Query psy13907
Match_columns 698
No_of_seqs 431 out of 2734
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:31:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0646 MetH Methionine syntha 100.0 3.9E-75 8.5E-80 593.8 30.1 294 268-582 8-311 (311)
2 PRK09490 metH B12-dependent me 100.0 2.6E-74 5.6E-79 691.5 36.9 372 267-672 10-403 (1229)
3 TIGR02082 metH 5-methyltetrahy 100.0 3.1E-71 6.6E-76 667.6 36.1 361 274-672 2-387 (1178)
4 PLN02489 homocysteine S-methyl 100.0 9.9E-71 2.1E-75 591.7 35.6 314 261-582 5-333 (335)
5 PRK09485 mmuM homocysteine met 100.0 1.3E-69 2.8E-74 577.5 33.8 297 268-581 4-303 (304)
6 KOG1579|consensus 100.0 3.9E-69 8.4E-74 555.5 30.5 297 273-584 15-316 (317)
7 COG2040 MHT1 Homocysteine/sele 100.0 1.2E-65 2.5E-70 522.1 27.0 291 272-583 5-299 (300)
8 PRK07534 methionine synthase I 100.0 2.4E-64 5.2E-69 541.7 34.0 302 268-597 5-311 (336)
9 PF02574 S-methyl_trans: Homoc 100.0 1.4E-65 3E-70 547.8 9.0 288 277-582 1-305 (305)
10 PRK08645 bifunctional homocyst 100.0 9.9E-59 2.1E-63 535.5 31.5 285 268-586 4-291 (612)
11 COG0646 MetH Methionine syntha 100.0 3.7E-40 8.1E-45 337.2 22.8 220 2-291 78-302 (311)
12 PLN02489 homocysteine S-methyl 100.0 1.5E-38 3.4E-43 342.3 26.9 235 1-291 79-324 (335)
13 PRK09485 mmuM homocysteine met 100.0 1E-37 2.2E-42 332.6 27.0 225 1-291 70-295 (304)
14 PRK09490 metH B12-dependent me 100.0 1E-36 2.2E-41 367.3 25.0 270 1-336 89-405 (1229)
15 PRK07534 methionine synthase I 100.0 1.2E-35 2.5E-40 319.7 25.4 217 2-291 70-286 (336)
16 KOG1579|consensus 100.0 1.4E-35 3.1E-40 306.7 23.7 225 1-290 77-304 (317)
17 TIGR02082 metH 5-methyltetrahy 100.0 2.1E-35 4.5E-40 357.4 24.9 269 1-336 74-389 (1178)
18 PF02574 S-methyl_trans: Homoc 100.0 4.2E-36 9.2E-41 320.8 9.1 229 1-291 65-296 (305)
19 COG2040 MHT1 Homocysteine/sele 100.0 3.3E-33 7.2E-38 285.0 22.3 221 1-290 67-288 (300)
20 KOG2717|consensus 100.0 9.3E-36 2E-40 292.0 2.2 107 592-698 169-275 (313)
21 PRK08645 bifunctional homocyst 100.0 4.2E-33 9E-38 322.5 24.1 212 1-291 67-278 (612)
22 PF03643 Vps26: Vacuolar prote 99.8 6E-20 1.3E-24 192.0 -1.3 98 600-697 164-263 (275)
23 KOG2717|consensus 98.1 1E-06 2.2E-11 88.2 0.5 76 196-274 67-143 (313)
24 COG1410 MetH Methionine syntha 97.7 1.8E-05 3.9E-10 91.0 3.2 77 584-672 2-79 (842)
25 PF03437 BtpA: BtpA family; I 94.8 1.3 2.8E-05 46.6 16.4 32 413-444 23-54 (254)
26 cd00408 DHDPS-like Dihydrodipi 92.8 5.4 0.00012 42.2 17.1 184 73-325 14-218 (281)
27 cd00952 CHBPH_aldolase Trans-o 92.7 6 0.00013 42.8 17.4 181 81-324 29-230 (309)
28 PF00701 DHDPS: Dihydrodipicol 92.5 2.7 5.8E-05 44.8 14.3 181 81-325 22-222 (289)
29 TIGR03249 KdgD 5-dehydro-4-deo 92.3 6.6 0.00014 42.1 17.0 185 73-328 22-228 (296)
30 TIGR00683 nanA N-acetylneurami 92.1 6.3 0.00014 42.2 16.5 182 81-325 21-222 (290)
31 cd00945 Aldolase_Class_I Class 91.9 7.2 0.00016 38.2 15.7 139 419-581 13-170 (201)
32 PRK03620 5-dehydro-4-deoxygluc 91.2 11 0.00023 40.7 17.2 125 48-234 11-143 (303)
33 cd00950 DHDPS Dihydrodipicolin 91.2 11 0.00025 39.8 17.3 185 73-325 17-221 (284)
34 cd00951 KDGDH 5-dehydro-4-deox 91.0 11 0.00024 40.3 17.0 112 73-234 17-136 (289)
35 PRK03170 dihydrodipicolinate s 90.6 13 0.00029 39.5 17.2 179 81-325 22-222 (292)
36 TIGR00674 dapA dihydrodipicoli 90.6 13 0.00029 39.5 17.1 110 73-231 15-132 (285)
37 COG0329 DapA Dihydrodipicolina 89.6 15 0.00032 39.6 16.5 108 81-233 25-140 (299)
38 TIGR00259 thylakoid_BtpA membr 88.8 17 0.00037 38.4 15.8 34 411-444 20-53 (257)
39 TIGR00222 panB 3-methyl-2-oxob 88.6 8 0.00017 40.9 13.2 97 418-521 92-198 (263)
40 PRK04147 N-acetylneuraminate l 88.6 16 0.00036 39.0 16.0 110 73-231 20-138 (293)
41 cd00954 NAL N-Acetylneuraminic 88.0 24 0.00052 37.6 16.8 182 81-325 21-223 (288)
42 cd00377 ICL_PEPM Members of th 87.9 4.5 9.8E-05 42.2 10.8 42 421-466 162-203 (243)
43 PRK13384 delta-aminolevulinic 87.4 24 0.00051 38.2 15.8 94 19-130 99-196 (322)
44 TIGR01037 pyrD_sub1_fam dihydr 87.2 9.7 0.00021 40.8 13.2 74 121-231 90-165 (300)
45 cd00739 DHPS DHPS subgroup of 87.0 13 0.00029 39.2 13.8 53 223-285 120-176 (257)
46 PF00490 ALAD: Delta-aminolevu 86.3 18 0.00039 39.2 14.3 97 19-131 97-197 (324)
47 TIGR02313 HpaI-NOT-DapA 2,4-di 85.5 42 0.00091 36.0 17.0 184 73-325 17-223 (294)
48 PRK15063 isocitrate lyase; Pro 85.5 31 0.00068 38.9 16.2 133 423-562 165-343 (428)
49 cd04740 DHOD_1B_like Dihydroor 85.2 12 0.00027 39.8 12.8 73 120-229 88-160 (296)
50 cd00377 ICL_PEPM Members of th 85.1 22 0.00047 37.2 14.1 103 421-528 86-206 (243)
51 PRK03620 5-dehydro-4-deoxygluc 84.8 39 0.00085 36.4 16.4 140 411-580 24-180 (303)
52 cd04823 ALAD_PBGS_aspartate_ri 84.1 41 0.0009 36.4 15.6 94 19-130 94-191 (320)
53 cd06556 ICL_KPHMT Members of t 82.9 14 0.0003 38.6 11.6 81 385-478 126-206 (240)
54 TIGR03249 KdgD 5-dehydro-4-deo 82.8 55 0.0012 35.0 16.5 141 411-580 22-178 (296)
55 cd06557 KPHMT-like Ketopantoat 82.8 20 0.00043 37.8 12.7 100 46-166 73-181 (254)
56 cd00384 ALAD_PBGS Porphobilino 82.7 54 0.0012 35.4 15.8 94 19-130 89-186 (314)
57 cd00408 DHDPS-like Dihydrodipi 82.3 60 0.0013 34.2 16.4 144 411-580 14-173 (281)
58 PF03437 BtpA: BtpA family; I 81.4 7.7 0.00017 40.9 9.0 32 75-106 23-54 (254)
59 PF00490 ALAD: Delta-aminolevu 81.4 38 0.00082 36.8 14.2 185 358-562 98-312 (324)
60 PRK09283 delta-aminolevulinic 81.3 62 0.0013 35.2 15.8 93 19-129 97-193 (323)
61 PRK05581 ribulose-phosphate 3- 81.3 27 0.00059 35.2 12.9 50 421-470 18-72 (220)
62 cd06557 KPHMT-like Ketopantoat 81.0 27 0.00058 36.9 12.9 96 421-522 93-197 (254)
63 cd04823 ALAD_PBGS_aspartate_ri 80.9 69 0.0015 34.8 15.9 223 315-562 54-307 (320)
64 TIGR00737 nifR3_yhdG putative 80.8 8.8 0.00019 41.6 9.6 108 92-233 29-141 (319)
65 TIGR01769 GGGP geranylgeranylg 80.6 20 0.00044 36.5 11.5 146 419-580 11-175 (205)
66 PRK05692 hydroxymethylglutaryl 80.5 40 0.00086 36.1 14.3 130 325-488 89-222 (287)
67 cd02810 DHOD_DHPD_FMN Dihydroo 80.4 12 0.00026 39.7 10.3 74 120-231 97-170 (289)
68 PRK00865 glutamate racemase; P 80.2 21 0.00045 37.6 11.9 137 410-566 45-186 (261)
69 TIGR00683 nanA N-acetylneurami 80.1 22 0.00047 38.1 12.2 144 411-580 17-178 (290)
70 cd00384 ALAD_PBGS Porphobilino 79.9 81 0.0018 34.1 16.0 185 357-562 89-302 (314)
71 TIGR01037 pyrD_sub1_fam dihydr 79.7 79 0.0017 33.8 16.4 117 424-562 27-186 (300)
72 cd08205 RuBisCO_IV_RLP Ribulos 79.3 36 0.00078 37.8 13.9 21 313-333 144-164 (367)
73 PRK00311 panB 3-methyl-2-oxobu 78.9 19 0.0004 38.3 10.9 96 421-522 96-200 (264)
74 PRK10415 tRNA-dihydrouridine s 78.8 26 0.00057 38.1 12.5 111 431-561 32-165 (321)
75 COG0113 HemB Delta-aminolevuli 78.7 1E+02 0.0022 33.4 16.0 94 19-129 101-198 (330)
76 PRK13384 delta-aminolevulinic 78.6 93 0.002 33.8 15.9 221 315-562 61-311 (322)
77 cd00465 URO-D_CIMS_like The UR 78.4 73 0.0016 33.8 15.7 144 414-581 139-305 (306)
78 TIGR00612 ispG_gcpE 1-hydroxy- 78.1 33 0.00071 37.5 12.5 148 418-582 33-190 (346)
79 PRK07259 dihydroorotate dehydr 78.0 40 0.00087 36.1 13.5 74 121-231 91-165 (301)
80 PRK09283 delta-aminolevulinic 77.9 1E+02 0.0022 33.5 16.1 220 316-562 60-310 (323)
81 cd00951 KDGDH 5-dehydro-4-deox 77.6 28 0.00061 37.1 12.1 140 411-580 17-173 (289)
82 CHL00200 trpA tryptophan synth 77.5 44 0.00095 35.4 13.3 125 419-582 29-169 (263)
83 COG0821 gcpE 1-hydroxy-2-methy 77.1 18 0.0004 39.3 10.2 82 419-504 36-134 (361)
84 COG0113 HemB Delta-aminolevuli 76.9 86 0.0019 33.9 14.9 222 317-562 63-315 (330)
85 PRK00311 panB 3-methyl-2-oxobu 76.8 39 0.00084 35.9 12.6 99 47-166 77-184 (264)
86 PRK15452 putative protease; Pr 76.7 82 0.0018 36.0 16.0 133 423-580 14-156 (443)
87 TIGR01496 DHPS dihydropteroate 76.2 63 0.0014 34.0 14.1 57 62-124 10-78 (257)
88 PLN02417 dihydrodipicolinate s 76.1 41 0.00088 35.8 12.8 173 81-324 22-216 (280)
89 cd08210 RLP_RrRLP Ribulose bis 76.1 33 0.00072 38.1 12.4 128 82-233 142-287 (364)
90 PRK00366 ispG 4-hydroxy-3-meth 75.9 43 0.00094 36.9 12.8 147 418-581 41-198 (360)
91 KOG3063|consensus 75.8 0.68 1.5E-05 47.4 -0.8 67 630-696 201-269 (301)
92 cd02940 DHPD_FMN Dihydropyrimi 75.6 19 0.00041 38.7 10.2 76 121-229 99-174 (299)
93 COG0329 DapA Dihydrodipicolina 75.0 55 0.0012 35.3 13.5 105 411-528 21-140 (299)
94 PF00701 DHDPS: Dihydrodipicol 74.8 31 0.00067 36.7 11.5 100 419-527 22-136 (289)
95 PRK14042 pyruvate carboxylase 74.7 1.3E+02 0.0027 35.9 17.2 101 415-526 95-205 (596)
96 cd04824 eu_ALAD_PBGS_cysteine_ 74.7 1.3E+02 0.0029 32.6 15.9 185 358-562 93-308 (320)
97 cd08205 RuBisCO_IV_RLP Ribulos 74.4 70 0.0015 35.6 14.5 149 411-579 142-307 (367)
98 PRK11613 folP dihydropteroate 74.1 64 0.0014 34.6 13.5 53 223-285 133-189 (282)
99 KOG2335|consensus 73.8 11 0.00023 41.5 7.5 40 121-170 73-112 (358)
100 cd00953 KDG_aldolase KDG (2-ke 73.5 1.3E+02 0.0028 31.9 17.4 76 73-162 16-97 (279)
101 TIGR02320 PEP_mutase phosphoen 73.1 94 0.002 33.4 14.5 102 421-525 94-218 (285)
102 PRK07565 dihydroorotate dehydr 73.0 24 0.00052 38.5 10.4 54 105-167 85-138 (334)
103 cd00952 CHBPH_aldolase Trans-o 73.0 44 0.00095 36.1 12.2 104 411-527 25-144 (309)
104 cd07937 DRE_TIM_PC_TC_5S Pyruv 72.4 1.4E+02 0.003 31.7 16.2 99 423-526 95-200 (275)
105 PF01729 QRPTase_C: Quinolinat 72.1 13 0.00028 36.7 7.2 65 86-164 92-156 (169)
106 cd02801 DUS_like_FMN Dihydrour 71.7 47 0.001 33.7 11.6 110 432-562 23-155 (231)
107 cd04741 DHOD_1A_like Dihydroor 71.7 18 0.00039 38.9 8.8 63 120-210 90-155 (294)
108 cd00950 DHDPS Dihydrodipicolin 71.6 52 0.0011 34.8 12.3 104 411-527 17-135 (284)
109 PRK05692 hydroxymethylglutaryl 71.5 95 0.0021 33.3 14.2 64 81-150 155-222 (287)
110 cd03174 DRE_TIM_metallolyase D 71.3 1.3E+02 0.0028 31.0 15.9 157 397-585 4-189 (265)
111 COG0434 SgcQ Predicted TIM-bar 71.3 32 0.00069 35.9 9.8 150 411-581 26-205 (263)
112 PF01207 Dus: Dihydrouridine s 71.1 15 0.00031 39.8 8.0 67 92-168 19-91 (309)
113 PRK11320 prpB 2-methylisocitra 70.6 13 0.00028 40.0 7.3 84 421-516 168-253 (292)
114 PLN02746 hydroxymethylglutaryl 70.4 89 0.0019 34.5 13.9 131 325-488 131-264 (347)
115 PRK09121 5-methyltetrahydropte 70.2 90 0.0019 34.3 14.0 147 76-235 151-313 (339)
116 TIGR00259 thylakoid_BtpA membr 69.7 24 0.00053 37.2 9.0 32 74-105 21-52 (257)
117 cd07943 DRE_TIM_HOA 4-hydroxy- 69.6 79 0.0017 33.2 13.0 96 425-527 91-194 (263)
118 cd02911 arch_FMN Archeal FMN-b 69.5 44 0.00095 34.7 10.8 108 88-234 42-150 (233)
119 cd04739 DHOD_like Dihydroorota 69.1 38 0.00082 36.9 10.7 38 120-166 98-135 (325)
120 cd02930 DCR_FMN 2,4-dienoyl-Co 68.5 58 0.0013 35.8 12.2 90 73-164 126-245 (353)
121 PRK05848 nicotinate-nucleotide 68.3 24 0.00051 37.7 8.7 65 85-164 193-258 (273)
122 PRK10550 tRNA-dihydrouridine s 68.1 44 0.00096 36.3 10.9 119 82-234 15-144 (312)
123 cd07947 DRE_TIM_Re_CS Clostrid 67.8 1.2E+02 0.0025 32.5 13.9 108 10-150 106-226 (279)
124 cd03312 CIMS_N_terminal_like C 67.7 1.2E+02 0.0027 33.5 14.5 133 76-234 177-323 (360)
125 PLN02591 tryptophan synthase 67.6 1.7E+02 0.0036 30.8 15.4 156 419-582 16-214 (250)
126 TIGR00674 dapA dihydrodipicoli 67.3 61 0.0013 34.4 11.7 143 411-580 15-174 (285)
127 cd03311 CIMS_C_terminal_like C 67.1 1.4E+02 0.003 32.3 14.7 148 76-238 150-315 (332)
128 TIGR02317 prpB methylisocitrat 66.8 14 0.00031 39.5 6.7 84 421-516 163-248 (285)
129 TIGR01463 mtaA_cmuA methyltran 66.7 1.1E+02 0.0024 33.2 13.8 25 424-448 247-271 (340)
130 PRK02506 dihydroorotate dehydr 66.7 29 0.00063 37.5 9.2 64 120-210 91-155 (310)
131 PRK09250 fructose-bisphosphate 66.6 50 0.0011 36.4 10.8 135 424-575 96-247 (348)
132 PRK08508 biotin synthase; Prov 66.5 1.4E+02 0.003 31.8 14.1 134 74-236 40-196 (279)
133 PRK06843 inosine 5-monophospha 66.5 50 0.0011 37.2 11.1 66 83-162 154-221 (404)
134 cd00423 Pterin_binding Pterin 66.4 1.1E+02 0.0024 32.0 13.3 54 223-286 120-177 (258)
135 cd00945 Aldolase_Class_I Class 65.9 1.3E+02 0.0029 29.1 17.1 144 313-515 11-169 (201)
136 PRK06520 5-methyltetrahydropte 65.7 1.2E+02 0.0027 33.6 14.1 154 76-242 165-347 (368)
137 PRK07896 nicotinate-nucleotide 65.7 28 0.00061 37.4 8.6 64 86-164 211-275 (289)
138 PRK15452 putative protease; Pr 65.7 24 0.00051 40.3 8.5 74 85-164 14-97 (443)
139 TIGR00007 phosphoribosylformim 65.6 99 0.0022 31.5 12.5 143 413-579 29-187 (230)
140 PRK05286 dihydroorotate dehydr 65.6 80 0.0017 34.7 12.5 102 87-210 75-204 (344)
141 cd07947 DRE_TIM_Re_CS Clostrid 64.8 1.4E+02 0.0031 31.8 13.8 130 325-488 84-226 (279)
142 PRK01130 N-acetylmannosamine-6 64.6 42 0.00092 34.1 9.5 66 84-164 78-147 (221)
143 cd02810 DHOD_DHPD_FMN Dihydroo 63.8 95 0.0021 32.8 12.4 84 458-563 97-194 (289)
144 COG1646 Predicted phosphate-bi 63.7 1.4E+02 0.0031 31.1 12.8 78 125-248 16-97 (240)
145 COG2513 PrpB PEP phosphonomuta 63.7 9.2 0.0002 40.8 4.4 77 83-173 168-244 (289)
146 COG5016 Pyruvate/oxaloacetate 63.4 1.4E+02 0.0031 33.6 13.4 77 80-166 155-234 (472)
147 TIGR03217 4OH_2_O_val_ald 4-hy 63.3 1.9E+02 0.0041 31.7 14.8 156 397-583 9-184 (333)
148 PRK10415 tRNA-dihydrouridine s 63.3 42 0.00092 36.5 9.7 68 92-168 31-102 (321)
149 PRK11320 prpB 2-methylisocitra 63.0 17 0.00036 39.2 6.4 44 82-129 167-210 (292)
150 TIGR00222 panB 3-methyl-2-oxob 62.9 1.7E+02 0.0037 31.1 13.6 99 46-167 76-184 (263)
151 COG0042 tRNA-dihydrouridine sy 62.8 27 0.00058 38.1 8.0 111 94-236 34-149 (323)
152 PRK06852 aldolase; Validated 62.7 81 0.0018 34.2 11.5 123 423-563 63-206 (304)
153 cd04722 TIM_phosphate_binding 62.6 37 0.00079 32.6 8.3 78 81-166 12-94 (200)
154 PRK06252 methylcobalamin:coenz 62.4 1.9E+02 0.0042 31.2 14.7 43 541-583 290-336 (339)
155 TIGR00736 nifR3_rel_arch TIM-b 62.3 45 0.00098 34.7 9.2 78 121-234 67-145 (231)
156 cd03465 URO-D_like The URO-D _ 61.9 2.3E+02 0.0049 30.4 15.4 49 423-478 234-282 (330)
157 PLN02591 tryptophan synthase 61.9 2.1E+02 0.0046 30.1 15.6 21 314-334 15-35 (250)
158 PLN02746 hydroxymethylglutaryl 61.9 1.6E+02 0.0035 32.5 13.9 108 10-150 153-264 (347)
159 PRK12581 oxaloacetate decarbox 61.6 2.9E+02 0.0063 31.9 16.2 99 415-526 104-214 (468)
160 PF00478 IMPDH: IMP dehydrogen 61.5 26 0.00056 38.7 7.6 60 382-465 94-155 (352)
161 PLN02495 oxidoreductase, actin 60.9 1E+02 0.0022 34.6 12.2 74 82-165 128-217 (385)
162 TIGR00737 nifR3_yhdG putative 60.8 89 0.0019 33.8 11.7 112 430-561 29-163 (319)
163 cd00958 DhnA Class I fructose- 60.5 2E+02 0.0043 29.4 13.7 119 423-560 80-209 (235)
164 PRK06252 methylcobalamin:coenz 60.4 1.4E+02 0.0031 32.3 13.2 70 423-502 244-315 (339)
165 PRK05718 keto-hydroxyglutarate 60.2 1.7E+02 0.0038 29.9 12.9 121 421-581 29-154 (212)
166 PRK05458 guanosine 5'-monophos 60.1 1.1E+02 0.0024 33.4 12.1 68 84-166 99-177 (326)
167 cd00954 NAL N-Acetylneuraminic 59.9 1.1E+02 0.0025 32.4 12.1 104 411-527 17-137 (288)
168 TIGR01371 met_syn_B12ind 5-met 59.8 1.5E+02 0.0032 36.4 14.2 134 76-234 173-318 (750)
169 cd08210 RLP_RrRLP Ribulose bis 59.3 2.7E+02 0.0058 31.0 15.1 158 384-580 126-304 (364)
170 cd04734 OYE_like_3_FMN Old yel 59.2 2.4E+02 0.0052 30.9 14.8 24 411-438 224-248 (343)
171 TIGR00612 ispG_gcpE 1-hydroxy- 59.1 1.5E+02 0.0033 32.5 12.6 99 81-234 34-132 (346)
172 PRK03170 dihydrodipicolinate s 59.1 1.1E+02 0.0024 32.5 11.9 104 411-527 18-136 (292)
173 TIGR02319 CPEP_Pphonmut carbox 59.0 57 0.0012 35.2 9.5 45 82-130 166-210 (294)
174 TIGR01463 mtaA_cmuA methyltran 59.0 2.7E+02 0.0057 30.2 16.9 145 415-584 176-339 (340)
175 PRK04147 N-acetylneuraminate l 58.9 92 0.002 33.2 11.2 143 411-579 20-179 (293)
176 cd02803 OYE_like_FMN_family Ol 58.7 1.4E+02 0.0031 32.1 12.8 93 72-166 129-251 (327)
177 PRK00748 1-(5-phosphoribosyl)- 58.6 2.1E+02 0.0046 29.0 14.1 140 423-580 34-189 (233)
178 PLN02424 ketopantoate hydroxym 58.1 1.9E+02 0.004 31.9 13.2 139 46-210 151-307 (332)
179 PRK00366 ispG 4-hydroxy-3-meth 58.1 1.8E+02 0.0039 32.2 13.1 99 81-234 42-141 (360)
180 PRK08318 dihydropyrimidine deh 57.9 63 0.0014 36.4 10.2 68 120-210 98-166 (420)
181 COG0821 gcpE 1-hydroxy-2-methy 57.9 1.1E+02 0.0024 33.6 11.2 98 81-194 36-136 (361)
182 PRK11815 tRNA-dihydrouridine s 57.6 67 0.0015 35.1 10.1 112 82-230 25-140 (333)
183 PRK08385 nicotinate-nucleotide 57.5 52 0.0011 35.2 8.8 67 85-164 193-260 (278)
184 TIGR02319 CPEP_Pphonmut carbox 57.3 2.6E+02 0.0056 30.2 14.1 93 423-521 96-204 (294)
185 TIGR03128 RuMP_HxlA 3-hexulose 57.2 2.1E+02 0.0045 28.5 14.7 131 422-581 15-157 (206)
186 TIGR00742 yjbN tRNA dihydrouri 56.8 34 0.00075 37.2 7.6 117 82-234 15-134 (318)
187 cd03465 URO-D_like The URO-D _ 56.7 2.6E+02 0.0056 30.0 14.4 144 415-582 164-330 (330)
188 cd02801 DUS_like_FMN Dihydrour 56.7 1.9E+02 0.004 29.3 12.7 29 309-337 61-89 (231)
189 COG0407 HemE Uroporphyrinogen- 56.6 2.8E+02 0.006 30.8 14.5 192 357-585 124-350 (352)
190 PRK14024 phosphoribosyl isomer 56.2 1.7E+02 0.0037 30.3 12.4 138 423-579 36-188 (241)
191 cd04722 TIM_phosphate_binding 56.0 63 0.0014 30.9 8.7 101 419-527 12-123 (200)
192 COG2513 PrpB PEP phosphonomuta 56.0 17 0.00036 38.9 4.8 45 419-467 166-210 (289)
193 PRK09016 quinolinate phosphori 55.9 43 0.00093 36.1 7.9 63 85-164 219-281 (296)
194 PRK10550 tRNA-dihydrouridine s 55.5 2.8E+02 0.0061 30.1 14.3 138 420-580 15-193 (312)
195 PRK13523 NADPH dehydrogenase N 55.5 1.9E+02 0.004 31.8 13.0 124 77-210 37-205 (337)
196 COG0434 SgcQ Predicted TIM-bar 55.2 1.2E+02 0.0025 31.9 10.4 79 75-165 28-117 (263)
197 smart00633 Glyco_10 Glycosyl h 55.0 1.2E+02 0.0026 31.6 11.1 52 80-132 135-194 (254)
198 PF00478 IMPDH: IMP dehydrogen 54.9 29 0.00063 38.4 6.6 60 45-128 95-156 (352)
199 TIGR02320 PEP_mutase phosphoen 54.7 2.6E+02 0.0057 30.0 13.7 42 544-585 168-210 (285)
200 PRK09140 2-dehydro-3-deoxy-6-p 54.1 2.3E+02 0.005 28.8 12.6 118 423-580 74-199 (206)
201 PF02548 Pantoate_transf: Keto 54.0 70 0.0015 33.9 8.9 100 46-166 77-185 (261)
202 TIGR01163 rpe ribulose-phospha 53.8 2.3E+02 0.0051 28.0 16.2 51 419-469 11-66 (210)
203 TIGR02317 prpB methylisocitrat 53.5 3.2E+02 0.0068 29.4 14.1 139 423-582 92-246 (285)
204 cd04731 HisF The cyclase subun 53.5 2E+02 0.0043 29.6 12.4 124 422-561 30-165 (243)
205 cd00717 URO-D Uroporphyrinogen 53.5 3.2E+02 0.0068 29.6 14.5 41 423-470 242-282 (335)
206 PRK01033 imidazole glycerol ph 53.4 2.1E+02 0.0046 29.9 12.7 141 423-579 34-194 (258)
207 COG0796 MurI Glutamate racemas 53.3 3.1E+02 0.0067 29.3 15.4 146 410-575 45-193 (269)
208 cd03307 Mta_CmuA_like MtaA_Cmu 53.2 2.9E+02 0.0062 29.8 14.1 41 541-581 281-325 (326)
209 PRK02412 aroD 3-dehydroquinate 53.2 2.1E+02 0.0046 29.9 12.6 78 82-165 96-174 (253)
210 PLN02925 4-hydroxy-3-methylbut 53.0 99 0.0022 37.1 10.8 50 419-469 110-163 (733)
211 PRK06106 nicotinate-nucleotide 52.9 58 0.0013 34.9 8.3 62 86-164 206-267 (281)
212 cd07938 DRE_TIM_HMGL 3-hydroxy 52.6 3.1E+02 0.0068 29.1 14.2 130 325-488 83-216 (274)
213 PRK05458 guanosine 5'-monophos 52.4 2.7E+02 0.0058 30.6 13.4 44 421-464 98-145 (326)
214 PLN02417 dihydrodipicolinate s 52.3 1.7E+02 0.0037 31.0 11.9 103 411-527 18-134 (280)
215 PRK05437 isopentenyl pyrophosp 52.2 2.7E+02 0.0058 30.8 13.7 138 418-577 76-231 (352)
216 PRK15063 isocitrate lyase; Pro 52.0 17 0.00036 41.0 4.2 81 421-529 267-350 (428)
217 cd00958 DhnA Class I fructose- 51.9 1.3E+02 0.0028 30.8 10.6 76 86-166 81-166 (235)
218 cd00953 KDG_aldolase KDG (2-ke 51.7 3.2E+02 0.0069 28.9 15.2 142 411-578 16-170 (279)
219 cd04732 HisA HisA. Phosphorib 51.6 2.3E+02 0.0049 28.8 12.3 122 423-560 33-161 (234)
220 COG0279 GmhA Phosphoheptose is 51.2 66 0.0014 31.8 7.6 55 80-136 96-150 (176)
221 PRK12331 oxaloacetate decarbox 51.0 2.8E+02 0.006 31.8 13.9 93 87-210 102-195 (448)
222 TIGR02660 nifV_homocitr homoci 51.0 2.4E+02 0.0053 31.1 13.3 127 322-488 79-208 (365)
223 PRK07094 biotin synthase; Prov 50.9 2.6E+02 0.0056 30.1 13.2 76 85-166 130-218 (323)
224 PF00682 HMGL-like: HMGL-like 50.8 1E+02 0.0022 31.4 9.7 138 312-488 64-204 (237)
225 PF01208 URO-D: Uroporphyrinog 50.8 2.7E+02 0.0058 30.1 13.4 155 309-514 165-339 (343)
226 PRK00115 hemE uroporphyrinogen 50.7 3.3E+02 0.0072 29.7 14.2 24 425-448 253-276 (346)
227 TIGR01949 AroFGH_arch predicte 50.7 2.7E+02 0.0059 29.1 12.9 123 423-567 94-227 (258)
228 cd04732 HisA HisA. Phosphorib 50.6 1.8E+02 0.0039 29.5 11.4 75 85-163 86-166 (234)
229 PRK06052 5-methyltetrahydropte 50.5 2.9E+02 0.0062 30.5 13.1 173 29-235 97-318 (344)
230 PRK14040 oxaloacetate decarbox 50.4 5.1E+02 0.011 30.9 16.4 93 424-526 102-206 (593)
231 TIGR00736 nifR3_rel_arch TIM-b 50.3 3.2E+02 0.0068 28.5 13.9 100 459-581 67-187 (231)
232 TIGR01302 IMP_dehydrog inosine 50.2 1.5E+02 0.0033 33.9 11.7 67 82-162 224-292 (450)
233 KOG2949|consensus 50.1 3.1E+02 0.0068 28.6 12.4 105 46-170 99-212 (306)
234 TIGR02635 RhaI_grampos L-rhamn 49.9 1.5E+02 0.0033 33.1 11.3 118 62-210 139-269 (378)
235 PRK06096 molybdenum transport 49.7 88 0.0019 33.6 9.1 64 85-162 200-263 (284)
236 COG5309 Exo-beta-1,3-glucanase 49.7 86 0.0019 33.3 8.6 33 412-444 253-285 (305)
237 TIGR01302 IMP_dehydrog inosine 49.6 2.1E+02 0.0045 32.7 12.7 58 383-464 211-270 (450)
238 cd01568 QPRTase_NadC Quinolina 49.5 63 0.0014 34.3 7.9 61 87-162 194-254 (269)
239 PRK07094 biotin synthase; Prov 49.4 3.6E+02 0.0079 28.9 19.3 131 412-586 70-210 (323)
240 TIGR00067 glut_race glutamate 49.4 2.2E+02 0.0048 29.8 12.0 51 410-463 38-89 (251)
241 PRK06552 keto-hydroxyglutarate 49.2 2.6E+02 0.0057 28.6 12.2 102 423-565 79-183 (213)
242 cd02931 ER_like_FMN Enoate red 49.1 2.9E+02 0.0063 30.8 13.5 123 77-210 35-214 (382)
243 PRK13111 trpA tryptophan synth 48.8 3.5E+02 0.0076 28.6 17.4 155 420-582 27-224 (258)
244 PF13714 PEP_mutase: Phosphoen 48.7 55 0.0012 34.2 7.2 116 313-466 83-198 (238)
245 PRK07428 nicotinate-nucleotide 48.6 79 0.0017 34.0 8.5 65 85-164 207-272 (288)
246 PRK05567 inosine 5'-monophosph 48.6 78 0.0017 36.5 9.2 65 84-162 230-296 (486)
247 TIGR02127 pyrF_sub2 orotidine 48.6 88 0.0019 33.1 8.8 158 413-580 35-208 (261)
248 PRK04208 rbcL ribulose bisopho 48.6 1.1E+02 0.0025 35.1 10.2 82 74-166 173-264 (468)
249 PF06187 DUF993: Protein of un 48.6 44 0.00096 36.5 6.5 156 321-511 63-237 (382)
250 PRK00957 methionine synthase; 48.6 3E+02 0.0065 29.4 13.2 133 76-235 139-283 (305)
251 PRK05294 carB carbamoyl phosph 48.5 4.8E+02 0.01 33.4 16.8 65 165-248 659-725 (1066)
252 TIGR03128 RuMP_HxlA 3-hexulose 48.3 1.2E+02 0.0027 30.2 9.6 66 86-163 68-133 (206)
253 PRK14042 pyruvate carboxylase 48.1 2.9E+02 0.0064 32.9 13.8 91 89-210 104-195 (596)
254 PRK15458 tagatose 6-phosphate 48.0 3.3E+02 0.0071 31.0 13.3 140 304-457 96-254 (426)
255 PRK00115 hemE uroporphyrinogen 47.8 4.1E+02 0.0088 29.0 15.8 138 419-583 186-344 (346)
256 PRK00865 glutamate racemase; P 47.7 54 0.0012 34.5 7.1 50 73-125 46-95 (261)
257 cd01572 QPRTase Quinolinate ph 47.6 70 0.0015 34.0 7.9 63 85-164 193-255 (268)
258 PRK04326 methionine synthase; 47.5 3.9E+02 0.0085 28.8 14.0 135 77-236 157-302 (330)
259 PF13714 PEP_mutase: Phosphoen 47.5 54 0.0012 34.2 7.0 47 78-128 152-198 (238)
260 TIGR01163 rpe ribulose-phospha 47.0 1.9E+02 0.0042 28.6 10.8 88 81-180 11-103 (210)
261 cd03308 CmuA_CmuC_like CmuA_Cm 47.0 4.4E+02 0.0096 29.2 15.0 83 423-514 281-375 (378)
262 cd04738 DHOD_2_like Dihydrooro 47.0 4.1E+02 0.0089 28.9 14.4 121 423-560 63-231 (327)
263 PRK12344 putative alpha-isopro 46.7 3E+02 0.0064 32.2 13.5 116 322-470 92-210 (524)
264 cd01981 Pchlide_reductase_B Pc 46.6 58 0.0013 36.7 7.6 128 450-583 77-218 (430)
265 cd07939 DRE_TIM_NifV Streptomy 46.6 3.3E+02 0.0072 28.4 12.8 141 322-504 76-219 (259)
266 cd03307 Mta_CmuA_like MtaA_Cmu 46.5 2.8E+02 0.006 29.9 12.7 47 425-478 237-283 (326)
267 KOG2949|consensus 46.4 1.8E+02 0.0039 30.2 10.1 93 419-516 117-220 (306)
268 cd06556 ICL_KPHMT Members of t 46.2 61 0.0013 33.9 7.1 73 47-128 126-198 (240)
269 PLN02475 5-methyltetrahydropte 46.1 4.2E+02 0.0091 32.6 15.1 136 76-235 181-332 (766)
270 PRK05742 nicotinate-nucleotide 45.9 84 0.0018 33.6 8.2 63 85-164 200-262 (277)
271 cd00465 URO-D_CIMS_like The UR 45.8 3.9E+02 0.0084 28.2 15.5 69 423-502 212-284 (306)
272 COG0159 TrpA Tryptophan syntha 45.7 3.4E+02 0.0073 28.9 12.4 124 419-581 31-171 (265)
273 cd04740 DHOD_1B_like Dihydroor 45.5 1.3E+02 0.0028 32.0 9.7 76 81-166 102-190 (296)
274 cd04738 DHOD_2_like Dihydrooro 45.5 2.3E+02 0.0051 30.8 11.8 68 121-210 128-195 (327)
275 PRK11613 folP dihydropteroate 45.2 4.2E+02 0.0091 28.4 16.7 167 384-582 14-206 (282)
276 cd07948 DRE_TIM_HCS Saccharomy 45.0 3.6E+02 0.0078 28.4 12.8 125 324-488 80-207 (262)
277 PRK02048 4-hydroxy-3-methylbut 45.0 2.5E+02 0.0053 33.4 12.2 147 419-583 41-223 (611)
278 PRK12330 oxaloacetate decarbox 44.8 5.6E+02 0.012 29.8 15.8 100 415-526 96-208 (499)
279 PRK05286 dihydroorotate dehydr 44.8 4.2E+02 0.009 29.1 13.7 124 423-562 73-242 (344)
280 PRK09282 pyruvate carboxylase 44.8 6.1E+02 0.013 30.2 16.1 94 425-526 102-205 (592)
281 PRK06843 inosine 5-monophospha 44.7 1.4E+02 0.003 33.8 10.0 60 383-466 140-201 (404)
282 PF00809 Pterin_bind: Pterin b 44.6 68 0.0015 32.6 7.1 34 86-119 24-66 (210)
283 PRK02910 light-independent pro 44.6 99 0.0021 36.0 9.2 26 556-581 186-212 (519)
