTGPPEAQFKAQ 469
Score = 80 (33.2 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 250 GPSXXXXXXXXXXXXEMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXND 309
GP + +P + +GA+IGK G I ++ + +GA I+I
Sbjct: 396 GPPYGPMGASEQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKM-- 453
Query: 310 RTITMTGTPDAIALAQ 325
R + +TG P+A AQ
Sbjct: 454 RMVIVTGPPEAQFKAQ 469
Score = 70 (29.7 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 270 NELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLIN 329
N +G +IGK G + ++ + + I I +RTIT+ G+ +A LA+ I
Sbjct: 288 NNFVGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYNPERTITVKGSIEACCLAEQEIM 347
Query: 330 MSV 332
V
Sbjct: 348 KKV 350
Score = 65 (27.9 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+ VP + +GA+IGK G I I K + + I + ++ I++ TP+ + A
Sbjct: 203 LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA--EKPISIHSTPEGCSAAC 260
Query: 326 YLI 328
+I
Sbjct: 261 RMI 263
Score = 62 (26.9 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYI---SDSSTPERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+IIGK G T++ + +++ SKI + ++ E+ +++ + + A +I + + +
Sbjct: 210 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKPISIHSTPEGCSAACRMILEIMNQ 269
Query: 63 FHKN 66
K+
Sbjct: 270 EAKD 273
Score = 50 (22.7 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 719 GAVIGKGGTKIFEIRKISGAMI 740
G VIGKGG + E++ ++ A +
Sbjct: 502 GRVIGKGGKTVNELQNLTAAEV 523
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 21/100 (21%), Positives = 35/100 (35%)
Query: 80 IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQ 139
I LRL+VP + + + + V + E+ ++I P+ +
Sbjct: 199 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKPISIHSTPEGCSA 258
Query: 140 AIYQICLIMVDSPPKGAT---IPYRPLPQNAGGPGLIGNQ 176
A I IM T +P + L N LIG +
Sbjct: 259 ACRMILEIMNQEAKDTKTADEVPLKVLAHNNFVGRLIGKE 298
>WB|WBGene00019692 [details] [associations]
symbol:M01A10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0006898 GO:GO:0003723 eggNOG:NOG300923
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:FO081508 RefSeq:NP_491627.2 ProteinModelPortal:P91393
SMR:P91393 STRING:P91393 PaxDb:P91393 EnsemblMetazoa:M01A10.1
GeneID:187350 KEGG:cel:CELE_M01A10.1 UCSC:M01A10.1 CTD:187350
WormBase:M01A10.1 HOGENOM:HOG000018892 InParanoid:P91393
OMA:KARIMET NextBio:934978 Uniprot:P91393
Length = 586
Score = 122 (48.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 38/151 (25%), Positives = 69/151 (45%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 507
VG+I+G G +KK+ E+ +KI P ER + VIG+ + ++ L+ K +E
Sbjct: 248 VGAIMGLQGSNIKKISNETETKIQFMPDDDPKLMERTLVVIGNKNKVYVCARLLQKIVEA 307
Query: 508 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 567
+N N + + +++PAS+C + SGA ++ D +
Sbjct: 308 NSENAN--------TPISLFYMLIPASKCGLVIGRGGETIRQINKESGAYCEMSRDPSIS 359
Query: 568 STEREVNIKGVPDAVTQAIYQICLIMVDSPP 598
+ E++ I+G V A + I + + D PP
Sbjct: 360 AIEKQFVIRGSETQVEHAKHLIRVKVGDIPP 390
Score = 122 (48.0 bits), Expect = 0.00048, P = 0.00048
Identities = 38/151 (25%), Positives = 69/151 (45%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSLFRAFSLITKNIEE 62
VG+I+G G +KK+ E+ +KI P ER + VIG+ + ++ L+ K +E
Sbjct: 248 VGAIMGLQGSNIKKISNETETKIQFMPDDDPKLMERTLVVIGNKNKVYVCARLLQKIVEA 307
Query: 63 FHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPN 122
+N N + + +++PAS+C + SGA ++ D +
Sbjct: 308 NSENAN--------TPISLFYMLIPASKCGLVIGRGGETIRQINKESGAYCEMSRDPSIS 359
Query: 123 STEREVNIKGVPDAVTQAIYQICLIMVDSPP 153
+ E++ I+G V A + I + + D PP
Sbjct: 360 AIEKQFVIRGSETQVEHAKHLIRVKVGDIPP 390
Score = 77 (32.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
+++P E +G VIG+ G +I I + SG ++I R++ + G + I +A+
Sbjct: 56 VSIPEESVGLVIGRNGVEIQAISQKSGCRVQIVAEPSTTGY---RSVDIYGISENIEVAK 112
Query: 326 YLIN 329
LIN
Sbjct: 113 KLIN 116
Score = 76 (31.8 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 452 GSIIGKSGETVKKLREESGSK-IYISDSSTPERI--VTVIGSMDSLFRAFSLITKNIEEF 508
G+IIGK GE ++KLR + I I +++ + + + + G + A +L+ ++ F
Sbjct: 161 GAIIGKKGEQMRKLRSWTNCDFILIQENNIADSVKPLQITGQPKEVEHAKALVADILDGF 220
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPAS 534
+ + GN + L++ VP S
Sbjct: 221 DECPPAGMAGNSPVAAMSLQVKVPRS 246
