BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13907
(698 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2
PE=1 SV=1
Length = 333
Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 184/331 (55%), Gaps = 28/331 (8%)
Query: 265 LQKINEFILENKLY-LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRD 323
+ +F+ + Y +IDGG +++ +H + N +PLW + L ++ + H D
Sbjct: 6 FNSMKDFLKQTGGYAVIDGGLATEFERHGADLN-----DPLWSAKCLVTSPHLIHTVHLD 60
Query: 324 YVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAI--------ALEEK 375
Y+ AG DI+++ +YQA+++GF + G S ++S L++ +V+ EA
Sbjct: 61 YLEAGADIISSASYQATIQGF-EAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSM 119
Query: 376 RDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDL 435
D + R + VA S+GSYGA+L DGSEY G Y DS T ++L D+HR R++ L + G DL
Sbjct: 120 DDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADL 179
Query: 436 LAIETLPAQEEAMVLAELIKE----YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKN 491
+A ET+P + EA A+L++E PG W SF+ KD + GD A+N
Sbjct: 180 IAFETIPNKIEAQAFADLLEEGDVKIPG---WFSFNSKDGVNVVSGDSIKECIS--IAEN 234
Query: 492 PAQLVAVGVNCLAPHYVESLLTSAGR--DVPLLCCPNSGETFDPGQRIWMNKDSVPSVD- 548
++VAVG+NC P ++E L+ + P+L PNSGE++D ++ W+ V D
Sbjct: 235 CEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDEDF 294
Query: 549 -TYVPRWLDTGVKYVGGCCRTNADDMKNVNQ 578
+YV +W+D GV +GGCCRT ++ +++
Sbjct: 295 VSYVEKWMDAGVSLLGGCCRTTPTTIRAIHK 325
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 105/190 (55%), Gaps = 18/190 (9%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAI--------VLEEKRDPAIASRHVRVAGS 52
A+++GF + G S ++S L++ +V+ EA D + R + VA S
Sbjct: 76 ATIQGF-EAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRPILVAAS 134
Query: 53 LGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVL 112
+GSYGA+L DGSEY G Y DS T ++L D+HR R++ L + G DL+A ET+P + EA
Sbjct: 135 VGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAF 194
Query: 113 AELIKE----YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPH 168
A+L++E PG W SF+ KD + GD A+N ++VAVG+NC P
Sbjct: 195 ADLLEEGDVKIPG---WFSFNSKDGVNVVSGDSIKECIS--IAENCEKVVAVGINCTPPR 249
Query: 169 YVESLLTSAE 178
++E L+ E
Sbjct: 250 FIEGLVLEIE 259
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1
Length = 339
Score = 198 bits (504), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 179/309 (57%), Gaps = 16/309 (5%)
Query: 279 LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQ 338
++DGG +++L E N + ++PLW + L S+ + H DY+ AG +I+ T +YQ
Sbjct: 25 VLDGGLATEL-----EANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQ 79
Query: 339 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA--IALEEKRDPAIASRH-VRVAGSLGSYG 395
A+++GF + G S++QS L+ +V+ EA + L+E + + +H V VA SLGSYG
Sbjct: 80 ATIQGF-ESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPIQHPVLVAASLGSYG 138
Query: 396 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 455
A+L DGSEY GDY ++ T + L D+HR R++ L + G DL+A ET+P + EA EL++
Sbjct: 139 AYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLE 198
Query: 456 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTS 514
E + AW SF+ KD H GD LI A A++ AVG+NC P ++ L+ S
Sbjct: 199 ECNINIPAWFSFNSKDGVHIVSGDS--LIECTTIADKCAKVGAVGINCTPPRFIHGLILS 256
Query: 515 AGR--DVPLLCCPNSGETFDPGQRIWMNKDSVPSVD--TYVPRWLDTGVKYVGGCCRTNA 570
+ D P+L PNSGE +D ++ W+ V D +YV W G +GGCCRT
Sbjct: 257 IRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTP 316
Query: 571 DDMKNVNQV 579
+ ++ +++
Sbjct: 317 NTIRAIHRT 325
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 7/180 (3%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA--IVLEEKRDPAIASRH-VRVAGSLGSYG 57
A+++GF + G S++QS L+ +V+ EA + L+E + + +H V VA SLGSYG
Sbjct: 80 ATIQGF-ESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTPIQHPVLVAASLGSYG 138
Query: 58 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 117
A+L DGSEY GDY ++ T + L D+HR R++ L + G DL+A ET+P + EA EL++
Sbjct: 139 AYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLE 198
Query: 118 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTS 176
E + AW SF+ KD H GD LI A A++ AVG+NC P ++ L+ S
Sbjct: 199 ECNINIPAWFSFNSKDGVHIVSGDS--LIECTTIADKCAKVGAVGINCTPPRFIHGLILS 256
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var.
italica GN=SMT PE=1 SV=1
Length = 346
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 186/333 (55%), Gaps = 22/333 (6%)
Query: 259 NILSKDLQKINEFILENKLY-LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAV 317
N ++ + E + E Y +IDGG +++L +H + N +PLW + L ++ +
Sbjct: 5 NTKAETFYSMKELLKETGGYAIIDGGLATELERHGADLN-----DPLWSAKCLLTSPHLI 59
Query: 318 IDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA------IA 371
H DY+ AG DI+++ +YQA+++GF + G S ++S L+R +V+ EA
Sbjct: 60 HTVHLDYLEAGADIISSASYQATIQGF-EAKGYSIEKSESLLRKSVEIACEARSTYYDKC 118
Query: 372 LEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQG 431
++ + R + VA S+GSYGAFL DGSEY G Y D T + L D+HR R++ L +
Sbjct: 119 KDDDDKKILKKRPILVAASVGSYGAFLADGSEYSGIYGDLITLETLKDFHRRRVQVLAES 178
Query: 432 GIDLLAIETLPAQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFG-LIARDVYA 489
G D++A ET+P + EA AEL+ E + W SF+ KD + GD IA A
Sbjct: 179 GADIIAFETIPNKLEAQAFAELLDEGVAKIPGWFSFNSKDGVNVVSGDSIKECIA---IA 235
Query: 490 KNPAQLVAVGVNCLAPHYVESLLTSAGR--DVPLLCCPNSGETFDPGQRIWMNKDSVPSV 547
+ ++VAVG+NC P ++E L+ + P+L PNSGE +DP ++ W+ V +
Sbjct: 236 EACEKVVAVGINCTPPRFIEGLVLEIAKVTSKPILVYPNSGERYDPERKEWVENTGVGNE 295
Query: 548 D--TYVPRWLDTGVKYVGGCCRTNADDMKNVNQ 578
D +YV +W+D GV +GGCCRT ++ +++
Sbjct: 296 DFVSYVEKWMDAGVSLLGGCCRTTPTTIRAIHK 328
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 12/182 (6%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA------IVLEEKRDPAIASRHVRVAGSLG 54
A+++GF + G S ++S L+R +V+ EA ++ + R + VA S+G
Sbjct: 81 ATIQGF-EAKGYSIEKSESLLRKSVEIACEARSTYYDKCKDDDDKKILKKRPILVAASVG 139
Query: 55 SYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAE 114
SYGAFL DGSEY G Y D T + L D+HR R++ L + G D++A ET+P + EA AE
Sbjct: 140 SYGAFLADGSEYSGIYGDLITLETLKDFHRRRVQVLAESGADIIAFETIPNKLEAQAFAE 199
Query: 115 LIKE-YPGLKAWISFSCKDEKHTCHGDKFG-LIARDVYAKNPAQLVAVGVNCLAPHYVES 172
L+ E + W SF+ KD + GD IA A+ ++VAVG+NC P ++E
Sbjct: 200 LLDEGVAKIPGWFSFNSKDGVNVVSGDSIKECIA---IAEACEKVVAVGINCTPPRFIEG 256
Query: 173 LL 174
L+
Sbjct: 257 LV 258
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1
Length = 338
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 180/309 (58%), Gaps = 16/309 (5%)
Query: 279 LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQ 338
++DGG +++L E N + ++PLW + L S+ + H DY+ AG +I+ T +YQ
Sbjct: 25 VLDGGLATEL-----EANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQ 79
Query: 339 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA--IALEEKRDPAIASRH-VRVAGSLGSYG 395
A+++GF + G S++QS L+ +V+ EA + L+E + + +H + VA +LGSYG
Sbjct: 80 ATIQGF-ESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPIQHPILVAAALGSYG 138
Query: 396 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 455
A+L DGSEY GDY ++ T + L D+HR R++ L + G DL+A ET+P + EA EL++
Sbjct: 139 AYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLE 198
Query: 456 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTS 514
E + +W+SF+ KD H GD LI A A++ AVG+NC P ++ L+ S
Sbjct: 199 ECNINIPSWLSFNSKDGVHVVSGDS--LIECATIADKCAKVGAVGINCTPPRFIHGLILS 256
Query: 515 AGR--DVPLLCCPNSGETFDPGQRIWMNKDSVPSVD--TYVPRWLDTGVKYVGGCCRTNA 570
+ D P+L PNSGE +D ++ W+ V D +YV W G +GGCCRT
Sbjct: 257 IRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAALIGGCCRTTP 316
Query: 571 DDMKNVNQV 579
+ ++ +++
Sbjct: 317 NTIRAIHRT 325
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 109/180 (60%), Gaps = 7/180 (3%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA--IVLEEKRDPAIASRH-VRVAGSLGSYG 57
A+++GF + G S++QS L+ +V+ EA + L+E + + +H + VA +LGSYG
Sbjct: 80 ATIQGF-ESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTPIQHPILVAAALGSYG 138
Query: 58 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 117
A+L DGSEY GDY ++ T + L D+HR R++ L + G DL+A ET+P + EA EL++
Sbjct: 139 AYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLE 198
Query: 118 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTS 176
E + +W+SF+ KD H GD LI A A++ AVG+NC P ++ L+ S
Sbjct: 199 ECNINIPSWLSFNSKDGVHVVSGDS--LIECATIADKCAKVGAVGINCTPPRFIHGLILS 256
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3
PE=1 SV=2
Length = 347
Score = 195 bits (496), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 178/316 (56%), Gaps = 23/316 (7%)
Query: 279 LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQ 338
++DGGF+++L +H + N +PLW + L ++ V H DY+ +G +I+ T +YQ
Sbjct: 25 VVDGGFATELQRHGADIN-----DPLWSAKCLITSPHLVTKVHLDYLESGANIIITASYQ 79
Query: 339 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKR------DPAIASRHVR----VA 388
A+++GFV GLS ++ L+R +V+ EA + R D A A + R VA
Sbjct: 80 ATIQGFVAK-GLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPILVA 138
Query: 389 GSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAM 448
S+GSYGA+L DGSEY G Y DS + + L D+HR R++ L + G DL+A ET+P + EA
Sbjct: 139 ASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAE 198
Query: 449 VLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHY 507
A+L++E + AW SF+ KD GD A+ A + +VA+G+NC AP Y
Sbjct: 199 AYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAK--VADSCKNVVAIGINCTAPRY 256
Query: 508 VESLLTSAGRDV--PLLCCPNSGETFDPGQRIWMNKDSVPSVD--TYVPRWLDTGVKYVG 563
+ +L+ S + P++ PNSGE +D + W+ + D +YV +W D G G
Sbjct: 257 IHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRDAGASLFG 316
Query: 564 GCCRTNADDMKNVNQV 579
GCCRT + ++ + +V
Sbjct: 317 GCCRTTPNTIRAIAKV 332
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 14/187 (7%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKR------DPAIASRHVR----VA 50
A+++GFV GLS ++ L+R +V+ EA + R D A A + R VA
Sbjct: 80 ATIQGFVAK-GLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPILVA 138
Query: 51 GSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAM 110
S+GSYGA+L DGSEY G Y DS + + L D+HR R++ L + G DL+A ET+P + EA
Sbjct: 139 ASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAE 198
Query: 111 VLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHY 169
A+L++E + AW SF+ KD GD A+ A + +VA+G+NC AP Y
Sbjct: 199 AYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAK--VADSCKNVVAIGINCTAPRY 256
Query: 170 VESLLTS 176
+ +L+ S
Sbjct: 257 IHALIIS 263
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1
Length = 342
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 169/311 (54%), Gaps = 19/311 (6%)
Query: 279 LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQ 338
++DGG ++L H G D + LW + L S + H DY+ AG D++ + +YQ
Sbjct: 26 VVDGGLGTELEAH-GAD----LHDALWSAKCLASAPHLIRKVHLDYLEAGADVIISASYQ 80
Query: 339 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA---IALEEKRDPAIASRHVRVAGSLGSYG 395
A++EGF Q G S D+S +L+R +V +EA A E R VA S+GSYG
Sbjct: 81 ATIEGF-QSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRGRPPALVAASVGSYG 139
Query: 396 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 455
A+ DGSEY GDY S T ++L ++HR R++ L G DL+A ET+P + EA V AEL++