284 cd04734 OYE_like_3_FMN Old yel 44.2 4.1E+02 0.0089 29.1 13.6 95 72-166 129-252 (343)
285 PRK13397 3-deoxy-7-phosphohept 43.9 3.7E+02 0.0081 28.3 12.5 44 308-352 22-65 (250)
286 COG5016 Pyruvate/oxaloacetate 43.9 2.6E+02 0.0056 31.6 11.5 52 414-468 96-149 (472)
287 cd04724 Tryptophan_synthase_al 43.8 3.6E+02 0.0078 28.0 12.5 21 81-101 14-34 (242)
288 cd00429 RPE Ribulose-5-phospha 43.7 3.3E+02 0.0072 26.8 14.8 49 421-469 14-67 (211)
289 PRK08575 5-methyltetrahydropte 43.5 3.8E+02 0.0082 29.2 13.1 135 77-234 157-301 (326)
290 PF01408 GFO_IDH_MocA: Oxidore 43.2 62 0.0013 28.9 5.9 30 93-125 61-90 (120)
291 PRK02412 aroD 3-dehydroquinate 43.2 3.2E+02 0.0069 28.6 12.0 102 420-527 96-206 (253)
292 cd02911 arch_FMN Archeal FMN-b 43.1 4E+02 0.0086 27.6 14.6 129 424-579 40-188 (233)
293 PRK02048 4-hydroxy-3-methylbut 43.1 3E+02 0.0065 32.7 12.5 51 81-132 41-95 (611)
294 PLN02495 oxidoreductase, actin 42.9 1.4E+02 0.0031 33.4 9.8 71 118-210 110-180 (385)
295 PF07745 Glyco_hydro_53: Glyco 42.9 4.9E+02 0.011 28.7 13.7 128 22-166 58-208 (332)
296 PLN02925 4-hydroxy-3-methylbut 42.8 2.9E+02 0.0064 33.3 12.5 50 81-131 110-163 (733)
297 PF01729 QRPTase_C: Quinolinat 42.7 83 0.0018 31.1 7.1 43 423-466 91-134 (169)
298 cd00739 DHPS DHPS subgroup of 42.6 4.3E+02 0.0093 27.8 16.4 101 412-532 21-134 (257)
299 cd07938 DRE_TIM_HMGL 3-hydroxy 42.5 4.4E+02 0.0096 27.9 14.6 64 81-150 149-216 (274)
300 PRK12331 oxaloacetate decarbox 42.5 5.8E+02 0.013 29.3 16.4 97 425-526 102-205 (448)
301 COG3684 LacD Tagatose-1,6-bisp 42.4 1.7E+02 0.0038 31.0 9.4 41 84-125 189-234 (306)
302 COG0826 Collagenase and relate 42.2 1.2E+02 0.0026 33.6 8.9 72 21-131 51-123 (347)
303 PLN02274 inosine-5'-monophosph 42.2 1.3E+02 0.0027 35.1 9.5 65 84-162 250-316 (505)
304 TIGR01769 GGGP geranylgeranylg 41.9 57 0.0012 33.3 6.0 44 83-126 13-58 (205)
305 TIGR01371 met_syn_B12ind 5-met 41.7 5.2E+02 0.011 31.7 15.0 76 390-468 150-236 (750)
306 TIGR01278 DPOR_BchB light-inde 41.7 1.3E+02 0.0029 34.9 9.7 41 544-584 174-215 (511)
307 smart00633 Glyco_10 Glycosyl h 41.6 1.8E+02 0.0039 30.3 9.9 53 417-470 134-194 (254)
308 PLN02735 carbamoyl-phosphate s 41.5 6.2E+02 0.013 32.6 16.2 70 160-248 687-758 (1102)
309 TIGR01303 IMP_DH_rel_1 IMP deh 41.5 1.2E+02 0.0026 35.0 9.2 67 81-161 224-292 (475)
310 PRK13753 dihydropteroate synth 41.2 4.8E+02 0.01 28.0 13.4 35 84-118 28-74 (279)
311 PRK05848 nicotinate-nucleotide 41.2 1.1E+02 0.0024 32.6 8.3 65 423-502 193-258 (273)
312 TIGR02090 LEU1_arch isopropylm 40.9 3.7E+02 0.0081 29.7 12.7 141 322-504 78-221 (363)
313 PRK08195 4-hyroxy-2-oxovalerat 40.7 5.3E+02 0.011 28.3 18.0 95 425-526 94-197 (337)
314 COG0413 PanB Ketopantoate hydr 40.7 1.6E+02 0.0035 31.2 9.0 101 45-166 75-184 (268)
315 TIGR01334 modD putative molybd 40.6 1.5E+02 0.0033 31.7 9.1 65 85-163 199-263 (277)
316 cd01971 Nitrogenase_VnfN_like 40.5 89 0.0019 35.3 7.9 53 444-502 71-124 (427)
317 TIGR00007 phosphoribosylformim 40.5 3.5E+02 0.0075 27.4 11.7 73 84-162 84-164 (230)
318 TIGR01108 oadA oxaloacetate de 40.1 7.1E+02 0.015 29.6 16.5 94 425-526 97-200 (582)
319 PRK00694 4-hydroxy-3-methylbut 39.7 3.4E+02 0.0073 32.1 12.1 145 419-581 45-225 (606)
320 PF06187 DUF993: Protein of un 39.6 92 0.002 34.1 7.2 92 10-129 85-186 (382)
321 PRK15052 D-tagatose-1,6-bispho 39.5 6.2E+02 0.013 28.8 15.0 117 304-434 93-210 (421)
322 PRK09358 adenosine deaminase; 39.5 5.2E+02 0.011 27.9 16.1 146 412-579 74-242 (340)
323 PF00290 Trp_syntA: Tryptophan 39.4 3.7E+02 0.008 28.5 11.7 155 419-582 24-222 (259)
324 TIGR03855 NAD_NadX aspartate d 39.1 86 0.0019 32.5 6.8 45 81-127 48-95 (229)
325 KOG2550|consensus 38.9 5.5E+02 0.012 29.2 13.0 21 324-344 259-279 (503)
326 cd03309 CmuC_like CmuC_like. P 38.9 5.5E+02 0.012 28.0 14.8 26 423-448 225-251 (321)
327 TIGR01210 conserved hypothetic 38.8 4.8E+02 0.01 28.2 12.9 53 95-149 103-161 (313)
328 PRK11858 aksA trans-homoaconit 38.8 5.9E+02 0.013 28.3 15.0 141 322-504 82-225 (378)
329 cd08213 RuBisCO_large_III Ribu 38.7 1.8E+02 0.004 32.9 9.8 77 82-166 148-234 (412)
330 PRK00915 2-isopropylmalate syn 38.6 6.1E+02 0.013 29.6 14.4 123 314-470 78-205 (513)
331 cd07940 DRE_TIM_IPMS 2-isoprop 38.6 4.9E+02 0.011 27.3 14.0 127 324-488 78-212 (268)
332 PRK05437 isopentenyl pyrophosp 38.5 4.6E+02 0.01 28.9 12.9 82 79-166 75-160 (352)
333 PRK07896 nicotinate-nucleotide 38.3 1E+02 0.0023 33.1 7.5 31 425-456 212-242 (289)
334 PRK05222 5-methyltetrahydropte 38.3 6.5E+02 0.014 30.9 15.1 137 76-236 576-732 (758)
335 cd04729 NanE N-acetylmannosami 38.2 1.1E+02 0.0024 31.0 7.5 66 83-163 81-150 (219)
336 TIGR00078 nadC nicotinate-nucl 38.2 1.1E+02 0.0024 32.4 7.7 61 85-162 189-249 (265)
337 cd04747 OYE_like_5_FMN Old yel 38.0 6E+02 0.013 28.2 14.6 52 412-468 232-289 (361)
338 cd01966 Nitrogenase_NifN_1 Nit 37.8 88 0.0019 35.3 7.3 28 559-587 160-187 (417)
339 PF01487 DHquinase_I: Type I 3 37.8 2.8E+02 0.0062 28.1 10.5 78 81-165 75-152 (224)
340 COG0159 TrpA Tryptophan syntha 37.7 5.3E+02 0.012 27.5 17.2 110 313-457 29-146 (265)
341 TIGR01182 eda Entner-Doudoroff 37.7 2.9E+02 0.0062 28.2 10.2 108 423-570 71-181 (204)
342 cd02803 OYE_like_FMN_family Ol 37.6 3.1E+02 0.0067 29.4 11.3 29 410-438 129-160 (327)
343 TIGR02810 agaZ_gatZ D-tagatose 37.5 5.3E+02 0.012 29.3 12.9 140 304-457 92-250 (420)
344 PLN02716 nicotinate-nucleotide 37.5 1.2E+02 0.0027 32.9 7.9 64 85-164 214-291 (308)
345 TIGR01235 pyruv_carbox pyruvat 37.4 4.5E+02 0.0099 33.9 14.0 104 77-210 624-730 (1143)
346 PRK00694 4-hydroxy-3-methylbut 37.3 2.8E+02 0.0061 32.7 11.0 49 82-131 46-98 (606)
347 TIGR03217 4OH_2_O_val_ald 4-hy 37.2 5.9E+02 0.013 27.9 15.1 95 425-526 93-196 (333)
348 cd02930 DCR_FMN 2,4-dienoyl-Co 37.1 2.3E+02 0.005 31.1 10.3 29 410-438 125-156 (353)
349 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.8 5.3E+02 0.012 27.2 14.3 94 86-210 96-190 (275)
350 TIGR03326 rubisco_III ribulose 36.6 2.1E+02 0.0045 32.5 9.8 76 83-166 162-247 (412)
351 cd02940 DHPD_FMN Dihydropyrimi 36.5 3.5E+02 0.0077 28.9 11.4 29 313-341 111-139 (299)
352 PRK06233 hypothetical protein; 36.4 6.4E+02 0.014 28.0 14.6 154 76-242 166-350 (372)
353 PLN02274 inosine-5'-monophosph 36.4 1.2E+02 0.0025 35.4 8.1 58 383-464 235-294 (505)
354 PF14394 DUF4423: Domain of un 36.3 1.7E+02 0.0037 28.9 8.1 57 264-333 57-113 (171)
355 PLN02424 ketopantoate hydroxym 36.1 5.2E+02 0.011 28.4 12.4 101 46-166 96-205 (332)
356 COG2875 CobM Precorrin-4 methy 36.0 3.7E+02 0.008 28.2 10.5 122 417-553 88-216 (254)
357 cd00717 URO-D Uroporphyrinogen 36.0 5.9E+02 0.013 27.5 15.8 138 418-581 176-334 (335)
358 PRK07565 dihydroorotate dehydr 35.9 3.4E+02 0.0073 29.6 11.3 63 454-525 96-172 (334)
359 TIGR02635 RhaI_grampos L-rhamn 35.4 1E+02 0.0022 34.5 7.1 176 312-516 69-267 (378)
360 cd08206 RuBisCO_large_I_II_III 35.3 2E+02 0.0043 32.6 9.4 82 74-166 145-236 (414)
361 TIGR01235 pyruv_carbox pyruvat 35.2 1.2E+02 0.0026 39.0 8.4 94 80-180 688-787 (1143)
362 PRK00507 deoxyribose-phosphate 35.1 84 0.0018 32.4 6.0 26 311-337 133-158 (221)
363 PRK08385 nicotinate-nucleotide 34.9 1.4E+02 0.003 32.0 7.7 34 423-457 193-226 (278)
364 PRK05222 5-methyltetrahydropte 34.8 5.6E+02 0.012 31.5 13.8 132 76-234 179-324 (758)
365 cd02932 OYE_YqiM_FMN Old yello 34.6 5.4E+02 0.012 28.0 12.6 89 72-162 142-260 (336)
366 cd04723 HisA_HisF Phosphoribos 34.6 3.5E+02 0.0076 27.9 10.6 65 422-489 90-157 (233)
367 PRK12581 oxaloacetate decarbox 34.5 6.9E+02 0.015 28.9 13.6 97 77-210 104-204 (468)
368 PRK12858 tagatose 1,6-diphosph 34.5 6.7E+02 0.014 27.7 13.4 139 412-563 43-204 (340)
369 PRK06978 nicotinate-nucleotide 34.2 1.5E+02 0.0032 32.1 7.8 64 84-164 215-278 (294)
370 cd07944 DRE_TIM_HOA_like 4-hyd 34.0 5.8E+02 0.013 26.9 12.4 96 425-527 88-192 (266)
371 cd01573 modD_like ModD; Quinol 33.9 1.8E+02 0.0039 31.0 8.4 56 90-160 199-255 (272)
372 COG1794 RacX Aspartate racemas 33.9 1.7E+02 0.0037 30.4 7.8 178 349-567 9-198 (230)
373 PRK08883 ribulose-phosphate 3- 33.8 5.4E+02 0.012 26.4 13.4 147 420-579 13-187 (220)
374 cd01292 metallo-dependent_hydr 33.7 4.9E+02 0.011 25.9 16.4 158 410-579 26-195 (275)
375 cd03466 Nitrogenase_NifN_2 Nit 33.3 94 0.002 35.2 6.6 100 479-586 71-183 (429)
376 cd01965 Nitrogenase_MoFe_beta_ 33.2 96 0.0021 35.0 6.7 106 473-585 61-183 (428)
377 PRK12344 putative alpha-isopro 33.1 8E+02 0.017 28.7 14.2 64 81-150 158-224 (524)
378 PRK09282 pyruvate carboxylase 33.0 6.5E+02 0.014 30.0 13.6 92 88-210 103-195 (592)
379 PLN02433 uroporphyrinogen deca 33.0 6.8E+02 0.015 27.3 15.9 82 425-515 246-334 (345)
380 cd03312 CIMS_N_terminal_like C 32.5 7.2E+02 0.016 27.5 15.0 134 414-568 177-323 (360)
381 PF01487 DHquinase_I: Type I 3 32.4 4E+02 0.0086 27.1 10.5 102 419-527 75-183 (224)
382 cd04726 KGPDC_HPS 3-Keto-L-gul 32.2 2.8E+02 0.0062 27.3 9.2 66 84-163 67-133 (202)
383 PRK12999 pyruvate carboxylase; 32.2 1E+03 0.022 30.8 16.0 96 425-526 633-742 (1146)
384 cd04724 Tryptophan_synthase_al 32.1 5.9E+02 0.013 26.3 16.6 21 419-439 14-34 (242)
385 COG1646 Predicted phosphate-bi 31.9 63 0.0014 33.6 4.4 48 419-466 28-77 (240)
386 PRK09016 quinolinate phosphori 31.8 1.3E+02 0.0029 32.5 7.0 63 423-502 219-281 (296)
387 cd07945 DRE_TIM_CMS Leptospira 31.7 6.6E+02 0.014 26.8 13.3 140 325-504 84-228 (280)
388 PF04551 GcpE: GcpE protein; 31.5 2.3E+02 0.0049 31.5 8.7 145 419-581 31-198 (359)
389 TIGR00315 cdhB CO dehydrogenas 31.4 3.3E+02 0.0072 26.8 9.1 119 428-555 24-160 (162)
390 PRK07428 nicotinate-nucleotide 31.4 2.3E+02 0.005 30.5 8.7 43 423-466 207-250 (288)
391 PLN02433 uroporphyrinogen deca 31.4 7.2E+02 0.016 27.1 16.5 138 422-585 182-339 (345)
392 PRK14040 oxaloacetate decarbox 31.3 8.3E+02 0.018 29.1 14.1 91 87-210 103-196 (593)
393 PRK06498 isocitrate lyase; Pro 31.3 93 0.002 35.8 5.9 31 429-459 342-374 (531)
394 PRK12330 oxaloacetate decarbox 31.1 9E+02 0.02 28.2 14.0 91 87-210 103-196 (499)
395 TIGR01417 PTS_I_fam phosphoeno 31.1 7.5E+02 0.016 29.3 13.7 39 418-456 366-407 (565)
396 TIGR00036 dapB dihydrodipicoli 31.0 1.2E+02 0.0026 32.0 6.5 33 93-128 67-99 (266)
397 cd00502 DHQase_I Type I 3-dehy 31.0 5.8E+02 0.013 25.9 12.1 76 82-165 77-152 (225)
398 TIGR02151 IPP_isom_2 isopenten 30.9 4E+02 0.0086 29.1 10.8 114 78-229 67-185 (333)
399 PRK00125 pyrF orotidine 5'-pho 30.8 3.2E+02 0.007 29.2 9.7 159 412-582 34-212 (278)
400 PF02515 CoA_transf_3: CoA-tra 30.6 1.3E+02 0.0028 30.0 6.4 74 310-421 4-77 (191)
401 PRK06559 nicotinate-nucleotide 30.6 1.8E+02 0.0038 31.4 7.7 63 85-164 208-270 (290)
402 PLN02475 5-methyltetrahydropte 30.6 4.1E+02 0.0088 32.7 11.6 78 390-470 155-246 (766)
403 COG1038 PycA Pyruvate carboxyl 30.2 8.1E+02 0.017 30.4 13.3 99 77-210 629-735 (1149)
404 PF00682 HMGL-like: HMGL-like 30.1 3.7E+02 0.0079 27.4 9.9 43 166-210 135-178 (237)
405 PRK13587 1-(5-phosphoribosyl)- 29.8 5.8E+02 0.013 26.3 11.3 64 423-488 89-158 (234)
406 cd01568 QPRTase_NadC Quinolina 29.8 1.4E+02 0.003 31.7 6.8 40 428-468 197-236 (269)
407 PF00248 Aldo_ket_red: Aldo/ke 29.8 6.4E+02 0.014 26.0 15.0 222 311-580 13-266 (283)
408 cd02931 ER_like_FMN Enoate red 29.8 8.2E+02 0.018 27.3 15.5 70 383-467 13-104 (382)
409 cd07943 DRE_TIM_HOA 4-hydroxy- 29.8 5.2E+02 0.011 27.0 11.1 15 196-210 168-182 (263)
410 TIGR02321 Pphn_pyruv_hyd phosp 29.6 80 0.0017 34.0 5.0 42 82-125 167-209 (290)
411 cd00740 MeTr MeTr subgroup of 29.4 4.1E+02 0.0089 27.9 10.2 42 83-124 28-73 (252)
412 PRK07807 inosine 5-monophospha 29.3 4.4E+02 0.0095 30.5 11.2 93 317-464 228-335 (479)
413 cd00381 IMPDH IMPDH: The catal 29.3 1.4E+02 0.0031 32.6 6.9 16 85-100 147-162 (325)
414 PLN02520 bifunctional 3-dehydr 29.3 6.8E+02 0.015 29.3 12.9 77 83-166 99-175 (529)
415 cd02933 OYE_like_FMN Old yello 29.1 5.5E+02 0.012 28.1 11.5 128 73-205 141-304 (338)
416 PRK15108 biotin synthase; Prov 29.1 6.8E+02 0.015 27.5 12.2 16 326-341 307-322 (345)
417 PRK06015 keto-hydroxyglutarate 29.0 4.8E+02 0.01 26.5 10.2 48 423-487 67-114 (201)
418 PRK05718 keto-hydroxyglutarate 29.0 6.4E+02 0.014 25.8 11.4 25 311-335 23-47 (212)
419 KOG0623|consensus 29.0 1E+02 0.0022 33.7 5.5 52 223-279 485-539 (541)
420 PF09587 PGA_cap: Bacterial ca 28.9 1.5E+02 0.0032 30.8 6.8 24 194-217 88-111 (250)
421 PRK06106 nicotinate-nucleotide 28.8 1.7E+02 0.0036 31.5 7.1 62 424-502 206-267 (281)
422 PF04131 NanE: Putative N-acet 28.7 5.5E+02 0.012 26.0 10.2 65 86-166 56-122 (192)
423 cd08207 RLP_NonPhot Ribulose b 28.7 3.5E+02 0.0075 30.7 9.9 81 74-166 156-246 (406)
424 cd08209 RLP_DK-MTP-1-P-enolase 28.7 2.8E+02 0.0061 31.2 9.2 102 81-231 140-251 (391)
425 cd07941 DRE_TIM_LeuA3 Desulfob 28.6 7.2E+02 0.016 26.2 14.7 64 81-150 151-218 (273)
426 PRK13585 1-(5-phosphoribosyl)- 28.6 5.7E+02 0.012 26.1 11.0 124 421-562 34-166 (241)
427 cd01572 QPRTase Quinolinate ph 28.5 2.2E+02 0.0047 30.3 7.9 43 423-468 193-235 (268)
428 PRK09389 (R)-citramalate synth 28.5 5.5E+02 0.012 29.8 11.8 138 325-504 83-223 (488)
429 CHL00040 rbcL ribulose-1,5-bis 28.5 3E+02 0.0064 31.9 9.5 82 74-166 180-271 (475)
430 TIGR01430 aden_deam adenosine 28.4 7.6E+02 0.016 26.4 15.0 147 412-579 65-232 (324)
431 TIGR03151 enACPred_II putative 28.4 7.2E+02 0.016 26.8 12.1 11 200-210 149-159 (307)
432 PF01081 Aldolase: KDPG and KH 28.3 4.6E+02 0.01 26.6 9.9 104 423-566 71-177 (196)
433 cd00381 IMPDH IMPDH: The catal 28.3 3.6E+02 0.0077 29.4 9.8 66 83-162 95-162 (325)
434 PRK07998 gatY putative fructos 28.3 6.7E+02 0.015 26.9 11.6 118 84-207 7-165 (283)
435 PRK06096 molybdenum transport 28.2 2.8E+02 0.0061 29.8 8.7 33 423-456 200-232 (284)
436 TIGR03855 NAD_NadX aspartate d 28.2 1.6E+02 0.0034 30.6 6.6 45 419-465 48-95 (229)
437 PRK06543 nicotinate-nucleotide 28.2 2.1E+02 0.0046 30.7 7.8 63 85-164 204-266 (281)
438 PRK12999 pyruvate carboxylase; 27.9 1.7E+02 0.0037 37.6 8.1 112 48-180 669-789 (1146)
439 cd08148 RuBisCO_large Ribulose 27.9 3.2E+02 0.007 30.5 9.4 77 82-166 144-230 (366)
440 TIGR00067 glut_race glutamate 27.8 1.6E+02 0.0036 30.7 6.9 50 73-125 39-89 (251)
441 PF00016 RuBisCO_large: Ribulo 27.7 1.3E+02 0.0027 32.8 6.1 92 46-164 14-116 (309)
442 TIGR03700 mena_SCO4494 putativ 27.7 84 0.0018 34.6 4.9 77 84-167 150-241 (351)
443 COG5309 Exo-beta-1,3-glucanase 27.7 1.1E+02 0.0025 32.5 5.4 44 60-106 242-285 (305)
444 cd01973 Nitrogenase_VFe_beta_l 27.6 1.3E+02 0.0029 34.3 6.6 107 473-587 66-191 (454)
445 cd02809 alpha_hydroxyacid_oxid 27.5 5.2E+02 0.011 27.6 10.9 131 302-500 116-255 (299)
446 PRK06256 biotin synthase; Vali 27.3 2.7E+02 0.0058 30.2 8.7 13 196-208 253-265 (336)
447 PRK05567 inosine 5'-monophosph 27.2 3.9E+02 0.0085 30.8 10.4 43 422-464 230-274 (486)
448 PRK07114 keto-hydroxyglutarate 27.1 7.1E+02 0.015 25.7 11.9 102 423-564 82-187 (222)
449 TIGR01093 aroD 3-dehydroquinat 27.1 6.9E+02 0.015 25.5 11.5 69 91-165 89-157 (228)
450 TIGR02660 nifV_homocitr homoci 27.0 8.8E+02 0.019 26.7 13.0 15 196-210 169-183 (365)
451 PRK06552 keto-hydroxyglutarate 27.0 3.2E+02 0.007 27.9 8.7 57 85-162 79-135 (213)
452 cd01320 ADA Adenosine deaminas 26.9 8E+02 0.017 26.2 15.5 146 412-579 66-233 (325)
453 TIGR00742 yjbN tRNA dihydrouri 26.9 7.6E+02 0.017 26.8 12.0 116 432-565 24-164 (318)
454 PRK14024 phosphoribosyl isomer 26.8 5.9E+02 0.013 26.3 10.8 75 85-166 88-169 (241)
455 PTZ00314 inosine-5'-monophosph 26.6 1.6E+02 0.0035 34.1 7.1 64 85-162 294-372 (495)
456 cd07940 DRE_TIM_IPMS 2-isoprop 26.6 7.6E+02 0.016 25.8 15.3 43 542-585 140-186 (268)
457 cd08207 RLP_NonPhot Ribulose b 26.6 8.5E+02 0.018 27.6 12.5 149 412-582 156-323 (406)
458 PF03481 SUA5: Putative GTP-bi 26.3 92 0.002 28.9 4.2 45 74-118 78-122 (125)
459 TIGR02321 Pphn_pyruv_hyd phosp 26.3 8.4E+02 0.018 26.2 12.5 101 422-525 93-212 (290)
460 cd07944 DRE_TIM_HOA_like 4-hyd 26.3 7.8E+02 0.017 25.9 13.1 91 87-210 88-179 (266)
461 TIGR01286 nifK nitrogenase mol 26.2 1.6E+02 0.0035 34.3 7.0 111 468-586 117-249 (515)
462 PF01261 AP_endonuc_2: Xylose 26.0 2.4E+02 0.0052 27.3 7.4 69 76-150 107-183 (213)
463 PRK14476 nitrogenase molybdenu 26.0 1.5E+02 0.0033 33.9 6.7 114 467-587 66-198 (455)
464 cd06824 PLPDE_III_Yggs_like Py 26.0 4.2E+02 0.0092 26.9 9.4 67 99-166 95-163 (224)
465 PRK07259 dihydroorotate dehydr 26.0 3.9E+02 0.0084 28.5 9.5 75 82-166 105-193 (301)
466 PLN02321 2-isopropylmalate syn 26.0 8.6E+02 0.019 29.3 13.0 66 81-150 240-310 (632)
467 TIGR01334 modD putative molybd 25.9 3.4E+02 0.0073 29.1 8.8 55 423-487 199-253 (277)
468 PRK00278 trpC indole-3-glycero 25.9 4E+02 0.0087 28.0 9.4 63 85-163 124-187 (260)
469 TIGR01093 aroD 3-dehydroquinat 25.8 7.2E+02 0.016 25.3 12.2 93 429-527 89-188 (228)
470 COG0826 Collagenase and relate 25.7 3.2E+02 0.0068 30.3 8.8 71 86-163 18-99 (347)
471 PRK07535 methyltetrahydrofolat 25.6 38 0.00083 35.8 1.6 44 622-673 1-45 (261)
472 COG5564 Predicted TIM-barrel e 25.5 73 0.0016 32.9 3.5 50 323-372 171-220 (276)
473 PRK13111 trpA tryptophan synth 25.4 8.2E+02 0.018 25.8 13.7 130 440-582 21-167 (258)
474 TIGR01108 oadA oxaloacetate de 25.4 1.2E+03 0.026 27.7 14.2 93 87-210 97-190 (582)
475 PRK14041 oxaloacetate decarbox 25.4 1.1E+03 0.024 27.3 15.8 167 313-526 23-204 (467)
476 TIGR01464 hemE uroporphyrinoge 25.3 8.8E+02 0.019 26.2 14.1 135 421-581 182-337 (338)
477 PLN02617 imidazole glycerol ph 25.2 6E+02 0.013 29.9 11.4 48 422-469 337-395 (538)
478 cd03309 CmuC_like CmuC_like. P 25.2 9.1E+02 0.02 26.3 14.5 116 79-210 153-288 (321)
479 PRK14041 oxaloacetate decarbox 25.1 1.1E+03 0.024 27.2 13.5 91 87-210 101-194 (467)
480 TIGR00970 leuA_yeast 2-isoprop 24.9 6.6E+02 0.014 29.7 11.7 116 8-150 134-260 (564)
481 TIGR02990 ectoine_eutA ectoine 24.8 8E+02 0.017 25.5 11.4 78 86-166 111-191 (239)
482 PRK08445 hypothetical protein; 24.7 2.9E+02 0.0063 30.4 8.4 77 83-166 143-234 (348)
483 PF03481 SUA5: Putative GTP-bi 24.6 92 0.002 28.9 3.8 45 412-456 78-122 (125)
484 KOG1268|consensus 24.6 1.9E+02 0.0042 33.6 6.8 88 434-530 357-458 (670)
485 COG1856 Uncharacterized homolo 24.5 1.7E+02 0.0036 30.6 5.8 28 22-58 205-232 (275)
486 PLN02321 2-isopropylmalate syn 24.1 1.3E+03 0.028 27.7 14.1 111 328-470 180-296 (632)
487 cd00452 KDPG_aldolase KDPG and 24.0 3.1E+02 0.0068 27.1 7.8 62 85-162 108-170 (190)
488 PTZ00314 inosine-5'-monophosph 23.9 4.1E+02 0.0088 30.9 9.7 63 84-160 243-307 (495)
489 PRK08255 salicylyl-CoA 5-hydro 23.8 9.4E+02 0.02 29.5 13.3 90 73-164 540-659 (765)
490 PLN02389 biotin synthase 23.8 4.4E+02 0.0095 29.5 9.6 10 196-205 281-290 (379)
491 PF01408 GFO_IDH_MocA: Oxidore 23.8 1.9E+02 0.004 25.7 5.7 43 421-465 75-119 (120)
492 PF07302 AroM: AroM protein; 23.7 1.8E+02 0.0038 30.2 6.0 44 82-128 166-209 (221)
493 COG1038 PycA Pyruvate carboxyl 23.7 1.7E+02 0.0037 35.8 6.4 71 80-160 693-766 (1149)
494 COG0673 MviM Predicted dehydro 23.6 1.4E+02 0.003 32.0 5.5 65 91-166 64-129 (342)
495 PRK00748 1-(5-phosphoribosyl)- 23.5 6.6E+02 0.014 25.4 10.3 45 423-469 87-131 (233)
496 cd01974 Nitrogenase_MoFe_beta 23.4 1.4E+02 0.003 33.9 5.7 101 478-586 71-189 (435)
497 PF08267 Meth_synt_1: Cobalami 23.3 5.1E+02 0.011 28.2 9.7 79 76-166 176-262 (310)
498 PRK00915 2-isopropylmalate syn 23.3 9E+02 0.02 28.1 12.4 64 81-150 149-219 (513)
499 COG0796 MurI Glutamate racemas 23.2 9.4E+02 0.02 25.7 13.6 204 73-332 46-262 (269)
500 cd01968 Nitrogenase_NifE_I Nit 23.1 2.1E+02 0.0045 32.1 7.0 128 444-583 71-210 (410)
No 1
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-75 Score=593.79 Aligned_cols=294 Identities=25% Similarity=0.358 Sum_probs=264.2
Q ss_pred HHHHHhhCceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhh
Q psy13907 268 INEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQH 347 (698)
Q Consensus 268 ~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~ 347 (698)
+.+ .++++|+|+||+|||+||++ |+++.|+++-.-..++|++|+||+|++||++|++||||||+||||++|+.+|++|
T Consensus 8 l~~-~l~~rVLv~DGAmGT~lq~~-~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady 85 (311)
T COG0646 8 LRE-ALKERVLVLDGAMGTMLQSY-GLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADY 85 (311)
T ss_pred HHH-HHHcCEEEeechhhhhHHhc-CCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhh
Confidence 444 47899999999999999999 9997666543344599999999999999999999999999999999999999997
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy13907 348 LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEA 427 (698)
Q Consensus 348 ~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~ 427 (698)
++ ++++++||++|++|||+|++++. + + +++||||||||++.+++.- |++ ++|||++++.|++|+++
T Consensus 86 -~l-ed~v~~in~~aa~iAR~aA~~~~--~---~-k~rfVaGsiGPt~k~~~~~----~~~--~v~fd~l~~ay~eq~~~ 151 (311)
T COG0646 86 -GL-EDKVYEINQKAARIARRAADEAG--D---P-KPRFVAGSIGPTNKTLSIS----PDF--AVTFDELVEAYREQVEG 151 (311)
T ss_pred -Ch-HHHHHHHHHHHHHHHHHHHhhcC--C---C-CceEEEEeccCcCCcCCcC----Ccc--cccHHHHHHHHHHHHHH
Confidence 99 99999999999999999999874 2 3 6899999999999655442 222 69999999999999999
Q ss_pred HHhCCCCEEEecccCCHHHHHHHHHHHHhcCC-----CeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC
Q psy13907 428 LIQGGIDLLAIETLPAQEEAMVLAELIKEYPG-----LKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 502 (698)
Q Consensus 428 L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~-----~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC 502 (698)
|+++|||+||+||++|++|+|+|++++++.++ +|||+|.|+.+.|++++|+++.+....+. +.++++||+||
T Consensus 152 Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~---~~~~~~vGlNC 228 (311)
T COG0646 152 LIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLE---HLGPDAVGLNC 228 (311)
T ss_pred HHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhh---ccCCcEEeecc
Confidence 99999999999999999999999999997654 99999999999999999999887777664 46799999999
Q ss_pred -CChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcc-cccCCChhhHHHHHHHHHHcC-CeEEeecCCCchHHHHHHH
Q psy13907 503 -LAPHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRI-WMNKDSVPSVDTYVPRWLDTG-VKYVGGCCRTNADDMKNVN 577 (698)
Q Consensus 503 -~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~-~~~~~~p~~~a~~~~~~~~~G-~~iiGGCCGTtP~hI~al~ 577 (698)
+||+.|+++|+.++ ++.+|+||||||+|+ ..|+ ..|+++|+.|+++++.|++.| +|||||||||||+||++|+
T Consensus 229 a~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~--~~g~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia 306 (311)
T COG0646 229 ALGPDEMRPHLRELSRIADAFVSVYPNAGLPN--AFGERAVYDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIA 306 (311)
T ss_pred ccCHHHHHHHHHHHHhccCceEEEeCCCCCCc--ccCCccccCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHH
Confidence 99999999999998 899999999999998 4443 446999999999999999998 9999999999999999999
Q ss_pred hcccc
Q psy13907 578 QVPVK 582 (698)
Q Consensus 578 ~~v~~ 582 (698)
+++++
T Consensus 307 ~~v~~ 311 (311)
T COG0646 307 EAVKG 311 (311)
T ss_pred HHhcC
Confidence 99864
No 2
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=2.6e-74 Score=691.55 Aligned_cols=372 Identities=20% Similarity=0.303 Sum_probs=324.7
Q ss_pred HHHHHHhhCceEEEecccccccccccCCCCcCcCCC--cccc-------hhhcccChHHHHHHHHHHHHHhcchhhcccc
Q psy13907 267 KINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDN--PLWC-------SAFLHSNRQAVIDTHRDYVRAGCDIVTTNTY 337 (698)
Q Consensus 267 ~~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~--~lws-------~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf 337 (698)
.+.+. ++++++|+||||||+||++ |+++.|+.+. ++|+ +++++++||+|++||++|++||||||+||||
T Consensus 10 ~l~~~-L~~riLIlDGAMGT~Lq~~-gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII~TNTF 87 (1229)
T PRK09490 10 QLRAL-LAERILVLDGAMGTMIQRY-KLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADIIETNTF 87 (1229)
T ss_pred HHHHH-HcCCeEEEECcchHHHHHc-CCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCceeecCCC
Confidence 35554 6788999999999999999 9875555442 4564 6899999999999999999999999999999
Q ss_pred cCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcC--CCCCCCCCCCCCCCCCCCHH
Q psy13907 338 QASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYG--AFLHDGSEYRGDYIDSTTPQ 415 (698)
Q Consensus 338 ~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~--~~l~~~~ey~g~y~~~~t~d 415 (698)
++|+.+|++| |+ +++++++|++|++|||+|++++.+++ +++++||||||||+| .+++|++||+| | ++++++
T Consensus 88 ~a~~~~L~~y-gl-~~~~~eln~~av~LAreAa~~~~~~~---~~~~~~VAGSIGP~g~~~sl~p~~e~pg-~-~~it~d 160 (1229)
T PRK09490 88 NATTIAQADY-GM-ESLVYELNFAAARLAREAADEWTAKT---PDKPRFVAGVLGPTNRTASISPDVNDPG-F-RNVTFD 160 (1229)
T ss_pred CCCHHHHhhC-Ch-HHHHHHHHHHHHHHHHHHHHHhhhcc---CCCceEEEEecCCCCcccccCCCccccc-c-cCCCHH
Confidence 9999999986 99 89999999999999999999985433 456799999999999 56779999999 4 579999
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc-----CCCeEEEEEEecC-CCccCCCCcHHHHHHHHHH
Q psy13907 416 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-----PGLKAWISFSCKD-EKHTCHGDKFGLIARDVYA 489 (698)
Q Consensus 416 el~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~-----~~~Pv~iS~t~~~-~g~l~~G~~l~~~v~~~~~ 489 (698)
+++++|++|+++|+++|||+|++||++|+.|+|+++.|++++ .++||||||||.+ +|+|++|+++..++..+.