Score = 71 (30.1 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M +P G VIG+GG I +I K SGA + ++ + G+ + A+
Sbjct: 321 MLIPASKCGLVIGRGGETIRQINKESGAYCEMSRDPSISAI--EKQFVIRGSETQVEHAK 378
Query: 771 YLINMSV 777
+LI + V
Sbjct: 379 HLIRVKV 385
Score = 59 (25.8 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAM-IRIXXXXXXXXXXNDRTITMTGTPDAIAL 768
++ VP +GA++G G+ I +KIS +I +RT+ + G + + +
Sbjct: 240 QVKVPRSTVGAIMGLQGSNI---KKISNETETKIQFMPDDDPKLMERTLVVIGNKNKVYV 296
Query: 769 AQYLINMSVELLRANLN 785
L+ VE N N
Sbjct: 297 CARLLQKIVEANSENAN 313
Score = 45 (20.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 268 VPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYL 327
+P GA+IGK G ++ ++R + + + + +TG P + A+ L
Sbjct: 155 IPANKCGAIIGKKGEQMRKLRSWTNCDFILIQENNIADSV--KPLQITGQPKEVEHAKAL 212
Query: 328 I 328
+
Sbjct: 213 V 213
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 101 (40.6 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 25 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 84
Query: 62 EFHKNQNK 69
E +N K
Sbjct: 85 EMPQNVAK 92
Score = 101 (40.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 25 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 84
Query: 507 EFHKNQNK 514
E +N K
Sbjct: 85 EMPQNVAK 92
Score = 85 (35.0 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 16 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 72
Score = 74 (31.1 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 435 TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYIS 476
TT +++ I+ G IIGK G TVK + E+SG+ + +S
Sbjct: 130 TTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLS 171
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
++ VPN G +IGKGG + + + SGA +++
Sbjct: 138 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 170
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 742
++ VPN G +IGKGG + + + SGA +++
Sbjct: 138 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 170
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 61
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 45 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 104
Query: 62 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 113
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 105 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWV 164
Query: 114 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 169
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 165 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 219
Query: 170 PGLIGNQFG 178
P N G
Sbjct: 220 PVANSNPTG 228
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 52/189 (27%), Positives = 84/189 (44%)
Query: 452 GSIIGKSGETVKKLREESGSKIYISDSS-----TPERIVTVIGSMDSLFRAFSLITKNIE 506
GSIIGK G+T+ +L++E+G+ I +S S T ER+ + G++++L I + I
Sbjct: 45 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIR 104
Query: 507 EFHKNQNKHLGGN--------GESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGASV 558
E +N K + ++ Q+++IVP S E SGA V
Sbjct: 105 EMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWV 164
Query: 559 YVAS--DMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGA--TIPYRPLPQNAGG 614
++ D + N ER V + G P+ +A+ I + + P G+ I Y N G
Sbjct: 165 QLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA----NVTG 219
Query: 615 PGLIGNQFG 623
P N G
Sbjct: 220 PVANSNPTG 228
Score = 103 (41.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G +
Sbjct: 131 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNR 190
Query: 496 RAFSLITKNIEE 507
+A LI + I+E
Sbjct: 191 KAVELIIQKIQE 202
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAI 321
++ +P+ G++IGKGG I +++K +GA I++ +R + GT +A+
Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 92
Score = 85 (35.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
++ VPN G +IGKGG + I + SGA +++ +R +T++G P+ A
Sbjct: 134 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEPEQNRKA 192
Query: 770 QYLINMSVE 778
LI ++
Sbjct: 193 VELIIQKIQ 201
>WB|WBGene00010908 [details] [associations]
symbol:M88.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:Z34802 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 PIR:T23837 RefSeq:NP_001022695.1
ProteinModelPortal:Q21605 SMR:Q21605 IntAct:Q21605 STRING:Q21605