Sbjct: 140 AYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLE 199
Query: 456 EYPGLK--AWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLT 513
E G++ AW SF+ KD + GD A A + ++ AVGVNC AP ++ L+
Sbjct: 200 EN-GIRIPAWFSFTSKDGVNAASGDPINECA--AVADSCPRVDAVGVNCTAPRFIHGLIL 256
Query: 514 SAGR--DVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPR---WLDTGVKYVGGCCRT 568
S + P++ PNSGET+ W++ D D +V R W G +GGCCRT
Sbjct: 257 SIKKVTSKPIVVYPNSGETYVAETNEWVDSDGATGTDDFVSRVGEWRRAGAALIGGCCRT 316
Query: 569 NADDMKNVNQV 579
+ ++ + +
Sbjct: 317 SPATVRAIARA 327
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA---IVLEEKRDPAIASRHVRVAGSLGSYG 57
A++EGF Q G S D+S +L+R +V +EA E R VA S+GSYG
Sbjct: 81 ATIEGF-QSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRGRPPALVAASVGSYG 139
Query: 58 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 117
A+ DGSEY GDY S T ++L ++HR R++ L G DL+A ET+P + EA V AEL++
Sbjct: 140 AYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLE 199
Query: 118 EYPGLK--AWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLT 175
E G++ AW SF+ KD + GD A A + ++ AVGVNC AP ++ L+
Sbjct: 200 EN-GIRIPAWFSFTSKDGVNAASGDPINECA--AVADSCPRVDAVGVNCTAPRFIHGLIL 256
Query: 176 S 176
S
Sbjct: 257 S 257
>sp|O31463|HMT_BACSU Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain
168) GN=ybgG PE=4 SV=1
Length = 315
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 163/306 (53%), Gaps = 19/306 (6%)
Query: 277 LYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNT 336
L ++DG +++L + N + LW + L + + H DY AG D T +
Sbjct: 13 LIVLDGAMATELERKGCNLN-----DSLWSAKILMEEPELIKQVHTDYFAAGADCAITAS 67
Query: 337 YQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA----IALEEKRDPAIASRHVRVAGSLG 392
YQ++ EGF GLSE ++ +LI +V EA +LEE R + +A S+G
Sbjct: 68 YQSTFEGFAAR-GLSEAEARRLIELSVSIAAEARDEFWSLEENR---LNRPKPIIAASIG 123
Query: 393 SYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAE 452
YGA+L DGSEYRG+Y + + ELI++HRPR++ALI+ G D+LA ET+P EA +
Sbjct: 124 PYGAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVR 181
Query: 453 LIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLL 512
L+KE+P AWISFS KD H G A + Q+ A+G+NC ++ SL+
Sbjct: 182 LLKEFPETYAWISFSAKDGLHISDGTPAADCAS--WLDEHRQIAALGINCTPLQHIPSLI 239
Query: 513 TSAGRDV--PLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNA 570
++ P++ PNSGE +DP + W S W + G + +GGCCRT
Sbjct: 240 EELKKNTSKPIIVYPNSGEQYDPETKTWNGAACAESYGASARTWHEKGARLIGGCCRTKP 299
Query: 571 DDMKNV 576
++++ +
Sbjct: 300 ENIQEI 305
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA----IVLEEKRDPAIASRHVRVAGSLGSY 56
++ EGF GLSE ++ +LI +V EA LEE R + +A S+G Y
Sbjct: 70 STFEGFAAR-GLSEAEARRLIELSVSIAAEARDEFWSLEENR---LNRPKPIIAASIGPY 125
Query: 57 GAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELI 116
GA+L DGSEYRG+Y + + ELI++HRPR++ALI+ G D+LA ET+P EA + L+
Sbjct: 126 GAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLL 183
Query: 117 KEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLL 174
KE+P AWISFS KD H G A + Q+ A+G+NC ++ SL+
Sbjct: 184 KEFPETYAWISFSAKDGLHISDGTPAADCAS--WLDEHRQIAALGINCTPLQHIPSLI 239
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA
PE=1 SV=1
Length = 338
Score = 186 bits (471), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 181/329 (55%), Gaps = 25/329 (7%)
Query: 268 INEFILE-NKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVR 326
I +F+ + + +I GG ++L +H + N +PLW + L S + H DY+
Sbjct: 6 ITDFLHQAGRAAVIAGGLGTELQRHGADLN-----DPLWSAKCLLSCPHLIRQVHLDYLE 60
Query: 327 AGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS---- 382
G DI+ T +YQA+++GF + G S+++ L+R +V+ +EA L +R +S
Sbjct: 61 NGADIIITASYQATIQGF-KAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGD 119
Query: 383 -------RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDL 435
R + +AGS+GSYGA+L DGSE+ G+Y D+ + L D+HR +++ L G+DL
Sbjct: 120 DSRILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDL 179
Query: 436 LAIETLPAQEEAMVLAELIKEYPGLK-AWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ 494
LA E +P + EA A+L++E + AW +F+ KD + GD A++ +
Sbjct: 180 LAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGS--IAESCDK 237
Query: 495 LVAVGVNCLAPHYVESLLTSAGRDV--PLLCCPNSGETFDPGQRIWMNKDSVPSVD--TY 550
+VAVG+NC P ++ L+ + P++ PNSGET+D ++ W V D +Y
Sbjct: 238 VVAVGINCTPPRFIHDLILLLKKVTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSY 297
Query: 551 VPRWLDTGVKYVGGCCRTNADDMKNVNQV 579
V +W ++G VGGCCRT D ++ + ++
Sbjct: 298 VDKWCESGASLVGGCCRTTPDTIRGIYKI 326
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 106/186 (56%), Gaps = 15/186 (8%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIAS-----------RHVRV 49
A+++GF + G S+++ L+R +V+ +EA L +R +S R + +
Sbjct: 73 ATIQGF-KAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILI 131
Query: 50 AGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEA 109
AGS+GSYGA+L DGSE+ G+Y D+ + L D+HR +++ L G+DLLA E +P + EA
Sbjct: 132 AGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEA 191
Query: 110 MVLAELIKEYPGLK-AWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPH 168
A+L++E + AW +F+ KD + GD A++ ++VAVG+NC P
Sbjct: 192 QAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGS--IAESCDKVVAVGINCTPPR 249
Query: 169 YVESLL 174
++ L+
Sbjct: 250 FIHDLI 255
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1
Length = 323
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 172/310 (55%), Gaps = 18/310 (5%)
Query: 279 LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQ 338
+IDGGF++QL + +G D ++PLW +A L + V + H Y+ AG D++ +++YQ
Sbjct: 16 VIDGGFATQL-EALGAD----INDPLWSAACLITRPHLVKEVHMQYLEAGADVIISSSYQ 70
Query: 339 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA----IALEEKRDPAIASRHVRVAGSLGSY 394
A++ GF+ G+S ++ L+R +VK EA ++ I +R + VA S+GSY
Sbjct: 71 ATIPGFIAR-GMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRAL-VAASIGSY 128
Query: 395 GAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELI 454
GA+L DGSEY G Y T ++L D+HR R++ L G DL+A E +P Q EA L EL+
Sbjct: 129 GAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELL 188
Query: 455 KEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLT 513
+E + +WI FS D K+ C G+ F + + A ++ VGVNC P ++E ++
Sbjct: 189 EEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASE--KVAVVGVNCTPPQFIEGIIC 246
Query: 514 SAGRDV--PLLCCPNSGETFDPGQRIWMNKDSV--PSVDTYVPRWLDTGVKYVGGCCRTN 569
+ + PNSGE +D + W+ + + S D RW + G +GGCCRT
Sbjct: 247 EFRKQTKKAIAVYPNSGEVWDGRAKRWLPVECLGHKSFDALAKRWQEAGASLIGGCCRTT 306
Query: 570 ADDMKNVNQV 579
++ V+++
Sbjct: 307 PSTIRAVSKI 316
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA----IVLEEKRDPAIASRHVRVAGSLGSY 56
A++ GF+ G+S ++ L+R +VK EA ++ I +R + VA S+GSY
Sbjct: 71 ATIPGFIAR-GMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRAL-VAASIGSY 128
Query: 57 GAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELI 116
GA+L DGSEY G Y T ++L D+HR R++ L G DL+A E +P Q EA L EL+
Sbjct: 129 GAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELL 188
Query: 117 KEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLL 174
+E + +WI FS D K+ C G+ F + + A ++ VGVNC P ++E ++
Sbjct: 189 EEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASE--KVAVVGVNCTPPQFIEGII 245
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase OS=Escherichia coli (strain K12)
GN=mmuM PE=1 SV=2
Length = 310
Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 163/311 (52%), Gaps = 19/311 (6%)
Query: 268 INEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRA 327
+ + + + L+DG +++L E + LW + L N + + + H DY RA
Sbjct: 7 LRALLDKQDILLLDGAMATEL-----EARGCNLADSLWSAKVLVENPELIREVHLDYYRA 61
Query: 328 GCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRV 387
G T +YQA+ GF GL E QS LI +V+ ++A +P + + V
Sbjct: 62 GAQCAITASYQATPAGFAAR-GLDEAQSKALIGKSVELARKAREAYLAENPQAGT--LLV 118
Query: 388 AGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEA 447
AGS+G YGA+L DGSEYRGDY S + +HRPR+EAL+ G DLLA ETLP E
Sbjct: 119 AGSVGPYGAYLADGSEYRGDYHCSV--EAFQAFHRPRVEALLDAGADLLACETLPNFSEI 176
Query: 448 MVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYA--KNPAQLVAVGVNCLAP 505
LAEL+ YP +AW SF+ +D +H G RDV A Q+VA+G+NC+A
Sbjct: 177 EALAELLTAYPRARAWFSFTLRDSEHLSDGTPL----RDVVALLAGYPQVVALGINCIAL 232
Query: 506 HYVESLLTSA-GRDV-PLLCCPNSGETFDPGQRIWMNK-DSVPSVDTYVPRWLDTGVKYV 562
+ L G V PL+ PNSGE +D + W + + + Y+P+W G + +
Sbjct: 233 ENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCAQLADYLPQWQAAGARLI 292
Query: 563 GGCCRTNADDM 573
GGCCRT D+
Sbjct: 293 GGCCRTTPADI 303
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFL 60
A+ GF GL E QS LI +V+ ++A +P + + VAGS+G YGA+L
Sbjct: 73 ATPAGFAAR-GLDEAQSKALIGKSVELARKAREAYLAENPQAGT--LLVAGSVGPYGAYL 129
Query: 61 HDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYP 120
DGSEYRGDY S + +HRPR+EAL+ G DLLA ETLP E LAEL+ YP
Sbjct: 130 ADGSEYRGDYHCSV--EAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTAYP 187
Query: 121 GLKAWISFSCKDEKHTCHGDKFGLIARDVYA--KNPAQLVAVGVNCLA 166
+AW SF+ +D +H G RDV A Q+VA+G+NC+A
Sbjct: 188 RARAWFSFTLRDSEHLSDGTPL----RDVVALLAGYPQVVALGINCIA 231
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1
PE=1 SV=1
Length = 326
Score = 179 bits (455), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 167/308 (54%), Gaps = 16/308 (5%)
Query: 279 LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQ 338
++DGGF++QL H N +PLW + L N + + H +Y+ AG DIV T++YQ
Sbjct: 22 VVDGGFATQLEIHGAAIN-----DPLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQ 76
Query: 339 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAI-ALEEKRDPAIASRHVR--VAGSLGSYG 395
A++ GF+ GLS ++S L++ +V+ EA EK + R VA S+GSYG
Sbjct: 77 ATIPGFLSR-GLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYG 135
Query: 396 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 455
A+L DGSEY G Y ++ + +L D+HR R++ L++ G DLLA ET+P + EA EL++
Sbjct: 136 AYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLE 195
Query: 456 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTS 514
E + AWI F+ D + G+ F + N + AVG+NC P ++E+L+
Sbjct: 196 EEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSN--NIYAVGINCAPPQFIENLIRK 253
Query: 515 AGR--DVPLLCCPNSGETFDPGQRIWMNKDSV--PSVDTYVPRWLDTGVKYVGGCCRTNA 570
+ ++ PNSGE +D + W+ + + +W D G K +GGCCRT
Sbjct: 254 FAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTP 313
Query: 571 DDMKNVNQ 578
+ +++
Sbjct: 314 STINAISR 321
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAI-VLEEKRDPAIASRHVR--VAGSLGSYG 57
A++ GF+ GLS ++S L++ +V+ EA EK + R VA S+GSYG
Sbjct: 77 ATIPGFLSR-GLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYG 135
Query: 58 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 117
A+L DGSEY G Y ++ + +L D+HR R++ L++ G DLLA ET+P + EA EL++
Sbjct: 136 AYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLE 195
Query: 118 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLL 174
E + AWI F+ D + G+ F + N + AVG+NC P ++E+L+
Sbjct: 196 EEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSN--NIYAVGINCAPPQFIENLI 251
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var.