T Consensus 161 el~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~- 239 (1229)
T PRK09490 161 ELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLR- 239 (1229)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHh-
Confidence 999999999999999999999999999999999999999975 4799999999975 799999999988877763
Q ss_pred hCCCCceEEEEcCC-ChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcC-CeEEeec
Q psy13907 490 KNPAQLVAVGVNCL-APHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTG-VKYVGGC 565 (698)
Q Consensus 490 ~~~~~~~~iGlNC~-~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G-~~iiGGC 565 (698)
+.++++||+||+ ||++|.++|+.++ ++.|++||||||+|+ ..+.| +.+|++|++++++|++.| ++|||||
T Consensus 240 --~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~--~~~~y--d~tPe~~a~~~~~~~~~G~v~IIGGC 313 (1229)
T PRK09490 240 --HAKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPN--AFGEY--DETPEEMAAQIGEFAESGFLNIVGGC 313 (1229)
T ss_pred --cCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCC--CCCCC--CCCHHHHHHHHHHHHHcCCCCEEEec
Confidence 478899999995 8999999999997 789999999999998 45545 889999999999999999 9999999
Q ss_pred CCCchHHHHHHHhccccCCCCCcccccccccCCCCceeeeeeccccccccccCCcccEEE-EeecCCchhhhhhhhhccc
Q psy13907 566 CRTNADDMKNVNQVPVKFSITPESLTNARDKFNIPRFRISGHLDSTECSVVRPFTGEIVI-EQTELPIKSVELQLVRVET 644 (698)
Q Consensus 566 CGTtP~hI~al~~~v~~~~~~~~~~~~~~e~~~~~~~~lsG~~~~~~~~~~~p~~~~~~v-Er~nv~~~s~~~~Lir~e~ 644 (698)
|||||+||++|++++++.+|++.+.. .+.++.||+ +++...+.+++++| ||+|++||..+.++|+.++
T Consensus 314 CGTtPeHI~ala~~l~~~~p~~~~~~-------~~~~~~S~~----~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d 382 (1229)
T PRK09490 314 CGTTPEHIAAIAEAVAGLPPRKLPEI-------PVACRLSGL----EPLNIDDDSLFVNVGERTNVTGSAKFARLIKEED 382 (1229)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCc-------Ccceeeecc----eEEeecCCCcccccccccchhccHHHHHHHHcCC
Confidence 99999999999999999999764442 456799999 88888999999999 9999999999999999666
Q ss_pred ccccccchhhhhhhhhhhhccccccCCC
Q psy13907 645 CGCAEGYSRDATEIQNIQIGEGNVFTGI 672 (698)
Q Consensus 645 ~~~~~~~~~~~~~iq~~qi~~g~~~~~~ 672 (698)
+..+...| .-|+.+|...-++
T Consensus 383 ~~~al~~A-------~~qve~GA~iIDV 403 (1229)
T PRK09490 383 YDEALDVA-------RQQVENGAQIIDI 403 (1229)
T ss_pred HHHHHHHH-------HHHHHCCCCEEEE
Confidence 55555444 5555555444443
No 3
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=3.1e-71 Score=667.61 Aligned_cols=361 Identities=21% Similarity=0.289 Sum_probs=316.8
Q ss_pred hCceEEEecccccccccccCCCCcCcCCCcccc------------hhhcccChHHHHHHHHHHHHHhcchhhcccccCCh
Q psy13907 274 ENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWC------------SAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASV 341 (698)
Q Consensus 274 ~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws------------~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~ 341 (698)
+++++|+||||||+||++ |+++ .+++|+ +.+++++||+|++||++|++||||||+||||++|+
T Consensus 2 ~~rilvlDGamGT~Lq~~-gl~~----~d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~ 76 (1178)
T TIGR02082 2 NQRILVLDGAMGTQLQSA-NLTE----ADFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTT 76 (1178)
T ss_pred CCceEEEEChhHHHHHhC-CCCc----cccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCH
Confidence 568999999999999999 9983 355674 89999999999999999999999999999999999
Q ss_pred hchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCC--CCCCCCCCCCCCCCCCCHHHHHH
Q psy13907 342 EGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGA--FLHDGSEYRGDYIDSTTPQELID 419 (698)
Q Consensus 342 ~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~--~l~~~~ey~g~y~~~~t~del~~ 419 (698)
.+|++| |+ +++++++|++|++|||+|++++.+ + +++++||||||||+|. +++|+++|+| | +++|++++++
T Consensus 77 ~~L~~y-g~-~~~~~eln~~av~lAr~Aa~~~~~-~---~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~-~~~t~del~~ 148 (1178)
T TIGR02082 77 ISQADY-DL-EDLIYDLNFKGAKLARAVADEFTL-T---PEKPRFVAGSMGPTNKTATLSPDVERPG-F-RNVTYDELVD 148 (1178)
T ss_pred HHHhhC-CH-HHHHHHHHHHHHHHHHHHHHhhcc-c---CCCceEEEEEeCCCCCCccCCCccccCc-c-CCCCHHHHHH
Confidence 999986 99 899999999999999999998743 2 3567999999999995 5778899988 4 5799999999
Q ss_pred HHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc-----CCCeEEEEEEe-cCCCccCCCCcHHHHHHHHHHhCCC
Q psy13907 420 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-----PGLKAWISFSC-KDEKHTCHGDKFGLIARDVYAKNPA 493 (698)
Q Consensus 420 ~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~-----~~~Pv~iS~t~-~~~g~l~~G~~l~~~v~~~~~~~~~ 493 (698)
+|++|+++|+++|||+|++||++|+.|+||++.++++. .++|||||+++ +++|+|++|+++.+++..+. +.
T Consensus 149 ~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~---~~ 225 (1178)
T TIGR02082 149 AYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLE---HA 225 (1178)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHh---cC
Confidence 99999999999999999999999999999999999974 46999999655 57899999999999998874 47
Q ss_pred CceEEEEcCC-ChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHc-CCeEEeecCCCc
Q psy13907 494 QLVAVGVNCL-APHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDT-GVKYVGGCCRTN 569 (698)
Q Consensus 494 ~~~~iGlNC~-~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~-G~~iiGGCCGTt 569 (698)
++++||+||+ ||+.|.++|+.++ ++.|++||||||+|+. .+.| +.+|++|++++++|++. |++|||||||||
T Consensus 226 ~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~--~~~y--d~~p~~~a~~~~~~~~~ggv~IIGGCCGTt 301 (1178)
T TIGR02082 226 GIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNA--FGEY--DLTPDELAKALADFAAEGGLNIVGGCCGTT 301 (1178)
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCC--CCcc--cCCHHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 8899999995 9999999999998 7899999999999983 4545 88999999999999998 599999999999
Q ss_pred hHHHHHHHhccccCCCCCcccccccccCCCCceeeeeeccccccccccCCcccEEE-EeecCCchhhhhhhhhccccccc
Q psy13907 570 ADDMKNVNQVPVKFSITPESLTNARDKFNIPRFRISGHLDSTECSVVRPFTGEIVI-EQTELPIKSVELQLVRVETCGCA 648 (698)
Q Consensus 570 P~hI~al~~~v~~~~~~~~~~~~~~e~~~~~~~~lsG~~~~~~~~~~~p~~~~~~v-Er~nv~~~s~~~~Lir~e~~~~~ 648 (698)
|+||++|++++++.+|++.+.. .+.++.||+ +++.+.+.+++++| ||+|++||..+.++|+.+++..+
T Consensus 302 PeHI~ala~~l~~~~p~~~~~~-------~~~~~~s~~----~~~~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a 370 (1178)
T TIGR02082 302 PDHIRAIAEAVKNIKPRQRPVL-------YEPSRLSGL----EAITIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEA 370 (1178)
T ss_pred HHHHHHHHHHhhcCCCCCCCCc-------ccceeecCc----eEEeecCCCceEEEeeccchhhhHHHHHHHHcCCHHHH
Confidence 9999999999999999765442 456789999 78888999999999 99999999999999996666555
Q ss_pred ccchhhhhhhhhhhhccccccCCC
Q psy13907 649 EGYSRDATEIQNIQIGEGNVFTGI 672 (698)
Q Consensus 649 ~~~~~~~~~iq~~qi~~g~~~~~~ 672 (698)
...| .-|+.+|....++
T Consensus 371 ~~~A-------~~qve~GA~iIDV 387 (1178)
T TIGR02082 371 LDIA-------KQQVENGAQILDI 387 (1178)
T ss_pred HHHH-------HHHHHCCCCEEEE
Confidence 5555 4555555444433
No 4
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=9.9e-71 Score=591.74 Aligned_cols=314 Identities=36% Similarity=0.667 Sum_probs=278.9
Q ss_pred hhhhHHHHHHHHhh-CceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhhcccccC
Q psy13907 261 LSKDLQKINEFILE-NKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQA 339 (698)
Q Consensus 261 f~~~~~~~~~~~~~-~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~a 339 (698)
++.+...+.+++.+ ++++|+||||||+|+++ |++ + +.++|+..+++++||+|+++|++|++||||||+||||++
T Consensus 5 ~~~~~~~~~~~l~~~~~~lilDGgmGT~Le~~-g~~---~-~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a 79 (335)
T PLN02489 5 LPQMSSLLEDLLRQAGGCAVIDGGFATELERH-GAD---L-NDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQA 79 (335)
T ss_pred chhhhHHHHHHHHhcCCEEEEEChHHHHHHhC-CCC---C-CCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEeccccc
Confidence 33344445555433 45999999999999998 987 3 468999999999999999999999999999999999999
Q ss_pred ChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccC---------CccCCCCcEEEEecCCcCCCCCCCCCCCCCCCC
Q psy13907 340 SVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRD---------PAIASRHVRVAGSLGSYGAFLHDGSEYRGDYID 410 (698)
Q Consensus 340 s~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~---------~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~ 410 (698)
|+.++.++ |++.+++.++|++|++|||+|++++.... +...+++++|||||||+|+++++|+||+|+|..
T Consensus 80 ~~~~l~~~-g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~ 158 (335)
T PLN02489 80 TIQGFESR-GLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGP 158 (335)
T ss_pred CHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCcc
Confidence 99999886 99888999999999999999998763210 000135699999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcC-CCeEEEEEEecCCCccCCCCcHHHHHHHHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYA 489 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~-~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~ 489 (698)
.+++++++++|++|+++|+++|||+|++|||+++.|++++++++++.. ++|+||||++.++++|++|+++.++++.+..
T Consensus 159 ~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~ 238 (335)
T PLN02489 159 SVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADS 238 (335)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999754 6999999999999999999999999998843
Q ss_pred hCCCCceEEEEcCCChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccc--cCCChhhHHHHHHHHHHcCCeEEeec
Q psy13907 490 KNPAQLVAVGVNCLAPHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWM--NKDSVPSVDTYVPRWLDTGVKYVGGC 565 (698)
Q Consensus 490 ~~~~~~~~iGlNC~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~--~~~~p~~~a~~~~~~~~~G~~iiGGC 565 (698)
..++++||+||++|+.|.++++.++ .+.|+++|||+|.+++...+.|. ++.+|+.|++++++|++.|++|||||
T Consensus 239 --~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGC 316 (335)
T PLN02489 239 --CKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGC 316 (335)
T ss_pred --cCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeC
Confidence 3578999999999999999999997 67899999999999988778885 45578999999999999999999999
Q ss_pred CCCchHHHHHHHhcccc
Q psy13907 566 CRTNADDMKNVNQVPVK 582 (698)
Q Consensus 566 CGTtP~hI~al~~~v~~ 582 (698)
|||||+||++|++.+++
T Consensus 317 Cgt~P~hI~al~~~l~~ 333 (335)
T PLN02489 317 CRTTPNTIRAISKALSE 333 (335)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999999864
No 5
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.3e-69 Score=577.47 Aligned_cols=297 Identities=41% Similarity=0.743 Sum_probs=271.3
Q ss_pred HHHHHhhCceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhh
Q psy13907 268 INEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQH 347 (698)
Q Consensus 268 ~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~ 347 (698)
+++++.+++++|+||||||+|+++ |++ + ..|+|+..+++++||+|+++|++|++||||||+||||++|+.+|+++
T Consensus 4 ~~~~l~~~~~lilDGgmGT~L~~~-g~~---~-~~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~ 78 (304)
T PRK09485 4 FKELLAQGPVLILDGALATELEAR-GCD---L-NDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAAR 78 (304)
T ss_pred HHHHhccCCEEEEeChHHHHHHHc-CCC---C-CCcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHc
Confidence 566655666999999999999998 987 3 36899999999999999999999999999999999999999999985
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy13907 348 LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEA 427 (698)
Q Consensus 348 ~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~ 427 (698)
|++++++.+||++|++|||+|++++. ..+++|||||||+|++++++++|.|.| .+++++++++|++|+++
T Consensus 79 -g~~~~~~~~l~~~av~lA~~a~~~~~-------~~~~~VaGsiGP~g~~l~~~~~y~g~~--~~~~~~~~~~~~~q~~~ 148 (304)
T PRK09485 79 -GLSEAEAEELIRRSVELAKEARDEFW-------AEKPLVAGSVGPYGAYLADGSEYRGDY--GLSEEELQDFHRPRIEA 148 (304)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHhhc-------cCCceEEEecCCcccccCCCCCCCCCC--CCCHHHHHHHHHHHHHH
Confidence 99778999999999999999998862 125899999999999999999999987 49999999999999999
Q ss_pred HHhCCCCEEEecccCCHHHHHHHHHHHHh-cCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChh
Q psy13907 428 LIQGGIDLLAIETLPAQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPH 506 (698)
Q Consensus 428 L~~~GvDlll~ETi~~~~Eakaa~~a~~~-~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~ 506 (698)
|.++|||+|++||++++.|+++++.++++ ..++|+|+||+++++|+|++|+++.+++..+.+ ...+++||+||++|+
T Consensus 149 l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~--~~~~~~iGiNC~~p~ 226 (304)
T PRK09485 149 LAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAA--SPQVVAVGVNCTAPE 226 (304)
T ss_pred HhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhc--CCCceEEEecCCCHH
Confidence 99999999999999999999999999995 348999999999999999999999999999853 356899999999999
Q ss_pred hhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCchHHHHHHHhccc
Q psy13907 507 YVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPV 581 (698)
Q Consensus 507 ~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~al~~~v~ 581 (698)
+|.++|+.++ .+.|+++|||+|.+++...+.|.++.+++.|++++++|++.|++||||||||||+||++|+++++
T Consensus 227 ~~~~~l~~~~~~~~~pl~~~PNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGttP~hI~al~~~l~ 303 (304)
T PRK09485 227 LVTAAIAALRAVTDKPLVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYAAGARLIGGCCRTTPEDIAALAAALK 303 (304)
T ss_pred HHHHHHHHHHhccCCcEEEECCCCCCCCCCCCcccCCCChHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHHHHHHhh
Confidence 9999999997 57899999999999987777786655566899999999999999999999999999999999875
No 6
>KOG1579|consensus
Probab=100.00 E-value=3.9e-69 Score=555.46 Aligned_cols=297 Identities=38% Similarity=0.686 Sum_probs=273.5
Q ss_pred hhCceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCH
Q psy13907 273 LENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSE 352 (698)
Q Consensus 273 ~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~ 352 (698)
..++++|+||||||+|+|+ |+++ .+.|+|+...++++||+|+++|++||+||||||+|||||++...+.++ .+.
T Consensus 15 ~~~~vlvlDGG~~t~Ler~-g~~~---~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~--~~~ 88 (317)
T KOG1579|consen 15 NTGRVLVLDGGFGTQLERR-GYDK---VDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY--VEE 88 (317)
T ss_pred ccCcEEEEeChHHHHHHhh-cccc---cCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh--hhh
Confidence 5678999999999999999 8883 356999999999999999999999999999999999999999999986 458
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy13907 353 DQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGG 432 (698)
Q Consensus 353 ~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~G 432 (698)
++..++++..+++|+.|++++..++ -+|+||+||+|+++++|+||+|+|.+++++++++++|++|++.|.++|
T Consensus 89 ~~~~el~~~s~~~a~~Are~~~~~~-------~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~g 161 (317)
T KOG1579|consen 89 EELIELYEKSVELADLARERLGEET-------GYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAG 161 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-------ceeeeecccccceecCCcccccccccccCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999986543 299999999999999999999999999999999999999999999999
Q ss_pred CCEEEecccCCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHH
Q psy13907 433 IDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESL 511 (698)
Q Consensus 433 vDlll~ETi~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~ 511 (698)
||+|+|||||+..||+|+++++++. +++|+||||||.|+|+++||+++++++..+.+ +.++++|||||+.|..+.+.
T Consensus 162 vD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~--~~~~~~IGvNC~~~~~~~~~ 239 (317)
T KOG1579|consen 162 VDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKD--GINLLGIGVNCVSPNFVEPL 239 (317)
T ss_pred CCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhcc--CCceEEEEeccCCchhccHH
Confidence 9999999999999999999999986 78999999999999999999999999986633 35799999999999999998
Q ss_pred HHHhc---CCCCEEEecCCCCCcCCCCcccccCC-ChhhHHHHHHHHHHcCCeEEeecCCCchHHHHHHHhccccCC
Q psy13907 512 LTSAG---RDVPLLCCPNSGETFDPGQRIWMNKD-SVPSVDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKFS 584 (698)
Q Consensus 512 l~~l~---~~~pl~~yPNaG~~~d~~~g~~~~~~-~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~al~~~v~~~~ 584 (698)
+++|. +..|++||||+|..+|...|.|.... ..++|..++++|.+.||+||||||||||.||++|+++++++.
T Consensus 240 ~~~L~~~~~~~~llvYPNsGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v~~~~ 316 (317)
T KOG1579|consen 240 LKELMAKLTKIPLLVYPNSGEVYDNEKGGWIPTPFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAVKKYR 316 (317)
T ss_pred HHHHhhccCCCeEEEecCCCCCCccccCcccCCCcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHhhccc
Confidence 88886 78999999999999998999995432 345688999999999999999999999999999999998765
No 7
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-65 Score=522.07 Aligned_cols=291 Identities=37% Similarity=0.685 Sum_probs=269.3
Q ss_pred HhhCceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCC
Q psy13907 272 ILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLS 351 (698)
Q Consensus 272 ~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~ 351 (698)
+....|+|+||||+|+|+++ |.+ + .+|+||...+++.||+|+++|.+|++||||||+|+|||+++..+++. .+
T Consensus 5 l~~~~vliLDGG~~tELe~r-G~~---l-~~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~--~~ 77 (300)
T COG2040 5 LDTLSVLILDGGLATELERR-GCD---L-SDPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER--VS 77 (300)
T ss_pred cccCCEEEecCchhHHHHhc-CCC---C-CchhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh--cc
Confidence 34566999999999999999 998 4 46899999999999999999999999999999999999999999985 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q psy13907 352 EDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQG 431 (698)
Q Consensus 352 ~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~ 431 (698)
+++.+.+++.+++|||+|++.+... ...|||||||+|+++.+ ||+|+|. .+.|.+++||++|+++|.++
T Consensus 78 ~~~~~~l~~~sv~la~~ard~~g~~-------~~~iagsiGP~ga~~a~--Ey~g~Y~--~~~d~~~~fh~~rie~l~~a 146 (300)
T COG2040 78 EDEAKQLIRRSVELARAARDAYGEE-------NQNIAGSLGPYGAALAD--EYRGDYG--ASQDALYKFHRPRIEALNEA 146 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccc-------ccccceeccchhhhcCh--hhcCccC--ccHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999998543 34589999999999987 9999995 67788899999999999999
Q ss_pred CCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHH
Q psy13907 432 GIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESL 511 (698)
Q Consensus 432 GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~ 511 (698)
|||+|.+||+|+..|++|++.+++++ ++|+|||||+.|+++|++|+++++++..+.. ..++.++||||++|+++.++
T Consensus 147 g~Dlla~ETip~i~Ea~Aiv~l~~~~-s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~--~~~iaa~gvNC~~p~~~~a~ 223 (300)
T COG2040 147 GADLLACETLPNITEAEAIVQLVQEF-SKPAWISFTLNDDTRLRDGTPLSEAAAILAG--LPNIAALGVNCCHPDHIPAA 223 (300)
T ss_pred CCcEEeecccCChHHHHHHHHHHHHh-CCceEEEEEeCCCCccCCCccHHHHHHHHhc--CcchhheeeccCChhhhHHH
Confidence 99999999999999999999999997 9999999999999999999999999998854 36889999999999999999
Q ss_pred HHHhc---CCCCEEEecCCCCCcCCCCcccc-cCCChhhHHHHHHHHHHcCCeEEeecCCCchHHHHHHHhccccC
Q psy13907 512 LTSAG---RDVPLLCCPNSGETFDPGQRIWM-NKDSVPSVDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKF 583 (698)
Q Consensus 512 l~~l~---~~~pl~~yPNaG~~~d~~~g~~~-~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~al~~~v~~~ 583 (698)
++.++ ...|++||||+|+.+|+....|+ ++..++.|...+++|++.|++||||||+|+|.||++|++++++.
T Consensus 224 i~~l~~~~~~~piivYPNSGe~~d~~~k~w~~p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ei~~~~~~~ 299 (300)
T COG2040 224 IEELSKLLTGKPIIVYPNSGEQYDPAGKTWHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAEIAKALKKA 299 (300)
T ss_pred HHHHHhcCCCCceEEcCCcccccCcCCCcCCCCCCchhHHHHHHHHHHhcccceeeeccCCChHHHHHHHHHHhcc
Confidence 99984 88999999999999998777787 67788999999999999999999999999999999999999864
No 8
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=2.4e-64 Score=541.66 Aligned_cols=302 Identities=22% Similarity=0.292 Sum_probs=258.3
Q ss_pred HHHHHhhCceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhh
Q psy13907 268 INEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQH 347 (698)
Q Consensus 268 ~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~ 347 (698)
+.+.+.+++++|+||||||+|+++ |++ +. .+ +++|++++||+|++||++|++||||||+||||++|+.++..+
T Consensus 5 ~~~~l~~~~ililDGgmGTeL~~~-G~~---~~-~~--~~lwsi~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~ 77 (336)
T PRK07534 5 LSDLLAERGVLLADGATGTNLFNM-GLE---SG-EA--PELWNEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLH 77 (336)
T ss_pred HHHHHhcCCEEEEECHHHHHHHHC-CCC---CC-CC--chHhcccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhc
Confidence 455555667999999999999998 887 32 21 244459999999999999999999999999999999888764
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy13907 348 LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEA 427 (698)
Q Consensus 348 ~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~ 427 (698)
|. ++++.++|++|++|||+|++++ +++++|||||||+|++++|+ +.+++++++++|++|++.
T Consensus 78 -~~-~~~~~~l~~~av~lAr~a~~~~--------~~~~~VaGsIGP~g~~l~~~--------~~~~~~e~~~~~~~qi~~ 139 (336)
T PRK07534 78 -DA-QDRVHELNRAAAEIAREVADKA--------GRKVIVAGSVGPTGEIMEPM--------GALTHALAVEAFHEQAEG 139 (336)
T ss_pred -Cc-HHHHHHHHHHHHHHHHHHHHhc--------CCccEEEEecCCCccccCCC--------CCCCHHHHHHHHHHHHHH
Confidence 65 8999999999999999999874 35689999999999988763 347899999999999999
Q ss_pred HHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCC-Chh
Q psy13907 428 LIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL-APH 506 (698)
Q Consensus 428 L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~-~p~ 506 (698)
|.++|||+|++|||+++.|+++++.++++. ++|||+||++.++|+|.+|+++.++++.+.. ...++++||+||+ ||+
T Consensus 140 l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~-~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~-~~~~~~avGvNC~~gp~ 217 (336)
T PRK07534 140 LKAGGADVLWVETISAPEEIRAAAEAAKLA-GMPWCGTMSFDTAGRTMMGLTPADLADLVEK-LGEPPLAFGANCGVGAS 217 (336)
T ss_pred HHhCCCCEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEEEECCCCeeCCCCcHHHHHHHHHh-cCCCceEEEecCCCCHH
Confidence 999999999999999999999999999984 8999999999999999999999999999853 3456799999997 699
Q ss_pred hhHHHHHHh-c--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCchHHHHHHHhccccC
Q psy13907 507 YVESLLTSA-G--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKF 583 (698)
Q Consensus 507 ~~~~~l~~l-~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~al~~~v~~~ 583 (698)
+|.+.+..+ . .+.|+++|||+|.|.. .++.+.++.+|+.|++++++|++.|++||||||||||+||++|++.+++.
T Consensus 218 ~~~~~l~~~~~~~~~~pl~vyPNaG~p~~-~~~~~~~~~~p~~~~~~~~~~~~~Ga~iIGGCCGTtP~hI~~la~~l~~~ 296 (336)
T PRK07534 218 DLLRTVLGFTAQGPERPIIAKGNAGIPKY-VDGHIHYDGTPELMAEYAVLARDAGARIIGGCCGTMPEHLAAMRAALDAR 296 (336)
T ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCccc-CCCccccCCCHHHHHHHHHHHHHcCCcEEeeecCCCHHHHHHHHHHHccC
Confidence 886655544 3 4789999999998531 23456668899999999999999999999999999999999999999988
Q ss_pred CCCCcc-cccccccC
Q psy13907 584 SITPES-LTNARDKF 597 (698)
Q Consensus 584 ~~~~~~-~~~~~e~~ 597 (698)
+|+..+ .+++.|++
T Consensus 297 ~~~~~~~~~~~~~~~ 311 (336)
T PRK07534 297 PRGPRPSLETIVERL 311 (336)
T ss_pred CCCCCCCHHHHHHHh
Confidence 887643 33455553
No 9
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=1.4e-65 Score=547.79 Aligned_cols=288 Identities=40% Similarity=0.719 Sum_probs=214.9
Q ss_pred eEEEecccccccccccCCCCcCcCCCcccc-------hhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcC
Q psy13907 277 LYLIDGGFSSQLSKHVGEDNVTEKDNPLWC-------SAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLG 349 (698)
Q Consensus 277 ~~i~dG~~gt~l~~~~g~~~~~~~~~~lws-------~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g 349 (698)
|+|+||||||+|+++ |++ . .+++|| +.+++++|++|+++|++|++||||||+||||++|+.++.++ |
T Consensus 1 ililDGgmGT~L~~~-g~~---~-~~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~-g 74 (305)
T PF02574_consen 1 ILILDGGMGTELERR-GLD---L-NDPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEY-G 74 (305)
T ss_dssp -CTT--EEHHCCHHH-HHH---H-CTSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGG-T
T ss_pred CEEeehhhHHHHHhC-CcC---c-cccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhc-C
Confidence 578999999999999 887 2 467776 45889999999999999999999999999999999999986 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy13907 350 LSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALI 429 (698)
Q Consensus 350 ~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~ 429 (698)
++.+.++++|++|+++||+|++.|.. +++++|||||||+|++++ |++|+|.| ..++++++++|++|++.|.
T Consensus 75 ~~~~~~~~l~~~av~lA~~a~~~~~~------~~~~~VaGsiGP~ga~l~-g~~y~~~~--~~~~~~~~~~~~~q~~~l~ 145 (305)
T PF02574_consen 75 LSDEEAEELNRAAVELAREAADEYGS------GRKVLVAGSIGPYGAYLS-GSEYPGDY--GLSFEELRDFHREQAEALA 145 (305)
T ss_dssp -GGGCHHHHHHHHHHHHHHHHTT---------TT-SEEEEEEE--S---------CTTC--TT-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccC------CCccEEEEEcccccccch-hhhccccc--cccHHHHHHHHHHHHHHHH
Confidence 95555699999999999999998742 346999999999999999 99999976 5899999999999999999
Q ss_pred hCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHh---CCCCceEEEEcCCChh
Q psy13907 430 QGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK---NPAQLVAVGVNCLAPH 506 (698)
Q Consensus 430 ~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~---~~~~~~~iGlNC~~p~ 506 (698)
++|||+|++|||+++.|++++++++++..++|+||||++.+++++.+|+++.+++..+.+. ...++++||+||+++.
T Consensus 146 ~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC~~~~ 225 (305)
T PF02574_consen 146 DAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNCTSPP 225 (305)
T ss_dssp HTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEESSS-H
T ss_pred hcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCCCCcH
Confidence 9999999999999999999999999997789999999999999999999998777766542 1368999999998777
Q ss_pred hhHHHHHHhc---CCCCEEEecCCCCCcCCCCcccccCCChhh----HHHHHHHHHHcCCeEEeecCCCchHHHHHHHhc
Q psy13907 507 YVESLLTSAG---RDVPLLCCPNSGETFDPGQRIWMNKDSVPS----VDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQV 579 (698)
Q Consensus 507 ~~~~~l~~l~---~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~----~a~~~~~~~~~G~~iiGGCCGTtP~hI~al~~~ 579 (698)
.+...+.++. .+.|+++|||+|.+++.. ..| ..+|+. |++++++|++.|++||||||||||+||++|++.
T Consensus 226 ~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~ 302 (305)
T PF02574_consen 226 EIMKALLELMSATHDIPLIVYPNSGEPYDVG-KVW--SETPEDFAPEWAEFVKEWVEAGARIIGGCCGTTPEHIRALAKA 302 (305)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--SBS-TTSS-GGS--TTTTTSHGGG-HHHHHHHHHHHHCEE---TT--HHHHHHHHHH
T ss_pred HHHhHHHHHHhccCCceEEEecCCCCCcccc-ccc--ccchhhhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHH
Confidence 6665555543 489999999999999765 457 444444 555999999999999999999999999999999
Q ss_pred ccc
Q psy13907 580 PVK 582 (698)
Q Consensus 580 v~~ 582 (698)
+++
T Consensus 303 l~~ 305 (305)
T PF02574_consen 303 LDK 305 (305)
T ss_dssp TH-
T ss_pred hcC
Confidence 864
No 10
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=9.9e-59 Score=535.46 Aligned_cols=285 Identities=25% Similarity=0.405 Sum_probs=253.4
Q ss_pred HHHHHhhCceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhh
Q psy13907 268 INEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQH 347 (698)
Q Consensus 268 ~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~ 347 (698)
+.+. ++++++|+||||||+|+++ |++ +. .+ .+.+++++||+|+++|++|++||||||+||||++|+.+|+++
T Consensus 4 ~~~~-l~~~~lilDGgmGT~L~~~-G~~---~~-~~--~~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~ 75 (612)
T PRK08645 4 LLER-LKERVLIADGAMGTLLYSR-GVP---LD-RC--FEELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRY 75 (612)
T ss_pred HHHH-hcCCeEEEECHHHHHHHHc-CCC---CC-CC--hHHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhc
Confidence 3443 5788999999999999998 887 32 33 488999999999999999999999999999999999999986
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy13907 348 LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEA 427 (698)
Q Consensus 348 ~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~ 427 (698)
|+ .+++.++|++|++|||+|++. +++|||||||||++ ++| +.+|+++++++|++|++.
T Consensus 76 -g~-~~~~~~l~~~av~lAr~a~~~-----------~~~VagsiGP~g~~--------~~~-~~~~~~~~~~~~~~~~~~ 133 (612)
T PRK08645 76 -GL-EDKVKEINRAAVRLAREAAGD-----------DVYVAGTIGPIGGR--------GPL-GDISLEEIRREFREQIDA 133 (612)
T ss_pred -Cc-hHHHHHHHHHHHHHHHHHhcC-----------CCeEEEeCCCCCCC--------CCC-CCCCHHHHHHHHHHHHHH
Confidence 99 788999999999999999862 48999999999974 344 358999999999999999
Q ss_pred HHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCC-Chh
Q psy13907 428 LIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL-APH 506 (698)
Q Consensus 428 L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~-~p~ 506 (698)
|.++|||+|++||++++.|+++++.++++..++|+|+||++.++++|++|+++.++++.+.. .++++||+||+ +|+
T Consensus 134 l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~---~~~~avGiNC~~~p~ 210 (612)
T PRK08645 134 LLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKELVA---AGADVVGLNCGLGPY 210 (612)
T ss_pred HHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHHHh---CCCCEEEecCCCCHH
Confidence 99999999999999999999999999998656999999999999999999999999999954 45899999997 699
Q ss_pred hhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCchHHHHHHHhccccCC
Q psy13907 507 YVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKFS 584 (698)
Q Consensus 507 ~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~al~~~v~~~~ 584 (698)
.|.++|+.+. .+.|+++|||+|.|.......| ++.+|+.|++++++|++.|++||||||||||+||++|++++++..
T Consensus 211 ~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~-~~~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~~~~ 289 (612)
T PRK08645 211 HMLEALERIPIPENAPLSAYPNAGLPEYVDGRYV-YSANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALKGLK 289 (612)
T ss_pred HHHHHHHHHHhccCceEEEEECCCCCCCCCCccc-cCCCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhccCC
Confidence 9999999997 5789999999998753222222 367899999999999999999999999999999999999999877
Q ss_pred CC
Q psy13907 585 IT 586 (698)
Q Consensus 585 ~~ 586 (698)
|.