PaxDb:Q21605 PRIDE:Q21605 EnsemblMetazoa:M88.5a GeneID:175595
KEGG:cel:CELE_M88.5 UCSC:M88.5a CTD:175595 WormBase:M88.5a
HOGENOM:HOG000021364 InParanoid:Q21605 OMA:FPIHSAS NextBio:888828
ArrayExpress:Q21605 Uniprot:Q21605
Length = 828
Score = 93 (37.8 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 15/33 (45%), Positives = 27/33 (81%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 742
E++VP +IG +IGKGG + E+++I+GA+++I
Sbjct: 685 EVSVPTRIIGRIIGKGGQNVRELQRITGAVVKI 717
Score = 65 (27.9 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 424 VPQGPNYANIQ--TTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI 475
+P P IQ TT + R++R + +G++IG G+ +K + ++G+ + I
Sbjct: 524 IPTPPGVLQIQPGTTNL-RQVRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKI 576
Score = 62 (26.9 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
M VP+ +IGA+IG G I I + +GA ++I
Sbjct: 545 MWVPDSMIGALIGAKGKNIKMIIRDTGASVKI 576
Score = 61 (26.5 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 1 MQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTPERIVTVIGSMDSL 49
++GK IIG +G T+K + + ++ + S ER TV+G+ D +
Sbjct: 317 VEGKYHAVIIGPNGSTIKDIASSTRCRVDFVNLSKKER--TVLGNNDRI 363
Score = 59 (25.8 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
M N+L G +IGK G+ I EI + +G I +
Sbjct: 403 MRAHNQLCGRLIGKAGSSIKEIMQKTGTNITV 434
Score = 58 (25.5 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDSSTP 36
G +IGK+G ++K++ +++G+ I ++ P
Sbjct: 411 GRLIGKAGSSIKEIMQKTGTNITVTKYIEP 440
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 151 SPPKGATIPYRPLPQNAGGPG 171
S G+T PY +PQ G G
Sbjct: 11 STGNGSTDPYAVIPQQFGNGG 31
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 458 SGETVKKLREESG---SKIYISDSSTP--ERIVTVIGSMDSLFRAFSLITKNIEEFHKNQ 512
SG+ ++ E++ S I + P ER+VT+ G L +A S + I E +
Sbjct: 608 SGDHPQEFLEDNATINSSDAIEEKPKPVSERMVTINGDDLQLLKAQSYVFSKIAETSSSL 667
Query: 513 NKHLGGNGE-SQLIQLR 528
G +G+ S ++++R
Sbjct: 668 PSS-GMDGDRSHMLRIR 683
>FB|FBgn0014870 [details] [associations]
symbol:Psi "P-element somatic inhibitor" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685
"U1 snRNP" evidence=IPI] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IDA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003729
GO:GO:0006397 GO:GO:0007283 GO:GO:0048025 GO:GO:0000381
EMBL:AL031863 InterPro:IPR015096 Pfam:PF09005 HSSP:Q96AE4
FlyBase:FBgn0014870 PIR:T13690 ProteinModelPortal:O96828 SMR:O96828
STRING:O96828 PRIDE:O96828 InParanoid:O96828 ArrayExpress:O96828
Bgee:O96828 Uniprot:O96828
Length = 806
Score = 96 (38.9 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 3 GKEVGSIIGKSGETVKKLREESGSK-IYISDSSTPERI--VTVIGSMDSLFRAFSLITKN 59
G +VG +IGK G+T+K+L+E++G+K I I D E I + + G + A ++
Sbjct: 233 GAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISGEAQKIEHAKQMVLDL 292
Query: 60 IEEFHKNQNKHLGGNG 75
I + Q + GG G
Sbjct: 293 IAQ-KDAQGQQQGGRG 307
Score = 77 (32.2 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 454 IIGKSGETVKKLREESGSKIYIS-DSSTP--ERIVTVIGSMDSLFRAFSLITKNIE-EFH 509
+IG+ GET+K + ++SG+ + ++S P E++ G+ D + A +I++ I E +
Sbjct: 450 VIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQVEAARQMISEKINMELN 509
Query: 510 KNQNKHLGG 518
K +GG
Sbjct: 510 VISRKPIGG 518
Score = 73 (30.8 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 37/189 (19%), Positives = 71/189 (37%)
Query: 7 GSIIGKSG-ETVKKLREESGSKIYISDSSTPERIVTVIGSMDSLFRAFSLITKNIEEFHK 65
G+ +G+S +T+ ++ ESG K+ + +R++ + G D+ +TK E
Sbjct: 147 GAFMGRSSNDTITHIQAESGVKVQVMQDQ--DRVIMLRGQRDT-------VTKGREMIQN 197
Query: 66 NQNKHLGGNGESQL-IQL------------RLIVPASQCXXXXXXXXXXXXXXRETSGAS 112
N+ GG E L I + +++P ++ +E +GA
Sbjct: 198 MANRAGGGQVEVLLTINMPPPGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAK 257
Query: 113 VYVASDMLPNSTEREVNIKGVPDAVTQAIYQICLIMVDSPPKGATIPYRPLPQNAGGPGL 172
+ + D + + I G + A + ++ +G R GGPG+
Sbjct: 258 MIIIQDGPNQELIKPLRISGEAQKIEHAKQMVLDLIAQKDAQGQQQGGRGGGGGGGGPGM 317
Query: 173 IGNQFGMQN 181
N F N
Sbjct: 318 GFNNFNNGN 326
Score = 64 (27.6 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VP +G VIGKGG I +I+ G ++ DR + GT + A
Sbjct: 332 EVFVPKIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEM--GDRRCVIQGTRQQVDDA 389
Query: 325 QYLINMSVE 333
+ I+ +E
Sbjct: 390 KRTIDGLIE 398