italica GN=HMT1 PE=1 SV=1
Length = 326
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 16/308 (5%)
Query: 279 LIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQ 338
++DGGF++QL H N +PLW + L + + + H +Y+ AG D+V T++YQ
Sbjct: 22 VVDGGFATQLEIHGAAIN-----DPLWSAVSLIKDPELIKRVHMEYLEAGADVVVTSSYQ 76
Query: 339 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAI-ALEEKRDPAIASRHVR--VAGSLGSYG 395
A++ GF+ GLS ++S L++ +VK EA +K + R VA S+GSYG
Sbjct: 77 ATIPGFLSR-GLSMEESESLLQKSVKLAVEARDRFWDKVSKTSGHSYNRALVAASIGSYG 135
Query: 396 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 455
A+L DGSEY G Y + + +L D+HR RI+ L++ DLLA ET+P + EA EL++
Sbjct: 136 AYLADGSEYSGSYGEDVSLDKLKDFHRRRIQVLVEASPDLLAFETIPNKLEAQACVELLE 195
Query: 456 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTS 514
E + AWI F+ D ++ G+ F + N + AVG+NC P ++++L+
Sbjct: 196 EENVQIPAWICFTSVDGENAPSGESFQECLETLNKSN--NICAVGINCAPPQFMDNLIRK 253
Query: 515 AGR--DVPLLCCPNSGETFDPGQRIWMNKDSV--PSVDTYVPRWLDTGVKYVGGCCRTNA 570
+ ++ PNSGE +D + W+ + + +W D G K +GGCCRT
Sbjct: 254 FSKLTQKAIVVYPNSGEVWDGKAKKWLPSQCFGDAEFEMFATKWRDLGAKLIGGCCRTTP 313
Query: 571 DDMKNVNQ 578
+K +++
Sbjct: 314 STIKAISR 321
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 99/178 (55%), Gaps = 7/178 (3%)
Query: 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEA---IVLEEKRDPAIASRHVRVAGSLGSYG 57
A++ GF+ GLS ++S L++ +VK EA + + + VA S+GSYG
Sbjct: 77 ATIPGFLSR-GLSMEESESLLQKSVKLAVEARDRFWDKVSKTSGHSYNRALVAASIGSYG 135
Query: 58 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIK 117
A+L DGSEY G Y + + +L D+HR RI+ L++ DLLA ET+P + EA EL++
Sbjct: 136 AYLADGSEYSGSYGEDVSLDKLKDFHRRRIQVLVEASPDLLAFETIPNKLEAQACVELLE 195
Query: 118 EYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLL 174
E + AWI F+ D ++ G+ F + N + AVG+NC P ++++L+
Sbjct: 196 EENVQIPAWICFTSVDGENAPSGESFQECLETLNKSN--NICAVGINCAPPQFMDNLI 251
>sp|Q5RF33|DSCR3_PONAB Down syndrome critical region protein 3 homolog OS=Pongo abelii
GN=DSCR3 PE=2 SV=1
Length = 297
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 99/117 (84%)
Query: 580 PVKFSITPESLTNARDKFNIPRFRISGHLDSTECSVVRPFTGEIVIEQTELPIKSVELQL 639
PV F+ITPE+L NAR++ +P+F + GHL+ST C + +P TGE+V+E +E I+SVELQL
Sbjct: 154 PVHFTITPETLQNARERALLPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQL 213
Query: 640 VRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTLITSNFKI 696
VRVETCGCAEGY+RDATEIQNIQI +G+V G+ +PIYMVFPRLFTCPTL T+NFK+
Sbjct: 214 VRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKV 270
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 194 SRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVFVNVQYNLKCEL 253
S KPIQ+++ +E+ GK PSG T+IPFE PL K N+ L+ETYHGVFVN+QY L+C++
Sbjct: 65 SVKPIQIINSNIEMVKPGKFPSGKTEIPFEFPLHVKGNKVLYETYHGVFVNIQYTLRCDM 124
Query: 254 KRSHFNILSKDLQKINEFILEN 275
KRS +L+KDL K EFI+ +
Sbjct: 125 KRS---LLAKDLTKTCEFIVHS 143
>sp|O14972|DSCR3_HUMAN Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3
PE=2 SV=1
Length = 297
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/117 (64%), Positives = 98/117 (83%)
Query: 580 PVKFSITPESLTNARDKFNIPRFRISGHLDSTECSVVRPFTGEIVIEQTELPIKSVELQL 639
PV F+ITPE+L N +++ +P+F + GHL+ST C + +P TGE+V+E +E I+SVELQL
Sbjct: 154 PVDFTITPETLQNVKERALLPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQL 213
Query: 640 VRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTLITSNFKI 696
VRVETCGCAEGY+RDATEIQNIQI +G+V G+ +PIYMVFPRLFTCPTL T+NFK+
Sbjct: 214 VRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKV 270
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 194 SRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVFVNVQYNLKCEL 253
S KPIQ+++ +E+ GK PSG T+IPFE PL K N+ L+ETYHGVFVN+QY L+C++
Sbjct: 65 SVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVLYETYHGVFVNIQYTLRCDM 124
Query: 254 KRSHFNILSKDLQKINEFILEN 275
KRS +L+KDL K EFI+ +
Sbjct: 125 KRS---LLAKDLTKTCEFIVHS 143
>sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 homolog OS=Mus musculus
GN=Dscr3 PE=2 SV=1
Length = 297
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 99/117 (84%)
Query: 580 PVKFSITPESLTNARDKFNIPRFRISGHLDSTECSVVRPFTGEIVIEQTELPIKSVELQL 639
PV F+ITPE+L N +++ ++P+F I GHL+ST C++ +P TGE+V+E ++ I+S+ELQL
Sbjct: 154 PVDFTITPETLQNVKERASLPKFFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQL 213
Query: 640 VRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTLITSNFKI 696
VRVETCGCAEGY+RDATEIQNIQI +G++ + +P+YMVFPRLFTCPTL T+NFK+
Sbjct: 214 VRVETCGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKV 270
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 62/82 (75%), Gaps = 3/82 (3%)
Query: 194 SRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVFVNVQYNLKCEL 253
S KPIQ+++ +++ GK+PSG T++PFE PL K ++ L+ETYHGVFVN+QY L+C++
Sbjct: 65 SVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVLYETYHGVFVNIQYTLRCDM 124
Query: 254 KRSHFNILSKDLQKINEFILEN 275
+RS +L+KDL K EFI+ +
Sbjct: 125 RRS---LLAKDLTKTCEFIVHS 143
>sp|Q54DI8|DSCR3_DICDI Down syndrome critical region protein 3 homolog OS=Dictyostelium
discoideum GN=DDB_G0292212 PE=3 SV=1
Length = 304
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 89/126 (70%), Gaps = 2/126 (1%)
Query: 573 MKNVNQVPVKFSITPESLTNAR--DKFNIPRFRISGHLDSTECSVVRPFTGEIVIEQTEL 630
MK+ + + F+ITP+SL N + K ++P F+ISG L S C++ F G ++IE +
Sbjct: 153 MKSTPESLITFNITPDSLVNFKKISKADVPTFKISGGLVSAICNINEAFQGHMIIESADT 212
Query: 631 PIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTLI 690
IKSVELQLVRVETCGCA+GY+R+ TEIQNIQI +G+++ IP+YMVFPRLFTC +
Sbjct: 213 VIKSVELQLVRVETCGCADGYAREVTEIQNIQIADGDIWRNFKIPLYMVFPRLFTCISTA 272
Query: 691 TSNFKI 696
FKI
Sbjct: 273 GKTFKI 278
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 194 SRKPIQLLSIELELA-AAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVFVNVQYNLKCE 252
S KPI L+ + + GK +G T++PFE L+ PN+ L++TYHGVFVN+QY++KC+
Sbjct: 65 SLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQLYDTYHGVFVNIQYSIKCD 124
Query: 253 LKRSHFNILSKDLQKINEFILE 274
+KR ILSKDL K EFI+E
Sbjct: 125 VKRG---ILSKDLSKTIEFIVE 143
>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MHT1 PE=1 SV=1
Length = 324
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 161/336 (47%), Gaps = 36/336 (10%)
Query: 268 INEFILEN--KLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSN---------RQA 316
I E I+E+ K+ ++DGG ++L E+ ++P+W +A S R+
Sbjct: 6 IKELIVEHPGKVLILDGGQGTEL-----ENRGININSPVWSAAPFTSESFWEPSSQERKV 60
Query: 317 VIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKR 376
V + +RD++ AG +I+ T TYQA+ + +SE+ S++ + +++ + ++ R
Sbjct: 61 VEEMYRDFMIAGANILMTITYQANFQS------ISENTSIKTLAAYKRFLDKIVSF--TR 112
Query: 377 DPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQG-GIDL 435
+ R++ GS+G + A H EY GDY + + +P++E Q IDL
Sbjct: 113 EFIGEERYL--IGSIGPWAA--HVSCEYTGDYGPHPENIDYYGFFKPQLENFNQNRDIDL 168
Query: 436 LAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIA---RDVYAKNP 492
+ ET+P E + ++ +I S D G I+ + + K
Sbjct: 169 IGFETIPNFHELKAILSWDEDIISKPFYIGLSVDDNSLLRDGTTLEEISVHIKGLGNKIN 228
Query: 493 AQLVAVGVNCLAPH---YVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMN-KDSVPSVD 548
L+ +GVNC++ + + +L +PLL PNSGE ++P ++ W + + +
Sbjct: 229 KNLLLMGVNCVSFNQSALILKMLHEHLPGMPLLVYPNSGEIYNPKEKTWHRPTNKLDDWE 288
Query: 549 TYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKFS 584
T V +++D G + +GGCCRT+ D+ + K+S
Sbjct: 289 TTVKKFVDNGARIIGGCCRTSPKDIAEIASAVDKYS 324
>sp|Q08985|SAM4_YEAST Homocysteine S-methyltransferase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SAM4 PE=1 SV=1
Length = 325
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 160/338 (47%), Gaps = 39/338 (11%)
Query: 268 INEFILEN--KLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCS------AFLH----SNRQ 315
+ +F+ +N K+ ++DGG ++L E+ + NP+W + +F +NR+
Sbjct: 6 LKQFLADNPKKVLVLDGGQGTEL-----ENRGIKVANPVWSTIPFISESFWSDESSANRK 60
Query: 316 AVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGL-SEDQSVQLIRDAVKYVKEAIALEE 374
V + D++ AG +I+ T TYQ S + ++ + + + L+ V + + I E+
Sbjct: 61 IVKEMFNDFLNAGAEILMTTTYQTSYKSVSENTPIRTLSEYNNLLNRIVDFSRNCIG-ED 119
Query: 375 KRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGG-I 433
K + G +G +GA H E+ GDY + Y +P++E + +
Sbjct: 120 KY----------LIGCIGPWGA--HICREFTGDYGAEPENIDFYQYFKPQLENFNKNDKL 167
Query: 434 DLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIA---RDVYAK 490
DL+ ET+P E + + +I S + G IA +D+ K