T Consensus 290 ~~ 291 (612)
T PRK08645 290 PV 291 (612)
T ss_pred Cc
Confidence 73
No 11
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-40 Score=337.21 Aligned_cols=220 Identities=25% Similarity=0.300 Sum_probs=194.1
Q ss_pred CHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHH
Q psy13907 2 SVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELID 81 (698)
Q Consensus 2 s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~ 81 (698)
+...+++ |+++ +++++||++|++|||+|++++. + .+++||||||||++..+.. +|++ .++++++++
T Consensus 78 t~i~lad-y~le-d~v~~in~~aa~iAR~aA~~~~--~----~k~rfVaGsiGPt~k~~~~----~~~~--~v~fd~l~~ 143 (311)
T COG0646 78 TTIKLAD-YGLE-DKVYEINQKAARIARRAADEAG--D----PKPRFVAGSIGPTNKTLSI----SPDF--AVTFDELVE 143 (311)
T ss_pred chhhHhh-hChH-HHHHHHHHHHHHHHHHHHhhcC--C----CCceEEEEeccCcCCcCCc----CCcc--cccHHHHHH
Confidence 5667888 7997 8999999999999999998763 1 2589999999999986653 3432 589999999
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcC-----CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCC
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYP-----GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ 156 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~-----~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~ 156 (698)
.|++|++.|+++|||+|+|||++|+.|+|+++.++++.. .+|+|+|.|+.+.|+|++|+++++++..+. +.+
T Consensus 144 ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~---~~~ 220 (311)
T COG0646 144 AYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLE---HLG 220 (311)
T ss_pred HHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhh---ccC
Confidence 999999999999999999999999999999999999753 499999999999999999999999999874 578
Q ss_pred ceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCce
Q psy13907 157 LVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFE 236 (698)
Q Consensus 157 ~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~ 236 (698)
+++||+||.. ||++|.++++++.+. + +.+||++||||||+
T Consensus 221 ~~~vGlNCa~-----------------------------Gp~~m~~~l~~ls~~------~-----~~~vs~~PNAGLP~ 260 (311)
T COG0646 221 PDAVGLNCAL-----------------------------GPDEMRPHLRELSRI------A-----DAFVSVYPNAGLPN 260 (311)
T ss_pred CcEEeecccc-----------------------------CHHHHHHHHHHHHhc------c-----CceEEEeCCCCCCc
Confidence 9999999999 999999999999987 5 89999999999999
Q ss_pred eecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc
Q psy13907 237 TYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH 291 (698)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~ 291 (698)
..+++++ |+++|+.++. .+.+|..++.+.|++|||||+++..
T Consensus 261 ~~g~~~~---Y~~~p~~~a~----------~~~~f~~~g~vnIvGGCCGTTPeHI 302 (311)
T COG0646 261 AFGERAV---YDLTPEYMAE----------ALAEFAEEGGVNIVGGCCGTTPEHI 302 (311)
T ss_pred ccCCccc---cCCCHHHHHH----------HHHHHHHhCCceeeccccCCCHHHH
Confidence 9999886 9988877774 4566666667999999999998754
No 12
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=1.5e-38 Score=342.31 Aligned_cols=235 Identities=32% Similarity=0.463 Sum_probs=191.2
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccC---------CccCCCCeEEEEecCCcCCCCCCCCCccCCCC
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRD---------PAIASRHVRVAGSLGSYGAFLHDGSEYRGDYI 71 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~---------~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~ 71 (698)
+|..+|.+ +|++.+++++||++||++||+|++++..+. ....+++++|||||||+|+++++|+||+|+|+
T Consensus 79 a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~ 157 (335)
T PLN02489 79 ATIQGFES-RGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYG 157 (335)
T ss_pred cCHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCc
Confidence 46778877 799878999999999999999998763210 01123579999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 72 DSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 72 ~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~-~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
+++++++++++|++|+++|+++|||+|+|||||++.|++++++++++.. ++|+|+||++++++++++|+++.+++..+.
T Consensus 158 ~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~ 237 (335)
T PLN02489 158 PSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIAD 237 (335)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHH
Confidence 6689999999999999999999999999999999999999999999853 699999999999999999999999998874
Q ss_pred hhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeec
Q psy13907 151 AKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKP 230 (698)
Q Consensus 151 ~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 230 (698)
+..++++||+||+ ||.+|.++++++... + ..||++||
T Consensus 238 --~~~~~~~iGiNC~------------------------------~p~~~~~~l~~l~~~------~-----~~pl~vyP 274 (335)
T PLN02489 238 --SCKKVVAVGINCT------------------------------PPRFIHGLILSIRKV------T-----SKPIVVYP 274 (335)
T ss_pred --hcCCceEEEecCC------------------------------CHHHHHHHHHHHHhh------c-----CCcEEEEC
Confidence 2347899999995 688888888888765 4 67999999
Q ss_pred CCCCceee-cCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc
Q psy13907 231 NRSLFETY-HGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH 291 (698)
Q Consensus 231 nag~p~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~ 291 (698)
|+|+|... .+... ..|+.++ ++|.+.+. +. .+.++.|++|||||.++..
T Consensus 275 NaG~~~~~~~~~~~-~~~~~~~-------~~~~~~~~---~~-~~~Ga~iIGGCCgt~P~hI 324 (335)
T PLN02489 275 NSGETYDGEAKEWV-ESTGVSD-------EDFVSYVN---KW-RDAGASLIGGCCRTTPNTI 324 (335)
T ss_pred CCCCCCCCccCccc-CCCCCCH-------HHHHHHHH---HH-HHCCCcEEeeCCCCCHHHH
Confidence 99998322 12111 1344333 34555443 33 4678999999999987654
No 13
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1e-37 Score=332.64 Aligned_cols=225 Identities=39% Similarity=0.532 Sum_probs=188.6
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHH
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELI 80 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~ 80 (698)
++..+|.+ +|++.+++++||++||+|||+|++++. ..+++|||||||+|++++++++|+|+|+ +++++++
T Consensus 70 a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~-------~~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~ 139 (304)
T PRK09485 70 ATFQGFAA-RGLSEAEAEELIRRSVELAKEARDEFW-------AEKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQ 139 (304)
T ss_pred cCHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhhc-------cCCceEEEecCCcccccCCCCCCCCCCC--CCHHHHH
Confidence 46778877 799878999999999999999998641 1258999999999999999999999984 8999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 159 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~a 159 (698)
++|++|+++|.++|||+|+|||||++.|++++++++++. +++|+|+||+|+++|+|++|+++++++..+. ....+++
T Consensus 140 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~--~~~~~~~ 217 (304)
T PRK09485 140 DFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLA--ASPQVVA 217 (304)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHh--cCCCceE
Confidence 999999999999999999999999999999999999953 4899999999999999999999999999885 2346899
Q ss_pred EEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCceeec
Q psy13907 160 VGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYH 239 (698)
Q Consensus 160 IGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~~~ 239 (698)
||+||+ ||.+|.++|+++... . +.|++++||+|+|....
T Consensus 218 iGiNC~------------------------------~p~~~~~~l~~~~~~------~-----~~pl~~~PNaG~~~~~~ 256 (304)
T PRK09485 218 VGVNCT------------------------------APELVTAAIAALRAV------T-----DKPLVVYPNSGEVYDAV 256 (304)
T ss_pred EEecCC------------------------------CHHHHHHHHHHHHhc------c-----CCcEEEECCCCCCCCCC
Confidence 999996 678888888888665 3 57999999999997655
Q ss_pred CeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc
Q psy13907 240 GVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH 291 (698)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~ 291 (698)
++.. .++ ..+++|.+.+.. ..+.++.|++|||||.++..
T Consensus 257 ~~~~--~~~-------~~~~~~~~~~~~----~~~~G~~iiGGCCGttP~hI 295 (304)
T PRK09485 257 TKTW--HGP-------ADDASLGELAPE----WYAAGARLIGGCCRTTPEDI 295 (304)
T ss_pred CCcc--cCC-------CChHHHHHHHHH----HHHcCCeEEeeCCCCCHHHH
Confidence 5543 122 112366665533 35668999999999987653
No 14
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=1e-36 Score=367.31 Aligned_cols=270 Identities=21% Similarity=0.245 Sum_probs=214.8
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCC--CCCCCCccCCCCCCCCHHH
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAF--LHDGSEYRGDYIDSTTPQE 78 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~--l~~gseY~g~y~~~~s~ee 78 (698)
++...|.+ ||++ +++++||++|++|||+|++++..++ .++++||||||||+|.+ ++|+++|.| |+ ++++++
T Consensus 89 a~~~~L~~-ygl~-~~~~eln~~av~LAreAa~~~~~~~---~~~~~~VAGSIGP~g~~~sl~p~~e~pg-~~-~it~de 161 (1229)
T PRK09490 89 ATTIAQAD-YGME-SLVYELNFAAARLAREAADEWTAKT---PDKPRFVAGVLGPTNRTASISPDVNDPG-FR-NVTFDE 161 (1229)
T ss_pred CCHHHHhh-CChH-HHHHHHHHHHHHHHHHHHHHhhhcc---CCCceEEEEecCCCCcccccCCCccccc-cc-CCCHHH
Confidence 45677877 7997 8999999999999999998764322 24579999999999965 559999988 54 699999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-----CCCeEEEEEEEcC-CCccCCCCCHHHHHHHHHhh
Q psy13907 79 LIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-----PGLKAWISFSCKD-EKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 79 l~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-----~~~Pv~iSft~~~-~g~l~~G~~~~~~~~~l~~~ 152 (698)
++++|++|+++|+++|||+|+||||+++.|+++++.++++. .++|+|+||||.+ +|+|++|+++++++..+.
T Consensus 162 l~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~-- 239 (1229)
T PRK09490 162 LVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLR-- 239 (1229)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHh--
Confidence 99999999999999999999999999999999999999874 5799999999975 799999999999988773
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCC
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNR 232 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pna 232 (698)
+.++++||+||+. ||.+|.+++++|... + +.||+++|||
T Consensus 240 -~~~~~avGlNCs~-----------------------------GP~~m~~~l~~l~~~------~-----~~pi~vyPNA 278 (1229)
T PRK09490 240 -HAKPLSIGLNCAL-----------------------------GADELRPYVEELSRI------A-----DTYVSAHPNA 278 (1229)
T ss_pred -cCCCCEEEEcCCC-----------------------------cHHHHHHHHHHHHHh------c-----CCeEEEEeCC
Confidence 5789999999999 999999999999876 5 7899999999
Q ss_pred CCceeecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEeccccccccccc-------CCCCcCc-CCCc-
Q psy13907 233 SLFETYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKHV-------GEDNVTE-KDNP- 303 (698)
Q Consensus 233 g~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~~-------g~~~~~~-~~~~- 303 (698)
|+|+..+ .|+++|+.++ .. +.++...+.+.|++|||||+++... +...... ...+
T Consensus 279 GlP~~~~------~yd~tPe~~a-------~~---~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~~ 342 (1229)
T PRK09490 279 GLPNAFG------EYDETPEEMA-------AQ---IGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVA 342 (1229)
T ss_pred CCCCCCC------CCCCCHHHHH-------HH---HHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCCCcCcc
Confidence 9998543 4987765544 33 3455444449999999999986532 1110000 0000
Q ss_pred c------------------------------cchhhcccChHHHHHHHHHHHHHhcchhhccc
Q psy13907 304 L------------------------------WCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNT 336 (698)
Q Consensus 304 l------------------------------ws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNT 336 (698)
. +...+.-.+++.+.+.-++-+++|||||-.|-
T Consensus 343 ~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~ 405 (1229)
T PRK09490 343 CRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINM 405 (1229)
T ss_pred eeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 0 11222225667777888888999999999983
No 15
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=1.2e-35 Score=319.70 Aligned_cols=217 Identities=24% Similarity=0.244 Sum_probs=179.2
Q ss_pred CHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHH
Q psy13907 2 SVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELID 81 (698)
Q Consensus 2 s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~ 81 (698)
|...|.. +|. .+++++||++||+|||+|++++ +++++|||||||+|+++.|+ .+++.+++++
T Consensus 70 s~~~l~~-~~~-~~~~~~l~~~av~lAr~a~~~~--------~~~~~VaGsIGP~g~~l~~~--------~~~~~~e~~~ 131 (336)
T PRK07534 70 TAARLKL-HDA-QDRVHELNRAAAEIAREVADKA--------GRKVIVAGSVGPTGEIMEPM--------GALTHALAVE 131 (336)
T ss_pred CHHHHHh-cCc-HHHHHHHHHHHHHHHHHHHHhc--------CCccEEEEecCCCccccCCC--------CCCCHHHHHH
Confidence 4445544 454 4889999999999999999742 35689999999999987653 2467889999
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEE
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVG 161 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIG 161 (698)
+|++|+++|.++|||+|+|||||++.|++++++++++ .++|+|+||+++++|+|.+|+++++++..+.. ...++++||
T Consensus 132 ~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~-~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~-~~~~~~avG 209 (336)
T PRK07534 132 AFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKL-AGMPWCGTMSFDTAGRTMMGLTPADLADLVEK-LGEPPLAFG 209 (336)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHH-cCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh-cCCCceEEE
Confidence 9999999999999999999999999999999999998 58999999999999999999999999998853 234679999
Q ss_pred EcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCceeecCe
Q psy13907 162 VNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGV 241 (698)
Q Consensus 162 iNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~~~~~ 241 (698)
+||++ ||.+|++.+.++... .+ ..||++|||||+|...+++
T Consensus 210 vNC~~-----------------------------gp~~~~~~l~~~~~~-----~~-----~~pl~vyPNaG~p~~~~~~ 250 (336)
T PRK07534 210 ANCGV-----------------------------GASDLLRTVLGFTAQ-----GP-----ERPIIAKGNAGIPKYVDGH 250 (336)
T ss_pred ecCCC-----------------------------CHHHHHHHHHHHHHh-----cC-----CCeEEEEcCCCCcccCCCc
Confidence 99999 999998887776542 03 5799999999999887776
Q ss_pred eeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc
Q psy13907 242 FVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH 291 (698)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~ 291 (698)
.+ |+.++ ++|..... + ....++.|++|||||.++..
T Consensus 251 ~~---~~~~p-------~~~~~~~~---~-~~~~Ga~iIGGCCGTtP~hI 286 (336)
T PRK07534 251 IH---YDGTP-------ELMAEYAV---L-ARDAGARIIGGCCGTMPEHL 286 (336)
T ss_pred cc---cCCCH-------HHHHHHHH---H-HHHcCCcEEeeecCCCHHHH
Confidence 53 77444 35555443 3 35778999999999988654
No 16
>KOG1579|consensus
Probab=100.00 E-value=1.4e-35 Score=306.67 Aligned_cols=225 Identities=32% Similarity=0.464 Sum_probs=185.3
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHH
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELI 80 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~ 80 (698)
+|.+++.++ .+.++..++++..+++|+.|++++..+. -||+|||||+|+++++|+||+|.|++..++++++
T Consensus 77 as~~~~~~~--~~~~~~~el~~~s~~~a~~Are~~~~~~-------~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~ 147 (317)
T KOG1579|consen 77 ASSDGFEEY--VEEEELIELYEKSVELADLARERLGEET-------GYVAGSIGPYGATLADGSEYTGIYGDNVEFEELY 147 (317)
T ss_pred ecchHHhhh--hhhHHHHHHHHHHHHHHHHHHHHhcccc-------ceeeeecccccceecCCcccccccccccCHHHHH
Confidence 466778774 4457889999999999999998774422 2999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 159 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~a 159 (698)
+||++|++.|.++|||+|+|||+|+..|++++++++++. +++|+|||||+.+.|++++|+++++++..+. ...++.+
T Consensus 148 ~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~--~~~~~~~ 225 (317)
T KOG1579|consen 148 DFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLK--DGINLLG 225 (317)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhc--cCCceEE
Confidence 999999999999999999999999999999999999997 8899999999999999999999999998663 2336999
Q ss_pred EEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCC--Ccee
Q psy13907 160 VGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRS--LFET 237 (698)
Q Consensus 160 IGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag--~p~~ 237 (698)
|||||++|..+..+++.+ ... ++ ..||.||||+| |+..
T Consensus 226 IGvNC~~~~~~~~~~~~L------------------------------~~~-----~~-----~~~llvYPNsGe~yd~~ 265 (317)
T KOG1579|consen 226 IGVNCVSPNFVEPLLKEL------------------------------MAK-----LT-----KIPLLVYPNSGEVYDNE 265 (317)
T ss_pred EEeccCCchhccHHHHHH------------------------------hhc-----cC-----CCeEEEecCCCCCCccc
Confidence 999999955544444333 321 13 78999999999 7775
Q ss_pred ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEeccccccccc
Q psy13907 238 YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSK 290 (698)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~ 290 (698)
.++ |..+|..+.+ .+.+.+...+.++.|++|||+|++..
T Consensus 266 ~g~------~~~~~~~~~~--------~~~~~~~~~~lGv~iIGGCCrt~P~~ 304 (317)
T KOG1579|consen 266 KGG------WIPTPFGLEP--------WQTYVKKAIDLGVRIIGGCCRTTPKH 304 (317)
T ss_pred cCc------ccCCCcccch--------HHHHHHHHHhcccceeCcccCCChHH
Confidence 542 6656555443 23344445677999999999997643
No 17
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=2.1e-35 Score=357.38 Aligned_cols=269 Identities=19% Similarity=0.210 Sum_probs=211.6
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCC--CCCCCccCCCCCCCCHHH
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFL--HDGSEYRGDYIDSTTPQE 78 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l--~~gseY~g~y~~~~s~ee 78 (698)
+|..+|.+ ||++ +++++||++|++|||+|++++.. . .+++++|||||||+|.++ .|+++| |.|. ++++++
T Consensus 74 a~~~~L~~-yg~~-~~~~eln~~av~lAr~Aa~~~~~-~---~~~~~~VAGsIGP~g~~~~lgp~~~~-~~~~-~~t~de 145 (1178)
T TIGR02082 74 STTISQAD-YDLE-DLIYDLNFKGAKLARAVADEFTL-T---PEKPRFVAGSMGPTNKTATLSPDVER-PGFR-NVTYDE 145 (1178)
T ss_pred CCHHHHhh-CCHH-HHHHHHHHHHHHHHHHHHHhhcc-c---CCCceEEEEEeCCCCCCccCCCcccc-CccC-CCCHHH
Confidence 46677877 7987 79999999999999999987632 1 235699999999999854 455455 4475 689999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-----CCCeEEEE-EEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 79 LIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-----PGLKAWIS-FSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 79 l~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-----~~~Pv~iS-ft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
++++|++|+++|+++|||+|+||||+++.|+++++.++++. .++|||+| ++++++|+|++|+++++++..+.
T Consensus 146 l~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~-- 223 (1178)
T TIGR02082 146 LVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLE-- 223 (1178)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHh--
Confidence 99999999999999999999999999999999999999974 57999999 44567899999999999998774
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCC
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNR 232 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pna 232 (698)
+.++++||+||+. ||.+|.+++++|... + ..||+++|||
T Consensus 224 -~~~~~avGlNCs~-----------------------------gP~~m~~~l~~l~~~------~-----~~pi~vyPNA 262 (1178)
T TIGR02082 224 -HAGIDMIGLNCAL-----------------------------GPDEMRPHLKHLSEH------A-----EAYVSCHPNA 262 (1178)
T ss_pred -cCCCCEEEeCCCC-----------------------------CHHHHHHHHHHHHHh------c-----CceEEEEeCC
Confidence 5789999999999 999999999999887 5 6899999999
Q ss_pred CCceeecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEeccccccccccc-------CCCCcCc-CCCcc
Q psy13907 233 SLFETYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKHV-------GEDNVTE-KDNPL 304 (698)
Q Consensus 233 g~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~~-------g~~~~~~-~~~~l 304 (698)
|+|+..+ .|+++|+.++. .+.++...+++.|++|||||+++.-. +...... ...+.
T Consensus 263 GlP~~~~------~yd~~p~~~a~----------~~~~~~~~ggv~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~~ 326 (1178)
T TIGR02082 263 GLPNAFG------EYDLTPDELAK----------ALADFAAEGGLNIVGGCCGTTPDHIRAIAEAVKNIKPRQRPVLYEP 326 (1178)
T ss_pred CCCCCCC------cccCCHHHHHH----------HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhhcCCCCCCCCcccc
Confidence 9998643 49877766553 34455445679999999999986532 1110000 00000
Q ss_pred -------------------------------cchhhcccChHHHHHHHHHHHHHhcchhhccc
Q psy13907 305 -------------------------------WCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNT 336 (698)
Q Consensus 305 -------------------------------ws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNT 336 (698)
+...+.-.+++.+.+.-++-+++|||||-.|-
T Consensus 327 ~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn~ 389 (1178)
T TIGR02082 327 SRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGAQILDINV 389 (1178)
T ss_pred eeecCceEEeecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 01122225566777777888999999999985
No 18
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=4.2e-36 Score=320.80 Aligned_cols=229 Identities=34% Similarity=0.477 Sum_probs=160.3
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHH
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELI 80 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~ 80 (698)
+|...|.+ +|++.+.++++|++||++||+|+++|. .+++++|||||||+|+++. |++|+|+|. .+.++++
T Consensus 65 a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~------~~~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~ 134 (305)
T PF02574_consen 65 ASRERLKE-YGLSDEEAEELNRAAVELAREAADEYG------SGRKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELR 134 (305)
T ss_dssp -SHHHHGG-GT-GGGCHHHHHHHHHHHHHHHHTT---------TT-SEEEEEEE--S---------CTTCT--T-HHHHH
T ss_pred Cchhhhhh-cCCcHHHHHHHHHHHHHHHHHHHhhcc------CCCccEEEEEcccccccch-hhhcccccc--ccHHHHH
Confidence 46778877 699866669999999999999998653 2346999999999999999 999999984 7899999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhC---CCCc
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKN---PAQL 157 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~---~~~~ 157 (698)
++|++|+++|.++|||+|+|||||++.|+++++++++++.++|+|+||++.+++++.+|+++.+++..+.... ..++
T Consensus 135 ~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~ 214 (305)
T PF02574_consen 135 DFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGP 214 (305)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999966899999999999999999999888887664310 2589
Q ss_pred eEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCcee
Q psy13907 158 VAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFET 237 (698)
Q Consensus 158 ~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~ 237 (698)
++||+||++ +|..+..+++.+... . ..||+++||+|+|..
T Consensus 215 ~~iGvNC~~-----------------------------~~~~~~~l~~~~~~~------~-----~~~l~vyPNsG~~~~ 254 (305)
T PF02574_consen 215 DAIGVNCTS-----------------------------PPEIMKALLELMSAT------H-----DIPLIVYPNSGEPYD 254 (305)
T ss_dssp SEEEEESSS------------------------------HHHHHHHHHHHHHH------T------SEEEEE--SBS-TT
T ss_pred heEEcCCCC-----------------------------cHHHHhHHHHHHhcc------C-----CceEEEecCCCCCcc
Confidence 999999999 777776666655443 2 689999999999987
Q ss_pred ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc
Q psy13907 238 YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH 291 (698)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~ 291 (698)
.+ . .|..+++.+... |.+. +.++ .+.++.|++|||||.++..
T Consensus 255 ~~--~---~~~~~~~~~~~~---~~~~---~~~~-~~~G~~iiGGCCGt~P~hI 296 (305)
T PF02574_consen 255 VG--K---VWSETPEDFAPE---WAEF---VKEW-VEAGARIIGGCCGTTPEHI 296 (305)
T ss_dssp SS--G---GSTTTTTSHGGG----HHH---HHHH-HHHHHCEE---TT--HHHH
T ss_pred cc--c---ccccchhhhHHH---HHHH---HHHH-HHhCCEEEEeCCCCCHHHH
Confidence 65 2 487666665542 3333 3343 5667899999999987643
No 19
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-33 Score=284.99 Aligned_cols=221 Identities=34% Similarity=0.503 Sum_probs=174.8
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHH
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELI 80 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~ 80 (698)
+++++|.+. .+.+++.++++++|+||++|++++.. ....|||||||||+++++ ||+|+|+ .+.+.++
T Consensus 67 a~~~~~~e~--~~~~~~~~l~~~sv~la~~ard~~g~-------~~~~iagsiGP~ga~~a~--Ey~g~Y~--~~~d~~~ 133 (300)
T COG2040 67 ATPEGFAER--VSEDEAKQLIRRSVELARAARDAYGE-------ENQNIAGSLGPYGAALAD--EYRGDYG--ASQDALY 133 (300)
T ss_pred cCHHHHHHh--cchhHHHHHHHHHHHHHHHHHHHhcc-------cccccceeccchhhhcCh--hhcCccC--ccHHHHH
Confidence 467888884 56689999999999999999998743 234589999999999987 9999996 6778889
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
+||++|+++|.++|||+|++||+|++.|+++++++++++ ++|+|||||+++++++++|+++.+++..+. ...++.++
T Consensus 134 ~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~-s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~--~~~~iaa~ 210 (300)
T COG2040 134 KFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF-SKPAWISFTLNDDTRLRDGTPLSEAAAILA--GLPNIAAL 210 (300)
T ss_pred HHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh-CCceEEEEEeCCCCccCCCccHHHHHHHHh--cCcchhhe
Confidence 999999999999999999999999999999999999997 999999999999999999999999998775 23589999
Q ss_pred EEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCceeecC
Q psy13907 161 GVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHG 240 (698)
Q Consensus 161 GiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~~~~ 240 (698)
||||++|+.+..+ ++++... .+ +.|+.|+||.|-=-.-.+
T Consensus 211 gvNC~~p~~~~a~------------------------------i~~l~~~-----~~-----~~piivYPNSGe~~d~~~ 250 (300)
T COG2040 211 GVNCCHPDHIPAA------------------------------IEELSKL-----LT-----GKPIIVYPNSGEQYDPAG 250 (300)
T ss_pred eeccCChhhhHHH------------------------------HHHHHhc-----CC-----CCceEEcCCcccccCcCC
Confidence 9999986555544 4444322 13 789999999773221112
Q ss_pred eeeeeeeccchhhhccc-cchhhhhHHHHHHHHhhCceEEEeccccccccc
Q psy13907 241 VFVNVQYNLKCELKRSH-FNILSKDLQKINEFILENKLYLIDGGFSSQLSK 290 (698)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~ 290 (698)
++ -| +..++..-.++..-....+-.|++|||+|.+..
T Consensus 251 k~-------------w~~p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~ 288 (300)
T COG2040 251 KT-------------WHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAH 288 (300)
T ss_pred Cc-------------CCCCCCchhHHHHHHHHHHhcccceeeeccCCChHH
Confidence 22 22 333433333332224678899999999997643
No 20
>KOG2717|consensus
Probab=100.00 E-value=9.3e-36 Score=291.99 Aligned_cols=107 Identities=55% Similarity=1.044 Sum_probs=103.7
Q ss_pred cccccCCCCceeeeeeccccccccccCCcccEEEEeecCCchhhhhhhhhcccccccccchhhhhhhhhhhhccccccCC
Q psy13907 592 NARDKFNIPRFRISGHLDSTECSVVRPFTGEIVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTG 671 (698)
Q Consensus 592 ~~~e~~~~~~~~lsG~~~~~~~~~~~p~~~~~~vEr~nv~~~s~~~~Lir~e~~~~~~~~~~~~~~iq~~qi~~g~~~~~ 671 (698)
|++||...|+|++.|.||+++|.+.+|++|+++||.+.++++||++||+|||||+|+|||++|+||||+||||||||||+
T Consensus 169 ~~ker~~~p~FlvtG~Ld~t~c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Egy~~dateIQsiQIADGdVcr~ 248 (313)
T KOG2717|consen 169 PLKERIKTPGFLVTGKLDATQCSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEGYVTDATEIQSIQIADGDVCRN 248 (313)
T ss_pred cchhhccCCceEEEeeecceeeEecCCccceEEEEeeccceeEEEEEEEEEEEeecccceecccceeeeEEeccCccccC
Confidence 36778789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhccccccccccccccceeeC
Q psy13907 672 IPIPIYMVFPRLFTCPTLITSNFKIVM 698 (698)
Q Consensus 672 ~~~p~~~~~p~~~~~~~~~~~~~~~~~ 698 (698)
|++||||+|||||||||+.|+||||-|
T Consensus 249 l~lPIymvlPRLftCPtl~t~nFkvEF 275 (313)
T KOG2717|consen 249 LTLPIYMVLPRLFTCPTLFTGNFKVEF 275 (313)
T ss_pred CceeEEEEechhhcCCceeccccEEEE
Confidence 999999999999999999999999854
No 21
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=4.2e-33 Score=322.50 Aligned_cols=212 Identities=27% Similarity=0.367 Sum_probs=180.9
Q ss_pred CCHhhHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHH
Q psy13907 1 ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELI 80 (698)
Q Consensus 1 ~s~~~l~~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~ 80 (698)
+|.++|.+ +|++ ++++++|++||+|||+|++ ++++|||||||||++ +.|+ +++.++++
T Consensus 67 as~~~l~~-~g~~-~~~~~l~~~av~lAr~a~~-----------~~~~VagsiGP~g~~--------~~~~-~~~~~~~~ 124 (612)
T PRK08645 67 ANRIKLKR-YGLE-DKVKEINRAAVRLAREAAG-----------DDVYVAGTIGPIGGR--------GPLG-DISLEEIR 124 (612)
T ss_pred ccHHHHHh-cCch-HHHHHHHHHHHHHHHHHhc-----------CCCeEEEeCCCCCCC--------CCCC-CCCHHHHH
Confidence 47788888 7997 8899999999999999985 358999999999984 4554 47899999
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
++|++|++.|.++|||+|+|||||+++|++++++++++..++|+|+||+++++|++++|+++++++..+.. .++++|
T Consensus 125 ~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~---~~~~av 201 (612)
T PRK08645 125 REFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKELVA---AGADVV 201 (612)
T ss_pred HHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHHHh---CCCCEE
Confidence 99999999999999999999999999999999999998555999999999999999999999999998852 569999
Q ss_pred EEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCceeecC
Q psy13907 161 GVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHG 240 (698)
Q Consensus 161 GiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~~~~ 240 (698)
|+||++ ||.+|.++++++... + +.||.++||||+|...++
T Consensus 202 GiNC~~-----------------------------~p~~~~~~l~~l~~~------~-----~~pl~vypNaG~~~~~~~ 241 (612)
T PRK08645 202 GLNCGL-----------------------------GPYHMLEALERIPIP------E-----NAPLSAYPNAGLPEYVDG 241 (612)
T ss_pred EecCCC-----------------------------CHHHHHHHHHHHHhc------c-----CceEEEEECCCCCCCCCC
Confidence 999999 999999999999664 3 689999999999987666
Q ss_pred eeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc
Q psy13907 241 VFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH 291 (698)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~ 291 (698)
+.. |..+++. |.+.+ .+ ..+.++.|++|||||.++..
T Consensus 242 ~~~---~~~~p~~-------~~~~~---~~-~~~~Ga~iiGGCCgt~P~hI 278 (612)
T PRK08645 242 RYV---YSANPEY-------FAEYA---LE-FVEQGVRLIGGCCGTTPEHI 278 (612)
T ss_pred ccc---cCCCHHH-------HHHHH---HH-HHHhCCCEEeEecCCCHHHH
Confidence 653 7655544 44433 33 35668999999999976554
No 22
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=99.75 E-value=6e-20 Score=192.00 Aligned_cols=98 Identities=41% Similarity=0.716 Sum_probs=81.5
Q ss_pred CceeeeeeccccccccccCCcccEEEEeecCCchhhhhhhhhcccccccccchhhhhhhhhhhhccccccCCCCcchhhh
Q psy13907 600 PRFRISGHLDSTECSVVRPFTGEIVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMV 679 (698)
Q Consensus 600 ~~~~lsG~~~~~~~~~~~p~~~~~~vEr~nv~~~s~~~~Lir~e~~~~~~~~~~~~~~iq~~qi~~g~~~~~~~~p~~~~ 679 (698)
..+.+.|.++++.+.+.++++|.+.++.+.++++++++||+|+|++++++++++|+++||++||.||++|||..|||||+
T Consensus 164 ~~lhief~~~k~~~~l~d~i~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~~~e~t~i~~~eImDG~p~rge~IPirl~ 243 (275)
T PF03643_consen 164 DCLHIEFEYDKSKYHLKDVITGKIYFLLVRIKIKSMELQLIRVETCGCGENYAKESTEIQKIEIMDGAPCRGESIPIRLF 243 (275)
T ss_dssp TTEEEEEEES-SEEETT-EEEEEEEEEEESS-EEEEEEEEEEEEEECECCCEEEEEEEEEEEEEESS---TT-EEEEEEE
T ss_pred ccEEEEEEEcccceECCCCEEEEEEEEEEeecceEEEEEEEEEEEEecCCcccccceEEEEEEeecCCccccceeeEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccc--ccceee
Q psy13907 680 FPRLFTCPTLIT--SNFKIV 697 (698)
Q Consensus 680 ~p~~~~~~~~~~--~~~~~~ 697 (698)
||||++|||+.+ +.|||-
T Consensus 244 l~~l~l~Pt~~~~~~~FsV~ 263 (275)
T PF03643_consen 244 LPRLFLCPTYKNVNNKFSVE 263 (275)
T ss_dssp CCCT-----EEEECTTEEEE
T ss_pred cCCcccCCcchhcCCcEEEE
Confidence 999999999995 559984
No 23
>KOG2717|consensus
Probab=98.05 E-value=1e-06 Score=88.24 Aligned_cols=76 Identities=54% Similarity=0.982 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecC-CCCceeecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhh
Q psy13907 196 KPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPN-RSLFETYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILE 274 (698)
Q Consensus 196 gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pn-ag~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 274 (698)
.|.++++.--++...||+|+|++.|||+.||-.+-| .-+-+.+||.++||+|.++|+.+++ |++|++++..+|+.+
T Consensus 67 KPIqiv~~tiE~~~pGK~p~G~tEipFelpL~~kge~~~lYETyHGvfiNiqY~LtcdikR~---~L~K~ltkt~eFiv~ 143 (313)
T KOG2717|consen 67 KPIQIVKKTIEVKSPGKIPPGTTEIPFELPLREKGEGEKLYETYHGVFINIQYLLTCDIKRG---YLHKPLTKTMEFIVE 143 (313)
T ss_pred cchhhhhceEEEecCCCCCCCceeeeeeeeeccCCCccEeeeeecceEEEEEEEEEEecccc---hhcCchhhhheeeec
Confidence 888888888888899999999999999999999988 6778899999999999999999998 999999988877533
No 24
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=97.72 E-value=1.8e-05 Score=90.97 Aligned_cols=77 Identities=19% Similarity=0.015 Sum_probs=60.8
Q ss_pred CCCCcccccccccCCCCceeeeeeccccccccccCCcccEEE-EeecCCchhhhhhhhhcccccccccchhhhhhhhhhh
Q psy13907 584 SITPESLTNARDKFNIPRFRISGHLDSTECSVVRPFTGEIVI-EQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQ 662 (698)
Q Consensus 584 ~~~~~~~~~~~e~~~~~~~~lsG~~~~~~~~~~~p~~~~~~v-Er~nv~~~s~~~~Lir~e~~~~~~~~~~~~~~iq~~q 662 (698)
+||+.|.. .+..++||+ +++...+++.|++| ||||++||++|.+||+.|++..+..+|++.+|= ..|
T Consensus 2 ~pr~~~~~-------~~~~~~S~~----~~~~~~~~~~fv~iGERtN~tGskkf~~li~~~~y~~~l~iAr~Qv~~-GA~ 69 (842)
T COG1410 2 KPRQRPVI-------YEPSVLSGY----EPIPIGQDNSFVNIGERTNVTGSKKFRRLIIAEDYDEALDVARQQVEN-GAQ 69 (842)
T ss_pred CCcccCCC-------Ccceeeecc----cceeccCCCceeEeecccCccchHHHHHHHHcccHHHHHHHHHHHHhc-CCE
Confidence 56655553 567899999 89999999999999 999999999999999988888777777665554 556
Q ss_pred hccccccCCC
Q psy13907 663 IGEGNVFTGI 672 (698)
Q Consensus 663 i~~g~~~~~~ 672 (698)
|.|-|+.-+.
T Consensus 70 ilDvn~d~~~ 79 (842)
T COG1410 70 ILDVNVDYVG 79 (842)
T ss_pred EEEeeccccc
Confidence 6665555544
No 25
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=94.81 E-value=1.3 Score=46.59 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEecccCCH
Q psy13907 413 TPQELIDYHRPRIEALIQGGIDLLAIETLPAQ 444 (698)
Q Consensus 413 t~del~~~y~~qi~~L~~~GvDlll~ETi~~~ 444 (698)
+++++.+.-.+.++.|.++|+|-+++|.+.|.