Score = 64 (27.6 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 721 VIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQYLI----NMS 776
VIG+GG I I + SGA + N++ GT D + A+ +I NM
Sbjct: 450 VIGRGGETIKLINQQSGAHTEMDRNASNPP--NEKLFKSKGTTDQVEAARQMISEKINME 507
Query: 777 VELL-RANLNG-EGGGESN 793
+ ++ R + G GGG N
Sbjct: 508 LNVISRKPIGGGPGGGGGN 526
Score = 62 (26.9 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSSTPE 482
VG +IGK G+ ++K++ E G K+ E
Sbjct: 340 VGVVIGKGGDMIRKIQTECGCKLQFIQGKNDE 371
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 119 (46.9 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 47/157 (29%), Positives = 76/157 (48%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSL 500
R ++ ++VGSIIG+ G+ +KK+ EE+ ++I I D T ER V V G + S
Sbjct: 190 RMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPE----SS 245
Query: 501 ITKNIEEFHKNQNKHLGG-NGE-SQL-----IQLRLIVPASQCXXXXXXXXXXXXXXRET 553
+ +++ + + + G +GE SQ + RL+VPASQ +E
Sbjct: 246 LPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEA 305
Query: 554 SGASVYV-ASDMLPN---STEREVNIKGVPDAVTQAI 586
S V V S+ LP +R V + G P +V +A+
Sbjct: 306 SACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRAL 342
Score = 114 (45.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIE 61
++VGSIIG+ G+ +KK+ EE+ ++I I D T ER V V G + S + +++
Sbjct: 196 QKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPE----SSLPPSMD 251
Query: 62 EFHKNQNKHLGG-NGE-SQL-----IQLRLIVPASQCXXXXXXXXXXXXXXRETSGASVY 114
+ + + G +GE SQ + RL+VPASQ +E S V
Sbjct: 252 GLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVR 311
Query: 115 V-ASDMLPN---STEREVNIKGVPDAVTQAI 141
V S+ LP +R V + G P +V +A+
Sbjct: 312 VLGSEDLPVFALQDDRVVEVVGEPTSVHRAL 342
Score = 94 (38.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSST-P------ERIVTVIGSMDSLF 495
R ++ + GS+IGK G TVK ++E S + + S P +R+V V+G S+
Sbjct: 280 RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVH 339
Query: 496 RAFSLITKNIEEF 508
RA LI ++ +F
Sbjct: 340 RALELIASHLRKF 352
Score = 70 (29.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+M +P AVIG G+ I R++SGA + I + T+ ++GT + A
Sbjct: 461 QMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVP---GEMTVEVSGTGSQVQTA 517
Query: 770 QYLI-NMSVE 778
LI N E
Sbjct: 518 VQLIQNFMAE 527
Score = 70 (29.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
+M +P AVIG G+ I R++SGA + I + T+ ++GT + A
Sbjct: 461 QMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVP---GEMTVEVSGTGSQVQTA 517
Query: 325 QYLI-NMSVE 333
LI N E
Sbjct: 518 VQLIQNFMAE 527
Score = 53 (23.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 453 SIIGKSGETVKKLREESGSKIYISDS-STP-ERIVTVIGSMDSLFRAFSLITKNIEE 507
++IG SG + R SG+ + I ++ P E V V G+ + A LI + E
Sbjct: 471 AVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAE 527
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRI 297
M VP + +G++IG+ G I +I + + A I+I
Sbjct: 191 MLVPAQKVGSIIGRKGDVIKKIVEETRARIKI 222
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 82 (33.9 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 527 LRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAI 586
+RLIV S G + + D LP S ER + I+G P ++T +
Sbjct: 159 VRLIVANSHISSIIGKAGATIKSLINKHGVKIVASKDFLPASDERIIEIQGFPGSITNVL 218
Query: 587 YQIC-LIMVDSPPKGATI-PYRP-LPQNAGGP 615
+I +I+ D + +T Y P L +++G P
Sbjct: 219 IEISEIILSDVDVRFSTERSYFPHLKKSSGEP 250
Score = 82 (33.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 82 LRLIVPASQCXXXXXXXXXXXXXXRETSGASVYVASDMLPNSTEREVNIKGVPDAVTQAI 141
+RLIV S G + + D LP S ER + I+G P ++T +
Sbjct: 159 VRLIVANSHISSIIGKAGATIKSLINKHGVKIVASKDFLPASDERIIEIQGFPGSITNVL 218
Query: 142 YQIC-LIMVDSPPKGATI-PYRP-LPQNAGGP 170
+I +I+ D + +T Y P L +++G P
Sbjct: 219 IEISEIILSDVDVRFSTERSYFPHLKKSSGEP 250
Score = 81 (33.6 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDSSTP---ERIVTVIGSMDSL 494
+R I+ + SIIGK+G T+K L + G KI S P ERI+ + G S+
Sbjct: 159 VRLIVANSHISSIIGKAGATIKSLINKHGVKIVASKDFLPASDERIIEIQGFPGSI 214
Score = 75 (31.5 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 24/97 (24%), Positives = 45/97 (46%)
Query: 431 ANIQTTGVQRRMRH--IMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVT 486
A + T Q + H ++ KE IIG G T+ ++R + KI IS+ +RI++