Sbjct: 168 DLIGFETIPNIHELKAILSWDESILSRPFYIGLSVHEHGVLRDGTTMEEIAQVIKDLGDK 227
Query: 491 NPAQLVAVGVNCLAPHYVESLLTSAGRDVP---LLCCPNSGETFDPGQRIWM-NKDSVPS 546
+G+NC++ + +L S + +P LL PNSGE +D ++IW+ N D + S
Sbjct: 228 INPNFSFLGINCVSFNQSPDILESLHQALPNMALLAYPNSGEVYDTEKKIWLPNSDKLNS 287
Query: 547 VDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKFS 584
DT V +++ +G + +GGCCRT+ D++ ++ K++
Sbjct: 288 WDTVVKQYISSGARIIGGCCRTSPKDIQEISAAVKKYT 325
>sp|P87138|YDM7_SCHPO Uncharacterized protein C57A7.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC57A7.07c PE=4 SV=2
Length = 308
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 47/322 (14%)
Query: 277 LYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNT 336
+ ++DGG ++ L K ++++E LW S L + V+ H ++++ CDI++T T
Sbjct: 1 MLMLDGGSTAILPKL--PESISESR--LWTSEALVRYPEIVVKHHEEFLKV-CDIISTFT 55
Query: 337 YQASVEGFVQHL-GLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYG 395
YQ + + + G+ Q Y +E + L K +A LGS+
Sbjct: 56 YQLDASIYDEKVEGVPLKQVYANSIGLPVYAREHLGLPNKY----------IALCLGSHA 105
Query: 396 AFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGG------IDLLAIETLPAQEEAMV 449
A + EY+ Y T + L ++H+ RIEA+ ID +A E+LP EA V
Sbjct: 106 ATIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFESLPHVTEAEV 165
Query: 450 LAELIKEYPGL--KAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHY 507
+ +LI++ G + WI+ +C + ++ I + + N + +GVNC +
Sbjct: 166 VCQLIQDMKGWSKRCWITCTCPERSTI---ERVSSIISKILSINHDSIWGIGVNC----F 218
Query: 508 VESLLTSAGRDVPLLCCPNSGETFDP-GQRIWMNKD---SVPSVDTYVP---RWLDTGVK 560
SLL + + L N P G+ ++ N D S S D P W K
Sbjct: 219 HLSLLEPIAKMLSSLLPSNITAILYPDGRGLYQNPDGTFSPGSTDHPAPSPEEWSTITAK 278
Query: 561 Y---------VGGCCRTNADDM 573
Y +GGCC TN + +
Sbjct: 279 YSNLHNGNLILGGCCETNYNHL 300
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 40 PAIASRHV-----RVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGG 94
P A H+ +A LGS+ A + EY+ Y T + L ++H+ RIEA+
Sbjct: 83 PVYAREHLGLPNKYIALCLGSHAATIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASN 142
Query: 95 ------IDLLAIETLPAQEEAMVLAELIKEYPGL--KAWISFSCKDEKHTCHGDKFGLIA 146
ID +A E+LP EA V+ +LI++ G + WI+ +C + ++ I
Sbjct: 143 PKAFEKIDFIAFESLPHVTEAEVVCQLIQDMKGWSKRCWITCTCPERSTI---ERVSSII 199
Query: 147 RDVYAKNPAQLVAVGVNCL 165
+ + N + +GVNC
Sbjct: 200 SKILSINHDSIWGIGVNCF 218
>sp|Q4JIJ3|METH_BOVIN Methionine synthase OS=Bos taurus GN=MTR PE=2 SV=1
Length = 1265
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 153/341 (44%), Gaps = 41/341 (12%)
Query: 261 LSKDLQKINEFILENKLYLIDGGFSSQLSKH-VGEDNVTEKD-----NPLWCSAFLHSNR 314
+ K LQ E IL+ ++ ++DGG + + +H + E++ ++ PL + + S
Sbjct: 14 MKKTLQDEIEAILQERIMVLDGGMGTMIQRHKLSEEDFRGQEFKDHARPLKGNNDILSIT 73
Query: 315 Q--AVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIAL 372
Q + H++Y+ AG DI+ TNT+ ++ D ++ + + +A
Sbjct: 74 QPNVIYQIHKEYLLAGADIIETNTFSSTSIA-------QADYGLEHLAYRMNMCSAGVAR 126
Query: 373 EEKRDPAIASRHVR-VAGSLGSYGAFLH-DGSEYRGDYIDSTTPQELIDYHRPRIEALIQ 430
+ D ++ + R VAG+LG L S R DY + T EL++ ++ + + L+
Sbjct: 127 KAAEDISLQTGIKRYVAGALGPTNKTLSVSPSVERPDY-RNITFDELVEAYKEQAKGLLD 185
Query: 431 GGIDLLAIETL--PAQEEAMVLAE---LIKEYPGLKAWISFSCKDEK-HTCHGDKFGLIA 484
GG+D+L IET+ A +A + A +EY +IS + D+ T G
Sbjct: 186 GGVDILLIETIFDTANAKAALFAVQKLFEEEYVPRPVFISGTIVDKSGRTLSGQTGEAFV 245
Query: 485 RDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGR--DVPLLCCPNSG--ETFDPGQRIWM 539
V +P + +G+NC L + + + G+ +LC PN+G TF
Sbjct: 246 ISVSHADP---LCIGLNCALGAAEMRPFIETIGKCTTAYVLCYPNAGLPNTFG------- 295
Query: 540 NKDSVPSVDTYVPR--WLDTGVKYVGGCCRTNADDMKNVNQ 578
+ D P V + +D V VGGCC T D ++ + +
Sbjct: 296 DYDETPHVMAMHLKDFAVDGLVNIVGGCCGTTPDHIREIAE 336
>sp|A6H5Y3|METH_MOUSE Methionine synthase OS=Mus musculus GN=Mtr PE=2 SV=1
Length = 1253
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 152/347 (43%), Gaps = 52/347 (14%)
Query: 261 LSKDLQKINEFILENKLYLIDGGFSSQLSK------HVGEDNVTEKDNPLWCSAFLHSNR 314
+ K LQ E IL ++ ++DGG + + + H + PL + + S
Sbjct: 1 MKKTLQDEIEAILRKRIMVLDGGMGTMIQRYKLSEEHFQGQEFKDHSRPLKGNNDILSIT 60
Query: 315 QA--VIDTHRDYVRAGCDIVTTNTYQ----ASVEGFVQHLGLSEDQSVQLIRDAVKYVKE 368
Q + H++Y+ AG DI+ TNT+ A + ++HL ++ D + E
Sbjct: 61 QPDIIYQIHKEYLLAGADIIETNTFSSTSIAQADYGLEHLAYRMNKCSA---DVARKAAE 117
Query: 369 AIALEE--KRDPAIASRHVRVAGSLGSYGAFLH-DGSEYRGDYIDSTTPQELIDYHRPRI 425
I L+ KR VAG+LG L S R DY + T EL+D ++ +
Sbjct: 118 EITLQTGVKR---------FVAGALGPTNKTLSVSPSVERPDY-RNITFDELVDAYQEQA 167
Query: 426 EALIQGGIDLLAIETL--PAQEEAMVLA--ELIKE--YPGLKAWISFSCKDEK-HTCHGD 478
+ L+ G +D+L IET+ A +A + A L +E P +IS + D+ T G
Sbjct: 168 KGLLDGRVDILLIETIFDTANAKAALFAIQNLFEENYAPPRPIFISGTIVDKSGRTLSGQ 227
Query: 479 KFGLIARDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGR--DVPLLCCPNSG--ETFDP 533
V +P + +G+NC L + + + G+ +LC PN+G TF
Sbjct: 228 TGEAFVTSVSHSDP---LCIGLNCSLGAAEMRPFIETIGKCTTAYVLCYPNAGLPNTFG- 283
Query: 534 GQRIWMNKDSVPS-VDTYVPRW-LDTGVKYVGGCCRTNADDMKNVNQ 578
+ D PS + T++ + +D V VGGCC + D ++ + +
Sbjct: 284 ------DYDETPSTMATHLKDFAVDGLVNIVGGCCGSTPDHIREIAE 324
>sp|Q9Z2Q4|METH_RAT Methionine synthase OS=Rattus norvegicus GN=Mtr PE=2 SV=1
Length = 1253
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 52/347 (14%)
Query: 261 LSKDLQKINEFILENKLYLIDGGFSSQLSKH-VGEDNVTEKD-----NPLWCSAFLHSNR 314
+ K LQ E IL ++ ++DGG + + ++ + E+N ++ PL + + S
Sbjct: 1 MKKTLQDEIEAILRKRIMVLDGGMGTMIQRYKLSEENFQGQEFKDHSRPLKGNNDILSIT 60
Query: 315 Q--AVIDTHRDYVRAGCDIVTTNTYQ----ASVEGFVQHLGLSEDQSVQLIRDAVKYVKE 368
Q + H++Y+ AG DI+ TNT+ A + ++HL ++ D + E
Sbjct: 61 QPDVIYQIHKEYLLAGADIIETNTFSSTSIAQADYGLEHLAYRMNKCSA---DVARKAAE 117
Query: 369 AIALEE--KRDPAIASRHVRVAGSLGSYGAFLH-DGSEYRGDYIDSTTPQELIDYHRPRI 425
I L+ KR VAGSLG L S R DY + T EL++ ++ +
Sbjct: 118 EITLQTGVKR---------FVAGSLGPTNKTLSVSPSVERPDY-RNITFDELVEAYQEQA 167
Query: 426 EALIQGGIDLLAIETL----PAQEEAMVLAELIKE-YPGLKA-WISFSCKDEK-HTCHGD 478
+ L+ GG+D+L IET+ A+ L +L +E Y + +IS + D+ T G
Sbjct: 168 KGLLDGGVDILLIETIFDTANAKAALFALQKLFEENYASPRPIFISGTIVDKSGRTLSGQ 227
Query: 479 KFGLIARDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGR--DVPLLCCPNSG--ETFDP 533
V +P + +G+NC L + + + G+ +LC PN+G TF
Sbjct: 228 TGEAFVTSVSHSDP---LCIGLNCALGAAEMRPFIETIGKCTTAYVLCYPNAGLPNTFG- 283
Query: 534 GQRIWMNKDSVPSVDTYVPR--WLDTGVKYVGGCCRTNADDMKNVNQ 578
+ D P++ + +D V VGGCC + D ++ + +
Sbjct: 284 ------DYDETPAMMAMHLKDFAVDGLVNVVGGCCGSTPDHIREIAE 324
>sp|Q04898|YM99_YEAST Putative uncharacterized protein YMR321C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YMR321C PE=4
SV=1
Length = 105
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 491 NPAQLVAVGVNCLAPHYVESLLTSAGRDVP---LLCCPNSGETFDPGQRIWM-NKDSVPS 546
NP L +G+NC++ + +L S + +P LL PNSGE +D ++IW+ N D + S
Sbjct: 9 NP-NLSFLGINCVSFNQSPDILESLHQALPNMALLAYPNSGEVYDTEKKIWLPNSDKLNS 67
Query: 547 VDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKFS 584
DT V +++ +G + +GGCCRT+ D++ ++ K++
Sbjct: 68 WDTVVKQYISSGARIIGGCCRTSPKDIQEISAAVKKYT 105
>sp|Q54P92|METH_DICDI Methionine synthase OS=Dictyostelium discoideum GN=mtr PE=3 SV=1
Length = 1260
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 36/324 (11%)
Query: 272 ILENKLYLIDGGFSSQLSKHVGEDNVTE----KDNP--LWCSAFLHSNRQAVI--DTHRD 323
IL ++ ++DG +++ K +DN KD P L + L S Q I + H
Sbjct: 19 ILSERIMVLDGAMGTEIQKFKLKDNDYRGEEFKDFPHELGGNNDLLSLTQPHIIREIHCK 78
Query: 324 YVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASR 383
Y+ AG D + TNT+ ++ F Q E ++ ++ + K A K+DP SR
Sbjct: 79 YLEAGADFIETNTFNGNI--FSQADYKMEHLVKRINIESARLAKSACEEYTKKDP---SR 133
Query: 384 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIET--- 440
V G++G + EL+ + ++EAL++GGID++ +ET
Sbjct: 134 PRFVCGAVGPTNKTASISPSVERPEARNVLFDELVSGYLEQVEALVEGGIDVILVETVFD 193
Query: 441 -LPAQEEAMVLAELIKEY-PGLKAWISFSCKDEK-HTCHGDKFGLIARDVYAKNPAQLVA 497
L + + E K Y P L ++S + D+ T G V + N L+
Sbjct: 194 SLNCKAALFAIEEFFKTYSPRLPVFVSGTIVDKSGRTLSGQTGEAFYTSVASAN---LMV 250
Query: 498 VGVNC-LAPHYVESLLTSAGR--DVPLLCCPNSG--ETFDPGQRIWMNKDSVPS-VDTYV 551
G+NC L + L + + + + C PN+G TF D P + +
Sbjct: 251 FGLNCALGAQEMRPFLQNISKCSECYVSCYPNAGLPNTFG-------GYDETPEMMAEQI 303
Query: 552 PRWLDTG-VKYVGGCCRTNADDMK 574
+ ++G + VGGCC T+ D ++
Sbjct: 304 KEFAESGLLNIVGGCCGTSPDHIR 327
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 78 ELIDYHRPRIEALIQGGIDLLAIET----LPAQEEAMVLAELIKEY-PGLKAWISFSCKD 132
EL+ + ++EAL++GGID++ +ET L + + E K Y P L ++S + D
Sbjct: 166 ELVSGYLEQVEALVEGGIDVILVETVFDSLNCKAALFAIEEFFKTYSPRLPVFVSGTIVD 225