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 99999999999999999999999999999876
No 26
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.83 E-value=5.4 Score=42.17 Aligned_cols=184 Identities=15% Similarity=0.072 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEE-ec-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 144 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~-ET-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~ 144 (698)
.++.+ .++..++.+++.|||.|++ =| .-+.+|-+.+++.+.+. .++|+++... +.+..+
T Consensus 14 ~iD~~----~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~ 80 (281)
T cd00408 14 EVDLD----ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTRE 80 (281)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHH
Confidence 45554 5566788888889999874 22 22578888888877764 2589888773 334556
Q ss_pred HHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCc
Q psy13907 145 IARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEA 224 (698)
Q Consensus 145 ~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (698)
+++..+..+..|+++|.+---. + ....++.+.+..+++.+. + +.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~--y-----------------------~~~~~~~~~~~~~~ia~~------~-----~~ 124 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPY--Y-----------------------NKPSQEGIVAHFKAVADA------S-----DL 124 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCc--C-----------------------CCCCHHHHHHHHHHHHhc------C-----CC
Confidence 6665543345789998884422 1 112678899999999886 5 78
Q ss_pred cEEeecCCC---Ccee--------ecCeeeeeeeccchhhhccccchhhhhHHHHHHHH--hhCceEEEecccccccccc
Q psy13907 225 PLKAKPNRS---LFET--------YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFI--LENKLYLIDGGFSSQLSKH 291 (698)
Q Consensus 225 ~~~~~pnag---~p~~--------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~i~dG~~gt~l~~~ 291 (698)
|+.+|-|-+ .+-. .+++.+.+.+. + .++..+.+.+ ...+..++.|.-...+...
T Consensus 125 pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s--------~-----~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l 191 (281)
T cd00408 125 PVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDS--------S-----GDLDRLTRLIALLGPDFAVLSGDDDLLLPAL 191 (281)
T ss_pred CEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeC--------C-----CCHHHHHHHHHhcCCCeEEEEcchHHHHHHH
Confidence 888885532 2200 12333433332 1 1222222222 2356888887743333322
Q ss_pred cCCCCcCcCCCcccchhhcccChHHHHHHHHHHH
Q psy13907 292 VGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYV 325 (698)
Q Consensus 292 ~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl 325 (698)
-.. .+-.++...++ -|+.+.++++.|.
T Consensus 192 -~~G-----~~G~i~~~~n~-~p~~~~~~~~~~~ 218 (281)
T cd00408 192 -ALG-----ADGAISGAANV-APKLAVALYEAAR 218 (281)
T ss_pred -HcC-----CCEEEehHHhh-CHHHHHHHHHHHH
Confidence 111 11234555555 7888888888774
No 27
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.65 E-value=6 Score=42.76 Aligned_cols=181 Identities=13% Similarity=0.047 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ec-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 81 DYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~-ET-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
+.++.+++.+++.|||.|++ =| .-+.+|-+.+++++.+. .++|+++... ..+..++++.++..
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~ai~~a~~A 99 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRDTIARTRAL 99 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHHHHHHHHHH
Confidence 35566888888899999875 23 23678888888777654 3489997773 23456666655433
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCC
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNR 232 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pna 232 (698)
...|+|++.+-=-. + ++..++.+..+.++++++ + | +.||.+|-|-
T Consensus 100 ~~~Gad~vlv~~P~--y-----------------------~~~~~~~l~~yf~~va~a------~---~-~lPv~iYn~P 144 (309)
T cd00952 100 LDLGADGTMLGRPM--W-----------------------LPLDVDTAVQFYRDVAEA------V---P-EMAIAIYANP 144 (309)
T ss_pred HHhCCCEEEECCCc--C-----------------------CCCCHHHHHHHHHHHHHh------C---C-CCcEEEEcCc
Confidence 45788888764321 1 112568889999999886 4 1 3799999663
Q ss_pred ---CCcee--------ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccccCCCCcCcCC
Q psy13907 233 ---SLFET--------YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKD 301 (698)
Q Consensus 233 ---g~p~~--------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~ 301 (698)
|.+-. .++..+.|.+. +....+. .+.+. ...+..|+.|.-. .+... -+- .+
T Consensus 145 ~~tg~~l~~~~l~~L~~~pnivgiKds-------sd~~~~~----~~i~~-~~~~~~v~~g~d~-~l~~~-~~~----~~ 206 (309)
T cd00952 145 EAFKFDFPRAAWAELAQIPQVVAAKYL-------GDIGALL----SDLAA-VKGRMRLLPLEDD-YYAAA-RLF----PE 206 (309)
T ss_pred hhcCCCCCHHHHHHHhcCCCEEEEEec-------CChHHHH----HHHHH-cCCCeEEeecchh-HHHHH-Hhc----Cc
Confidence 32210 12233333332 1111111 11221 2346777765554 33322 111 01
Q ss_pred --CcccchhhcccChHHHHHHHHHH
Q psy13907 302 --NPLWCSAFLHSNRQAVIDTHRDY 324 (698)
Q Consensus 302 --~~lws~~~~l~~Pe~V~~iH~~y 324 (698)
+..|+...++ .|+...++++.|
T Consensus 207 ~~~G~is~~~n~-~P~~~~~l~~a~ 230 (309)
T cd00952 207 EVTAFWSSGAAC-GPAPVTALRDAV 230 (309)
T ss_pred cCccEEEecccc-CcHHHHHHHHHH
Confidence 1356777777 899999999998
No 28
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.52 E-value=2.7 Score=44.81 Aligned_cols=181 Identities=16% Similarity=0.089 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cC-----cCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 81 DYHRPRIEALIQGGIDLLAIE-TL-----PAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~E-Ti-----~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
+.++..++.+++.|||.|++= |. -+.+|-+.+++.+.+. .+.|+++... +.+..++++.++..
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~i~~a~~a 92 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEAIELARHA 92 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHHHHHHHHH
Confidence 466778888889999998873 22 2577877777777653 4689998874 34567777766443
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCC
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNR 232 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pna 232 (698)
+..+++++.+---. + ....++++.+..+++.+. + +.||.++-+.
T Consensus 93 ~~~Gad~v~v~~P~--~-----------------------~~~s~~~l~~y~~~ia~~------~-----~~pi~iYn~P 136 (289)
T PF00701_consen 93 QDAGADAVLVIPPY--Y-----------------------FKPSQEELIDYFRAIADA------T-----DLPIIIYNNP 136 (289)
T ss_dssp HHTT-SEEEEEEST--S-----------------------SSCCHHHHHHHHHHHHHH------S-----SSEEEEEEBH
T ss_pred hhcCceEEEEeccc--c-----------------------ccchhhHHHHHHHHHHhh------c-----CCCEEEEECC
Confidence 45788988773311 1 112677889999999887 5 7888888773
Q ss_pred ---CCcee--------ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc-cCCCCcCcC
Q psy13907 233 ---SLFET--------YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH-VGEDNVTEK 300 (698)
Q Consensus 233 ---g~p~~--------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~-~g~~~~~~~ 300 (698)
|..-. ..+..+.+.+ ++.+. ..+..+... ...++.|+.|.-...+... .|.
T Consensus 137 ~~tg~~ls~~~l~~L~~~~nv~giK~--------s~~~~--~~~~~~~~~-~~~~~~v~~G~d~~~~~~l~~G~------ 199 (289)
T PF00701_consen 137 ARTGNDLSPETLARLAKIPNVVGIKD--------SSGDL--ERLIQLLRA-VGPDFSVFCGDDELLLPALAAGA------ 199 (289)
T ss_dssp HHHSSTSHHHHHHHHHTSTTEEEEEE--------SSSBH--HHHHHHHHH-SSTTSEEEESSGGGHHHHHHTTS------
T ss_pred CccccCCCHHHHHHHhcCCcEEEEEc--------CchhH--HHHHHHhhh-cccCeeeeccccccccccccccC------
Confidence 32110 0122232222 11211 112222332 3567888888554444332 022
Q ss_pred CCcccchhhcccChHHHHHHHHHHH
Q psy13907 301 DNPLWCSAFLHSNRQAVIDTHRDYV 325 (698)
Q Consensus 301 ~~~lws~~~~l~~Pe~V~~iH~~yl 325 (698)
.-.|+...++ -|+.+.++++.|.
T Consensus 200 -~G~is~~~n~-~P~~~~~i~~~~~ 222 (289)
T PF00701_consen 200 -DGFISGLANV-FPELIVEIYDAFQ 222 (289)
T ss_dssp -SEEEESGGGT-HHHHHHHHHHHHH
T ss_pred -CEEEEccccc-ChHHHHHHHHHHH
Confidence 2355666777 7888888877775
No 29
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.30 E-value=6.6 Score=42.11 Aligned_cols=185 Identities=12% Similarity=0.044 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEE-ec-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 144 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~-ET-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~ 144 (698)
.++.+ .++..++.+++.|||.|++ =| .-+.+|=+.+++.+.+. ..+|+++... .+..+
T Consensus 22 ~iD~~----~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~----------~~t~~ 87 (296)
T TIGR03249 22 SFDEA----AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG----------GNTSD 87 (296)
T ss_pred CcCHH----HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC----------ccHHH
Confidence 35554 4667788888999999875 23 23677888888766653 3489997752 23566
Q ss_pred HHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCc
Q psy13907 145 IARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEA 224 (698)
Q Consensus 145 ~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (698)
+++.++.....|++++.+- .|-+ .....+.+.+..+++.++ + +.
T Consensus 88 ai~~a~~a~~~Gadav~~~--pP~y-----------------------~~~s~~~i~~~f~~v~~a------~-----~~ 131 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLL--PPYL-----------------------INGEQEGLYAHVEAVCES------T-----DL 131 (296)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCC-----------------------CCCCHHHHHHHHHHHHhc------c-----CC
Confidence 6665543345788988773 3211 111457888888888876 4 67
Q ss_pred cEEeecCCCCc--e-----e--ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecc--cccc-cccc-
Q psy13907 225 PLKAKPNRSLF--E-----T--YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGG--FSSQ-LSKH- 291 (698)
Q Consensus 225 ~~~~~pnag~p--~-----~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~--~gt~-l~~~- 291 (698)
||.+|=+.|.+ - . .+++.+.|.+. + ++...+. .+.+. ..++..|+.|. .... +...
T Consensus 132 pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds-~-----~d~~~~~----~~~~~-~~~~~~v~~G~~~~d~~~~~~~~ 200 (296)
T TIGR03249 132 GVIVYQRDNAVLNADTLERLADRCPNLVGFKDG-I-----GDMEQMI----EITQR-LGDRLGYLGGMPTAEVTAPAYLP 200 (296)
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeC-C-----CCHHHHH----HHHHH-cCCCeEEEeCCCcchhhHHHHHh
Confidence 88888544532 1 1 12344444442 1 1111111 12221 23467888885 2222 2211
Q ss_pred cCCCCcCcCCCcccc-hhhcccChHHHHHHHHHHHHHh
Q psy13907 292 VGEDNVTEKDNPLWC-SAFLHSNRQAVIDTHRDYVRAG 328 (698)
Q Consensus 292 ~g~~~~~~~~~~lws-~~~~l~~Pe~V~~iH~~yl~AG 328 (698)
.|.+ -|. ...|+ .|+.+.++++.| ++|
T Consensus 201 ~Ga~--------G~is~~~n~-~P~~~~~~~~~~-~~g 228 (296)
T TIGR03249 201 LGVT--------SYSSAIFNF-IPHIARAFYEAL-RRG 228 (296)
T ss_pred CCCC--------EEEecHHHh-hHHHHHHHHHHH-HcC
Confidence 0322 232 34444 799999999988 455
No 30
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=92.10 E-value=6.3 Score=42.19 Aligned_cols=182 Identities=10% Similarity=-0.032 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhCC-CCEEEEe------cCcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh
Q psy13907 81 DYHRPRIEALIQGG-IDLLAIE------TLPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 151 (698)
Q Consensus 81 ~~~~~qi~~l~~~G-VD~il~E------Ti~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~ 151 (698)
+.++.+++.+++.| ||.|++= ..-+.+|-+.+++.+.+. ..+|+++... +.+..++++..+.
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~~i~la~~ 91 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLKEAVELGKY 91 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHHHHHHHHHH
Confidence 35566778888899 9998542 334788888888766654 2478887763 2345666665543
Q ss_pred hCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecC
Q psy13907 152 KNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPN 231 (698)
Q Consensus 152 ~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pn 231 (698)
.+..|+|+|.+ ..|-+ +...++++..+.+++.++ +. +.||.+|-|
T Consensus 92 a~~~Gad~v~v--~~P~y-----------------------~~~~~~~i~~yf~~v~~~------~~----~lpv~lYn~ 136 (290)
T TIGR00683 92 ATELGYDCLSA--VTPFY-----------------------YKFSFPEIKHYYDTIIAE------TG----GLNMIVYSI 136 (290)
T ss_pred HHHhCCCEEEE--eCCcC-----------------------CCCCHHHHHHHHHHHHhh------CC----CCCEEEEeC
Confidence 34578898887 44322 111457899999998765 31 588998876
Q ss_pred C---CCcee--------ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccccCCCCcCcC
Q psy13907 232 R---SLFET--------YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEK 300 (698)
Q Consensus 232 a---g~p~~--------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~ 300 (698)
- |.+-. .+++.+.+.+. +.+. ..+..+... ..+..|+.|.=...+... ..-
T Consensus 137 P~~tg~~l~~~~i~~L~~~pnv~giK~s--------~~d~--~~~~~~~~~--~~~~~v~~G~d~~~~~~l-~~G----- 198 (290)
T TIGR00683 137 PFLTGVNMGIEQFGELYKNPKVLGVKFT--------AGDF--YLLERLKKA--YPNHLIWAGFDEMMLPAA-SLG----- 198 (290)
T ss_pred ccccccCcCHHHHHHHhcCCCEEEEEeC--------CCCH--HHHHHHHHh--CCCCEEEECchHHHHHHH-HCC-----
Confidence 4 32211 12334433332 1111 011222222 235667766533333332 111
Q ss_pred CCcccchhhcccChHHHHHHHHHHH
Q psy13907 301 DNPLWCSAFLHSNRQAVIDTHRDYV 325 (698)
Q Consensus 301 ~~~lws~~~~l~~Pe~V~~iH~~yl 325 (698)
.+-.++...|+ .|+.+.++++.|.
T Consensus 199 ~~G~i~~~~n~-~P~~~~~i~~~~~ 222 (290)
T TIGR00683 199 VDGAIGSTFNV-NGVRARQIFELTK 222 (290)
T ss_pred CCEEEecHHHh-CHHHHHHHHHHHH
Confidence 12234556666 6899999988874
No 31
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.87 E-value=7.2 Score=38.22 Aligned_cols=139 Identities=8% Similarity=0.054 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHH-HhcC--CCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCc
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELI-KEYP--GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQL 495 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~-~~~~--~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~ 495 (698)
+...+.++.+.++|+|.|.+-- ..++.+ +... +.|+++...... +. ....++++........+.
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~-~~----~~~~~~~~~a~~a~~~Ga 79 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPT-GL----TTTEVKVAEVEEAIDLGA 79 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCC-CC----CcHHHHHHHHHHHHHcCC
Confidence 4466777888889999987653 222222 2223 478876654322 11 224445554433223566
Q ss_pred eEEEEcC-CC------hhhhHHHHHHhc-C---CCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEee
Q psy13907 496 VAVGVNC-LA------PHYVESLLTSAG-R---DVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGG 564 (698)
Q Consensus 496 ~~iGlNC-~~------p~~~~~~l~~l~-~---~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGG 564 (698)
+++.+-+ .. .+.+..+++.+. . +.|+++|.+-+.. .+++.+.+.++...+.|+..|==
T Consensus 80 d~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-----------~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 80 DEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-----------KTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred CEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-----------CCHHHHHHHHHHHHHhCCCEEEe
Confidence 7777655 21 345566666654 2 7999999875421 24566666666666778777654
Q ss_pred cCC-----CchHHHHHHHhccc
Q psy13907 565 CCR-----TNADDMKNVNQVPV 581 (698)
Q Consensus 565 CCG-----TtP~hI~al~~~v~ 581 (698)
..| .+.++++++++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 149 STGFGGGGATVEDVKLMKEAVG 170 (201)
T ss_pred CCCCCCCCCCHHHHHHHHHhcc
Confidence 444 47788888887653
No 32
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=91.23 E-value=11 Score=40.71 Aligned_cols=125 Identities=14% Similarity=0.021 Sum_probs=80.5
Q ss_pred EEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEE-ecC-----cCHHHHHHHHHHHHhc--
Q psy13907 48 RVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAI-ETL-----PAQEEAMVLAELIKEY-- 119 (698)
Q Consensus 48 ~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~-ETi-----~~l~Ea~aa~~a~~~~-- 119 (698)
.++.-+-|+.. + +.++.+ .++.+++.+++.|||.|++ =|. -+.+|=+.+++.+.+.
T Consensus 11 v~~a~vTPf~~----------d--g~iD~~----~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~ 74 (303)
T PRK03620 11 LLSFPVTPFDA----------D--GSFDEA----AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA 74 (303)
T ss_pred eEEeeeCCCCC----------C--CCcCHH----HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 45556667643 1 246665 4566788888899999865 332 2567777777766543
Q ss_pred CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHH
Q psy13907 120 PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQ 199 (698)
Q Consensus 120 ~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~ 199 (698)
.++|+++... + +..++++.++.....|++++.+ ..|-+ ....++.
T Consensus 75 ~~~pvi~gv~---------~-~t~~~i~~~~~a~~~Gadav~~--~pP~y-----------------------~~~~~~~ 119 (303)
T PRK03620 75 GRVPVIAGAG---------G-GTAQAIEYAQAAERAGADGILL--LPPYL-----------------------TEAPQEG 119 (303)
T ss_pred CCCcEEEecC---------C-CHHHHHHHHHHHHHhCCCEEEE--CCCCC-----------------------CCCCHHH
Confidence 3589997662 2 4566666554334578888877 22211 1125688
Q ss_pred HHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCC
Q psy13907 200 LLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSL 234 (698)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~ 234 (698)
+....+++.++ + +.||.+|-+.|.
T Consensus 120 i~~~f~~va~~------~-----~lpi~lYn~~g~ 143 (303)
T PRK03620 120 LAAHVEAVCKS------T-----DLGVIVYNRDNA 143 (303)
T ss_pred HHHHHHHHHHh------C-----CCCEEEEcCCCC
Confidence 99999999887 5 789999876653
No 33
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.18 E-value=11 Score=39.81 Aligned_cols=185 Identities=16% Similarity=0.064 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEe-c-----CcCHHHHHHHHHHHHhcC--CCeEEEEEEEcCCCccCCCCCHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEYP--GLKAWISFSCKDEKHTCHGDKFGL 144 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~E-T-----i~~l~Ea~aa~~a~~~~~--~~Pv~iSft~~~~g~l~~G~~~~~ 144 (698)
.++.+ .++..++.+++.|||.+++= | .-+.+|-+.+++.+.+.. ++|+++... +.+..+
T Consensus 17 ~iD~~----~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~ 83 (284)
T cd00950 17 SVDFD----ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG---------SNNTAE 83 (284)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC---------CccHHH
Confidence 35554 45567778888999998743 3 347888888888777642 478886663 345677
Q ss_pred HHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCc
Q psy13907 145 IARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEA 224 (698)
Q Consensus 145 ~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (698)
+++.++.....|+++|.+= .|.+ ++..++++....+++.+. + +.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~--~P~~-----------------------~~~~~~~l~~~~~~ia~~------~-----~~ 127 (284)
T cd00950 84 AIELTKRAEKAGADAALVV--TPYY-----------------------NKPSQEGLYAHFKAIAEA------T-----DL 127 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc--cccc-----------------------CCCCHHHHHHHHHHHHhc------C-----CC
Confidence 7776544345678876653 3211 122678899999999886 5 78
Q ss_pred cEEeecCC---CCce-------e-ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc-c
Q psy13907 225 PLKAKPNR---SLFE-------T-YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH-V 292 (698)
Q Consensus 225 ~~~~~pna---g~p~-------~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~-~ 292 (698)
||.+|-|- |..- . .+++.+.+.+. +.+. . .+..+... ...++.++.|.-+..+... .
T Consensus 128 pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s--------~~~~-~-~~~~~~~~-~~~~~~v~~G~d~~~~~~~~~ 196 (284)
T cd00950 128 PVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEA--------TGDL-D-RVSELIAL-CPDDFAVLSGDDALTLPFLAL 196 (284)
T ss_pred CEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEEC--------CCCH-H-HHHHHHHh-CCCCeEEEeCChHhHHHHHHC
Confidence 89888663 3210 0 11334433332 1111 0 11122222 2356778877654433322 0
Q ss_pred CCCCcCcCCCcccchhhcccChHHHHHHHHHHH
Q psy13907 293 GEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYV 325 (698)
Q Consensus 293 g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl 325 (698)
|.. -.++...++ -|+.+.++++.|.
T Consensus 197 G~~-------G~~s~~~n~-~p~~~~~~~~~~~ 221 (284)
T cd00950 197 GGV-------GVISVAANV-APKLMAEMVRAAL 221 (284)
T ss_pred CCC-------EEEehHHHh-hHHHHHHHHHHHH
Confidence 222 234555555 7888888888875
No 34
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=91.00 E-value=11 Score=40.27 Aligned_cols=112 Identities=11% Similarity=-0.063 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEe-c-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 144 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~E-T-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~ 144 (698)
.++.+ .++..++.+++.|||.|++= | .-+.+|=+.+++.+.+. .++||+++... +..+
T Consensus 17 ~iD~~----~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~----------~t~~ 82 (289)
T cd00951 17 SFDED----AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY----------GTAT 82 (289)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC----------CHHH
Confidence 46654 45667888888999998653 3 23677777777766553 35899987632 2345
Q ss_pred HHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCc
Q psy13907 145 IARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEA 224 (698)
Q Consensus 145 ~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (698)
+++..+.....|++++.+=--. + .+..++.+....+++.++ + +.
T Consensus 83 ~i~~a~~a~~~Gad~v~~~pP~--y-----------------------~~~~~~~i~~~f~~v~~~------~-----~~ 126 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLPPY--L-----------------------TEAPQEGLYAHVEAVCKS------T-----DL 126 (289)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-----------------------CCCCHHHHHHHHHHHHhc------C-----CC
Confidence 5554433345788988873211 1 112668899999999886 5 78
Q ss_pred cEEeecCCCC
Q psy13907 225 PLKAKPNRSL 234 (698)
Q Consensus 225 ~~~~~pnag~ 234 (698)
||.+|=+.|.
T Consensus 127 pi~lYn~~g~ 136 (289)
T cd00951 127 GVIVYNRANA 136 (289)
T ss_pred CEEEEeCCCC
Confidence 9999866563
No 35
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.64 E-value=13 Score=39.54 Aligned_cols=179 Identities=16% Similarity=0.078 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ec-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 81 DYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~-ET-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
+.++..++.+++.|||.+++ =| .-+.+|=+.+++.+.+. .++|+++... +.+..++++.++..
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~~~~~~i~~a~~a 92 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG---------SNSTAEAIELTKFA 92 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC---------CchHHHHHHHHHHH
Confidence 35566788888899999873 33 33678877777766653 2478886652 33567777765444
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCC
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNR 232 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pna 232 (698)
+..|+++|.+= .|. + ....++.+.+..+++.+. + +.||.+|-+-
T Consensus 93 ~~~G~d~v~~~--pP~---------------------~--~~~~~~~i~~~~~~ia~~------~-----~~pv~lYn~P 136 (292)
T PRK03170 93 EKAGADGALVV--TPY---------------------Y--NKPTQEGLYQHFKAIAEA------T-----DLPIILYNVP 136 (292)
T ss_pred HHcCCCEEEEC--CCc---------------------C--CCCCHHHHHHHHHHHHhc------C-----CCCEEEEECc
Confidence 45788887762 221 1 122578899999999886 5 6888888542
Q ss_pred ---CCce--------eecCeeeeeeeccchhhhccccchhhhhHHHHHHHH--hhCceEEEecccccccccc-cCCCCcC
Q psy13907 233 ---SLFE--------TYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFI--LENKLYLIDGGFSSQLSKH-VGEDNVT 298 (698)
Q Consensus 233 ---g~p~--------~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~i~dG~~gt~l~~~-~g~~~~~ 298 (698)
|..- ..+++.+.+.+. +. ++..+.+.+ ...+..++.|.-+..+... .|.+
T Consensus 137 ~~~g~~l~~~~~~~L~~~p~v~giK~s--------~~-----d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~--- 200 (292)
T PRK03170 137 GRTGVDILPETVARLAEHPNIVGIKEA--------TG-----DLERVSELIELVPDDFAVYSGDDALALPFLALGGV--- 200 (292)
T ss_pred cccCCCCCHHHHHHHHcCCCEEEEEEC--------CC-----CHHHHHHHHHhCCCCeEEEECChHhHHHHHHcCCC---
Confidence 3210 012334433332 11 122222222 2345778877665544332 0222
Q ss_pred cCCCcccchhhcccChHHHHHHHHHHH
Q psy13907 299 EKDNPLWCSAFLHSNRQAVIDTHRDYV 325 (698)
Q Consensus 299 ~~~~~lws~~~~l~~Pe~V~~iH~~yl 325 (698)
-.++...|+ .|+.+.++++.|.
T Consensus 201 ----G~is~~~n~-~P~~~~~l~~~~~ 222 (292)
T PRK03170 201 ----GVISVAANV-APKEMAEMCDAAL 222 (292)
T ss_pred ----EEEEhHHhh-hHHHHHHHHHHHH
Confidence 234555554 6888888888773
No 36
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.60 E-value=13 Score=39.47 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEE-ec-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 144 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~-ET-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~ 144 (698)
.++.+ .++..++.+++.|||.|++ =| .-+.+|=+.+++.+.+. ..+|+++... ..+.++
T Consensus 15 ~iD~~----~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~s~~~ 81 (285)
T TIGR00674 15 SVDFA----ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG---------SNATEE 81 (285)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC---------CccHHH
Confidence 45554 4566778888899999886 23 33677777777766653 3479887762 335667
Q ss_pred HHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCc
Q psy13907 145 IARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEA 224 (698)
Q Consensus 145 ~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (698)
+++..+.....|+|+|.+ ..|.+ ++..++.+....+++.++ + +.
T Consensus 82 ~i~~a~~a~~~Gad~v~v--~pP~y-----------------------~~~~~~~i~~~~~~i~~~------~-----~~ 125 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLV--VTPYY-----------------------NKPTQEGLYQHFKAIAEE------V-----DL 125 (285)
T ss_pred HHHHHHHHHHcCCCEEEE--cCCcC-----------------------CCCCHHHHHHHHHHHHhc------C-----CC
Confidence 776554334578888776 22211 122578999999999887 5 78
Q ss_pred cEEeecC
Q psy13907 225 PLKAKPN 231 (698)
Q Consensus 225 ~~~~~pn 231 (698)
||.+|-|
T Consensus 126 pi~lYn~ 132 (285)
T TIGR00674 126 PIILYNV 132 (285)
T ss_pred CEEEEEC
Confidence 8888865
No 37
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.58 E-value=15 Score=39.64 Aligned_cols=108 Identities=17% Similarity=0.023 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ec-----CcCHHHHHHHHHHHHhcC--CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 81 DYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEYP--GLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~-ET-----i~~l~Ea~aa~~a~~~~~--~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
+.+++.++.+++.|||.|++ =| .-+.+|=+.+++.+.+.. .+|+++... +.+..++++..+..
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g---------~~~t~eai~lak~a 95 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG---------SNSTAEAIELAKHA 95 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC---------CCcHHHHHHHHHHH
Confidence 45677888899999997765 22 236788788888887753 478887662 34466777655444
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCC
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNR 232 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pna 232 (698)
+..|+|+|.+=.-.+ .+..++.+..+.+.++++ + +.|+.+|-+.
T Consensus 96 ~~~Gad~il~v~PyY-------------------------~k~~~~gl~~hf~~ia~a------~-----~lPvilYN~P 139 (299)
T COG0329 96 EKLGADGILVVPPYY-------------------------NKPSQEGLYAHFKAIAEA------V-----DLPVILYNIP 139 (299)
T ss_pred HhcCCCEEEEeCCCC-------------------------cCCChHHHHHHHHHHHHh------c-----CCCEEEEeCc
Confidence 457899888765330 122568899999999987 5 8889888765
Q ss_pred C
Q psy13907 233 S 233 (698)
Q Consensus 233 g 233 (698)
+
T Consensus 140 ~ 140 (299)
T COG0329 140 S 140 (299)
T ss_pred c
Confidence 4
No 38
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=88.82 E-value=17 Score=38.35 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIETLPAQ 444 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~ 444 (698)
.-+++++.+.-.+-+++|.++|+|-+++|.+.|.
T Consensus 20 ~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~ 53 (257)
T TIGR00259 20 DDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDA 53 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4689999999999999999999999999999883
No 39
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=88.64 E-value=8 Score=40.91 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEE-------EEEEecCCCccCCCCcHHH---HHHHH
Q psy13907 418 IDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW-------ISFSCKDEKHTCHGDKFGL---IARDV 487 (698)
Q Consensus 418 ~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~-------iS~t~~~~g~l~~G~~l~~---~v~~~ 487 (698)
.+.++.-.+.+.++|+|.+=+|-- .+....++++.+ .++||+ .+... +.|...-|++-.+ +++..
T Consensus 92 e~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~-~ggy~~qgrt~~~a~~~i~~A 166 (263)
T TIGR00222 92 EQALKNAARVMQETGANAVKLEGG---EWLVETVQMLTE-RGVPVVGHLGLTPQSVNI-LGGYKVQGKDEEAAKKLLEDA 166 (263)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHH-CCCCEEEecCCCceeEee-cCCeeecCCCHHHHHHHHHHH
Confidence 344555556666799999999974 333344456655 579999 55543 2334444777553 33333
Q ss_pred HHhCCCCceEEEEcCCChhhhHHHHHHhcCCCCE
Q psy13907 488 YAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPL 521 (698)
Q Consensus 488 ~~~~~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl 521 (698)
.....++.+++=+-|...+.++.+-+.++ +|+
T Consensus 167 ~a~e~AGA~~ivlE~vp~~~a~~It~~l~--iP~ 198 (263)
T TIGR00222 167 LALEEAGAQLLVLECVPVELAAKITEALA--IPV 198 (263)
T ss_pred HHHHHcCCCEEEEcCCcHHHHHHHHHhCC--CCE
Confidence 32334788999999988777777777775 554
No 40
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.59 E-value=16 Score=38.98 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHHHHh-CCCCEEEEe-c-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHH
Q psy13907 73 STTPQELIDYHRPRIEALIQ-GGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFG 143 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~-~GVD~il~E-T-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~ 143 (698)
.++.+ .++..++.+++ .|||.|++= | .-+.+|-+.+++.+.+. ..+|+++... ..+..
T Consensus 20 ~iD~~----~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~ 86 (293)
T PRK04147 20 QIDEQ----GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTA 86 (293)
T ss_pred CcCHH----HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHH
Confidence 35554 55667888888 999998653 2 22567877777766654 2478887652 23566
Q ss_pred HHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcC
Q psy13907 144 LIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFE 223 (698)
Q Consensus 144 ~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~ 223 (698)
++++..+.....|++++.+---. + .+..++.+.++.+++.++ + +
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~P~--y-----------------------~~~~~~~l~~~f~~va~a------~-----~ 130 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVTPF--Y-----------------------YPFSFEEICDYYREIIDS------A-----D 130 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc--C-----------------------CCCCHHHHHHHHHHHHHh------C-----C
Confidence 77765543345688887754321 1 111457889999999887 5 7
Q ss_pred ccEEeecC
Q psy13907 224 APLKAKPN 231 (698)
Q Consensus 224 ~~~~~~pn 231 (698)
.||.+|-|
T Consensus 131 lPv~iYn~ 138 (293)
T PRK04147 131 NPMIVYNI 138 (293)
T ss_pred CCEEEEeC
Confidence 89999965
No 41
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.04 E-value=24 Score=37.60 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhC-CCCEEEEe-c-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh
Q psy13907 81 DYHRPRIEALIQG-GIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 151 (698)
Q Consensus 81 ~~~~~qi~~l~~~-GVD~il~E-T-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~ 151 (698)
+.++..++.+++. |||.|++= | .-+.+|=+.+++++.+. ..+|+++... +.+..++++..+.
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~---------~~~~~~ai~~a~~ 91 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG---------SLNLKESQELAKH 91 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC---------CCCHHHHHHHHHH
Confidence 3556677888888 99998653 2 12577777777766653 2478887662 3356667765543
Q ss_pred hCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecC
Q psy13907 152 KNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPN 231 (698)
Q Consensus 152 ~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pn 231 (698)
....|++++.+---. + ....++.+.++.+++.++ + | +.||.+|-|
T Consensus 92 a~~~Gad~v~~~~P~--y-----------------------~~~~~~~i~~~~~~v~~a------~---~-~lpi~iYn~ 136 (288)
T cd00954 92 AEELGYDAISAITPF--Y-----------------------YKFSFEEIKDYYREIIAA------A---A-SLPMIIYHI 136 (288)
T ss_pred HHHcCCCEEEEeCCC--C-----------------------CCCCHHHHHHHHHHHHHh------c---C-CCCEEEEeC
Confidence 345788888765422 1 112567889999998876 3 1 478888866
Q ss_pred C---CCce-------e-ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEecccccccccc-cCCCCcCc
Q psy13907 232 R---SLFE-------T-YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSKH-VGEDNVTE 299 (698)
Q Consensus 232 a---g~p~-------~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~~-~g~~~~~~ 299 (698)
. |.+- . .+++.+.+.+. +.+. . ....+... ...+..++.|.-+..+... .|.+
T Consensus 137 P~~tg~~l~~~~~~~L~~~pnivgiK~s--------~~d~-~-~~~~~~~~-~~~~~~v~~G~d~~~~~~~~~G~~---- 201 (288)
T cd00954 137 PALTGVNLTLEQFLELFEIPNVIGVKFT--------ATDL-Y-DLERIRAA-SPEDKLVLNGFDEMLLSALALGAD---- 201 (288)
T ss_pred ccccCCCCCHHHHHHHhcCCCEEEEEeC--------CCCH-H-HHHHHHHh-CCCCcEEEEechHHHHHHHHcCCC----
Confidence 3 3210 0 12334433332 1110 0 11122221 2336777777755444332 0222
Q ss_pred CCCcccchhhcccChHHHHHHHHHHH
Q psy13907 300 KDNPLWCSAFLHSNRQAVIDTHRDYV 325 (698)
Q Consensus 300 ~~~~lws~~~~l~~Pe~V~~iH~~yl 325 (698)
-.++...++ -|+.+.++++.+.
T Consensus 202 ---G~i~~~~n~-~P~~~~~l~~~~~ 223 (288)
T cd00954 202 ---GAIGSTYNV-NGKRYRKIFEAFN 223 (288)
T ss_pred ---EEEeChhhh-CHHHHHHHHHHHH
Confidence 123455555 6888888888774
No 42
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=87.87 E-value=4.5 Score=42.22 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEE
Q psy13907 421 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISF 466 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~ 466 (698)
--+++++..++|+|++++++..+..+.+.+.+. .+.|+++..
T Consensus 162 ai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~----~~~Pl~~~~ 203 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA----PDVPLNVNM 203 (243)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc----CCCCEEEEe
Confidence 457888999999999999999988888877655 467887664
No 43
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=87.40 E-value=24 Score=38.21 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEec--CCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy13907 19 QLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSL--GSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGID 96 (698)
Q Consensus 19 eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSI--GP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD 96 (698)
.++.+|++..|++. .+.+|..++ -||...=+.|=-. . +.++.++-.+....|+-.+.++|+|
T Consensus 99 g~v~~air~iK~~~------------pdl~vi~DVcLc~YT~hGHcGil~-~---g~i~ND~Tl~~L~~~Als~A~AGAD 162 (322)
T PRK13384 99 GLLARMVRTIKAAV------------PEMMVIPDICFCEYTDHGHCGVLH-N---DEVDNDATVENLVKQSVTAAKAGAD 162 (322)
T ss_pred ChHHHHHHHHHHHC------------CCeEEEeeeecccCCCCCceeecc-C---CcCccHHHHHHHHHHHHHHHHcCCC
Confidence 46677777766654 245666654 4665443333111 1 2366678788888899999999999
Q ss_pred EEEEecCcCHHHHHHHHHHHHhc--CCCeEEEEEEE
Q psy13907 97 LLAIETLPAQEEAMVLAELIKEY--PGLKAWISFSC 130 (698)
Q Consensus 97 ~il~ETi~~l~Ea~aa~~a~~~~--~~~Pv~iSft~ 130 (698)
++.==-|-|- -+.++.+++.+. .+.+++ |-+.