Sbjct: 33 APVVGTTAQPTINHRLLLSLKEAAKIIGTKGSTISRIRAANAVKIGISEKVPGCSDRILS 92
Query: 487 VIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQ 523
G++ ++ A I + + +N GE++
Sbjct: 93 CAGNVINVANAIGDIVDVLNK--RNPENEDAAEGEAE 127
Score = 71 (30.1 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 4 KEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIGSMDSLFRAFSLITKNIE 61
KE IIG G T+ ++R + KI IS+ +RI++ G++ ++ A I +
Sbjct: 53 KEAAKIIGTKGSTISRIRAANAVKIGISEKVPGCSDRILSCAGNVINVANAIGDIVDVLN 112
Query: 62 EFHKNQNKHLGGNGESQ 78
+ +N GE++
Sbjct: 113 K--RNPENEDAAEGEAE 127
Score = 65 (27.9 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGT-PDAIAL 768
E+ +P +GA+IG+G +I ++ + I + N R +T P + L
Sbjct: 262 ELKIPELYVGAIIGRGMNRIKNLKTFTKTNIVVERKDDDDKDENFRKFIITSKFPKNVKL 321
Query: 769 AQYLI--NMSVEL 779
A+ ++ N++ E+
Sbjct: 322 AESMLLKNLNTEI 334
Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGT-PDAIAL 323
E+ +P +GA+IG+G +I ++ + I + N R +T P + L
Sbjct: 262 ELKIPELYVGAIIGRGMNRIKNLKTFTKTNIVVERKDDDDKDENFRKFIITSKFPKNVKL 321
Query: 324 AQYLI--NMSVEL 334
A+ ++ N++ E+
Sbjct: 322 AESMLLKNLNTEI 334
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 118 (46.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 44/163 (26%), Positives = 77/163 (47%)
Query: 443 RHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIG----------S 490
R I+ +VG+IIG+ G+ +KK+ EE+ ++I + D +TP+RIV + G +
Sbjct: 77 RMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPA 136
Query: 491 MDSLFRAFSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXX 550
MD++ R F + + N + + G S +RL+V ++Q
Sbjct: 137 MDAVLRVF----RRVSGLPDNDDDDVQNAG-SVFSSVRLLVASTQAINLIGKQGSLIKSI 191
Query: 551 RETSGASVYVASD----MLPNSTEREVNIKGVPDAVTQAIYQI 589
E SGASV + S+ ER V+++G + +A+ I
Sbjct: 192 VENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAI 234
Score = 115 (45.5 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISDS--STPERIVTVIG----------SMDSLFRA 52
+VG+IIG+ G+ +KK+ EE+ ++I + D +TP+RIV + G +MD++ R
Sbjct: 84 KVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRV 143
Query: 53 FSLITKNIEEFHKNQNKHLGGNGESQLIQLRLIVPASQCXXXXXXXXXXXXXXRETSGAS 112
F + + N + + G S +RL+V ++Q E SGAS
Sbjct: 144 F----RRVSGLPDNDDDDVQNAG-SVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGAS 198
Query: 113 VYVASD----MLPNSTEREVNIKGVPDAVTQAIYQI 144
V + S+ ER V+++G + +A+ I
Sbjct: 199 VRILSEEETPFYAAQDERIVDLQGEALKILKALEAI 234
Score = 68 (29.0 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 454 IIGKSGETVKKLREESGSKIYISDSSTPERI-VTVIGSMDSLFRAFSLITKNIEEFHKNQ 512
IIG G + +R SG+ I I +S P++I V + G+ + A LI + I HK
Sbjct: 355 IIGVEGANIAYIRRRSGATITIKESPHPDQITVEIKGTTSQVQTAEQLIQEFIIN-HKEP 413
Query: 513 NKHLGG 518
GG
Sbjct: 414 VSVSGG 419
Score = 54 (24.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 711 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 770
M +P +IG G I IR+ SGA I I + T+ + GT + A+
Sbjct: 345 MQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPHP----DQITVEIKGTTSQVQTAE 400
Query: 771 YLI 773
LI
Sbjct: 401 QLI 403
Score = 54 (24.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 266 MTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALAQ 325
M +P +IG G I IR+ SGA I I + T+ + GT + A+
Sbjct: 345 MQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPHP----DQITVEIKGTTSQVQTAE 400
Query: 326 YLI 328
LI
Sbjct: 401 QLI 403
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 101 (40.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 434 QTTGVQRRMRHI-MQGKEVGSIIGKSGETVKKLREESGSKIYI-----SDSSTPERIVTV 487
+ G Q R I + +VG +IGK GET++ L+ SG+KI I +D S+ R V +
Sbjct: 169 EVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEI 228
Query: 488 IGSMDSLFRAFSLITKNIEE 507
IGS+ + A LI+ I E
Sbjct: 229 IGSVACIESAEKLISAVIAE 248
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYI-----SDSSTPERIVTVIGSMDSLFRAFSLITKN 59
+VG +IGK GET++ L+ SG+KI I +D S+ R V +IGS+ + A LI+
Sbjct: 186 KVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVACIESAEKLISAV 245
Query: 60 IEE 62
I E
Sbjct: 246 IAE 248
Score = 85 (35.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ VPN+ +G +IG+GG I ++ SGA ++ +RT+ ++G I +A
Sbjct: 275 EIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDIA 334
Query: 770 QYLI 773
+I
Sbjct: 335 TDMI 338