Query: 133 EK-HTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164
+ T G V + N L+ G+NC
Sbjct: 226 KSGRTLSGQTGEAFYTSVASAN---LMVFGLNC 255
>sp|Q99707|METH_HUMAN Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2
Length = 1265
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 147/344 (42%), Gaps = 47/344 (13%)
Query: 261 LSKDLQKINEFILENKLYLIDGGFSSQLSK------HVGEDNVTEKDNPLWCSAFLHSNR 314
L K L+ IL+ ++ ++DGG + + + H + PL + + S
Sbjct: 14 LKKTLRDEINAILQKRIMVLDGGMGTMIQREKLNEEHFRGQEFKDHARPLKGNNDILSIT 73
Query: 315 Q--AVIDTHRDYVRAGCDIVTTNTYQ----ASVEGFVQHLGLSEDQ-SVQLIRDAVKYVK 367
Q + H++Y+ AG DI+ TNT+ A + ++HL + S + R A + V
Sbjct: 74 QPDVIYQIHKEYLLAGADIIETNTFSSTSIAQADYGLEHLAYRMNMCSAGVARKAAEEVT 133
Query: 368 EAIALEEKRDPAIASRHVRVAGSLGSYGAFLH-DGSEYRGDYIDSTTPQELIDYHRPRIE 426
++ VAG+LG L S R DY + T EL++ ++ + +
Sbjct: 134 LQTGIKR-----------FVAGALGPTNKTLSVSPSVERPDY-RNITFDELVEAYQEQAK 181
Query: 427 ALIQGGIDLLAIETL----PAQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFG 481
L+ GG+D+L IET+ A+ L L +E Y +IS + D+ + G
Sbjct: 182 GLLDGGVDILLIETIFDTANAKAALFALQNLFEEKYAPRPIFISGTIVDKSGRTLSGQTG 241
Query: 482 LIARDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGR--DVPLLCCPNSG--ETFDPGQR 536
V + + + + +G+NC L + + G+ +LC PN+G TF
Sbjct: 242 --EGFVISVSHGEPLCIGLNCALGAAEMRPFIEIIGKCTTAYVLCYPNAGLPNTFG---- 295
Query: 537 IWMNKDSVPSVDTYVPR--WLDTGVKYVGGCCRTNADDMKNVNQ 578
+ D PS+ + +D V VGGCC + D ++ + +
Sbjct: 296 ---DYDETPSMMAKHLKDFAMDGLVNIVGGCCGSTPDHIREIAE 336
>sp|Q5E814|METH_VIBF1 Methionine synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=metH PE=3 SV=1
Length = 1226
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 131/322 (40%), Gaps = 30/322 (9%)
Query: 273 LENKLYLIDGGFSSQLS--KHVGEDNVTEKDNPLWCSA------FLHSNRQAVIDTHRDY 324
L ++ LIDGG + + K ED E+ N C + S Q + D H Y
Sbjct: 14 LSERILLIDGGMGTMIQGYKFEEEDYRGERFNKWHCDLKGNNDLLVLSQPQIIRDIHEAY 73
Query: 325 VRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRH 384
+ AG DI+ TNT+ A+ + S + + +A K +E ++ P ++
Sbjct: 74 LEAGADILETNTFNATTIAMADYDMESLSEEINF--EAAKLAREVADKWTEKTP---NKP 128
Query: 385 VRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE----T 440
VAG LG + + + EL++ + ALI+GG DL+ IE T
Sbjct: 129 RYVAGVLGPTNRTCSISPDVNDPGFRNVSFDELVEAYSESTRALIRGGSDLILIETIFDT 188
Query: 441 LPAQEEAMVLAELIKEYP-GLKAWISFSCKDEK-HTCHGDKFGLIARDVYAKNPAQLVAV 498
L A+ + + + +E L IS + D T G + P ++
Sbjct: 189 LNAKACSFAVESVFEELDITLPVMISGTITDASGRTLSGQTTEAFYNALRHVKP---ISF 245
Query: 499 GVNC-LAPHYVESLLTSAGR--DVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL 555
G+NC L P + ++ R + + PN+G G+ +D + +V W
Sbjct: 246 GLNCALGPDELREYVSDLSRISECYVSAHPNAGLPNAFGEYDLSPED----MAEHVAEWA 301
Query: 556 DTG-VKYVGGCCRTNADDMKNV 576
+G + +GGCC T + ++ +
Sbjct: 302 SSGFLNLIGGCCGTTPEHIRQM 323
>sp|A8XY95|METH_CAEBR Probable methionine synthase OS=Caenorhabditis briggsae GN=nos-1
PE=3 SV=2
Length = 1273
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 132/322 (40%), Gaps = 38/322 (11%)
Query: 272 ILENKLYLIDGGFSSQLSKHVGEDN------VTEKDNPLWCSAFLHS-NRQAVI-DTHRD 323
I + ++ +IDG + + + E++ + + D PL + L S R +I H+
Sbjct: 13 IAKERIMIIDGAMGTMIQREYMEEHDFRGEILKDHDKPLKGNNDLLSITRPDIIYKIHKL 72
Query: 324 YVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASR 383
Y+ AG D + TNT+ + D + + + Y +A D A+
Sbjct: 73 YLEAGADFIETNTFSGTTIA-------QADYHCEHLVHEINYQSALVARRACDDVGAATG 125
Query: 384 HVR-VAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL- 441
R V G++G L + T QEL+ + + +LIQGG+D+L +ET+
Sbjct: 126 IRRYVCGAIGPTNRTLSISPSVEKPDFRNVTFQELVKAYGDQARSLIQGGVDVLLVETVF 185
Query: 442 -PAQEEAMVLA--ELIKE--YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 496
A +A + A L ++ P + ++S + D + G + + + +
Sbjct: 186 DSANAKAALFAIRTLFEDEGVPEIPVFLSGTIVDMSGRTLSGQTG--EAFLVSTKQGKPI 243
Query: 497 AVGVNCL-----APHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYV 551
AVG+NC +V+++ S D +LC PN+G G D P V
Sbjct: 244 AVGLNCALGAKDMRQFVQNM--SLWSDTLILCYPNAGLPNALG-----GYDETPEEMAEV 296
Query: 552 PRWL--DTGVKYVGGCCRTNAD 571
R D V +GGCC T D
Sbjct: 297 LREFAQDGLVNIIGGCCGTTPD 318
>sp|Q09582|METH_CAEEL Probable methionine synthase OS=Caenorhabditis elegans GN=nos-1
PE=1 SV=1
Length = 1249
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 38/322 (11%)
Query: 272 ILENKLYLIDGGFSSQLSKHVGEDN------VTEKDNPLWCSAFLHS-NRQAVI-DTHRD 323
I + ++ +IDG + + + E+ + + D PL + L S R +I H+
Sbjct: 13 IAKERIMIIDGAMGTMIQREYMEEEDFRGEILKDHDKPLKGNNDLLSITRPDIIYKIHKL 72
Query: 324 YVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS- 382
Y+ AG D V TNT+ + + ++ + L+ + + Y +A D A+
Sbjct: 73 YLEAGADFVETNTFSGTT------IAQADYRCEHLVHE-INYQSALVARRACDDVGAATG 125
Query: 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL- 441
R V G++G L + T QEL+ + + +LIQGG+D+L +ET+
Sbjct: 126 RRRYVCGAIGPTNRTLSISPSVEKPDFRNVTFQELVKAYGDQARSLIQGGVDVLLVETVF 185
Query: 442 -PAQEEAMVLA--ELIKE--YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 496
A +A + A L ++ P + ++S + D + G + + + +
Sbjct: 186 DSANAKAALFAIRTLFEDEGVPEMPVFLSGTIVDMSGRTLSGQTGEAF--LVSTKQGKPM 243
Query: 497 AVGVNCL-----APHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYV 551
AVG+NC +V+++ S D ++C PN+G G D P V
Sbjct: 244 AVGLNCALGAKDMRQFVDNM--SKWSDSFIICYPNAGLPNALG-----GYDETPEEMADV 296
Query: 552 PRWL--DTGVKYVGGCCRTNAD 571
R D V +GGCC T D
Sbjct: 297 LREFARDGLVNIIGGCCGTTPD 318
>sp|Q9AJQ8|METH_VIBFI Methionine synthase OS=Vibrio fischeri GN=metH PE=3 SV=1
Length = 1226
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 38/326 (11%)
Query: 273 LENKLYLIDGGFSSQLSKHVGEDNVTEKD------NPLWCSA------FLHSNRQAVIDT 320
L ++ LIDGG + + + E EKD N C + S Q + D
Sbjct: 14 LSERILLIDGGMGTMIQGYKFE----EKDYRGGRFNQWHCDLKGNNDLLVLSQPQIIRDI 69
Query: 321 HRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI 380
H Y+ AG DI+ TNT+ A+ + S + + +A K +E ++ P
Sbjct: 70 HEAYLEAGADILETNTFNATTIAMADYDMESLSEEINF--EAAKLAREVADKWTEKTP-- 125
Query: 381 ASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE- 439
++ VAG LG + + + EL++ + ALI+GG DL+ IE
Sbjct: 126 -NKPRYVAGVLGPTNRTCSISPDVNDPGFRNVSFDELVEAYSESTRALIRGGSDLILIET 184
Query: 440 ---TLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEK-HTCHGDKFGLIARDVYAKNPAQ 494
TL A+ + + + +E L IS + D T G + P
Sbjct: 185 IFDTLNAKACSFAVESVFEELGITLPVMISGTITDASGRTLSGQTTEAFYNALRHVKP-- 242
Query: 495 LVAVGVNC-LAPHYVESLLTSAGR--DVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYV 551
++ G+NC L P + ++ R + + PN+G G+ +D + +V
Sbjct: 243 -ISFGLNCALGPDELREYVSELSRISECYVSAHPNAGLPNAFGEYDLSPED----MAEHV 297
Query: 552 PRWLDTG-VKYVGGCCRTNADDMKNV 576
W +G + +GGCC T + ++ +
Sbjct: 298 AEWASSGFLNLIGGCCGTTPEHIRQM 323
>sp|Q87L95|METH_VIBPA Methionine synthase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=metH PE=3 SV=1
Length = 1226
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 139/352 (39%), Gaps = 43/352 (12%)
Query: 262 SKDLQKINEFILENKLYLIDGGFSSQLSKHVGE--DNVTEKDNPLWCSA------FLHSN 313
SK Q+I E L+ ++ LIDGG + + + E D E+ C + S
Sbjct: 3 SKVRQQI-EAQLKQRILLIDGGMGTMIQGYKLEEQDYRGERFANWHCDLKGNNDLLVLSQ 61
Query: 314 RQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALE 373
Q + + H Y+ AG DI+ TNT+ A+ + S + + A K +E
Sbjct: 62 PQLIKEIHSAYLEAGADILETNTFNATTIAMADYEMESLSEEINFA--AAKLAREVADEW 119
Query: 374 EKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGI 433
+ P + VAG LG + + + EL++ + ALI+GG
Sbjct: 120 TAKTP---DKPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDELVEAYSESTRALIRGGA 176
Query: 434 DLLAIE----TLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEK-HTCHGDKFGLIARDV 487
DL+ IE TL A+ A + + +E L IS + D T G +
Sbjct: 177 DLILIETIFDTLNAKACAFAVDSVFEELGVALPVMISGTITDASGRTLSGQTTEAFYNSL 236
Query: 488 YAKNPAQLVAVGVNC-LAPH----YVESLLTSAGRDV---PLLCCPNSGETFDPGQRIWM 539
P ++ G+NC L P YVE L + V P PN+ +D
Sbjct: 237 RHVRP---LSFGLNCALGPDELRPYVEELSRISESFVSAHPNAGLPNAFGEYDL------ 287
Query: 540 NKDSVPSVDTYVPRWLDTG-VKYVGGCCRTNADDMKNVNQVPVKFSITPESL 590
S + +V W +G + +GGCC T + ++ + Q +TP +L
Sbjct: 288 ---SPEDMAEHVKEWASSGFLNLIGGCCGTTPEHIRQMAQAVE--GVTPRAL 334
>sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metH PE=3 SV=1
Length = 1226
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 132/328 (40%), Gaps = 34/328 (10%)
Query: 261 LSKDLQKINEFILENKLYLIDGGFSSQL-SKHVGEDNVTEKDNPLWCSAFLHSNR----- 314
+ K++++ E L+ ++ LIDGG + + S + E++ W +N
Sbjct: 1 MGKEVRQQLEQQLKQRILLIDGGMGTMIQSYKLQEEDYRGARFVDWHCDLKGNNDLLVLT 60
Query: 315 --QAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIAL 372