T Consensus 163 iVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsa 196 (322)
T PRK13384 163 MLAPSAMMDG-QVKAIRQGLDAAGFEHVAIL-AHSA 196 (322)
T ss_pred eEeccccccc-HHHHHHHHHHHCCCCCCcee-ehhH
Confidence 9996666665 367777777763 456655 5443
No 44
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=87.16 E-value=9.7 Score=40.75 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=45.0
Q ss_pred CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCC--CCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChH
Q psy13907 121 GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNP--AQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPI 198 (698)
Q Consensus 121 ~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~--~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~ 198 (698)
+.|+++|+. |.+.++.++.+..... .++++|=+||+.|..- . .-..+-.-|+
T Consensus 90 ~~pl~~qi~---------g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~--------~---------~g~~l~~~~~ 143 (300)
T TIGR01037 90 PTPLIASVY---------GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK--------G---------GGIAIGQDPE 143 (300)
T ss_pred CCcEEEEee---------cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC--------C---------CccccccCHH
Confidence 569999984 4445554443322122 2489999999986431 0 0112334678
Q ss_pred HHHHHHHHHHHcCCCCCCCcCCCcCccEEeecC
Q psy13907 199 QLLSIELELAAAGKMPSGTTQIPFEAPLKAKPN 231 (698)
Q Consensus 199 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pn 231 (698)
.+.++++++++. . +.||+++=+
T Consensus 144 ~~~eiv~~vr~~------~-----~~pv~vKi~ 165 (300)
T TIGR01037 144 LSADVVKAVKDK------T-----DVPVFAKLS 165 (300)
T ss_pred HHHHHHHHHHHh------c-----CCCEEEECC
Confidence 888999988876 3 567776643
No 45
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=87.03 E-value=13 Score=39.15 Aligned_cols=53 Identities=23% Similarity=0.139 Sum_probs=31.7
Q ss_pred CccEEeecCCCCceeecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCc----eEEEecccc
Q psy13907 223 EAPLKAKPNRSLFETYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENK----LYLIDGGFS 285 (698)
Q Consensus 223 ~~~~~~~pnag~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~~i~dG~~g 285 (698)
+.++.++++.|.|+..+... .|....++... +|.+-. +.+.+.+ -+++|-++|
T Consensus 120 ~~~vV~m~~~g~p~~~~~~~---~~~~~~~~~~~---~~~~~i----~~~~~~Gi~~~~Ii~DPg~g 176 (257)
T cd00739 120 GAPLVLMHMRGTPKTMQENP---YYEDVVDEVLS---FLEARL----EAAESAGVARNRIILDPGIG 176 (257)
T ss_pred CCCEEEECCCCCCcccccCC---CcccHHHHHHH---HHHHHH----HHHHHcCCCHHHEEEecCCC
Confidence 67899999999998765432 35544444442 344333 3334444 468888766
No 46
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=86.34 E-value=18 Score=39.20 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEec--CCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy13907 19 QLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSL--GSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGID 96 (698)
Q Consensus 19 eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSI--GP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD 96 (698)
.++.+|++..|++. .+..|..++ -||...-++| -.. +-.+.++.++-.+....|+-.+.++|+|
T Consensus 97 g~v~~air~iK~~~------------pdl~vi~Dvclc~YT~hGHcG-il~-~~~g~idND~Tl~~Lak~Al~~A~AGAD 162 (324)
T PF00490_consen 97 GLVQRAIRAIKKAF------------PDLLVITDVCLCEYTSHGHCG-ILD-DEDGEIDNDETLERLAKQALSHAEAGAD 162 (324)
T ss_dssp SHHHHHHHHHHHHS------------TTSEEEEEE-STTTBTSSSSS-EB--CTTSSBEHHHHHHHHHHHHHHHHHHT-S
T ss_pred ChHHHHHHHHHHhC------------CCcEEEEecccccccCCCceE-EEE-CCCCeEecHHHHHHHHHHHHHHHHhCCC
Confidence 47777887777664 246666654 4666554443 110 0013577888888999999999999999
Q ss_pred EEEEecCcCHHHHHHHHHHHHhc--CCCeEEEEEEEc
Q psy13907 97 LLAIETLPAQEEAMVLAELIKEY--PGLKAWISFSCK 131 (698)
Q Consensus 97 ~il~ETi~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~ 131 (698)
++.==-|-|- .+.++.+++.+. .+.|++ |.+.+
T Consensus 163 iVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaK 197 (324)
T PF00490_consen 163 IVAPSDMMDG-RVGAIREALDEAGFSDVPIM-SYSAK 197 (324)
T ss_dssp EEEE-S--TT-HHHHHHHHHHHTTCTTSEEE-EEEEE
T ss_pred eeccccccCC-HHHHHHHHHHhCCCCCccEE-echHH
Confidence 9997666665 467777777763 567766 77765
No 47
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=85.53 E-value=42 Score=35.99 Aligned_cols=184 Identities=16% Similarity=0.056 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEe-c-----CcCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 144 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~E-T-----i~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~ 144 (698)
.++.+. ++..++.+++.|||.|++= | .-+.+|=+.+++.+.+. .+.||++... +.+..+
T Consensus 17 ~iD~~~----l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~---------~~~t~~ 83 (294)
T TIGR02313 17 DIDEEA----LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG---------ALNHDE 83 (294)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC---------cchHHH
Confidence 466654 4567788888999987642 2 22667777777765542 3478887663 334566
Q ss_pred HHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCc
Q psy13907 145 IARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEA 224 (698)
Q Consensus 145 ~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (698)
+++..+.....|++++.+ ..|-+ .+..++.+..+.+.+.++ + | +.
T Consensus 84 ai~~a~~A~~~Gad~v~v--~pP~y-----------------------~~~~~~~l~~~f~~ia~a------~---~-~l 128 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMV--IVPYY-----------------------NKPNQEALYDHFAEVADA------V---P-DF 128 (294)
T ss_pred HHHHHHHHHHcCCCEEEE--cCccC-----------------------CCCCHHHHHHHHHHHHHh------c---c-CC
Confidence 666554333467776554 22211 112568889999998886 3 1 57
Q ss_pred cEEeecCC---CCce---------eecCeeeeeeeccchhhhccccchhhhhHHHHHHHH--hhCceEEEeccccccccc
Q psy13907 225 PLKAKPNR---SLFE---------TYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFI--LENKLYLIDGGFSSQLSK 290 (698)
Q Consensus 225 ~~~~~pna---g~p~---------~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~i~dG~~gt~l~~ 290 (698)
||.+|=|- |..- ..+++.+.+.+. + .++..+.+.+ ...+..|+.|.-...+..
T Consensus 129 pv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~s--------s-----~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~ 195 (294)
T TIGR02313 129 PIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKES--------N-----KDFEHLNHLFLEAGRDFLLFCGIELLCLPM 195 (294)
T ss_pred CEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeC--------C-----CCHHHHHHHHHhcCCCeEEEEcchHHHHHH
Confidence 88888543 3211 012334333332 1 1122222221 234677777765544433
Q ss_pred cc-CCCCcCcCCCcccchhhcccChHHHHHHHHHHH
Q psy13907 291 HV-GEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYV 325 (698)
Q Consensus 291 ~~-g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl 325 (698)
.. |.+ -..+...|+ -|+...++++.|.
T Consensus 196 l~~Ga~-------G~is~~~n~-~P~~~~~l~~~~~ 223 (294)
T TIGR02313 196 LAIGAA-------GSIAATANV-EPKEVAELCEAAE 223 (294)
T ss_pred HHCCCC-------EEEecHHhh-CHHHHHHHHHHHH
Confidence 30 222 123445555 7888888888875
No 48
>PRK15063 isocitrate lyase; Provisional
Probab=85.51 E-value=31 Score=38.92 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCEEEeccc---------------CCHHHHHHHHHHHHh---cCCCeEEEEEEecCC-------------
Q psy13907 423 PRIEALIQGGIDLLAIETL---------------PAQEEAMVLAELIKE---YPGLKAWISFSCKDE------------- 471 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi---------------~~~~Eakaa~~a~~~---~~~~Pv~iS~t~~~~------------- 471 (698)
+.++.++++||-.|-+|-. -++.|...=+.|++. ..+.|.+|---.+..
T Consensus 165 ~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD 244 (428)
T PRK15063 165 ELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERD 244 (428)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccc
Confidence 4578889999999999975 234444443444432 134565554433221
Q ss_pred ------CccCCC-----CcHHHHHHHHHHhCCCCceEEEEcC--CChhhhHHHHHHhcCCCC--EEEecCCCCCcCCCCc
Q psy13907 472 ------KHTCHG-----DKFGLIARDVYAKNPAQLVAVGVNC--LAPHYVESLLTSAGRDVP--LLCCPNSGETFDPGQR 536 (698)
Q Consensus 472 ------g~l~~G-----~~l~~~v~~~~~~~~~~~~~iGlNC--~~p~~~~~~l~~l~~~~p--l~~yPNaG~~~d~~~g 536 (698)
.|+..| ..+.++++....... +.+.|=+-. ...++++.+.+.++...| +.+|+.+...+
T Consensus 245 ~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfn----- 318 (428)
T PRK15063 245 RPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFN----- 318 (428)
T ss_pred cccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecCCCCCcc-----
Confidence 133444 468888888764333 666665553 356788888888875557 78885442221
Q ss_pred ccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 537 IWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 537 ~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
|....++++++.+.+++.+.|.+++
T Consensus 319 -W~~~~~~~~~~~f~~eL~~~Gy~~~ 343 (428)
T PRK15063 319 -WKKNLDDATIAKFQRELGAMGYKFQ 343 (428)
T ss_pred -cccccCHHHHHHHHHHHHHcCceEE
Confidence 7656788999999999999995554
No 49
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.23 E-value=12 Score=39.80 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=44.0
Q ss_pred CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHH
Q psy13907 120 PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQ 199 (698)
Q Consensus 120 ~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~ 199 (698)
.+.|+++|+.. .+.++.+..+......++|+|=+|++.|..- + --..+-..|+.
T Consensus 88 ~~~p~ivsi~g---------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~--------~---------~g~~~~~~~~~ 141 (296)
T cd04740 88 FGTPVIASIAG---------STVEEFVEVAEKLADAGADAIELNISCPNVK--------G---------GGMAFGTDPEA 141 (296)
T ss_pred CCCcEEEEEec---------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCC--------C---------CcccccCCHHH
Confidence 46889988852 3344444333222235789999999886420 0 00112346788
Q ss_pred HHHHHHHHHHcCCCCCCCcCCCcCccEEee
Q psy13907 200 LLSIELELAAAGKMPSGTTQIPFEAPLKAK 229 (698)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (698)
+.++++.+++. . +.||+++
T Consensus 142 ~~eiv~~vr~~------~-----~~Pv~vK 160 (296)
T cd04740 142 VAEIVKAVKKA------T-----DVPVIVK 160 (296)
T ss_pred HHHHHHHHHhc------c-----CCCEEEE
Confidence 88999988876 3 5666665
No 50
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=85.10 E-value=22 Score=37.18 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=68.4
Q ss_pred HHHHHHHHHhCCCCEEEecccC--------------CHHHHHHHHHHHHhcCC--CeEEEEEEecCCCccCCC-CcHHHH
Q psy13907 421 HRPRIEALIQGGIDLLAIETLP--------------AQEEAMVLAELIKEYPG--LKAWISFSCKDEKHTCHG-DKFGLI 483 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~--------------~~~Eakaa~~a~~~~~~--~Pv~iS~t~~~~g~l~~G-~~l~~~ 483 (698)
..+.++.+.++|++.+.+|-.. +..|...-++++++..+ .+++|-.-. +.. ..| ..+.++
T Consensus 86 ~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART--Da~-~~~~~~~~ea 162 (243)
T cd00377 86 VARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART--DAL-LAGEEGLDEA 162 (243)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc--Cch-hccCCCHHHH
Confidence 3455888888999999997533 67777777777775322 244444432 222 233 578899
Q ss_pred HHHHHHhCCCCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCC
Q psy13907 484 ARDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSG 528 (698)
Q Consensus 484 v~~~~~~~~~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG 528 (698)
++.......++.+++-+-+ ..+++++.+.+.. +.|+.+|+..+
T Consensus 163 i~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~--~~Pl~~~~~~~ 206 (243)
T cd00377 163 IERAKAYAEAGADGIFVEGLKDPEEIRAFAEAP--DVPLNVNMTPG 206 (243)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcC--CCCEEEEecCC
Confidence 9888654456777777776 4667777776664 68999987654
No 51
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=84.78 E-value=39 Score=36.36 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEe-cc-----cCCHHHHHHHHHHHHh-c-CCCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKE-Y-PGLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~-ET-----i~~~~Eakaa~~a~~~-~-~~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.++++. ++.+++.|++.|||.|++ -| .-+..|-+.+++.+.+ . .+.||++.+. + +..+
T Consensus 24 ~iD~~~----l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~-~t~~ 89 (303)
T PRK03620 24 SFDEAA----YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG---------G-GTAQ 89 (303)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------C-CHHH
Confidence 466654 667788888899999865 22 2355666677765553 2 3489887652 2 4566
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL 555 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~ 555 (698)
+++........+++++.+-- ...+.+..+.+.+. ++.|+++|-+.|. +.+++.+.+ +.
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~-----------~l~~~~l~~----L~ 154 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNA-----------VLTADTLAR----LA 154 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHH----HH
Confidence 66665433335556655543 13456777777775 7899999964331 345555544 43
Q ss_pred HcCCeEEe--ecCCCchHHHHHHHhcc
Q psy13907 556 DTGVKYVG--GCCRTNADDMKNVNQVP 580 (698)
Q Consensus 556 ~~G~~iiG--GCCGTtP~hI~al~~~v 580 (698)
+.--||+| =++| +..+++++.+.+
T Consensus 155 ~~~pni~giK~s~~-d~~~~~~~~~~~ 180 (303)
T PRK03620 155 ERCPNLVGFKDGVG-DIELMQRIVRAL 180 (303)
T ss_pred hhCCCEEEEEeCCC-CHHHHHHHHHHc
Confidence 22235555 3444 578888876554
No 52
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=84.05 E-value=41 Score=36.41 Aligned_cols=94 Identities=17% Similarity=0.269 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEec--CCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy13907 19 QLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSL--GSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGID 96 (698)
Q Consensus 19 eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSI--GP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD 96 (698)
.++.+|++..|+.. .+.+|..++ -||...=+.|= ..+ +.++.++-.+...+|+-.+.++|+|
T Consensus 94 g~v~~air~iK~~~------------p~l~vi~DVclc~YT~hGHcGi-l~~---~~idND~Tl~~L~~~Avs~A~AGAD 157 (320)
T cd04823 94 NLVCRAIRAIKEAF------------PELGIITDVALDPYTSHGHDGI-VRD---GGILNDETVEVLCKQALVQAEAGAD 157 (320)
T ss_pred ChHHHHHHHHHHhC------------CCcEEEEeeeccCCCCCCccee-ccC---CcCcCHHHHHHHHHHHHHHHHhCCC
Confidence 46677777776553 246666654 36554333331 111 1266778888888899999999999
Q ss_pred EEEEecCcCHHHHHHHHHHHHhc--CCCeEEEEEEE
Q psy13907 97 LLAIETLPAQEEAMVLAELIKEY--PGLKAWISFSC 130 (698)
Q Consensus 97 ~il~ETi~~l~Ea~aa~~a~~~~--~~~Pv~iSft~ 130 (698)
++.==-|-|- -+.++.+++.+. .+.|++ |-+.
T Consensus 158 iVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsa 191 (320)
T cd04823 158 IVAPSDMMDG-RIGAIREALDAEGFTNVSIL-SYAA 191 (320)
T ss_pred EEEcccchhh-HHHHHHHHHHHCCCCCCcee-echH
Confidence 9996555544 366777777763 456765 5543
No 53
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.89 E-value=14 Score=38.59 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=49.4
Q ss_pred cEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEE
Q psy13907 385 VRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI 464 (698)
Q Consensus 385 ~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~i 464 (698)
++|-+=+|-+..++....-|.+.+ .+.++ .+...++++++.++|+|++++|.+ +..+++.+.+. .+.|+..
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~---~~~~~-~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~----~~~P~~~ 196 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQY---RGDEA-GEQLIADALAYAPAGADLIVMECV-PVELAKQITEA----LAIPLAG 196 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeec---cCHHH-HHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHh----CCCCEEE
Confidence 567777776553332111122211 23344 344667899999999999999988 88887776654 3578765
Q ss_pred EEEecCCCccCCCC
Q psy13907 465 SFSCKDEKHTCHGD 478 (698)
Q Consensus 465 S~t~~~~g~l~~G~ 478 (698)
..+ +.-.+|+
T Consensus 197 ~ga----g~~~dgq 206 (240)
T cd06556 197 IGA----GSGTDGQ 206 (240)
T ss_pred Eec----CcCCCce
Confidence 442 2235665
No 54
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=82.84 E-value=55 Score=35.04 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~E-T-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.++++ .++..++.+++.|||-|++= | .-+..|-+.+++.+.+. .+.||++... .++.+
T Consensus 22 ~iD~~----~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~----------~~t~~ 87 (296)
T TIGR03249 22 SFDEA----AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG----------GNTSD 87 (296)
T ss_pred CcCHH----HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC----------ccHHH
Confidence 46664 46778888899999998763 2 34667777777765542 3479887652 13566
Q ss_pred HHHHHHHhCCCCceEEEEcC--C---ChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH
Q psy13907 483 IARDVYAKNPAQLVAVGVNC--L---APHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL 555 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC--~---~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~ 555 (698)
+++........+++++.+-- . ..+.+..+.+.+. .+.|+++|=+.| . +.+++.+. ++.
T Consensus 88 ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g---------~--~l~~~~~~----~La 152 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDN---------A--VLNADTLE----RLA 152 (296)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCC---------C--CCCHHHHH----HHH
Confidence 66665433335566666544 1 3355677777765 679999994222 1 34555444 344
Q ss_pred HcCCeEEee-cCCCchHHHHHHHhcc
Q psy13907 556 DTGVKYVGG-CCRTNADDMKNVNQVP 580 (698)
Q Consensus 556 ~~G~~iiGG-CCGTtP~hI~al~~~v 580 (698)
+.--||+|= -+..+..+++++.+..
T Consensus 153 ~~~~nvvgiKds~~d~~~~~~~~~~~ 178 (296)
T TIGR03249 153 DRCPNLVGFKDGIGDMEQMIEITQRL 178 (296)
T ss_pred hhCCCEEEEEeCCCCHHHHHHHHHHc
Confidence 433355551 1223667777776543
No 55
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=82.76 E-value=20 Score=37.81 Aligned_cols=100 Identities=16% Similarity=0.275 Sum_probs=62.7
Q ss_pred CeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 46 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 46 ~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
..+|.+++ |||.+. .+.+++ .+.-.+.+.++|++.+-+|-- .|....++++.+ .++||+
T Consensus 73 ~p~viaD~-~fg~y~-------------~~~~~a---v~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~-agipV~ 131 (254)
T cd06557 73 RALVVADM-PFGSYQ-------------TSPEQA---LRNAARLMKEAGADAVKLEGG---AEVAETIRALVD-AGIPVM 131 (254)
T ss_pred CCeEEEeC-CCCccc-------------CCHHHH---HHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHH-cCCCee
Confidence 35677888 777532 223443 333344445599999999974 477777778777 689988
Q ss_pred EEEEEcCC------CccCCCCC---HHHHHHHHHhhCCCCceEEEEcCCC
Q psy13907 126 ISFSCKDE------KHTCHGDK---FGLIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 126 iSft~~~~------g~l~~G~~---~~~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
-.+-+.+. |...-|.+ .+++++..+.....|+++|=+-|..
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~ 181 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP 181 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 55554432 22223434 4555555543345799999999985
No 56
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=82.72 E-value=54 Score=35.45 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEe--cCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy13907 19 QLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGS--LGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGID 96 (698)
Q Consensus 19 eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGS--IGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD 96 (698)
.+..+|++..|++. .+..|..+ +-||...=++|= ... +.++.++-.+....|+-.+.++|+|
T Consensus 89 g~v~~air~iK~~~------------p~l~vi~DvcLc~YT~hGHcGi-l~~---~~idND~Tl~~L~k~Als~A~AGAD 152 (314)
T cd00384 89 GIVQRAIRAIKEAV------------PELVVITDVCLCEYTDHGHCGI-LKD---DYVDNDATLELLAKIAVSHAEAGAD 152 (314)
T ss_pred ChHHHHHHHHHHhC------------CCcEEEEeeeccCCCCCCccee-ccC---CcCccHHHHHHHHHHHHHHHHcCCC
Confidence 46777777777654 23555554 446654433331 111 1366788888888899999999999
Q ss_pred EEEEecCcCHHHHHHHHHHHHhc--CCCeEEEEEEE
Q psy13907 97 LLAIETLPAQEEAMVLAELIKEY--PGLKAWISFSC 130 (698)
Q Consensus 97 ~il~ETi~~l~Ea~aa~~a~~~~--~~~Pv~iSft~ 130 (698)
++.==-|-|- -+.++.+++.+. .+.|++ |-+.
T Consensus 153 iVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-sYsa 186 (314)
T cd00384 153 IVAPSDMMDG-RVAAIREALDEAGFSDVPIM-SYSA 186 (314)
T ss_pred eeeccccccc-HHHHHHHHHHHCCCCCCcee-ecHH
Confidence 9996655554 367777777763 456665 5443
No 57
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=82.26 E-value=60 Score=34.20 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----cCCHHHHHHHHHHHHhcC--CCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEYP--GLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~E-T-----i~~~~Eakaa~~a~~~~~--~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.+++ +.++.+++.|++.|||.+++= | ..+..|-+.+++.+.+.. +.|+++... +.+..+
T Consensus 14 ~iD~----~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~ 80 (281)
T cd00408 14 EVDL----DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTRE 80 (281)
T ss_pred CcCH----HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHH
Confidence 4666 446677888888999998743 2 335678788887776532 579887763 234556
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL 555 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~ 555 (698)
+++........+++++.+-- .+.+.+..+.+.+. .+.|+++|-+-+ ..| .+.+++.+.+.+
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~-----~tg---~~l~~~~~~~L~---- 148 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPG-----RTG---VDLSPETIARLA---- 148 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcc-----ccC---CCCCHHHHHHHh----
Confidence 66655433335666766655 14466777777765 689999996532 112 134565555443
Q ss_pred HcCCeEEeecCC-CchHHHHHHHhcc
Q psy13907 556 DTGVKYVGGCCR-TNADDMKNVNQVP 580 (698)
Q Consensus 556 ~~G~~iiGGCCG-TtP~hI~al~~~v 580 (698)
+ .-|++|==.. ....++..+.+..
T Consensus 149 ~-~~~v~giK~s~~d~~~~~~~~~~~ 173 (281)
T cd00408 149 E-HPNIVGIKDSSGDLDRLTRLIALL 173 (281)
T ss_pred c-CCCEEEEEeCCCCHHHHHHHHHhc
Confidence 2 3456663222 3677777776654
No 58
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=81.37 E-value=7.7 Score=40.86 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCcCH
Q psy13907 75 TPQELIDYHRPRIEALIQGGIDLLAIETLPAQ 106 (698)
Q Consensus 75 s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l 106 (698)
+.+++.++-.+.++.|.++|+|.+++|.+.|.
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 77999999999999999999999999998765
No 59
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=81.36 E-value=38 Score=36.79 Aligned_cols=185 Identities=16% Similarity=0.168 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE
Q psy13907 358 LIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSE-YRGDYIDSTTPQELIDYHRPRIEALIQGGIDLL 436 (698)
Q Consensus 358 ln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~e-y~g~y~~~~t~del~~~y~~qi~~L~~~GvDll 436 (698)
+...+++..|+... .--+..=-++-||...=+.|.- +. .+.++-|+-.+...+|+-.+.++|+|++
T Consensus 98 ~v~~air~iK~~~p----------dl~vi~Dvclc~YT~hGHcGil~~~---~g~idND~Tl~~Lak~Al~~A~AGADiV 164 (324)
T PF00490_consen 98 LVQRAIRAIKKAFP----------DLLVITDVCLCEYTSHGHCGILDDE---DGEIDNDETLERLAKQALSHAEAGADIV 164 (324)
T ss_dssp HHHHHHHHHHHHST----------TSEEEEEE-STTTBTSSSSSEB-CT---TSSBEHHHHHHHHHHHHHHHHHHT-SEE
T ss_pred hHHHHHHHHHHhCC----------CcEEEEecccccccCCCceEEEECC---CCeEecHHHHHHHHHHHHHHHHhCCCee
Confidence 56667766666542 1123333457788755555533 11 2468899999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHHHh--cCCCeEEEEEEecC-------------------CC--ccCCCCcHHHHHHHHHHhCCC
Q psy13907 437 AIETLPAQEEAMVLAELIKE--YPGLKAWISFSCKD-------------------EK--HTCHGDKFGLIARDVYAKNPA 493 (698)
Q Consensus 437 l~ETi~~~~Eakaa~~a~~~--~~~~Pv~iS~t~~~-------------------~g--~l~~G~~l~~~v~~~~~~~~~ 493 (698)
.-=-|-|- ...++..++.+ +.+.|+| |.+.+- +. .-++-..-.+++.........
T Consensus 165 APSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~E 242 (324)
T PF00490_consen 165 APSDMMDG-RVGAIREALDEAGFSDVPIM-SYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEE 242 (324)
T ss_dssp EE-S--TT-HHHHHHHHHHHTTCTTSEEE-EEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHT
T ss_pred ccccccCC-HHHHHHHHHHhCCCCCccEE-echHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhh
Confidence 98777665 45677777775 3467766 777531 00 112333344554444322235
Q ss_pred CceEEEEcCCChhhhHHHHHHhc--CCCCEEEecCCCCCc----CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 494 QLVAVGVNCLAPHYVESLLTSAG--RDVPLLCCPNSGETF----DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 494 ~~~~iGlNC~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~----d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
+.+.+.|-=..| ...+++.++ .+.|+.+|=-+|+-- -...| |. .....+.+....+..+|+.+|
T Consensus 243 GAD~lMVKPal~--YLDIi~~~k~~~~~P~~aYqVSGEYaMikaAa~~G-~~--d~~~~~~Esl~~~kRAGAd~I 312 (324)
T PF00490_consen 243 GADILMVKPALP--YLDIIRRVKERFDLPVAAYQVSGEYAMIKAAAQNG-WI--DEKRVVLESLLSIKRAGADII 312 (324)
T ss_dssp T-SEEEEESSGG--GHHHHHHHHHHCTS-EEEEETHHHHHHHHHHHHTT-SS---HHHHHHHHHHHHHHHT-SEE
T ss_pred CCCEEEeecchh--HHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHCC-Cc--chhhHHHHHHHHHHHcCCCEE
Confidence 566777765444 455555555 689999999988521 11234 62 112346677777888898876
No 60
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=81.34 E-value=62 Score=35.17 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEec--CCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy13907 19 QLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSL--GSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGID 96 (698)
Q Consensus 19 eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSI--GP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD 96 (698)
.++.+|++..|++. .+.+|..++ -||...=++| -.+. +.++.++-.+....|+-.+.++|+|
T Consensus 97 g~v~rair~iK~~~------------p~l~vi~DVcLc~YT~hGHcG-il~~---g~idND~Tl~~L~~~Al~~A~AGaD 160 (323)
T PRK09283 97 GLVQRAIRAIKKAF------------PELGVITDVCLDEYTSHGHCG-ILED---GYVDNDETLELLAKQALSQAEAGAD 160 (323)
T ss_pred CHHHHHHHHHHHhC------------CCcEEEEeeeccCCCCCCcee-cccC---CcCcCHHHHHHHHHHHHHHHHhCCC
Confidence 36677777766553 246666654 4665443333 1111 2356788888888899999999999
Q ss_pred EEEEecCcCHHHHHHHHHHHHhc--CCCeEEEEEE
Q psy13907 97 LLAIETLPAQEEAMVLAELIKEY--PGLKAWISFS 129 (698)
Q Consensus 97 ~il~ETi~~l~Ea~aa~~a~~~~--~~~Pv~iSft 129 (698)
++.==-|-|- -+.++.+++.+. .+.+++ |-+
T Consensus 161 iVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYs 193 (323)
T PRK09283 161 IVAPSDMMDG-RVGAIREALDEAGFTDVPIM-SYS 193 (323)
T ss_pred EEEccccccc-HHHHHHHHHHHCCCCCCcee-ecH
Confidence 9996655554 367777777763 456655 544
No 61
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=81.30 E-value=27 Score=35.17 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCEEEe-----cccCCHHHHHHHHHHHHhcCCCeEEEEEEecC
Q psy13907 421 HRPRIEALIQGGIDLLAI-----ETLPAQEEAMVLAELIKEYPGLKAWISFSCKD 470 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~-----ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~ 470 (698)
+.++++.+.++|+|.|-+ ..+++..-....++.+++....|+-+-+.+.+
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d 72 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN 72 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCC
Confidence 677899999999999988 55554322233444444433344434444433
No 62
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=80.98 E-value=27 Score=36.85 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecC------CCccCCCCcH---HHHHHHHHHhC
Q psy13907 421 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKD------EKHTCHGDKF---GLIARDVYAKN 491 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~------~g~l~~G~~l---~~~v~~~~~~~ 491 (698)
.+.-.+.+.++|++.+-+|-- .|....++++.+ .+.||+--+-++. .|...-|++- .++++......
T Consensus 93 v~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~ 168 (254)
T cd06557 93 LRNAARLMKEAGADAVKLEGG---AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALE 168 (254)
T ss_pred HHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHH
Confidence 334445555699999999985 466666777776 4789884443321 2233445554 45555554333
Q ss_pred CCCceEEEEcCCChhhhHHHHHHhcCCCCEE
Q psy13907 492 PAQLVAVGVNCLAPHYVESLLTSAGRDVPLL 522 (698)
Q Consensus 492 ~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~ 522 (698)
.++.++|=+-|...+.++.+-+.++ .|++
T Consensus 169 ~AGA~~i~lE~v~~~~~~~i~~~v~--iP~i 197 (254)
T cd06557 169 EAGAFALVLECVPAELAKEITEALS--IPTI 197 (254)
T ss_pred HCCCCEEEEcCCCHHHHHHHHHhCC--CCEE
Confidence 5788999999986666666666663 5543
No 63
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=80.91 E-value=69 Score=34.76 Aligned_cols=223 Identities=16% Similarity=0.198 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEE--ecC
Q psy13907 315 QAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAG--SLG 392 (698)
Q Consensus 315 e~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAG--siG 392 (698)
+.+.+.-++-++.|-.-+.. |...+...++..|-....-..+...|++..|+... ...|.. ++-
T Consensus 54 d~l~~~v~~~~~~Gi~~v~l--Fgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p------------~l~vi~DVclc 119 (320)
T cd04823 54 DELLKEAEEAVDLGIPAVAL--FPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFP------------ELGIITDVALD 119 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEE--ecCCCcccCCcccccccCCCChHHHHHHHHHHhCC------------CcEEEEeeecc
Confidence 33333446667777653332 33322222222222111112356677776665432 233433 566
Q ss_pred CcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh--cCCCeEEEEEEec-
Q psy13907 393 SYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE--YPGLKAWISFSCK- 469 (698)
Q Consensus 393 P~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~--~~~~Pv~iS~t~~- 469 (698)
||...=+.|.-.. +.++-|+-.+...+|+-.+.++|+|++.-=-|-|- ...++.+++.+ +.+.|+| |-+.+
T Consensus 120 ~YT~hGHcGil~~----~~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaKy 193 (320)
T cd04823 120 PYTSHGHDGIVRD----GGILNDETVEVLCKQALVQAEAGADIVAPSDMMDG-RIGAIREALDAEGFTNVSIL-SYAAKY 193 (320)
T ss_pred CCCCCCcceeccC----CcCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhh-HHHHHHHHHHHCCCCCCcee-echHHh
Confidence 7764333332211 23788999999999999999999999998666655 35677777775 3456765 55432
Q ss_pred ---------C---------CC--ccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc--CCCCEEEecCC
Q psy13907 470 ---------D---------EK--HTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG--RDVPLLCCPNS 527 (698)
Q Consensus 470 ---------~---------~g--~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~--~~~pl~~yPNa 527 (698)
+ +. .-++-..-.+++........-+.+-+.|-=..| ...+++.++ .+.|+.+|=-+
T Consensus 194 aS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~--YLDIi~~~k~~~~lPvaaYqVS 271 (320)
T cd04823 194 ASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMP--YLDIIRRVKDEFGVPTFAYQVS 271 (320)
T ss_pred hhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHhcCCCEEEEEcc
Confidence 0 00 112222333444444322234566666655333 344555554 68999999999
Q ss_pred CCCc----CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 528 GETF----DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 528 G~~~----d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
|+-- -...| |. ++ ...+.+.+..+..+|+.+|
T Consensus 272 GEYaMikaAa~~G-~~-d~-~~~~~Esl~~ikRAGAd~I 307 (320)
T cd04823 272 GEYAMLKAAAQNG-WL-DE-DKVMLESLLAFKRAGADGI 307 (320)
T ss_pred HHHHHHHHHHHcC-CC-cH-HHHHHHHHHHHHhcCCCEE
Confidence 8521 11234 62 11 2346777777888998876
No 64
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=80.80 E-value=8.8 Score=41.59 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=61.9
Q ss_pred hCCCCEEEEecCcCHHHHH---HHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCCh
Q psy13907 92 QGGIDLLAIETLPAQEEAM---VLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAP 167 (698)
Q Consensus 92 ~~GVD~il~ETi~~l~Ea~---aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p 167 (698)
+.|+|++.-|.+..-.=.. ...+.++.. .+.|+++++. |.+.++.++.+......++|+|-+||+.|
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~---------g~~~~~~~~aa~~~~~~G~d~IelN~gcP 99 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF---------GSDPDTMAEAAKINEELGADIIDINMGCP 99 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe---------CCCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 4579999999887542111 111222211 3689988884 44455444443322346899999999986
Q ss_pred hhhHHHHHHhHhhcccccccccccc-cCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCC
Q psy13907 168 HYVESLLTSAEVEGQSLELPVNNTL-ISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRS 233 (698)
Q Consensus 168 ~~i~~~l~~~~~~~~~~~~p~~~~~-~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag 233 (698)
.. ...+. . -|. +-.-|+.+.++++.+.+. . +.||+++=..|
T Consensus 100 ~~--~~~~~----~--------~Gs~l~~~~~~~~ei~~~vr~~------~-----~~pv~vKir~g 141 (319)
T TIGR00737 100 VP--KITKK----G--------AGSALLRDPDLIGKIVKAVVDA------V-----DIPVTVKIRIG 141 (319)
T ss_pred HH--HhcCC----C--------ccchHhCCHHHHHHHHHHHHhh------c-----CCCEEEEEEcc
Confidence 21 11110 0 111 123578888999988775 3 56777764444
No 65
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=80.60 E-value=20 Score=36.53 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhCCCCEEEecccC--CHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCce
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLP--AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 496 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~--~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~ 496 (698)
+.....++.+.++|+|.|++-.-. +..+....+.++|+..++|+++ |- . +...+..-+++ -..