Score = 85 (35.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E+ VPN+ +G +IG+GG I ++ SGA ++ +RT+ ++G I +A
Sbjct: 275 EIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDIA 334
Query: 325 QYLI 328
+I
Sbjct: 335 TDMI 338
>UNIPROTKB|C9JSZ1 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 IPI:IPI00641948
ProteinModelPortal:C9JSZ1 SMR:C9JSZ1 STRING:C9JSZ1 PRIDE:C9JSZ1
Ensembl:ENST00000421641 HOGENOM:HOG000110867 ArrayExpress:C9JSZ1
Bgee:C9JSZ1 Uniprot:C9JSZ1
Length = 232
Score = 114 (45.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 6 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 63
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 132 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 191
Query: 64 HKNQNKHLGGNGESQLIQLRLIVPASQ 90
H G+G +Q +++PAS+
Sbjct: 192 RPAPGFH-HGDGPGNAVQ-EIMIPASK 216
Score = 114 (45.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 451 VGSIIGKSGETVKKLREESGSKIYISDSS--TPERIVTVIGSMDSLFRAFSLITKNIEEF 508
VG IIG+ GE + ++++ESG KI I+ S PER + G+ +S+ A L+ + +E+
Sbjct: 132 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 191
Query: 509 HKNQNKHLGGNGESQLIQLRLIVPASQ 535
H G+G +Q +++PAS+
Sbjct: 192 RPAPGFH-HGDGPGNAVQ-EIMIPASK 216
Score = 102 (41.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
E VP+ ++G +IG+GG +I I++ SG I+I +R+ +TGTP+++ A
Sbjct: 124 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSA 180
Query: 325 QYLINMSVE 333
+ L++ VE
Sbjct: 181 KRLLDQIVE 189
Score = 55 (24.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 437 GVQRRMRHIM-QGKEVGSIIGKSGETVKKLR 466
G ++ IM + G +IGK GET+K+L+
Sbjct: 202 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQ 232
Score = 50 (22.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIR 288
E+ +P G VIGKGG I +++
Sbjct: 209 EIMIPASKAGLVIGKGGETIKQLQ 232
Score = 50 (22.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIR 733
E+ +P G VIGKGG I +++
Sbjct: 209 EIMIPASKAGLVIGKGGETIKQLQ 232
>RGD|1311196 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1311196 GO:GO:0003723 EMBL:CH474015 eggNOG:NOG262512
HOGENOM:HOG000037932 OrthoDB:EOG4T4CV4 UniGene:Rn.98848
EMBL:BC059161 IPI:IPI00370637 SMR:Q6PCT7 UCSC:RGD:1311196
HOVERGEN:HBG062756 InParanoid:Q6PCT7 Genevestigator:Q6PCT7
Uniprot:Q6PCT7
Length = 296
Score = 90 (36.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+++VP +G +IG+GG I I K SGA I + R I ++GT +A A
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVAAA 186
Query: 770 QYLI 773
++LI
Sbjct: 187 KHLI 190
Score = 76 (31.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM VP E + +IG+ G I ++RK +GA I + ++R + ++G P + A
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG----DERVLLISGFPVQVCKA 111
Query: 325 QYLIN 329
+ I+
Sbjct: 112 KAAIH 116
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 440 RRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLF 495
++++ I+ G IIGK G TVK + E+SG+ + +S + ER+VTV G +
Sbjct: 26 KQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNR 85
Query: 496 RAFSLITKNIEE 507
+A LI + I+E
Sbjct: 86 KAVELIIQKIQE 97
Score = 96 (38.9 bits), Expect = 0.00071, P = 0.00071
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 GSIIGKSGETVKKLREESGSKIYISDS----STPERIVTVIGSMDSLFRAFSLITKNIEE 62
G IIGK G TVK + E+SG+ + +S + ER+VTV G + +A LI + I+E
Sbjct: 38 GLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 97
>UNIPROTKB|C9K0A2 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 GO:GO:0003723
EMBL:AC115284 HGNC:HGNC:8652 IPI:IPI00947004
ProteinModelPortal:C9K0A2 SMR:C9K0A2 STRING:C9K0A2
Ensembl:ENST00000461544 ArrayExpress:C9K0A2 Bgee:C9K0A2
Uniprot:C9K0A2
Length = 46
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREE 468
+R +M GKEVGSIIGK GETVK++RE+
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQ 46
Score = 95 (38.5 bits), Expect = 0.00091, P = 0.00091
Identities = 18/23 (78%), Positives = 21/23 (91%)
Query: 1 MQGKEVGSIIGKSGETVKKLREE 23
M GKEVGSIIGK GETVK++RE+
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQ 46
>UNIPROTKB|F8WC71 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 GO:GO:0003723
EMBL:AC115284 HGNC:HGNC:8652 IPI:IPI00946372
ProteinModelPortal:F8WC71 SMR:F8WC71 Ensembl:ENST00000471308
ArrayExpress:F8WC71 Bgee:F8WC71 Uniprot:F8WC71