Q + + H Y+ AG DI+ TNT+ ++ + + S ++ A K +E
Sbjct: 61 QPQIIKEIHSAYLEAGADILETNTFNSTTIAMADY--DMQSLSAEINFAAAKLAREVADE 118
Query: 373 EEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGG 432
+DP SR VAG LG + + T L++ + ALI+GG
Sbjct: 119 WTAKDP---SRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGLVEAYSESTRALIKGG 175
Query: 433 IDLLAIE----TLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEK-HTCHGDKFGLIARD 486
DL+ IE TL A+ A + + +E L IS + D T G
Sbjct: 176 SDLILIETIFDTLNAKACAFAVDSVFEELGISLPVMISGTITDASGRTLSGQTTEAFYNA 235
Query: 487 VYAKNPAQLVAVGVNC-LAP----HYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNK 541
+ P ++ G+NC L P YVE L S + + PN+G G+
Sbjct: 236 LRHVRP---ISFGLNCALGPDELRQYVEEL--SRISECYVSAHPNAGLPNAFGEY----D 286
Query: 542 DSVPSVDTYVPRWLDTG-VKYVGGCCRT 568
S + ++ W G + VGGCC T
Sbjct: 287 LSAEEMAEHIAEWAQAGFLNLVGGCCGT 314
>sp|Q7MHB1|METH_VIBVY Methionine synthase OS=Vibrio vulnificus (strain YJ016) GN=metH
PE=3 SV=1
Length = 1226
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 134/329 (40%), Gaps = 44/329 (13%)
Query: 273 LENKLYLIDGGFSSQLSKH-VGEDNVTEKDNPLWCSAFLHSNR-------QAVIDTHRDY 324
L+ ++ LIDGG + + + + E + + W S +N Q + + H Y
Sbjct: 13 LKQRILLIDGGMGTMIQGYKLQEQDYRGERFADWHSDLKGNNDLLVLTQPQLIKEIHHAY 72
Query: 325 VRAGCDIVTTNTYQASVEGFVQH--LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS 382
+ AG DI+ TNT+ A+ + LSE+ + + A + E A ++PA
Sbjct: 73 LEAGADILETNTFNATTIAMADYDMESLSEEINFAAAKLAREAADEWTA----KNPA--- 125
Query: 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE--- 439
+ VAG LG + + + EL++ + ALI+GG DL+ IE
Sbjct: 126 KPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDELVEAYSESTRALIRGGSDLILIETIF 185
Query: 440 -TLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEK-HTCHGDKFGLIARDVYAKNPAQLV 496
TL A+ A + + +E L IS + D T G + P +
Sbjct: 186 DTLNAKACAFAVESVFEELGFALPVMISGTITDASGRTLSGQTTEAFYNSLRHVRP---I 242
Query: 497 AVGVNC-LAPH----YVESLLTSAGRDV---PLLCCPNSGETFDPGQRIWMNKDSVPSVD 548
+ G+NC L P YVE L + V P PN+ +D S +
Sbjct: 243 SFGLNCALGPDELRPYVEELSRISETFVSTHPNAGLPNAFGEYDL---------SPEEMA 293
Query: 549 TYVPRWLDTG-VKYVGGCCRTNADDMKNV 576
+V W +G + +GGCC T + ++++
Sbjct: 294 EHVKEWAQSGFLNLIGGCCGTTPEHIRHM 322
>sp|Q8DCJ7|METH_VIBVU Methionine synthase OS=Vibrio vulnificus (strain CMCP6) GN=metH
PE=3 SV=1
Length = 1226
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 134/329 (40%), Gaps = 44/329 (13%)
Query: 273 LENKLYLIDGGFSSQLSKH-VGEDNVTEKDNPLWCSAFLHSNR-------QAVIDTHRDY 324
L+ ++ LIDGG + + + + E + + W S +N Q + + H Y
Sbjct: 13 LKQRILLIDGGMGTMIQGYKLQEQDYRGERFADWHSDLKGNNDLLVLTQPQLIKEIHHAY 72
Query: 325 VRAGCDIVTTNTYQASVEGFVQH--LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS 382
+ AG DI+ TNT+ A+ + LSE+ + R A + E A ++PA
Sbjct: 73 LEAGADILETNTFNATTIAMADYDMESLSEEINFAAARLAREAADEWTA----QNPA--- 125
Query: 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE--- 439
+ VAG LG + + + EL++ + ALI+GG DL+ IE
Sbjct: 126 KPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDELVEAYSESTRALIRGGSDLILIETIF 185
Query: 440 -TLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEK-HTCHGDKFGLIARDVYAKNPAQLV 496
TL A+ A + + +E L IS + D T G + P +
Sbjct: 186 DTLNAKACAFAVDSVFEELGFALPVMISGTITDASGRTLSGQTTEAFYNSLRHVRP---I 242
Query: 497 AVGVNC-LAPH----YVESLLTSAGRDV---PLLCCPNSGETFDPGQRIWMNKDSVPSVD 548
+ G+NC L P YVE L + V P PN+ +D S +
Sbjct: 243 SFGLNCALGPDELRPYVEELSRISETFVSTHPNAGLPNAFGEYDL---------SPEEMA 293
Query: 549 TYVPRWLDTG-VKYVGGCCRTNADDMKNV 576
+V W +G + +GGCC T + ++++
Sbjct: 294 EHVKEWAQSGFLNLIGGCCGTTPEHIRHM 322
>sp|O06745|YITJ_BACSU Bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase OS=Bacillus subtilis (strain 168) GN=yitJ PE=2
SV=1
Length = 612
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 110/260 (42%), Gaps = 37/260 (14%)
Query: 321 HRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI 380
H+ YV AG +I+ TNTY A+ +H GL ED ++ ++AVK + +
Sbjct: 46 HKAYVEAGANIIQTNTYGANYIKLSRH-GL-EDDIKKMNQEAVKIARASAG--------- 94
Query: 381 ASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIET 440
V G++G F + + Y D I + R ++ L+ D L +ET
Sbjct: 95 ---DAYVLGTMGGIRTF--NKNAYSLDEIKRS--------FREQLYLLLHEEPDGLLLET 141
Query: 441 LPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA--V 498
EEA + ++ ++ L ++ S ++ G R + A L A V
Sbjct: 142 YYDLEEAREVLKIARKETDLPIMLNVSMHEQGVLQDGTPLSDALRSI-----ADLGADIV 196
Query: 499 GVNC-LAPHYVESLLTSAG--RDVPLLCCPNSG-ETFDPGQRIWMNKDSVPSVDTYVPRW 554
G+NC L P+++ L+ DV L PNS + + G+ ++ D+ +
Sbjct: 197 GINCRLGPYHMIEALSEVPIFDDVFLSVYPNSSLPSLEEGRLVYETDDTY--FQNSASEF 254
Query: 555 LDTGVKYVGGCCRTNADDMK 574
G + +GGCC T + ++
Sbjct: 255 RKQGARIIGGCCGTTPNHIR 274
>sp|Q5I597|BHMT1_BOVIN Betaine--homocysteine S-methyltransferase 1 OS=Bos taurus GN=BHMT
PE=2 SV=1
Length = 407
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 129/331 (38%), Gaps = 61/331 (18%)
Query: 259 NILSKDLQKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVI 318
N+ L+++N ++ + DGGF L E K P W + +AV
Sbjct: 8 NVKKGILERLNS----GEVIIGDGGFVFAL-----EKRGYVKAGP-WTPEAAVEHPEAVR 57
Query: 319 DTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDP 378
HR+++RAG +++ T T+ A SED+ + + YV E I+ ++ +
Sbjct: 58 QLHREFLRAGSNVMQTFTFYA-----------SEDK----LENRGNYVAEKISGQKVNEA 102
Query: 379 AI-ASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLA 437
A +R V G A + G Y+ + E+ + ++E ++ +D L
Sbjct: 103 ACDIARQVADEGD-----ALVAGGVSQTPSYLSCKSETEVKKVFQQQLEVFVKKNVDFLI 157
Query: 438 IETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 497
E EEA+ E +K K + C + H G A + A
Sbjct: 158 AEYFEHVEEAVWAVEALK--ASGKPVAATMCIGPEGDLHSVTPGECAVRLVK---AGASI 212
Query: 498 VGVNCLAPHY-----------VESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVP- 545
VGVNC H+ ++ L +AG L+ P + T D G++ +++ P
Sbjct: 213 VGVNC---HFDPTISLQTVKLMKEGLEAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEFPF 269
Query: 546 ----------SVDTYVPRWLDTGVKYVGGCC 566
+ Y + GV+Y+GGCC
Sbjct: 270 GLEPRVATRWDIQKYAREAYNLGVRYIGGCC 300
>sp|O35490|BHMT1_MOUSE Betaine--homocysteine S-methyltransferase 1 OS=Mus musculus GN=Bhmt
PE=2 SV=1
Length = 407
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 128/328 (39%), Gaps = 61/328 (18%)
Query: 266 QKINEFILE----NKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTH 321
+K + ILE ++ + DGGF L E K P W + +AV H
Sbjct: 7 KKAKKGILERLNAGEVVIGDGGFVFAL-----EKRGYVKAGP-WTPEAAVEHPEAVRQLH 60
Query: 322 RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI- 380
R+++RAG +++ T T+ A SED+ + + YV E I+ ++ + A
Sbjct: 61 REFLRAGSNVMQTFTFYA-----------SEDK----LENRGNYVAEKISGQKVNEAACD 105
Query: 381 ASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIET 440
+R V G A + G Y+ + E+ R ++E ++ +D L E
Sbjct: 106 IARQVADEGD-----ALVAGGVSQTPSYLSCKSEVEVKKIFRQQLEVFMKKNVDFLIAEY 160
Query: 441 LPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 500
EEA+ E +K K + C + HG G A + A VGV
Sbjct: 161 FEHVEEAVWAVEALKA--SGKPVAATMCIGPEGDLHGVPPGECAVRLVK---AGASIVGV 215
Query: 501 NCLAPHYVESL-----------LTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVP---- 545
NC H+ S+ L +A L+ P + T D G++ +++ P
Sbjct: 216 NC---HFDPSVSLQTVKLMKEGLEAARLKAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLE 272
Query: 546 -------SVDTYVPRWLDTGVKYVGGCC 566
+ Y + GV+Y+GGCC
Sbjct: 273 PRVATRWDIQKYAREAYNLGVRYIGGCC 300
>sp|Q5XGM3|BHMT1_XENLA Betaine--homocysteine S-methyltransferase 1 OS=Xenopus laevis
GN=bhmt PE=2 SV=1
Length = 403
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 125/309 (40%), Gaps = 57/309 (18%)
Query: 281 DGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQAS 340
DGGF L K K P W + +AV HR+++RAG +++ T T+ A
Sbjct: 23 DGGFVFALEK-----RGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGANVMQTFTFYA- 75
Query: 341 VEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI-ASRHVRVAGSLGSYGAFLH 399
S+D+ + + YV E I+ ++ + A +R V G A +
Sbjct: 76 ----------SDDK----LENRGNYVAEKISGQKVNEVACDIAREVANEGD-----ALVA 116
Query: 400 DGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPG 459
G Y+ + E+ R +++ I+ +D L E EEA+ E++KE
Sbjct: 117 GGVSQTPSYLSCKSEVEVKGIFRKQLDVFIKKNVDFLIAEYFEHVEEAVWAVEVLKE--S 174
Query: 460 LKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHY-----------V 508
K + C + +G G A + AK A + VGVNC H+ +
Sbjct: 175 GKPVAATLCIGPEGDLNGVSPGECAVRL-AKAGASV--VGVNC---HFDPMTCVATVKLM 228
Query: 509 ESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSV--DTYVPRW---------LDT 557