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil-fp--~-----~~~~i~~~aD~-------~~~ 75 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL-FP--G-----NVNGLSRYADA-------VFF 75 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE-EC--C-----CccccCcCCCE-------EEE
Confidence 334456778889999999997433 5567777889999877899997 41 1 11111100111 112
Q ss_pred EEEEcCCChhhhH-------HHHHHhc----CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEE--e
Q psy13907 497 AVGVNCLAPHYVE-------SLLTSAG----RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV--G 563 (698)
Q Consensus 497 ~iGlNC~~p~~~~-------~~l~~l~----~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii--G 563 (698)
---+|-..|+.+- +.+++++ ...++++-|.+--.+- ..-.-.++..|++.+.++...-..|++++ =
T Consensus 76 ~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v-~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le 154 (205)
T TIGR01769 76 MSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYV-GKAREIPYNKPEIAAAYCLAAKYFGMKWVYLE 154 (205)
T ss_pred EEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeee-cCcccCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2335655555432 2234444 3456666665521110 00001245677777776665556675532 2
Q ss_pred ecC--C--CchHHHHHHHhcc
Q psy13907 564 GCC--R--TNADDMKNVNQVP 580 (698)
Q Consensus 564 GCC--G--TtP~hI~al~~~v 580 (698)
-|- + .+++.|+++++.+
T Consensus 155 ~~sGa~~~v~~e~i~~Vk~~~ 175 (205)
T TIGR01769 155 AGSGASYPVNPETISLVKKAS 175 (205)
T ss_pred cCCCCCCCCCHHHHHHHHHhh
Confidence 222 3 5699999999876
No 66
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=80.47 E-value=40 Score=36.15 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=80.5
Q ss_pred HHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCC
Q psy13907 325 VRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEY 404 (698)
Q Consensus 325 l~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey 404 (698)
+++|.|.|... +.+|.......++.+.+++.+....+++.||+.-.. -...|.-+.|+ +|
T Consensus 89 ~~~g~~~v~i~-~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~----------v~~~i~~~~~~---------~~ 148 (287)
T PRK05692 89 LAAGADEVAVF-ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVR----------VRGYVSCVLGC---------PY 148 (287)
T ss_pred HHcCCCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE----------EEEEEEEEecC---------CC
Confidence 47899987666 456665555556777777767777777776664210 01123333332 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcH
Q psy13907 405 RGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKF 480 (698)
Q Consensus 405 ~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l 480 (698)
.| ..+. +++.+.++.+.+.|+|.|-+- |+ -...++...+..+++. ++.| +++-+.+ ..|..+
T Consensus 149 ~~----~~~~----~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~H~Hn----~~Gla~ 214 (287)
T PRK05692 149 EG----EVPP----EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAGHFHD----TYGQAL 214 (287)
T ss_pred CC----CCCH----HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEEEecC----CCCcHH
Confidence 22 2343 556677777888999998665 33 3566777777777753 2244 5787777 578888
Q ss_pred HHHHHHHH
Q psy13907 481 GLIARDVY 488 (698)
Q Consensus 481 ~~~v~~~~ 488 (698)
..++.++.
T Consensus 215 AN~laA~~ 222 (287)
T PRK05692 215 ANIYASLE 222 (287)
T ss_pred HHHHHHHH
Confidence 87777774
No 67
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=80.35 E-value=12 Score=39.69 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=44.4
Q ss_pred CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHH
Q psy13907 120 PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQ 199 (698)
Q Consensus 120 ~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~ 199 (698)
.+.|+++|+.. .+.++..+.+......++++|-+||+.|.... ...+...|..
T Consensus 97 ~~~pvi~si~g---------~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~------------------~~~~~~~~~~ 149 (289)
T cd02810 97 PGQPLIASVGG---------SSKEDYVELARKIERAGAKALELNLSCPNVGG------------------GRQLGQDPEA 149 (289)
T ss_pred CCCeEEEEecc---------CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC------------------CcccccCHHH
Confidence 47899999843 23444433332222358999999998864210 0012236778
Q ss_pred HHHHHHHHHHcCCCCCCCcCCCcCccEEeecC
Q psy13907 200 LLSIELELAAAGKMPSGTTQIPFEAPLKAKPN 231 (698)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pn 231 (698)
+.++++++++. . +.||+++=+
T Consensus 150 ~~eiv~~vr~~------~-----~~pv~vKl~ 170 (289)
T cd02810 150 VANLLKAVKAA------V-----DIPLLVKLS 170 (289)
T ss_pred HHHHHHHHHHc------c-----CCCEEEEeC
Confidence 88888888775 3 566666533
No 68
>PRK00865 glutamate racemase; Provisional
Probab=80.20 E-value=21 Score=37.59 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHH
Q psy13907 410 DSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 489 (698)
Q Consensus 410 ~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~ 489 (698)
+.-|.+++.++-.+.++.|.+.|+|++++=...... .++..+++..++||+ + + ..++.....
T Consensus 45 G~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~---~~l~~lr~~~~iPvi-g--i------------~~a~~~a~~ 106 (261)
T PRK00865 45 GEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA---VALPDLRERYDIPVV-G--I------------VPAIKPAAA 106 (261)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH---HHHHHHHHhCCCCEE-e--e------------HHHHHHHHH
Confidence 467899999999999999999999999886544321 255667765678965 3 1 123333321
Q ss_pred hCCCCceEEEEcCCCh----hhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCC-eEEee
Q psy13907 490 KNPAQLVAVGVNCLAP----HYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGV-KYVGG 564 (698)
Q Consensus 490 ~~~~~~~~iGlNC~~p----~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~-~iiGG 564 (698)
. ..-.-||+=.+.. ......++..+....+...|..++...-..|.+........+.++++.+.+.|+ .||=|
T Consensus 107 ~--~~~~~igVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILG 184 (261)
T PRK00865 107 L--TRNGRIGVLATPGTVKSAAYRDLIARFAPDCQVESLACPELVPLVEAGILGGPVTLEVLREYLAPLLAAGIDTLVLG 184 (261)
T ss_pred h--cCCCeEEEEECHHHhhchHHHHHHHHhCCCCEEEEecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 1 1123466665432 234555555544455556776643221122212111122345666777767783 34555
Q ss_pred cC
Q psy13907 565 CC 566 (698)
Q Consensus 565 CC 566 (698)
|-
T Consensus 185 CT 186 (261)
T PRK00865 185 CT 186 (261)
T ss_pred Cc
Confidence 63
No 69
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=80.14 E-value=22 Score=38.09 Aligned_cols=144 Identities=7% Similarity=-0.044 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCEEEec------ccCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGG-IDLLAIE------TLPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFG 481 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~G-vDlll~E------Ti~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~ 481 (698)
.+++ +.++.+++.+++.| ||.|++= ..-+.+|-+..++.+.+. .++||++... +.+..
T Consensus 17 ~iD~----~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~ 83 (290)
T TIGR00683 17 TINE----KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLK 83 (290)
T ss_pred CcCH----HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHH
Confidence 4555 44567778888899 9998653 445677877777766643 2478887763 23456
Q ss_pred HHHHHHHHhCCCCceEEEEc-----CCChhhhHHHHHHhc--C-CCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHH
Q psy13907 482 LIARDVYAKNPAQLVAVGVN-----CLAPHYVESLLTSAG--R-DVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPR 553 (698)
Q Consensus 482 ~~v~~~~~~~~~~~~~iGlN-----C~~p~~~~~~l~~l~--~-~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~ 553 (698)
++++........+++++.+- +...+.+..+.+.+. . +.|+++|-|-+. .| . +.+++.+.+
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~-----tg-~--~l~~~~i~~---- 151 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFL-----TG-V--NMGIEQFGE---- 151 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccc-----cc-c--CcCHHHHHH----
Confidence 67766643333455555442 234567888888874 4 799999976531 12 1 345554443
Q ss_pred HHHcCCeEEee-cCCCchHHHHHHHhcc
Q psy13907 554 WLDTGVKYVGG-CCRTNADDMKNVNQVP 580 (698)
Q Consensus 554 ~~~~G~~iiGG-CCGTtP~hI~al~~~v 580 (698)
+.+. -||+|= .+...+.++..+.+..
T Consensus 152 L~~~-pnv~giK~s~~d~~~~~~~~~~~ 178 (290)
T TIGR00683 152 LYKN-PKVLGVKFTAGDFYLLERLKKAY 178 (290)
T ss_pred HhcC-CCEEEEEeCCCCHHHHHHHHHhC
Confidence 3332 466662 1223677887776543
No 70
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=79.94 E-value=81 Score=34.14 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE
Q psy13907 357 QLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLL 436 (698)
Q Consensus 357 eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDll 436 (698)
.+...|++..|++..+ --++.=-++-||...=+.|.-.. +.++-|+-.+.+.+|+-...++|+|++
T Consensus 89 g~v~~air~iK~~~p~----------l~vi~DvcLc~YT~hGHcGil~~----~~idND~Tl~~L~k~Als~A~AGADiV 154 (314)
T cd00384 89 GIVQRAIRAIKEAVPE----------LVVITDVCLCEYTDHGHCGILKD----DYVDNDATLELLAKIAVSHAEAGADIV 154 (314)
T ss_pred ChHHHHHHHHHHhCCC----------cEEEEeeeccCCCCCCcceeccC----CcCccHHHHHHHHHHHHHHHHcCCCee
Confidence 3667777776665422 11233345677764434443222 247889999999999999999999999
Q ss_pred EecccCCHHHHHHHHHHHHh--cCCCeEEEEEEec----------C---------CCc--cCCCCcHHHHHHHHHHhCCC
Q psy13907 437 AIETLPAQEEAMVLAELIKE--YPGLKAWISFSCK----------D---------EKH--TCHGDKFGLIARDVYAKNPA 493 (698)
Q Consensus 437 l~ETi~~~~Eakaa~~a~~~--~~~~Pv~iS~t~~----------~---------~g~--l~~G~~l~~~v~~~~~~~~~ 493 (698)
.-=-|-|- ...++.+++.+ +.+.|+| |-+.+ + +.+ -++-..-.+++..+......
T Consensus 155 APSdMMDG-rV~aIR~aLd~~g~~~v~Im-sYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~E 232 (314)
T cd00384 155 APSDMMDG-RVAAIREALDEAGFSDVPIM-SYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEE 232 (314)
T ss_pred eccccccc-HHHHHHHHHHHCCCCCCcee-ecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHh
Confidence 98777765 45677778775 3456655 54332 0 001 12223333454444322234
Q ss_pred CceEEEEcCCChhhhHHHHHHhc--CCCCEEEecCCCCCc----CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 494 QLVAVGVNCLAPHYVESLLTSAG--RDVPLLCCPNSGETF----DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 494 ~~~~iGlNC~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~----d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
+.+-+.|-=..| .+.+++.++ .+.|+.+|=-+|+-- -...| |. + ....+.+....+..+|+.+|
T Consensus 233 GAD~lMVKPal~--YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G-~i-d-~~~~~~Esl~~~kRAGAd~I 302 (314)
T cd00384 233 GADILMVKPALA--YLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNG-WI-D-EERVVLESLTSIKRAGADLI 302 (314)
T ss_pred CCCEEEEcCCch--HHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcC-Cc-c-HHHHHHHHHHHHHhcCCCEE
Confidence 566666655333 444555554 689999999998521 11234 62 1 12346677777888998876
No 71
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=79.67 E-value=79 Score=33.76 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=63.4
Q ss_pred HHHHHHhCCCCEEEecccCCHH-------------------------HHHHHHHHHHh---cCCCeEEEEEEecCCCccC
Q psy13907 424 RIEALIQGGIDLLAIETLPAQE-------------------------EAMVLAELIKE---YPGLKAWISFSCKDEKHTC 475 (698)
Q Consensus 424 qi~~L~~~GvDlll~ETi~~~~-------------------------Eakaa~~a~~~---~~~~Pv~iS~t~~~~g~l~ 475 (698)
.++.+.+.|++++..+|++.-. .....+.-++. ..+.|+++|+.-.+
T Consensus 27 ~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~~----- 101 (300)
T TIGR01037 27 SLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVYGSS----- 101 (300)
T ss_pred HHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEeecCC-----
Confidence 3445666799999887665330 12222222221 12468888885211
Q ss_pred CCCcHHHHHHHHHHhCCCCceEEEEcCCC-------------hhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCccccc
Q psy13907 476 HGDKFGLIARDVYAKNPAQLVAVGVNCLA-------------PHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMN 540 (698)
Q Consensus 476 ~G~~l~~~v~~~~~~~~~~~~~iGlNC~~-------------p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~ 540 (698)
-+.+.++++.+.+. ....++|=+||.- |+.+..+++.++ .+.||++.=+.
T Consensus 102 -~~~~~~~a~~~~~~-~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~------------- 166 (300)
T TIGR01037 102 -VEEFAEVAEKLEKA-PPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP------------- 166 (300)
T ss_pred -HHHHHHHHHHHHhc-cCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC-------------
Confidence 12334555555321 1236788888842 345566677666 46888877542
Q ss_pred CCChhhHHHHHHHHHHcCCeEE
Q psy13907 541 KDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 541 ~~~p~~~a~~~~~~~~~G~~ii 562 (698)
+.+++.+.++.+.+.|+..|
T Consensus 167 --~~~~~~~~a~~l~~~G~d~i 186 (300)
T TIGR01037 167 --NVTDITEIAKAAEEAGADGL 186 (300)
T ss_pred --ChhhHHHHHHHHHHcCCCEE
Confidence 11245555666667775444
No 72
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=79.28 E-value=36 Score=37.83 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHHHhcchhh
Q psy13907 313 NRQAVIDTHRDYVRAGCDIVT 333 (698)
Q Consensus 313 ~Pe~V~~iH~~yl~AGAdII~ 333 (698)
+|+...++-++++++|+|.|.
T Consensus 144 d~~~la~~~~~l~~gGvD~Ik 164 (367)
T cd08205 144 SPEELAELAYELALGGIDLIK 164 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeee
Confidence 567778888999999999984
No 73
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=78.92 E-value=19 Score=38.26 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEec------CCCccCCCCcHH---HHHHHHHHhC
Q psy13907 421 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCK------DEKHTCHGDKFG---LIARDVYAKN 491 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~------~~g~l~~G~~l~---~~v~~~~~~~ 491 (698)
.+.-++.+.++|+|.+-+|-- .|....++++.+ .++||+--+-++ ..|...-|++-. ++++......
T Consensus 96 v~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~ 171 (264)
T PRK00311 96 LRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALE 171 (264)
T ss_pred HHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHH
Confidence 334455556699999999985 355555666665 478987222221 123333566543 5555444333
Q ss_pred CCCceEEEEcCCChhhhHHHHHHhcCCCCEE
Q psy13907 492 PAQLVAVGVNCLAPHYVESLLTSAGRDVPLL 522 (698)
Q Consensus 492 ~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~ 522 (698)
.++.++|=+-|...+.++.+-+.+ +.|++
T Consensus 172 eAGA~~i~lE~v~~~~~~~i~~~l--~iP~i 200 (264)
T PRK00311 172 EAGAFALVLECVPAELAKEITEAL--SIPTI 200 (264)
T ss_pred HCCCCEEEEcCCCHHHHHHHHHhC--CCCEE
Confidence 478899999998666666666666 45654
No 74
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=78.78 E-value=26 Score=38.09 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=60.0
Q ss_pred CCCCEEEecccCCHHHHHH---HHHHHH-hcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-CC-
Q psy13907 431 GGIDLLAIETLPAQEEAMV---LAELIK-EYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-LA- 504 (698)
Q Consensus 431 ~GvDlll~ETi~~~~Eaka---a~~a~~-~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC-~~- 504 (698)
.|+|+..-|.++.-..... ...... .....|+.+++. . .+.+.+.++++.+.+ .+.+.|-+|| |.
T Consensus 32 ~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~--g----~~~~~~~~aa~~~~~---~g~d~IdlN~gCP~ 102 (321)
T PRK10415 32 MGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA--G----SDPKEMADAARINVE---SGAQIIDINMGCPA 102 (321)
T ss_pred HCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe--C----CCHHHHHHHHHHHHH---CCCCEEEEeCCCCH
Confidence 5789988898876432111 111111 111246555542 1 233444455554432 5678899999 54
Q ss_pred ---------------hhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeE
Q psy13907 505 ---------------PHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKY 561 (698)
Q Consensus 505 ---------------p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~i 561 (698)
|+.+..+++.+. .+.|+++.-+.|.. .+...+.+.++.+.+.|+..
T Consensus 103 ~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~-----------~~~~~~~~~a~~le~~G~d~ 165 (321)
T PRK10415 103 KKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA-----------PEHRNCVEIAQLAEDCGIQA 165 (321)
T ss_pred HHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc-----------CCcchHHHHHHHHHHhCCCE
Confidence 455666666664 57899888876521 12224555555566667443
No 75
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=78.68 E-value=1e+02 Score=33.41 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccCCCCeEEEE--ecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy13907 19 QLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAG--SLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGID 96 (698)
Q Consensus 19 eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAG--SIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD 96 (698)
-++.+|++..|++.. +..|.. ++-||...=++|=-+.+. .+..++-.+.+..|+-...++|+|
T Consensus 101 givqravr~ik~~~p------------~l~iitDvcLceyT~HGHcGil~~~~---~V~ND~Tle~l~k~Avs~AeAGAd 165 (330)
T COG0113 101 GIVQRAVRAIKEAFP------------ELVVITDVCLCEYTDHGHCGILDDGG---YVDNDETLEILAKQAVSQAEAGAD 165 (330)
T ss_pred ChHHHHHHHHHHhCC------------CeEEEeeecccCCcCCCccccccCCC---eecchHHHHHHHHHHHHHHHcCCC
Confidence 477777777766542 344444 345665544444222222 255677788888899889999999
Q ss_pred EEEEecCcCHHHHHHHHHHHHhc--CCCeEEEEEE
Q psy13907 97 LLAIETLPAQEEAMVLAELIKEY--PGLKAWISFS 129 (698)
Q Consensus 97 ~il~ETi~~l~Ea~aa~~a~~~~--~~~Pv~iSft 129 (698)
++.==-|-|- -+.++.+++.+. .+.|++ |.+
T Consensus 166 ivAPSdMMDG-rV~aIR~aLd~ag~~~v~IM-sYs 198 (330)
T COG0113 166 IVAPSDMMDG-RVGAIREALDEAGFIDVPIM-SYS 198 (330)
T ss_pred eecccccccc-hHHHHHHHHHHcCCCcceee-ehh
Confidence 9986555554 356677777653 466765 444
No 76
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=78.61 E-value=93 Score=33.81 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEE--EecC
Q psy13907 315 QAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVA--GSLG 392 (698)
Q Consensus 315 e~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VA--GsiG 392 (698)
+.+.+.-++-++.|-.-|.. |.... .++..|-....-..+...|++..|+... ...|. -++-
T Consensus 61 d~l~~~~~~~~~~Gi~~v~l--Fgv~~--~Kd~~gs~A~~~~g~v~~air~iK~~~p------------dl~vi~DVcLc 124 (322)
T PRK13384 61 SALADEIERLYALGIRYVMP--FGISH--HKDAKGSDTWDDNGLLARMVRTIKAAVP------------EMMVIPDICFC 124 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEE--eCCCC--CCCCCcccccCCCChHHHHHHHHHHHCC------------CeEEEeeeecc
Confidence 44555667778888765443 22211 1222222111123466777777666542 23333 3567
Q ss_pred CcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh--cCCCeEEEEEEec-
Q psy13907 393 SYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE--YPGLKAWISFSCK- 469 (698)
Q Consensus 393 P~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~--~~~~Pv~iS~t~~- 469 (698)
||...=+.|.-.. +.++-|+-.+...+|+-.+.++|+|++.-=.|-|- ..+++.+++.+ +.+.|+| |-+.+
T Consensus 125 ~YT~hGHcGil~~----g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaKy 198 (322)
T PRK13384 125 EYTDHGHCGVLHN----DEVDNDATVENLVKQSVTAAKAGADMLAPSAMMDG-QVKAIRQGLDAAGFEHVAIL-AHSAKF 198 (322)
T ss_pred cCCCCCceeeccC----CcCccHHHHHHHHHHHHHHHHcCCCeEeccccccc-HHHHHHHHHHHCCCCCCcee-ehhHhh
Confidence 7764334443222 24788999999999999999999999998777776 45777888875 3456654 54432
Q ss_pred ---------C--------CCc--cCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc--CCCCEEEecCCC
Q psy13907 470 ---------D--------EKH--TCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG--RDVPLLCCPNSG 528 (698)
Q Consensus 470 ---------~--------~g~--l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~--~~~pl~~yPNaG 528 (698)
+ +.+ -++-..-.+++.........+.+.+.|-=..| .+.+++.++ .+.|+.+|=-+|
T Consensus 199 aS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~lPvaaYqVSG 276 (322)
T PRK13384 199 ASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTP--YLDVLSRLRQETHLPLAAYQVGG 276 (322)
T ss_pred hhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCch--HHHHHHHHHhccCCCEEEEEchH
Confidence 0 000 12222233444444322234566676655333 344555554 689999999998
Q ss_pred CCc----CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 529 ETF----DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 529 ~~~----d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
+-- -...| |. + ....+.+.+..+..+|+.+|
T Consensus 277 EYaMikaAa~~G-~~-d-~~~~~~Esl~~~kRAGAd~I 311 (322)
T PRK13384 277 EYAMIKFAALAG-AL-D-ERAVVTETLGGLKRAGADLI 311 (322)
T ss_pred HHHHHHHHHHcC-Cc-c-HHHHHHHHHHHHHHcCCCEE
Confidence 521 11234 62 1 12356777788889998876
No 77
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=78.41 E-value=73 Score=33.79 Aligned_cols=144 Identities=10% Similarity=0.068 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEE-ecccC-------CHHHHH-HHHHHHHhc------CCCeEEEEEEecCCCccCCCC
Q psy13907 414 PQELIDYHRPRIEALIQGGIDLLA-IETLP-------AQEEAM-VLAELIKEY------PGLKAWISFSCKDEKHTCHGD 478 (698)
Q Consensus 414 ~del~~~y~~qi~~L~~~GvDlll-~ETi~-------~~~Eak-aa~~a~~~~------~~~Pv~iS~t~~~~g~l~~G~ 478 (698)
.+.+.+...+.++.+.++|+|.|. .|... +..+.+ -+...+++. .+.|+++ ++|-+
T Consensus 139 l~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~l-H~cg~-------- 209 (306)
T cd00465 139 IEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVH-HSCYD-------- 209 (306)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEE-EECCC--------
Confidence 366667788999999999999664 44322 222222 233333321 2345443 33322
Q ss_pred cHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcC
Q psy13907 479 KFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTG 558 (698)
Q Consensus 479 ~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G 558 (698)
+ .+..+.+.+ .+++.+++-... ..+..+.+.++.+ ..+..|--... . ..++++..+.+++.++.+
T Consensus 210 ~-~~~~~~l~~---~~~d~~~~d~~~-~d~~~~~~~~~~~--~~i~Ggv~~~~--~------~~~~e~i~~~v~~~l~~~ 274 (306)
T cd00465 210 A-ADLLEEMIQ---LGVDVISFDMTV-NEPKEAIEKVGEK--KTLVGGVDPGY--L------PATDEECIAKVEELVERL 274 (306)
T ss_pred H-HHHHHHHHH---hCcceEeccccc-CCHHHHHHHhCCC--EEEECCCCccc--c------CCCHHHHHHHHHHHHHHh
Confidence 1 234555543 234555554432 3455566655522 33333331110 1 245688999999888754
Q ss_pred C--eEEeecCCC----ch--HHHHHHHhccc
Q psy13907 559 V--KYVGGCCRT----NA--DDMKNVNQVPV 581 (698)
Q Consensus 559 ~--~iiGGCCGT----tP--~hI~al~~~v~ 581 (698)
. -|++--||. .+ +.|++|.++++
T Consensus 275 ~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 275 GPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred CCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 3 577766764 34 89999988775
No 78
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=78.09 E-value=33 Score=37.49 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceE
Q psy13907 418 IDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 497 (698)
Q Consensus 418 ~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~ 497 (698)
.+.--.|++.|.++|+|++=+ |+|+...+++.-...+ ....|++.-+-|+- ..++.++. .+++.
T Consensus 33 v~atv~QI~~L~~aGceiVRv-avp~~~~A~al~~I~~-~~~iPlVADIHFd~----------~lAl~a~~----~g~dk 96 (346)
T TIGR00612 33 IDSTVAQIRALEEAGCDIVRV-TVPDRESAAAFEAIKE-GTNVPLVADIHFDY----------RLAALAMA----KGVAK 96 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHh-CCCCCEEEeeCCCc----------HHHHHHHH----hccCe
Confidence 355678999999999999987 8999988776555444 46799987776642 23444442 45567
Q ss_pred EEEcC---CChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH----HcC-CeEEeecCCC
Q psy13907 498 VGVNC---LAPHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL----DTG-VKYVGGCCRT 568 (698)
Q Consensus 498 iGlNC---~~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~----~~G-~~iiGGCCGT 568 (698)
|=+|= .+.+.++++++... ..+|+=+=-|+|.........| ...+|+.|.+.+.+++ +.| -+|+=-|=.+
T Consensus 97 iRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ky-g~~t~eamveSAl~~v~~le~~~F~diviS~KsS 175 (346)
T TIGR00612 97 VRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKY-GDATAEAMVQSALEEAAILEKLGFRNVVLSMKAS 175 (346)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHc-CCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC
Confidence 77877 35678888888887 7889888889994321111112 1247888888777665 346 5565555555
Q ss_pred c-hHHHHHHHhcccc
Q psy13907 569 N-ADDMKNVNQVPVK 582 (698)
Q Consensus 569 t-P~hI~al~~~v~~ 582 (698)
. |.-|++-+...+.
T Consensus 176 dv~~~i~ayr~la~~ 190 (346)
T TIGR00612 176 DVAETVAAYRLLAER 190 (346)
T ss_pred CHHHHHHHHHHHHhh
Confidence 4 4556665555443
No 79
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=78.01 E-value=40 Score=36.06 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=44.7
Q ss_pred CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCC-ceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHH
Q psy13907 121 GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ-LVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQ 199 (698)
Q Consensus 121 ~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~-~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~ 199 (698)
+.|+++|+. |.+.++..+.+......+ +|+|=+||+.|..-. .-..+..-|+.
T Consensus 91 ~~p~i~si~---------g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~-----------------gg~~~~~~~~~ 144 (301)
T PRK07259 91 DTPIIANVA---------GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKH-----------------GGMAFGTDPEL 144 (301)
T ss_pred CCcEEEEec---------cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCC-----------------CccccccCHHH
Confidence 689999884 334444444332223456 899999998764200 00012335788
Q ss_pred HHHHHHHHHHcCCCCCCCcCCCcCccEEeecC
Q psy13907 200 LLSIELELAAAGKMPSGTTQIPFEAPLKAKPN 231 (698)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pn 231 (698)
+.++++.+++. . +.||+++=+
T Consensus 145 ~~eiv~~vr~~------~-----~~pv~vKl~ 165 (301)
T PRK07259 145 AYEVVKAVKEV------V-----KVPVIVKLT 165 (301)
T ss_pred HHHHHHHHHHh------c-----CCCEEEEcC
Confidence 88999988876 3 566666543
No 80
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=77.91 E-value=1e+02 Score=33.54 Aligned_cols=220 Identities=16% Similarity=0.174 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEE--ecCC
Q psy13907 316 AVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAG--SLGS 393 (698)
Q Consensus 316 ~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAG--siGP 393 (698)
.+.+.-++-++.|-.-|..+ .. + ..++..|-....-..+...|++..|++.. ...|.. ++-|
T Consensus 60 ~l~~~v~~~~~~Gi~av~LF--gv-~-~~Kd~~gs~A~~~~g~v~rair~iK~~~p------------~l~vi~DVcLc~ 123 (323)
T PRK09283 60 LLVKEAEEAVELGIPAVALF--GV-P-ELKDEDGSEAYNPDGLVQRAIRAIKKAFP------------ELGVITDVCLDE 123 (323)
T ss_pred HHHHHHHHHHHCCCCEEEEe--Cc-C-CCCCcccccccCCCCHHHHHHHHHHHhCC------------CcEEEEeeeccC
Confidence 34445566778887644432 22 1 11222222111112466777777666532 233433 5667
Q ss_pred cCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh--cCCCeEEEEEEec--
Q psy13907 394 YGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE--YPGLKAWISFSCK-- 469 (698)
Q Consensus 394 ~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~--~~~~Pv~iS~t~~-- 469 (698)
|...=+.|.-.. +.++-|+-.+...+|+-.+.++|+|++.-=-|-|- ..+++..++.+ +.+.|+| |-+.+
T Consensus 124 YT~hGHcGil~~----g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDG-rV~aIR~aLd~~g~~~v~Im-SYsaKya 197 (323)
T PRK09283 124 YTSHGHCGILED----GYVDNDETLELLAKQALSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFTDVPIM-SYSAKYA 197 (323)
T ss_pred CCCCCceecccC----CcCcCHHHHHHHHHHHHHHHHhCCCEEEccccccc-HHHHHHHHHHHCCCCCCcee-ecHHHHH
Confidence 764434443222 35788999999999999999999999998777766 45677777775 3456655 54432
Q ss_pred --------C---------CC--ccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc--CCCCEEEecCCC
Q psy13907 470 --------D---------EK--HTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG--RDVPLLCCPNSG 528 (698)
Q Consensus 470 --------~---------~g--~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~--~~~pl~~yPNaG 528 (698)
+ +. .-++-..-.+++..+.....-+.+-+.|-=..| .+.+++.++ .+.|+.+|=-+|
T Consensus 198 S~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~~PvaaYqVSG 275 (323)
T PRK09283 198 SAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALP--YLDIIRRVKDEFNLPVAAYQVSG 275 (323)
T ss_pred HhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHhcCCCCEEEEEccH
Confidence 0 00 112333333555444322234566666655433 445555554 679999999998
Q ss_pred CCc----CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 529 ETF----DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 529 ~~~----d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
+-- -...| |. | ....+-+....+..+|+.+|
T Consensus 276 EYaMikaAa~~G-~~-D-~~~~~~Esl~~~kRAGAd~I 310 (323)
T PRK09283 276 EYAMIKAAAQNG-WI-D-EERVVLESLLSIKRAGADGI 310 (323)
T ss_pred HHHHHHHHHHcC-CC-C-HHHHHHHHHHHHHhcCCCEE
Confidence 521 11234 62 1 12346777778888998876
No 81
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=77.58 E-value=28 Score=37.15 Aligned_cols=140 Identities=11% Similarity=0.008 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~E-T-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.++++. ++..++.+++.|||-|++- | .-+..|-+.+++.+.+. .++||+++... +..+
T Consensus 17 ~iD~~~----l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~----------~t~~ 82 (289)
T cd00951 17 SFDEDA----YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY----------GTAT 82 (289)
T ss_pred CcCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC----------CHHH
Confidence 466654 5677788888999998654 2 34566767777665542 35899887632 2455
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL 555 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~ 555 (698)
+++........+.+++.+=- .+.+.+..+.+.+. .+.|+++|=+.|. +.+++.+.+ +.
T Consensus 83 ~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~-----------~l~~~~l~~----L~ 147 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANA-----------VLTADSLAR----LA 147 (289)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCC-----------CCCHHHHHH----HH
Confidence 66555432234556655543 13456777777775 7899999954331 234554443 33
Q ss_pred HcCCeEEe--ecCCCchHHHHHHHhcc
Q psy13907 556 DTGVKYVG--GCCRTNADDMKNVNQVP 580 (698)
Q Consensus 556 ~~G~~iiG--GCCGTtP~hI~al~~~v 580 (698)
+.--||+| =+|| ...++.++.+..
T Consensus 148 ~~~pnivgiKds~~-d~~~~~~~~~~~ 173 (289)
T cd00951 148 ERCPNLVGFKDGVG-DIELMRRIVAKL 173 (289)
T ss_pred hcCCCEEEEEeCCC-CHHHHHHHHHhc
Confidence 32234554 2344 567777776544
No 82
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=77.51 E-value=44 Score=35.43 Aligned_cols=125 Identities=10% Similarity=0.126 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEE
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 498 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~i 498 (698)
+...+.+++|.++|||+|=+ +.|+ .| =+.||..+.++-....+
T Consensus 29 ~~~~~~~~~l~~~Gad~iEl--------------------GiPf------SD--P~aDGpvIq~a~~rAL~--------- 71 (263)
T CHL00200 29 VITKKALKILDKKGADIIEL--------------------GIPY------SD--PLADGPIIQEASNRALK--------- 71 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEE--------------------CCCC------CC--CCccCHHHHHHHHHHHH---------
Confidence 44667788899999999832 4453 12 24688888766554432
Q ss_pred EEcCCChhhhHHHHHHhc--CCCC--EEEecCC----CCCc-------CCCCcccccCCChhhHHHHHHHHHHcCCeEEe
Q psy13907 499 GVNCLAPHYVESLLTSAG--RDVP--LLCCPNS----GETF-------DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVG 563 (698)
Q Consensus 499 GlNC~~p~~~~~~l~~l~--~~~p--l~~yPNa----G~~~-------d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiG 563 (698)
|++..+.+...+++++ .+.| ++.|-|- |... -..+|-..+|..+++..++...+.+.|+..|=
T Consensus 72 --~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 72 --QGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELIL 149 (263)
T ss_pred --cCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4455677777777776 4556 5567774 3211 11244345678888888888888899977777
Q ss_pred ecCCCc-hHHHHHHHhcccc
Q psy13907 564 GCCRTN-ADDMKNVNQVPVK 582 (698)
Q Consensus 564 GCCGTt-P~hI~al~~~v~~ 582 (698)
-+.=|| ++.|+.|++..++
T Consensus 150 lv~PtT~~eri~~i~~~a~g 169 (263)
T CHL00200 150 LIAPTSSKSRIQKIARAAPG 169 (263)
T ss_pred EECCCCCHHHHHHHHHhCCC
Confidence 777776 4789888888763
No 83
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=77.11 E-value=18 Score=39.30 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEec-----------------CCCccCCCCcHH
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCK-----------------DEKHTCHGDKFG 481 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~-----------------~~g~l~~G~~l~ 481 (698)
+.--.|++.|.++|+|++-+ |+++...|.|.-+--++ .++|++.-+-+. +.|..-+++-+.
T Consensus 36 ~aTv~QI~~L~~aG~dIVRv-tv~~~e~A~A~~~Ik~~-~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~ 113 (361)
T COG0821 36 EATVAQIKALERAGCDIVRV-TVPDMEAAEALKEIKQR-LNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVR 113 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHh-CCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHH
Confidence 45668999999999999987 99999777666555555 589999888774 123344556677
Q ss_pred HHHHHHHHhCCCCceEEEEcCCC
Q psy13907 482 LIARDVYAKNPAQLVAVGVNCLA 504 (698)
Q Consensus 482 ~~v~~~~~~~~~~~~~iGlNC~~ 504 (698)
+.++...+ ..-|.=||+|-.+
T Consensus 114 ~vVe~Ak~--~g~piRIGVN~GS 134 (361)
T COG0821 114 EVVEAAKD--KGIPIRIGVNAGS 134 (361)
T ss_pred HHHHHHHH--cCCCEEEecccCc
Confidence 88887754 3567789999944
No 84
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=76.88 E-value=86 Score=33.87 Aligned_cols=222 Identities=16% Similarity=0.204 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEE--EecCCc
Q psy13907 317 VIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVA--GSLGSY 394 (698)
Q Consensus 317 V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VA--GsiGP~ 394 (698)
+.+--++-++.|-..|. .|..-..+.++..|-....-..+..+|++..|+... ...|. -++-||
T Consensus 63 l~~~~~~~~~lGi~av~--LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p------------~l~iitDvcLcey 128 (330)
T COG0113 63 LVEEAEELVDLGIPAVI--LFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFP------------ELVVITDVCLCEY 128 (330)
T ss_pred HHHHHHHHHhcCCCEEE--EeCCCcccccCcccccccCCCChHHHHHHHHHHhCC------------CeEEEeeecccCC
Confidence 33344566777766554 354443333433332111112366777766665542 22222 356777
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh--cCCCeEEEEEEec---
Q psy13907 395 GAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE--YPGLKAWISFSCK--- 469 (698)
Q Consensus 395 ~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~--~~~~Pv~iS~t~~--- 469 (698)
...=+.|.-+.+. .+.-|+-.+.+.+|+-...++|+|++.-=-|-|- ..+++.+++.+ +.+.|+| |-+.+
T Consensus 129 T~HGHcGil~~~~---~V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDG-rV~aIR~aLd~ag~~~v~IM-sYsaKyAS 203 (330)
T COG0113 129 TDHGHCGILDDGG---YVDNDETLEILAKQAVSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFIDVPIM-SYSAKYAS 203 (330)
T ss_pred cCCCccccccCCC---eecchHHHHHHHHHHHHHHHcCCCeecccccccc-hHHHHHHHHHHcCCCcceee-ehhHHHhh
Confidence 6444444433331 3678999999999999999999999998777776 45677777775 3456765 44321
Q ss_pred -------C---------CCc--cCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc--CCCCEEEecCCCC
Q psy13907 470 -------D---------EKH--TCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG--RDVPLLCCPNSGE 529 (698)
Q Consensus 470 -------~---------~g~--l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~--~~~pl~~yPNaG~ 529 (698)
+ +.+ -+|-..-.+++..+.-...-+.+.+.+-=..| .+.+++.++ .+.|+.+|--+|+
T Consensus 204 afYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~--YLDIi~~vk~~~~lP~~AYqVSGE 281 (330)
T COG0113 204 AFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALP--YLDIIRRVKEEFNLPVAAYQVSGE 281 (330)
T ss_pred hccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCch--HHHHHHHHHHhcCCCeEEEecchH
Confidence 0 001 12333333454444222234556666654333 344445544 6799999999995
Q ss_pred Cc----CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 530 TF----DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 530 ~~----d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
-- -...| |. ++ ...+.+..-.+..+|+++|
T Consensus 282 YaMikAAa~nG-wi-de-~~~vlEsL~~~kRAGAd~I 315 (330)
T COG0113 282 YAMIKAAAQNG-WI-DE-EKVVLESLTSIKRAGADLI 315 (330)
T ss_pred HHHHHHHHHcC-Cc-ch-HHHHHHHHHHHHhcCCCEE
Confidence 21 11244 73 11 2245666666777887765
No 85
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=76.80 E-value=39 Score=35.87 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=60.3
Q ss_pred eEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEE
Q psy13907 47 VRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI 126 (698)
Q Consensus 47 v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~i 126 (698)
.+|.+++ |||.+ . .+.++ ..+.-++.+.++|||.+-+|-- .|....++++.+ .++||+-
T Consensus 77 p~vvaD~-pfg~y-----------~--~~~~~---av~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~-agIpV~g 135 (264)
T PRK00311 77 ALVVADM-PFGSY-----------Q--ASPEQ---ALRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVE-RGIPVMG 135 (264)
T ss_pred CcEEEeC-CCCCc-----------c--CCHHH---HHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHH-CCCCEee
Confidence 4677888 77642 1 22333 2233344444589999999964 466666777776 6899974
Q ss_pred EEEEcCC------CccCCCCC---HHHHHHHHHhhCCCCceEEEEcCCC
Q psy13907 127 SFSCKDE------KHTCHGDK---FGLIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 127 Sft~~~~------g~l~~G~~---~~~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
.+-+.+. |...-|.+ ..++++..+.....|+++|=+-|..