Length = 57
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 442 MRHIMQGKEVGSIIGKSGETVKKLREE 468
+R +M GKEVGSIIGK GETVK++RE+
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQ 46
Score = 95 (38.5 bits), Expect = 0.00091, P = 0.00091
Identities = 18/23 (78%), Positives = 21/23 (91%)
Query: 1 MQGKEVGSIIGKSGETVKKLREE 23
M GKEVGSIIGK GETVK++RE+
Sbjct: 24 MHGKEVGSIIGKKGETVKRIREQ 46
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 90 (36.7 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 22/102 (21%), Positives = 51/102 (50%)
Query: 429 NYANIQTTGVQRRMRHIMQGKEVGSIIGKSGETVKKLREESGSKIYI--SDSSTP----- 481
+Y ++ G + R ++ VG ++GK G+ ++++R E+ + I I +S+ P
Sbjct: 165 DYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL 224
Query: 482 -ERIVTVIGSMDSLFRAFSLITKNIEEFHKNQNKHLGGNGES 522
E IV ++G ++++ A ++++ + E + G S
Sbjct: 225 SEEIVQIVGELNAVKNALAIVSSRLRESQHRDRSNFQGRSHS 266
Score = 66 (28.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 5 EVGSIIGKSGETVKKLREESGSKIYISD--SSTPERIVTV 42
+ G +IGKSG +K +R+ +G+ I + + ERI+ +
Sbjct: 78 KAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEI 117
Score = 60 (26.2 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 552 ETSGASVYVASDMLPNSTEREVNIKGVPDAV--TQAIYQ--ICLIMVDSP 597
E SGASV + D P T+ + I G P+ Q++ Q I I D P
Sbjct: 604 EWSGASVTIVEDR-PEETQNIIRISGTPEQAERAQSLLQGFILSIQEDGP 652
Score = 57 (25.1 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
E+ +P ++ ++ K K+ +I + SGA + I I ++GTP+ A
Sbjct: 580 EVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEET---QNIIRISGTPEQAERA 636
Query: 770 QYLI 773
Q L+
Sbjct: 637 QSLL 640
>UNIPROTKB|E2RBJ9 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 GeneTree:ENSGT00530000063224
CTD:11022 EMBL:AAEX03011058 EMBL:AAEX03011059 RefSeq:XP_851426.2
Ensembl:ENSCAFT00000020405 GeneID:609125 KEGG:cfa:609125
Uniprot:E2RBJ9
Length = 563
Score = 90 (36.7 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+++VP +G +IG+GG I I K SGA I + R I ++GT +A A
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVAAA 186
Query: 770 QYLI 773
++LI
Sbjct: 187 KHLI 190
Score = 81 (33.6 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM VP E + +IG+ GT I ++RK +GA I + ++R + ++G P + A
Sbjct: 56 EMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTEDVG----DERVLLISGFPVQVCKA 111
Query: 325 QYLIN 329
+ I+
Sbjct: 112 KAAIH 116
Score = 37 (18.1 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 896 PNYANIQTTGVQRRNSLSV 914
PN N Q +GVQ +S+
Sbjct: 276 PNGDNFQKSGVQTSPEMSM 294
>UNIPROTKB|J9P0T0 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 Pfam:PF01281 GO:GO:0003723
Pfam:PF00567 SMART:SM00333 PROSITE:PS50304 Gene3D:3.40.5.10
InterPro:IPR009027 InterPro:IPR020070 SUPFAM:SSF55658
GeneTree:ENSGT00530000063224 EMBL:AAEX03011058 EMBL:AAEX03011059
Ensembl:ENSCAFT00000048274 Uniprot:J9P0T0
Length = 605
Score = 90 (36.7 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+++VP +G +IG+GG I I K SGA I + R I ++GT +A A
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVAAA 186
Query: 770 QYLI 773
++LI
Sbjct: 187 KHLI 190
Score = 81 (33.6 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM VP E + +IG+ GT I ++RK +GA I + ++R + ++G P + A
Sbjct: 56 EMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTEDVG----DERVLLISGFPVQVCKA 111
Query: 325 QYLIN 329
+ I+
Sbjct: 112 KAAIH 116
Score = 37 (18.1 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 896 PNYANIQTTGVQRRNSLSV 914
PN N Q +GVQ +S+
Sbjct: 276 PNGDNFQKSGVQTSPEMSM 294
>MGI|MGI:1919884 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing protein"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 MGI:MGI:1919884 GO:GO:0005739
GO:GO:0003723 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00530000063224 CTD:11022 eggNOG:NOG262512
HOGENOM:HOG000037932 HOVERGEN:HBG055309 OMA:FHADEYL
OrthoDB:EOG4T4CV4 EMBL:BC049363 IPI:IPI00330464 RefSeq:NP_082583.1
UniGene:Mm.331198 UniGene:Mm.470795 PDB:1WE8 PDBsum:1WE8
ProteinModelPortal:Q80VL1 SMR:Q80VL1 STRING:Q80VL1
PhosphoSite:Q80VL1 PaxDb:Q80VL1 PRIDE:Q80VL1
Ensembl:ENSMUST00000045245 Ensembl:ENSMUST00000166032 GeneID:72634
KEGG:mmu:72634 UCSC:uc008qge.1 InParanoid:Q80VL1
EvolutionaryTrace:Q80VL1 NextBio:336631 Bgee:Q80VL1