+ L +A L+ P + T D G++ +++ P V RW D
Sbjct: 229 KEGLVAAKVKAHLMTQPLAYHTPDCGKQGFIDLPEFPFALEPRIVTRWDIHKYARAAYDL 288
Query: 558 GVKYVGGCC 566
GV+Y+GGCC
Sbjct: 289 GVRYIGGCC 297
>sp|Q5M8Z0|BHMT1_XENTR Betaine--homocysteine S-methyltransferase 1 OS=Xenopus tropicalis
GN=bhmt PE=2 SV=1
Length = 403
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 124/304 (40%), Gaps = 47/304 (15%)
Query: 281 DGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQAS 340
DGGF L K K P W + +AV HR+++RAG +++ T T+ A
Sbjct: 23 DGGFVFALEK-----RGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGANVMQTFTFYA- 75
Query: 341 VEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI-ASRHVRVAGSLGSYGAFLH 399
S+D+ + + YV + I+ ++ + A +R V G A +
Sbjct: 76 ----------SDDK----LENRGNYVAKKISGQKVNEAACDIAREVANEGD-----ALVA 116
Query: 400 DGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPG 459
G Y+ + E+ R +++ I+ +D L E EEA+ E++KE
Sbjct: 117 GGVSQTPSYLSCKSEVEVKGIFRKQLDVFIKKNVDFLIAEYFEHVEEAVWAVEVLKE--S 174
Query: 460 LKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVG-----VNCLAP-HYVESLLT 513
K + C + +G G A + AK A +V V + C+A ++ L
Sbjct: 175 GKPVAATLCIGPQGDLNGVTPGECAVRL-AKAGASVVGVNCHFDPMTCIATVKLMKEGLV 233
Query: 514 SAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSV--DTYVPRW---------LDTGVKYV 562
+A L+ P + T D G++ +++ P V RW + GV+Y+
Sbjct: 234 AAKVKAHLMTQPLAYHTPDCGKQGFIDLPEFPFALEPRIVTRWDIHKYAREAYNLGVRYI 293
Query: 563 GGCC 566
GGCC
Sbjct: 294 GGCC 297
>sp|Q9I2Q2|METH_PSEAE Methionine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=metH PE=3 SV=1
Length = 1234
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 46/337 (13%)
Query: 273 LENKLYLIDGGFSSQL-SKHVGEDNVTEKDNPLWCSAFLHSN------RQAVIDT-HRDY 324
L ++ ++DGG + + S + E + + W S +N R VI + Y
Sbjct: 19 LRERILILDGGMGTMIQSYKLEEADYRGERFADWPSDVKGNNDLLLLSRPDVIQAIEKAY 78
Query: 325 VRAGCDIVTTNTYQASVEGFVQH--LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS 382
+ AG DI+ TNT+ A+ + L+ + +V+ R A + V +A E P
Sbjct: 79 LDAGADILETNTFNATQVSQADYGMQSLAYELNVEGARLA-RQVADAKTAETPDKPRF-- 135
Query: 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL- 441
VAG LG + + T EL++ + LI+GG DL+ IET+
Sbjct: 136 ----VAGVLGPTSRTCSISPDVNNPGYRNVTFDELVENYVEATRGLIEGGADLILIETIF 191
Query: 442 -PAQEEAMVLA------ELIKEYPGLKAWISFSCKDEK-HTCHGDKFGLIARDVYAKNPA 493
+A + A EL E P + IS + D T G V P
Sbjct: 192 DTLNAKAAIFAVQGVFEELGVELPIM---ISGTITDASGRTLSGQTTEAFWNSVRHARP- 247
Query: 494 QLVAVGVNC------LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSV 547
++VG+NC L P Y+E L T A D + PN+G G+ +S +
Sbjct: 248 --ISVGLNCALGAKELRP-YIEELSTKA--DTHVSAHPNAGLPNAFGEY----DESPAEM 298
Query: 548 DTYVPRWLDTG-VKYVGGCCRTNADDMKNVNQVPVKF 583
V + G + VGGCC T ++ + + K+
Sbjct: 299 AVVVEEFAAAGFLNIVGGCCGTTPAHIEAIAKAVAKY 335
>sp|O09171|BHMT1_RAT Betaine--homocysteine S-methyltransferase 1 OS=Rattus norvegicus
GN=Bhmt PE=1 SV=1
Length = 407
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 125/327 (38%), Gaps = 57/327 (17%)
Query: 263 KDLQKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHR 322
K + I E + ++ + DGGF L E K P W + +AV HR
Sbjct: 8 KAKRGILERLNAGEVVIGDGGFVFAL-----EKRGYVKAGP-WTPEAAVEHPEAVRQLHR 61
Query: 323 DYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI-A 381
+++RAG +++ T T+ A SED+ + + YV E I+ ++ + A
Sbjct: 62 EFLRAGSNVMQTFTFYA-----------SEDK----LENRGNYVAEKISGQKVNEAACDI 106
Query: 382 SRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL 441
+R V G A + G Y+ + E+ ++E ++ +D L E
Sbjct: 107 ARQVADEGD-----ALVAGGVSQTPSYLSCKSETEVKKIFHQQLEVFMKKNVDFLIAEYF 161
Query: 442 PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 501
EEA+ E +K K + C + HG G A + A VGVN
Sbjct: 162 EHVEEAVWAVEALKT--SGKPIAATMCIGPEGDLHGVSPGECAVRLVKAGAA---IVGVN 216
Query: 502 CLAPHY-----------VESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVP----- 545
C H+ ++ L +A L+ + T D G++ +++ P
Sbjct: 217 C---HFDPSTSLQTIKLMKEGLEAARLKAYLMSHALAYHTPDCGKQGFIDLPEFPFGLEP 273
Query: 546 ------SVDTYVPRWLDTGVKYVGGCC 566
+ Y + GV+Y+GGCC
Sbjct: 274 RVATRWDIQKYAREAYNLGVRYIGGCC 300
>sp|O33465|METH_PSEPU Methionine synthase (Fragment) OS=Pseudomonas putida GN=metH PE=3
SV=1
Length = 607
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 134/341 (39%), Gaps = 54/341 (15%)
Query: 273 LENKLYLIDGGFSSQL-SKHVGEDNVTEKDNPLWCS-------AFLHSNRQAVIDTHRDY 324
L+ ++ ++DGG + + S + E + W S L S + + Y
Sbjct: 15 LKERILILDGGMGTMIQSYRLEEHDYRGTRFADWPSDVKGNNDLLLLSRPDVIAAIEKAY 74
Query: 325 VRAGCDIVTTNTYQAS--------VEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKR 376
+ AG DI+ TNT+ A+ +E V L +V+ R A + V +A LE
Sbjct: 75 LDAGADILETNTFNATQISQADYGMESLVYEL------NVEGARIA-RQVADAKTLETPD 127
Query: 377 DPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLL 436
P VAG LG + + T EL++ + LI+GG DL+
Sbjct: 128 KPRF------VAGVLGPTSRTCSISPDVNDPGYRNVTFDELVENYIEATRGLIEGGADLI 181
Query: 437 AIE----TLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEK-HTCHGDKFGLIARDVYAK 490
IE TL A+ + ++ +E L IS + D T G V
Sbjct: 182 LIETIFDTLNAKAAIFAVQQVFEEDAVELPIMISGTITDASGRTLSGQTTEAFWNSVRHA 241
Query: 491 NPAQLVAVGVNC------LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSV 544
P ++VG+NC L P Y+E L T A D + PN+G G+ D
Sbjct: 242 KP---ISVGLNCALGAKDLRP-YLEELSTKA--DTHVSAHPNAGLPNAFGEY-----DET 290
Query: 545 PS-VDTYVPRWLDTG-VKYVGGCCRTNADDMKNVNQVPVKF 583
P+ + V + +G + +GGC T ++ + + K+
Sbjct: 291 PAEMAAVVEEFAASGFLNIIGGCSGTTPGHIQAIAEAVAKY 331
>sp|Q93088|BHMT1_HUMAN Betaine--homocysteine S-methyltransferase 1 OS=Homo sapiens GN=BHMT
PE=1 SV=2
Length = 406
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 125/328 (38%), Gaps = 61/328 (18%)
Query: 266 QKINEFILE----NKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTH 321
+K + ILE ++ + DGGF L E K P W + +AV H
Sbjct: 7 KKAKKGILERLNAGEIVIGDGGFVFAL-----EKRGYVKAGP-WTPEAAVEHPEAVRQLH 60
Query: 322 RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI- 380
R+++RAG +++ T T+ A SED+ + + YV E I+ +E + A
Sbjct: 61 REFLRAGSNVMQTFTFYA-----------SEDK----LENRGNYVLEKISGQEVNEAACD 105
Query: 381 ASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIET 440
+R V G A + G Y+ + E+ ++E ++ +D L E
Sbjct: 106 IARQVADEGD-----ALVAGGVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEY 160
Query: 441 LPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 500
EEA+ E + K + C + HG G A + A +GV
Sbjct: 161 FEHVEEAVWAVETL--IASGKPVAATMCIGPEGDLHGVPPGECAVRLVK---AGASIIGV 215
Query: 501 NCLAPHYVESL-----------LTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVP---- 545
NC H+ ++ L +A L+ P + T D ++ +++ P
Sbjct: 216 NC---HFDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLE 272
Query: 546 -------SVDTYVPRWLDTGVKYVGGCC 566
+ Y + GV+Y+GGCC
Sbjct: 273 PRVATRWDIQKYAREAYNLGVRYIGGCC 300
>sp|Q55786|METH_SYNY3 Methionine synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=metH PE=3 SV=1
Length = 1195
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 119/292 (40%), Gaps = 46/292 (15%)
Query: 306 CSAFL-HSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSE----DQSVQLIR 360
C+ +L H+ +AV HR + AG D+V T+T+ + L L+E DQS L
Sbjct: 45 CNEYLVHTKPEAVATVHRAFYEAGADVVETDTFGGT------PLVLAEYDLADQSYYL-- 96
Query: 361 DAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDY 420
+A + + + VAGS+G G ++D + L D
Sbjct: 97 ---NKAAAELAKAVAAEFSTPEKPRFVAGSMGPGTKLPTLG------HVDYDS---LKDA 144
Query: 421 HRPRIEALIQGGIDLLAIET----------LPAQEEAMVLAELIKEYPGLKAWISFSCKD 470
+ ++ L GG+DLL +ET L A E+ V AE P + +S + +
Sbjct: 145 YVVQVRGLYDGGVDLLLVETCQDVLQIKAALNAIEQ--VFAEKGDRLPLM---VSVTMET 199
Query: 471 EKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGRDVPLL--CCPNS 527
G + +A + P + +G+NC P ++ + P + C PN+
Sbjct: 200 MGTMLVGTE---MAAALAILEPYPIDILGLNCATGPDLMKEHVKYLSEHSPFVVSCIPNA 256
Query: 528 GETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQV 579
G + G + + + + + D GV+ +GGCC T D +K + +
Sbjct: 257 GLPENVGGQAFYRLTPMELQMSLMHFIEDLGVQVIGGCCGTRPDHIKALADI 308
>sp|Q95332|BHMT1_PIG Betaine--homocysteine S-methyltransferase 1 (Fragment) OS=Sus
scrofa GN=BHMT PE=1 SV=3
Length = 278
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 116/295 (39%), Gaps = 46/295 (15%)
Query: 263 KDLQKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHR 322
K + I E + ++ + DGGF L K K P W + +AV HR
Sbjct: 8 KAKKGILERLNSGEVVIGDGGFVFALEK-----RGYVKAGP-WTPEAAVEHPEAVRQLHR 61
Query: 323 DYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAI-A 381
+++RAG +++ T T+ A SED+ + + YV E I+ ++ + A
Sbjct: 62 EFLRAGSNVMQTFTFYA-----------SEDK----LENRGNYVAEKISGQKVNEAACDI 106
Query: 382 SRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL 441
+R V G A + G Y+ + E+ R ++E ++ +D L E
Sbjct: 107 ARQVADEGD-----ALVAGGVSQTPSYLSCKSETEVKKVFRQQLEVFMKKNVDFLIAEYF 161
Query: 442 PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 501
EEA+ E +K K + C + HG G A + A VGVN
Sbjct: 162 EHVEEAVWAVEALKASG--KPVAATMCIGPEGDLHGVTPGQCAVRLVK---AGASIVGVN 216
Query: 502 CLAPHY-----------VESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVP 545
C H+ ++ L +AG L+ P + T D G++ +++ P
Sbjct: 217 C---HFDPTISLQTVKLMKEGLQAAGLKAHLMSQPLAYHTPDCGKQGFIDLPEFP 268
>sp|Q5RFG2|BHMT1_PONAB Betaine--homocysteine S-methyltransferase 1 OS=Pongo abelii GN=BHMT
PE=2 SV=1
Length = 406
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 127/331 (38%), Gaps = 58/331 (17%)
Query: 260 ILSKDLQK-INEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVI 318
++ K +K I E + ++ + DGGF L E K P W + +AV
Sbjct: 4 VVGKKAKKGILERLNAGEIVIGDGGFVFAL-----EKRGYVKAGP-WTPEAAVEHPEAVR 57
Query: 319 DTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDP 378
HR+++RAG +++ T T+ A SED+ + + YV E I+ ++ +
Sbjct: 58 QLHREFLRAGSNVMQTFTFYA-----------SEDK----LENRGNYVLEKISGQKVNEA 102
Query: 379 AI-ASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLA 437
A +R V G A + G Y+ + E+ ++E ++ +D L
Sbjct: 103 ACDIARQVADEGD-----ALVAGGVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLI 157
Query: 438 IETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 497
E EEA+ E + K + C + HG G A + A
Sbjct: 158 AEYFEHVEEAVWAVETL--IASGKPVAATMCIGPEGDLHGVPPGECAVRLVK---AGASI 212
Query: 498 VGVNCLAPHYVESL-----------LTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVP- 545
+GVNC H+ ++ L +A L+ P + T D ++ +++ P
Sbjct: 213 IGVNC---HFDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQGFIDLPEFPF 269
Query: 546 ----------SVDTYVPRWLDTGVKYVGGCC 566
+ Y + G++Y+GGCC
Sbjct: 270 GLEPRVATRWDIQKYAREAYNMGIRYIGGCC 300
>sp|P37586|METH_SALTY Methionine synthase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=metH PE=3 SV=3
Length = 1227
Score = 40.0 bits (92), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 125/319 (39%), Gaps = 40/319 (12%)
Query: 273 LENKLYLIDGGFSSQL-SKHVGEDNVTEKDNPLW-CSA------FLHSNRQAVIDTHRDY 324
L ++ ++DGG + + S + E++ + W C + S + + H Y
Sbjct: 12 LNERILVLDGGMGTMIQSYRLHEEDFRGERFADWPCDLKGNNDLLVLSKPEVIAAIHNAY 71
Query: 325 VRAGCDIVTTNTYQASVEGFVQHL--GLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS 382
AG DI+ TNT+ ++ + LS + + + A E A R P
Sbjct: 72 FEAGADIIETNTFNSTTIAMADYRMESLSAEINYAAAKLARACADEWTA----RTP---E 124
Query: 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL- 441
+ VAG LG + + T +L+ +R +AL++GG DL+ IET+
Sbjct: 125 KPRFVAGVLGPTNRTASISPDVNDPAFRNITFDQLVAAYRESTKALVEGGADLILIETVF 184
Query: 442 -PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKN--PAQLVAV 498
+A V A + +E+ L + G + + + A+ +
Sbjct: 185 DTLNAKAAVFA-VKEEFEALGVDLPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTF 243
Query: 499 GVNC-LAP----HYVESLLTSAGRDV---PLLCCPNSGETFDPGQRIWMNKDSVPSVDTY 550
G+NC L P YV+ L A V P PN+ +D ++ D++
Sbjct: 244 GLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYD------LDADTMAK---Q 294
Query: 551 VPRWLDTG-VKYVGGCCRT 568
+ W + G + VGGCC T
Sbjct: 295 IREWAEAGFLNIVGGCCGT 313
>sp|Q49775|METH_MYCLE Methionine synthase OS=Mycobacterium leprae (strain TN) GN=metH
PE=3 SV=3
Length = 1206
Score = 39.7 bits (91), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 40/318 (12%)
Query: 273 LENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDT-HRDYVRAGCDI 331
L ++ + DG +QL E + + C+ L+ R V++T HR Y AG D+
Sbjct: 19 LAQRVMVGDGAMGTQLQD--AELTLDDFRGLEGCNEILNETRPDVLETIHRRYFEAGADL 76
Query: 332 VTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVR-VAGS 390
V TNT+ ++ L + IRD + + + D H R V GS
Sbjct: 77 VETNTFGCNLS------NLGDYDIADKIRDLSQ--RGTVIARRVADELTTPDHKRYVLGS 128
Query: 391 LGSYGAFLHDG-SEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLP--AQEEA 447
+G G +EYR D+ T L ++ GG D + +ET Q +A
Sbjct: 129 MGPGTKLPTLGHTEYR-VVRDAYTESAL---------GMLDGGADAVLVETCQDLLQLKA 178
Query: 448 MVLAE---LIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-L 503
VL + + + ++ + + G + G + A P + +G+NC
Sbjct: 179 AVLGSRRAMTQAGRHIPVFVHVTVETTGTMLLGSEIGAA---LAAVEPLGVDMIGLNCAT 235
Query: 504 APHYVESLLT--SAGRDVPLLCCPNSGETF--DPGQRIWMNKDSVP-SVDTYVPRWLDTG 558
P + L S +P+ PN+G G + D + ++ ++ + G
Sbjct: 236 GPAEMSEHLRHLSKHARIPVSVMPNAGLPVLGAKGAEYPLQPDELAEALAGFIAEF---G 292
Query: 559 VKYVGGCCRTNADDMKNV 576
+ VGGCC T D ++ V
Sbjct: 293 LSLVGGCCGTTPDHIREV 310
>sp|P13009|METH_ECOLI Methionine synthase OS=Escherichia coli (strain K12) GN=metH PE=1
SV=5
Length = 1227
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 119/318 (37%), Gaps = 38/318 (11%)
Query: 273 LENKLYLIDGGFSSQL-SKHVGEDNVTEKDNPLW-CSA------FLHSNRQAVIDTHRDY 324
L ++ ++DGG + + S + E + + W C + S + + H Y
Sbjct: 12 LNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAIHNAY 71
Query: 325 VRAGCDIVTTNTYQASVEGFV--QHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS 382
AG DI+ TNT+ ++ Q LS + + + A E A R P
Sbjct: 72 FEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTA----RTP---E 124
Query: 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLP 442
+ VAG LG + + T L+ +R +AL++GG DL+ IET+
Sbjct: 125 KPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVF 184
Query: 443 AQEEAMVLAELIK-EYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKN--PAQLVAVG 499
A +K E+ L + G + + + A+ + G
Sbjct: 185 DTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFG 244
Query: 500 VNC-LAP----HYVESLLTSAGRDV---PLLCCPNSGETFDPGQRIWMNKDSVPSVDTYV 551
+NC L P YV+ L A V P PN+ +D ++ D++ +
Sbjct: 245 LNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYD------LDADTMAK---QI 295
Query: 552 PRWLDTG-VKYVGGCCRT 568
W G + VGGCC T
Sbjct: 296 REWAQAGFLNIVGGCCGT 313
>sp|O33259|METH_MYCTU Methionine synthase OS=Mycobacterium tuberculosis GN=metH PE=3 SV=1
Length = 1192
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 119/317 (37%), Gaps = 36/317 (11%)
Query: 272 ILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDT-HRDYVRAGCD 330
+L ++ + DG +QL + + + C+ L+ R V++T HR+Y AG D
Sbjct: 16 VLSQRVMVGDGAMGTQL--QAADLTLDDFRGLEGCNEILNETRPDVLETIHRNYFEAGAD 73
Query: 331 IVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGS 390
V TNT+ ++ L + IRD + AIA + R V GS
Sbjct: 74 AVETNTFGCNLS------NLGDYDIADRIRD-LSQKGTAIARRVADELGSPDRKRYVLGS 126
Query: 391 LGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLP--AQEEAM 448
+G G D+ T L ++ GG D + +ET Q +A
Sbjct: 127 MGPGTKLPTLGHTEYAVIRDAYTEAAL---------GMLDGGADAILVETCQDLLQLKAA 177
Query: 449 VLAE---LIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-LA 504
VL + + + + + + G + G + A P + +G+NC
Sbjct: 178 VLGSRRAMTRAGRHIPVFAHVTVETTGTMLLGSEIGAA---LTAVEPLGVDMIGLNCATG 234
Query: 505 PHYVESLLTSAGRD--VPLLCCPNSGETF---DPGQRIWMNKDSVPSVDTYVPRWLDTGV 559
P + L R +P+ PN+G + + + ++ ++ + G+
Sbjct: 235 PAEMSEHLRHLSRHARIPVSVMPNAGLPVLGAKGAEYPLLPDELAEALAGFIAEF---GL 291
Query: 560 KYVGGCCRTNADDMKNV 576
VGGCC T ++ V
Sbjct: 292 SLVGGCCGTTPAHIREV 308
>sp|A7Z1F3|Y430_BACA2 UPF0317 protein RBAM_004300 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=RBAM_004300 PE=3 SV=1
Length = 264
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 512 LTSAGRDVPLLCCPNSGETFD-PGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNA 570
+T AG VP + P + D P RI+ + V P W D V ++ GC +
Sbjct: 65 VTDAGSPVPAIAAPGADIRTDFPKYRIYRHGVLTEEVTDITPYWKDDDVGFLIGCSFSFE 124
Query: 571 DDMKNVNQVPVKFSITPESLTNARDKFNIPRFRISGHLDSTECSVVRPFTGEIVIEQTEL 630
+ N +P++ + + N+P ++ +C PF+G++V+ +
Sbjct: 125 QALIN-QHIPIR---------HIDEGVNVPMYKT-----DIDCVPAGPFSGKMVVSMRPI 169
Query: 631 P 631
P
Sbjct: 170 P 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,460,964
Number of Sequences: 539616
Number of extensions: 11657807
Number of successful extensions: 28925
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 28721
Number of HSP's gapped (non-prelim): 110
length of query: 698
length of database: 191,569,459
effective HSP length: 125
effective length of query: 573
effective length of database: 124,117,459
effective search space: 71119304007
effective search space used: 71119304007
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)