CleanEx:MM_TDRKH Genevestigator:Q80VL1
GermOnline:ENSMUSG00000041912 Uniprot:Q80VL1
Length = 560
Score = 90 (36.7 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+++VP +G +IG+GG I I K SGA I + R I ++GT +A A
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVAAA 186
Query: 770 QYLI 773
++LI
Sbjct: 187 KHLI 190
Score = 76 (31.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM VP E + +IG+ G I ++RK +GA I + ++R + ++G P + A
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG----DERVLLISGFPVQVCKA 111
Query: 325 QYLIN 329
+ I+
Sbjct: 112 KAAIH 116
>UNIPROTKB|G3V8T7 [details] [associations]
symbol:Tdrkh "RCG51933, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 RGD:1311196 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH474015
GeneTree:ENSGT00530000063224 CTD:11022 EMBL:AC133978
RefSeq:NP_001014060.2 UniGene:Rn.98848 PRIDE:G3V8T7
Ensembl:ENSRNOT00000028299 GeneID:310652 KEGG:rno:310652
NextBio:662332 Uniprot:G3V8T7
Length = 560
Score = 90 (36.7 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+++VP +G +IG+GG I I K SGA I + R I ++GT +A A
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVAAA 186
Query: 770 QYLI 773
++LI
Sbjct: 187 KHLI 190
Score = 76 (31.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM VP E + +IG+ G I ++RK +GA I + ++R + ++G P + A
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG----DERVLLISGFPVQVCKA 111
Query: 325 QYLIN 329
+ I+
Sbjct: 112 KAAIH 116
>UNIPROTKB|Q9Y2W6 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH471121 EMBL:AL589765
EMBL:AF119121 EMBL:AF227192 EMBL:BC022467 IPI:IPI00009982
IPI:IPI01013931 RefSeq:NP_001077432.1 RefSeq:NP_001077433.1
RefSeq:NP_001077434.1 RefSeq:NP_006853.2 UniGene:Hs.144439 PDB:2DIQ
PDB:3FDR PDBsum:2DIQ PDBsum:3FDR ProteinModelPortal:Q9Y2W6
SMR:Q9Y2W6 DIP:DIP-59459N STRING:Q9Y2W6 PhosphoSite:Q9Y2W6
DMDM:39932455 PaxDb:Q9Y2W6 PRIDE:Q9Y2W6 DNASU:11022
Ensembl:ENST00000368822 Ensembl:ENST00000368824
Ensembl:ENST00000368825 Ensembl:ENST00000368827
Ensembl:ENST00000458431 GeneID:11022 KEGG:hsa:11022 UCSC:uc001eyy.2
CTD:11022 GeneCards:GC01M151745 HGNC:HGNC:11713 HPA:HPA016419
HPA:HPA019625 MIM:609501 neXtProt:NX_Q9Y2W6 PharmGKB:PA36431
eggNOG:NOG262512 HOGENOM:HOG000037932 HOVERGEN:HBG055309
InParanoid:Q9Y2W6 OMA:FHADEYL OrthoDB:EOG4T4CV4 PhylomeDB:Q9Y2W6
EvolutionaryTrace:Q9Y2W6 GenomeRNAi:11022 NextBio:41878
ArrayExpress:Q9Y2W6 Bgee:Q9Y2W6 CleanEx:HS_TDRKH
Genevestigator:Q9Y2W6 GermOnline:ENSG00000182134 Uniprot:Q9Y2W6
Length = 561
Score = 90 (36.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+++VP +G +IG+GG I I K SGA I + R I ++GT +A A
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVAAA 186
Query: 770 QYLI 773
++LI
Sbjct: 187 KHLI 190
Score = 76 (31.8 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM VP E + +IG+ G I ++RK +GA I + ++R + ++G P + A
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG----DERVLLISGFPVQVCKA 111
Query: 325 QYLIN 329
+ I+
Sbjct: 112 KAAIH 116
>UNIPROTKB|F1MUI1 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:DAAA02007247
IPI:IPI00703713 Ensembl:ENSBTAT00000028777 Uniprot:F1MUI1
Length = 566
Score = 90 (36.7 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 710 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 769
+++VP +G +IG+GG I I K SGA I + R I ++GT +A A
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVAAA 186
Query: 770 QYLI 773
++LI
Sbjct: 187 KHLI 190
Score = 76 (31.8 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 265 EMTVPNELIGAVIGKGGTKIFEIRKISGAMIRIXXXXXXXXXXNDRTITMTGTPDAIALA 324
EM VP E + +IG+ G I ++RK +GA I + ++R + ++G P + A
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKKTGARIDVDTEDIG----DERVLLISGFPVQVCKA 111
Query: 325 QYLIN 329
+ I+
Sbjct: 112 KAAIH 116
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.132 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 914 608 0.00087 120 3 11 23 0.47 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 222
No. of states in DFA: 558 (59 KB)
Total size of DFA: 231 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.92u 0.10s 44.02t Elapsed: 00:00:05
Total cpu time: 44.06u 0.11s 44.17t Elapsed: 00:00:05
Start: Thu Aug 15 15:24:34 2013 End: Thu Aug 15 15:24:39 2013
WARNINGS ISSUED: 1