T Consensus 136 HiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~ 184 (264)
T PRK00311 136 HLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVP 184 (264)
T ss_pred eecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 4433222 33334444 3455555443345799999999986
No 86
>PRK15452 putative protease; Provisional
Probab=76.75 E-value=82 Score=35.99 Aligned_cols=133 Identities=12% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHHHHhCCCCEEEec----------ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCC
Q psy13907 423 PRIEALIQGGIDLLAIE----------TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNP 492 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~E----------Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~ 492 (698)
+++++.+++|+|.+.+. .-++..+.+.++..+++ .+..+++.+.. +.....+....+.+.....
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~-~g~kvyvt~n~-----i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA-LGKKFYVVVNI-----APHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH-cCCEEEEEecC-----cCCHHHHHHHHHHHHHHHh
Confidence 77888899999999983 35677889999998887 47888887642 2222334444443332223
Q ss_pred CCceEEEEcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCchHH
Q psy13907 493 AQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNADD 572 (698)
Q Consensus 493 ~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~h 572 (698)
.++++|-+.-.+ +..++++...+.++.+-.+....+ ...++-|.+.|+.-+==-.--|-+.
T Consensus 88 ~gvDgvIV~d~G---~l~~~ke~~p~l~ih~stqlni~N----------------~~a~~f~~~lG~~rvvLSrELsl~E 148 (443)
T PRK15452 88 MKPDALIMSDPG---LIMMVREHFPEMPIHLSVQANAVN----------------WATVKFWQQMGLTRVILSRELSLEE 148 (443)
T ss_pred CCCCEEEEcCHH---HHHHHHHhCCCCeEEEEecccCCC----------------HHHHHHHHHCCCcEEEECCcCCHHH
Confidence 567777776543 233444433344443333221111 1223446677754333345667778
Q ss_pred HHHHHhcc
Q psy13907 573 MKNVNQVP 580 (698)
Q Consensus 573 I~al~~~v 580 (698)
|+.|++..
T Consensus 149 I~~i~~~~ 156 (443)
T PRK15452 149 IEEIRQQC 156 (443)
T ss_pred HHHHHhhC
Confidence 88776543
No 87
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=76.21 E-value=63 Score=34.03 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=33.4
Q ss_pred CCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe---c------CcCHHH---HHHHHHHHHhcCCCeE
Q psy13907 62 DGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---T------LPAQEE---AMVLAELIKEYPGLKA 124 (698)
Q Consensus 62 ~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~E---T------i~~l~E---a~aa~~a~~~~~~~Pv 124 (698)
|.|=|.|.. ..+.+++.+ +++.+.+.|+|+|=+= | ++.-+| ++.+++.+++..++|+
T Consensus 10 pdSF~dg~~--~~~~~~~~~----~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pl 78 (257)
T TIGR01496 10 PDSFSDGGR--FLSVDKAVA----HAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPI 78 (257)
T ss_pred CCCCCCCCC--CCCHHHHHH----HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE
Confidence 444455532 245555543 5666677999999883 2 122335 7777777776446664
No 88
>PLN02417 dihydrodipicolinate synthase
Probab=76.09 E-value=41 Score=35.80 Aligned_cols=173 Identities=12% Similarity=0.001 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ecC-----cCHHHHHHHHHHHHhc--CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 81 DYHRPRIEALIQGGIDLLAI-ETL-----PAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~-ETi-----~~l~Ea~aa~~a~~~~--~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
+.++..++.+++.|||.|++ -|. -+.+|-+.+++.+.+. ..+|+++... ..+..++++..+..
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~~i~~a~~a 92 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG---------SNSTREAIHATEQG 92 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC---------CccHHHHHHHHHHH
Confidence 35667888888899999876 232 2677877777766553 3478887662 33566777655433
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCC
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNR 232 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pna 232 (698)
...|+|+|.+ ..|.+ ....++.+.++.+++.+. . ||.+|=|-
T Consensus 93 ~~~Gadav~~--~~P~y-----------------------~~~~~~~i~~~f~~va~~------------~-pi~lYn~P 134 (280)
T PLN02417 93 FAVGMHAALH--INPYY-----------------------GKTSQEGLIKHFETVLDM------------G-PTIIYNVP 134 (280)
T ss_pred HHcCCCEEEE--cCCcc-----------------------CCCCHHHHHHHHHHHHhh------------C-CEEEEECh
Confidence 4578887665 44321 112568889999988876 5 77777442
Q ss_pred ---CCce---e-----ecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEeccccccccc-c-cCCCCcCc
Q psy13907 233 ---SLFE---T-----YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSSQLSK-H-VGEDNVTE 299 (698)
Q Consensus 233 ---g~p~---~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt~l~~-~-~g~~~~~~ 299 (698)
|..- . .++..+.+.+. +.+ ..+.+. ...++.|+.|.=+..+.. . .|.+
T Consensus 135 ~~tg~~l~~~~l~~l~~~pni~giKds--------s~~------~~~~~~-~~~~~~v~~G~d~~~~~~~l~~Ga~---- 195 (280)
T PLN02417 135 GRTGQDIPPEVIFKIAQHPNFAGVKEC--------TGN------DRVKQY-TEKGILLWSGNDDECHDARWDYGAD---- 195 (280)
T ss_pred hHhCcCCCHHHHHHHhcCCCEEEEEeC--------CCc------HHHHHH-hcCCeEEEEcccHHhhHHHHhCCCC----
Confidence 3211 0 12334433332 111 122222 345778887776655544 2 1222
Q ss_pred CCCccc-chhhcccChHHHHHHHHHH
Q psy13907 300 KDNPLW-CSAFLHSNRQAVIDTHRDY 324 (698)
Q Consensus 300 ~~~~lw-s~~~~l~~Pe~V~~iH~~y 324 (698)
-| +...++ .|+.+.++++.+
T Consensus 196 ----G~is~~~n~-~P~~~~~l~~a~ 216 (280)
T PLN02417 196 ----GVISVTSNL-VPGLMHKLMFAG 216 (280)
T ss_pred ----EEEecHHHh-hHHHHHHHHHHH
Confidence 23 344455 789888888877
No 89
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=76.08 E-value=33 Score=38.07 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCCCEE-EEecCc-----CHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh
Q psy13907 82 YHRPRIEALIQGGIDLL-AIETLP-----AQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 151 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~i-l~ETi~-----~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~ 151 (698)
.|.+++..+..+|||+| --|.+. ..+| ++++.+++++. ++..+...+.+. +. ..++.+..+.
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit-------a~-~~em~~ra~~ 213 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT-------GP-PTQLLERARF 213 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC-------CC-HHHHHHHHHH
Confidence 45556667777999998 334332 3333 44555555432 444444444432 22 3455554433
Q ss_pred hCCCCceEEEEcCCChhhhHHHHHHhHhhccccc-ccc-----cccccCCChHHHH--HHHHHHHHcCCCCCCCcCCCcC
Q psy13907 152 KNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLE-LPV-----NNTLISRKPIQLL--SIELELAAAGKMPSGTTQIPFE 223 (698)
Q Consensus 152 ~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~-~p~-----~~~~~~~gP~~~~--~~~~~l~~~~~~~~~~~~~~~~ 223 (698)
....|++++.+|-..... .++..+++. .. +|+ -.|.+...|..|- .++.++.+. + +
T Consensus 214 a~~~Ga~~vMv~~~~~G~--~~~~~l~~~---~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~Rl------a-----G 277 (364)
T cd08210 214 AKEAGAGGVLIAPGLTGL--DTFRELAED---FDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRL------A-----G 277 (364)
T ss_pred HHHcCCCEEEeecccchH--HHHHHHHhc---CCCcEEEEccccccccccCCCcccHHHHHHHHHHH------h-----C
Confidence 334788999999855322 244444332 12 444 3555656665532 247777775 4 7
Q ss_pred ccEEeecCCC
Q psy13907 224 APLKAKPNRS 233 (698)
Q Consensus 224 ~~~~~~pnag 233 (698)
.|++.+||.+
T Consensus 278 ad~~~~~~~~ 287 (364)
T cd08210 278 ADAVIFPNYG 287 (364)
T ss_pred CCEEEeCCCc
Confidence 8889999964
No 90
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=75.88 E-value=43 Score=36.86 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceE
Q psy13907 418 IDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 497 (698)
Q Consensus 418 ~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~ 497 (698)
.++-..|++.|.++|+|++=+ |+||...+++.-...++ ..+|++.-+-|+- .-+++++. .+++.
T Consensus 41 v~atv~Qi~~L~~aGceiVRv-av~~~~~a~al~~I~~~-~~iPlvADIHFd~----------~lAl~a~~----~G~~~ 104 (360)
T PRK00366 41 VEATVAQIKRLARAGCEIVRV-AVPDMEAAAALPEIKKQ-LPVPLVADIHFDY----------RLALAAAE----AGADA 104 (360)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-ccCCHHHHHhHHHHHHc-CCCCEEEecCCCH----------HHHHHHHH----hCCCE
Confidence 356678999999999999987 89999887776655555 5799887776532 12444442 45677
Q ss_pred EEEcCC---C-hhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH----HcC-CeEEeecCC
Q psy13907 498 VGVNCL---A-PHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL----DTG-VKYVGGCCR 567 (698)
Q Consensus 498 iGlNC~---~-p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~----~~G-~~iiGGCCG 567 (698)
+=+|=. . .+.++++++... ..+|+=+=-|+|.........| .+.+|+.|.+.+.+++ +.| =+|+=-+=-
T Consensus 105 iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~y-g~~t~eamveSAl~~~~~le~~~f~~iviS~Ks 183 (360)
T PRK00366 105 LRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKY-GEPTPEALVESALRHAKILEELGFDDIKISVKA 183 (360)
T ss_pred EEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHc-CCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc
Confidence 788882 3 567888888777 7888888889994321111112 1347888877766654 456 555554544
Q ss_pred Cc-hHHHHHHHhccc
Q psy13907 568 TN-ADDMKNVNQVPV 581 (698)
Q Consensus 568 Tt-P~hI~al~~~v~ 581 (698)
++ |.-|++-+...+
T Consensus 184 S~v~~~i~ayrlla~ 198 (360)
T PRK00366 184 SDVQDLIAAYRLLAK 198 (360)
T ss_pred CCHHHHHHHHHHHHh
Confidence 44 455666555443
No 91
>KOG3063|consensus
Probab=75.78 E-value=0.68 Score=47.41 Aligned_cols=67 Identities=24% Similarity=0.423 Sum_probs=58.9
Q ss_pred CCchhhhhhhhhcccccccccchhhhhhhhhhhhccccccCCCCcchhhhccccccccccc--ccccee
Q psy13907 630 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTLI--TSNFKI 696 (698)
Q Consensus 630 v~~~s~~~~Lir~e~~~~~~~~~~~~~~iq~~qi~~g~~~~~~~~p~~~~~p~~~~~~~~~--~~~~~~ 696 (698)
+.++--++++||-|+.+..-....|..-|..-||-||+-.||=.|||.|.+--+---||+. .+-|||
T Consensus 201 ikIk~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGapvrGEsIPiRlFLagYdlTPtmrdinkkFsV 269 (301)
T KOG3063|consen 201 IKIKHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTMRDINKKFSV 269 (301)
T ss_pred EEeeeeEEEEEEeecccCCCcceeccceeeeEEeccCCCcCCCeeeeEEEecccCCCcchhhhcceeee
Confidence 3567788999999999999988888888999999999999999999999888887788887 666776
No 92
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=75.64 E-value=19 Score=38.67 Aligned_cols=76 Identities=18% Similarity=0.089 Sum_probs=44.5
Q ss_pred CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHH
Q psy13907 121 GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQL 200 (698)
Q Consensus 121 ~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~ 200 (698)
+.|+++|+... .+.++.++.+......++++|-+||+.|..+ . .+..+. .+-.-|+.+
T Consensus 99 ~~p~i~si~G~--------~~~~~~~~~a~~~~~~gad~ielN~sCP~~~--~---~~~~G~---------~l~~~~~~~ 156 (299)
T cd02940 99 DKILIASIMCE--------YNKEDWTELAKLVEEAGADALELNFSCPHGM--P---ERGMGA---------AVGQDPELV 156 (299)
T ss_pred CCeEEEEecCC--------CCHHHHHHHHHHHHhcCCCEEEEECCCCCCC--C---CCCCch---------hhccCHHHH
Confidence 58999998533 1334433333222235799999999986541 0 000000 112358889
Q ss_pred HHHHHHHHHcCCCCCCCcCCCcCccEEee
Q psy13907 201 LSIELELAAAGKMPSGTTQIPFEAPLKAK 229 (698)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (698)
.++++.+.+. + +.||+++
T Consensus 157 ~~iv~~v~~~------~-----~~Pv~vK 174 (299)
T cd02940 157 EEICRWVREA------V-----KIPVIAK 174 (299)
T ss_pred HHHHHHHHHh------c-----CCCeEEE
Confidence 9999988775 3 5677666
No 93
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=74.96 E-value=55 Score=35.29 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEe-cc-----cCCHHHHHHHHHHHHhcC--CCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEYP--GLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~-ET-----i~~~~Eakaa~~a~~~~~--~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.+++ +.+++.++.|++.|||-|++ -| .-+..|=+.+++.+.+.. ++||++.. .+.+..+
T Consensus 21 ~vD~----~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~e 87 (299)
T COG0329 21 SVDE----EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAE 87 (299)
T ss_pred CcCH----HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHH
Confidence 3666 55778888899999997654 22 345677777777777543 47876554 2344666
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--CCCCEEEecCCC
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--RDVPLLCCPNSG 528 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~~~pl~~yPNaG 528 (698)
+++........+++++.+=. ...+.+..+.+.+. .+.|+++|=+-+
T Consensus 88 ai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 88 AIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 76665433335666666544 24456777777775 799999997654
No 94
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=74.81 E-value=31 Score=36.68 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhCCCCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHh
Q psy13907 419 DYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 490 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~E-T-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~ 490 (698)
+.+++.++.+++.|+|-|++= | .-+..|-+..++.+.+. .+.||++... +.+..++++.....
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~i~~a~~a 92 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEAIELARHA 92 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHHHHHHHHH
Confidence 556778888899999998873 2 23466767777766542 4579988764 33577777766543
Q ss_pred CCCCceEEEEcC-----CChhhhHHHHHHhc--CCCCEEEecCC
Q psy13907 491 NPAQLVAVGVNC-----LAPHYVESLLTSAG--RDVPLLCCPNS 527 (698)
Q Consensus 491 ~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~~~pl~~yPNa 527 (698)
...+++++.+-- ...+.+..+.+.+. .+.|+++|-+-
T Consensus 93 ~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 93 QDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred hhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 335566665443 24567788888776 88999999774
No 95
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=74.72 E-value=1.3e+02 Score=35.89 Aligned_cols=101 Identities=11% Similarity=0.175 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHH---HHHHHHHHh
Q psy13907 415 QELIDYHRPRIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG---LIARDVYAK 490 (698)
Q Consensus 415 del~~~y~~qi~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~---~~v~~~~~~ 490 (698)
|++++.|-+ ...+.|+|++ +|-...++.+++.+++++++. +.-+..+++...+ .--++. +.++.+.+
T Consensus 95 d~vv~~~v~---~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~-G~~~~~~i~yt~s----p~~t~e~~~~~ak~l~~- 165 (596)
T PRK14042 95 DDVVRAFVK---LAVNNGVDVFRVFDALNDARNLKVAIDAIKSH-KKHAQGAICYTTS----PVHTLDNFLELGKKLAE- 165 (596)
T ss_pred hHHHHHHHH---HHHHcCCCEEEEcccCcchHHHHHHHHHHHHc-CCEEEEEEEecCC----CCCCHHHHHHHHHHHHH-
Confidence 455555544 3577899998 677889999999999999984 5555555443331 233454 44444433
Q ss_pred CCCCceEEEEcC----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 491 NPAQLVAVGVNC----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 491 ~~~~~~~iGlNC----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
.++..|.+-= ..|..+..+++.+. .+.||.+|-.
T Consensus 166 --~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~H 205 (596)
T PRK14042 166 --MGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSH 205 (596)
T ss_pred --cCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 4555665543 46899999999887 4577776644
No 96
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=74.69 E-value=1.3e+02 Score=32.62 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE
Q psy13907 358 LIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLA 437 (698)
Q Consensus 358 ln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll 437 (698)
+..+|++..|+...+ --++.=-++-||...=+.|.-..+ +.++-|+-.+...+|+-.+.++|+|++.
T Consensus 93 ~v~~air~iK~~~pd----------l~vi~Dvclc~YT~hGHcGil~~~---g~vdND~Tl~~L~k~Avs~A~AGADiVA 159 (320)
T cd04824 93 PVIQAIKLIREEFPE----------LLIACDVCLCEYTSHGHCGILYED---GTINNEASVKRLAEVALAYAKAGAHIVA 159 (320)
T ss_pred hHHHHHHHHHHhCCC----------cEEEEeeeccCCCCCCcceeECCC---CcCcCHHHHHHHHHHHHHHHHhCCCEEe
Confidence 666777766655321 112223356677643333322111 3478899999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHHHh--c-CCCeEEEEEEec----------C---------CCc--cCCCCcHHHHHHHHHHhCCC
Q psy13907 438 IETLPAQEEAMVLAELIKE--Y-PGLKAWISFSCK----------D---------EKH--TCHGDKFGLIARDVYAKNPA 493 (698)
Q Consensus 438 ~ETi~~~~Eakaa~~a~~~--~-~~~Pv~iS~t~~----------~---------~g~--l~~G~~l~~~v~~~~~~~~~ 493 (698)
-=.|-|- ...++.+++.+ + .+.|+| |-+.+ + +.+ -++-..-.+++..+......
T Consensus 160 PSdMMDG-rV~aIR~aLD~~G~~~~v~Im-SYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~E 237 (320)
T cd04824 160 PSDMMDG-RVRAIKQALIQAGLGNKVSVM-SYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSE 237 (320)
T ss_pred ccccccc-HHHHHHHHHHHCCCccCCeee-ehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHh
Confidence 8777776 45677788875 3 456765 65432 0 011 12333333455544322234
Q ss_pred CceEEEEcCCChhhhHHHHHHhc--C-CCCEEEecCCCCCc----CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 494 QLVAVGVNCLAPHYVESLLTSAG--R-DVPLLCCPNSGETF----DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 494 ~~~~iGlNC~~p~~~~~~l~~l~--~-~~pl~~yPNaG~~~----d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
+.+.+.|-=..| .+.+++.++ . +.|+.+|=-+|+-- -...| |. + ....+.+.+..+.++|+.+|
T Consensus 238 GAD~lMVKPal~--YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G-~i-D-e~~~~~Esl~~ikRAGAd~I 308 (320)
T cd04824 238 GADMIMVKPGTP--YLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAG-AF-D-LKRAVLEAMTGFRRAGADII 308 (320)
T ss_pred CCCEEEEcCCch--HHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcC-CC-c-HHHHHHHHHHHHHhcCCCEE
Confidence 566677665433 445555555 4 89999999998521 11234 62 1 12346777777888998876
No 97
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=74.45 E-value=70 Score=35.57 Aligned_cols=149 Identities=20% Similarity=0.212 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEE-EecccCCH------HHHHHHHHHHHhc---CCCeEEEEEEecCCCccCCCCcH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLL-AIETLPAQ------EEAMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKF 480 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDll-l~ETi~~~------~Eakaa~~a~~~~---~~~Pv~iS~t~~~~g~l~~G~~l 480 (698)
.++.++ +.++++.|+++|+|+| ..|+..+. +-.+++..++++. ++...++.+.+. +.+
T Consensus 142 gld~~~----la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit-------~~~- 209 (367)
T cd08205 142 GLSPEE----LAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNIT-------GDP- 209 (367)
T ss_pred CCCHHH----HHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-------CCH-
Confidence 356655 4556666788999998 44444432 2334445555532 233333344432 222
Q ss_pred HHHHHHHHHhCCCCceEEEEcC--CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcC
Q psy13907 481 GLIARDVYAKNPAQLVAVGVNC--LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTG 558 (698)
Q Consensus 481 ~~~v~~~~~~~~~~~~~iGlNC--~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G 558 (698)
.++++........+..++.+|- .+...+..+.+. .+.|+..||+.-..+.... ..--.+.-+.+=|.-.|
T Consensus 210 ~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~--~~lpi~~H~a~~ga~~~~~------~~g~~~~~~~kl~RlaG 281 (367)
T cd08205 210 DELRRRADRAVEAGANALLINPNLVGLDALRALAED--PDLPIMAHPAFAGALSRSP------DYGSHFLLLGKLMRLAG 281 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhc--CCCeEEEccCcccccccCC------CCcCCHHHHHHHHHHcC
Confidence 5555544332235556677776 344444444332 4788999998732221110 00112233334444567
Q ss_pred CeEE-----eecCCCchHHHHHHHhc
Q psy13907 559 VKYV-----GGCCRTNADDMKNVNQV 579 (698)
Q Consensus 559 ~~ii-----GGCCGTtP~hI~al~~~ 579 (698)
+.++ +|==..+++...++++.
T Consensus 282 ad~~~~~~~~gk~~~~~~~~~~la~~ 307 (367)
T cd08205 282 ADAVIFPGPGGRFPFSREECLAIARA 307 (367)
T ss_pred CCccccCCCccCcCCCHHHHHHHHHH
Confidence 6665 65223478888888774
No 98
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=74.10 E-value=64 Score=34.59 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=31.0
Q ss_pred CccEEeecCCCCceeecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCc----eEEEecccc
Q psy13907 223 EAPLKAKPNRSLFETYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENK----LYLIDGGFS 285 (698)
Q Consensus 223 ~~~~~~~pnag~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~~i~dG~~g 285 (698)
+.|+.++++.|.|+..+.+. .|..-.++.. ++|.+-.. .+.+.+ -+|+|=|+|
T Consensus 133 ~~~vVlmh~~g~p~~~~~~~---~y~dv~~~v~---~~l~~~i~----~a~~~GI~~~~IilDPGiG 189 (282)
T PRK11613 133 GLPVCLMHMQGNPKTMQEAP---KYDDVFAEVN---RYFIEQIA----RCEAAGIAKEKLLLDPGFG 189 (282)
T ss_pred CCCEEEEcCCCCCCccccCC---CcccHHHHHH---HHHHHHHH----HHHHcCCChhhEEEeCCCC
Confidence 78899999999998765433 2432222221 24444332 233444 468998877
No 99
>KOG2335|consensus
Probab=73.83 E-value=11 Score=41.46 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhh
Q psy13907 121 GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYV 170 (698)
Q Consensus 121 ~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i 170 (698)
+-|.+++|.-+ |-+.+.++++-+ . .-.|+|++||..|..+
T Consensus 73 D~PLIvQf~~n------dp~~ll~Aa~lv---~-~y~D~idlNcGCPq~~ 112 (358)
T KOG2335|consen 73 DRPLIVQFGGN------DPENLLKAARLV---Q-PYCDGIDLNCGCPQKV 112 (358)
T ss_pred CCceEEEEcCC------CHHHHHHHHHHh---h-hhcCcccccCCCCHHH
Confidence 57999999532 223344554433 2 3459999999988543
No 100
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.47 E-value=1.3e+02 Score=31.93 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEE-----e-cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAI-----E-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIA 146 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~-----E-Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~ 146 (698)
.++.+ .++.+++.+++.|||.|++ | ..-+.+|-+.+++.+.+..+ ++++... +.+..+++
T Consensus 16 ~iD~~----~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg---------~~~~~~ai 81 (279)
T cd00953 16 KIDKE----KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG---------SLNLEESI 81 (279)
T ss_pred CcCHH----HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC---------cCCHHHHH
Confidence 35554 4555688888899999876 3 22367888888887766444 4554431 24567777
Q ss_pred HHHHhhCCCCceEEEE
Q psy13907 147 RDVYAKNPAQLVAVGV 162 (698)
Q Consensus 147 ~~l~~~~~~~~~aIGi 162 (698)
+..+.....|+|++.+
T Consensus 82 ~~a~~a~~~Gad~v~v 97 (279)
T cd00953 82 ELARAAKSFGIYAIAS 97 (279)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 7654444578888776
No 101
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=73.07 E-value=94 Score=33.38 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCCEEEeccc-----------------CCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHH
Q psy13907 421 HRPRIEALIQGGIDLLAIETL-----------------PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi-----------------~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
..+.++.|.++||..|.+|-. -+..|...-++++++. .+.+++|--.. +..+ .+..+.+
T Consensus 94 v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART--Da~~-~~~~~~e 170 (285)
T TIGR02320 94 FRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV--ESLI-LGKGMED 170 (285)
T ss_pred HHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec--cccc-ccCCHHH
Confidence 345677788899999999753 3677888888888754 23344443321 2221 2335888
Q ss_pred HHHHHHHhCCCCceEEEEcC--CChhhhHHHHHHhcC---CCCEEEec
Q psy13907 483 IARDVYAKNPAQLVAVGVNC--LAPHYVESLLTSAGR---DVPLLCCP 525 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC--~~p~~~~~~l~~l~~---~~pl~~yP 525 (698)
+++.......++.++|-+-+ ..++++..+.+.+.. +.|+++-|
T Consensus 171 Ai~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence 98887654446777777765 467888888888863 67887655
No 102
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.04 E-value=24 Score=38.51 Aligned_cols=54 Identities=20% Similarity=0.105 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCCh
Q psy13907 105 AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAP 167 (698)
Q Consensus 105 ~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p 167 (698)
.+++....++.+++..++|+++|+...+. ....+++..+. ..++++|-+|++.|
T Consensus 85 g~d~~~~~i~~~~~~~~~pvi~sI~g~~~------~e~~~~a~~~~---~agad~ielN~scp 138 (334)
T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSA------GGWVDYARQIE---QAGADALELNIYYL 138 (334)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCCH------HHHHHHHHHHH---HcCCCEEEEeCCCC
Confidence 35555555555554357899999943111 11234444442 35799999998763
No 103
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=72.98 E-value=44 Score=36.15 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEe-cc-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~-ET-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.+++ +.++.+++.|++.|||-|++ -| .-+..|-+.+++++.+. .+.||++.... .+..+
T Consensus 25 ~iD~----~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~---------~~t~~ 91 (309)
T cd00952 25 TVDL----DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT---------LNTRD 91 (309)
T ss_pred CcCH----HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc---------CCHHH
Confidence 4666 44567788889999999875 22 34567777777766642 34898877642 33556
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--C-CCCEEEecCC
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--R-DVPLLCCPNS 527 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~-~~pl~~yPNa 527 (698)
+++........+++++.+-= ...+.+..+.+.+. + +.|+++|-|-
T Consensus 92 ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 92 TIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred HHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 66655433335566665543 23466777777775 5 5999999765
No 104
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=72.36 E-value=1.4e+02 Score=31.73 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCCEEEec-ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEc
Q psy13907 423 PRIEALIQGGIDLLAIE-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 501 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~E-Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlN 501 (698)
+-++...+.|+|.+-+- ...++.+++.+++.+++. ++-+.+.+...+.++. +-.-+.+.++.+.+ .++..|.+-
T Consensus 95 ~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~---~Ga~~i~l~ 169 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKA-GKHVEGAICYTGSPVH-TLEYYVKLAKELED---MGADSICIK 169 (275)
T ss_pred HHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCCC-CHHHHHHHHHHHHH---cCCCEEEEc
Confidence 34555678899987553 445778888888888874 4555444433332111 11222344444433 344444442
Q ss_pred C----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 502 C----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 502 C----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
= ..|..+..+++.+. .+.|+.++..
T Consensus 170 DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 200 (275)
T cd07937 170 DMAGLLTPYAAYELVKALKKEVGLPIHLHTH 200 (275)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 2 35899999999886 3477776653
No 105
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=72.12 E-value=13 Score=36.71 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=40.4
Q ss_pred HHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 86 RIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 86 qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
|++..++.|+|.|.+.+| +.++++.+++.+++.... +.+.++ .|-+++.+.+... .++|.|++-+
T Consensus 92 e~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~-v~ie~S--------GGI~~~ni~~ya~----~gvD~isvg~ 156 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR-VKIEAS--------GGITLENIAEYAK----TGVDVISVGS 156 (169)
T ss_dssp HHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT-SEEEEE--------SSSSTTTHHHHHH----TT-SEEEECH
T ss_pred HHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc-EEEEEE--------CCCCHHHHHHHHh----cCCCEEEcCh
Confidence 555566799999999998 568999999988864222 232321 2444545544432 5789888765
No 106
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=71.71 E-value=47 Score=33.68 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCEEEecccCCH--HHHHHHH-HHHHh-cCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCC---
Q psy13907 432 GIDLLAIETLPAQ--EEAMVLA-ELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLA--- 504 (698)
Q Consensus 432 GvDlll~ETi~~~--~Eakaa~-~a~~~-~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~--- 504 (698)
|+|+++=|.+..- ...+... ..... ..+.|+++++... +.+.+.++++.+.+ .+.++|-+||..
T Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~~~---aG~d~ieln~g~p~~ 93 (231)
T cd02801 23 GADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIVEE---LGADGIDLNMGCPSP 93 (231)
T ss_pred CCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHHHh---cCCCEEEEeCCCCHH
Confidence 5999887755432 1111111 11111 1357998888532 23345566665543 578899999833
Q ss_pred --------------hhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 505 --------------PHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 505 --------------p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
++.+..+++.+. ...|+++.-|.| |. . .++..+.++.+.+.|+..+
T Consensus 94 ~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~---------~~--~-~~~~~~~~~~l~~~Gvd~i 155 (231)
T cd02801 94 KVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG---------WD--D-EEETLELAKALEDAGASAL 155 (231)
T ss_pred HHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec---------cC--C-chHHHHHHHHHHHhCCCEE
Confidence 444566666665 346888877654 21 1 1356667777777787666
No 107
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=71.66 E-value=18 Score=38.85 Aligned_cols=63 Identities=17% Similarity=0.025 Sum_probs=39.2
Q ss_pred CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCC-C--CceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCC
Q psy13907 120 PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNP-A--QLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRK 196 (698)
Q Consensus 120 ~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~-~--~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~g 196 (698)
.+.|+++|+. |. .++.++.+..... . ++|+|=+|++.|.... .+.+..-
T Consensus 90 ~~~pvivsi~---------g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~------------------~~~~~~~ 141 (294)
T cd04741 90 SAKPFFISVT---------GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPG------------------KPPPAYD 141 (294)
T ss_pred cCCeEEEECC---------CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCC------------------cccccCC
Confidence 4689999984 33 3444433321112 2 6899999999875310 0112236
Q ss_pred hHHHHHHHHHHHHc
Q psy13907 197 PIQLLSIELELAAA 210 (698)
Q Consensus 197 P~~~~~~~~~l~~~ 210 (698)
|+.+.++++.+.+.
T Consensus 142 ~~~~~~i~~~v~~~ 155 (294)
T cd04741 142 FDATLEYLTAVKAA 155 (294)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999876
No 108
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=71.63 E-value=52 Score=34.79 Aligned_cols=104 Identities=16% Similarity=0.053 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----cCCHHHHHHHHHHHHhcC--CCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEYP--GLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~E-T-----i~~~~Eakaa~~a~~~~~--~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.++++ .++..++.|++.|||.+++= | ..+..|-+.+++.+.+.. +.|+++... +.+..+
T Consensus 17 ~iD~~----~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~ 83 (284)
T cd00950 17 SVDFD----ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG---------SNNTAE 83 (284)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC---------CccHHH
Confidence 46664 45667788888999998753 3 356778777877766532 478776553 345667
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--CCCCEEEecCC
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--RDVPLLCCPNS 527 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~~~pl~~yPNa 527 (698)
+++........++++|.+-= ...+.+..+.+.+. .+.|+++|-|-
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 77766543334555544432 13456777777765 68999999664
No 109
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=71.47 E-value=95 Score=33.27 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCc--CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDLLAIE-TLP--AQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~E-Ti~--~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
+++.+.++.+.+.|+|.|.+- |.- ...++...++.+++. .+.| +++.+.++ .|..+..++..+.
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~H~Hn~----~Gla~AN~laA~~ 222 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAGHFHDT----YGQALANIYASLE 222 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEEEecCC----CCcHHHHHHHHHH
Confidence 566777778888999998765 443 677888888888863 2344 57777776 5777888887774
No 110
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.32 E-value=1.3e+02 Score=31.03 Aligned_cols=157 Identities=12% Similarity=0.109 Sum_probs=87.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCH------HHHHHHHHHHHhcC-CCeEEEEEEec
Q psy13907 397 FLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQ------EEAMVLAELIKEYP-GLKAWISFSCK 469 (698)
Q Consensus 397 ~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~------~Eakaa~~a~~~~~-~~Pv~iS~t~~ 469 (698)
++.||.-.++ ..++.++..+. ++.|.+.|||.|=+-..... .....+++.+++.. +.++ ..-+.
T Consensus 4 tlRDG~q~~~---~~~s~e~~~~i----~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~--~~l~~ 74 (265)
T cd03174 4 TLRDGLQSEG---ATFSTEDKLEI----AEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKL--QALVR 74 (265)
T ss_pred CCCCcccCCC---CCCCHHHHHHH----HHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEE--EEEcc
Confidence 4566543333 23567666554 45577789999866554443 44455555565532 2333 22221
Q ss_pred CCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-CC---------------hhhhHHHHHHhc-CCCCEEEec-CCCCCc
Q psy13907 470 DEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-LA---------------PHYVESLLTSAG-RDVPLLCCP-NSGETF 531 (698)
Q Consensus 470 ~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC-~~---------------p~~~~~~l~~l~-~~~pl~~yP-NaG~~~ 531 (698)
. | .+.++.+.+ .++..|.+-+ .. .+.+...++.+. ....+.+.. .+..+
T Consensus 75 ~------~---~~~i~~a~~---~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~- 141 (265)
T cd03174 75 N------R---EKGIERALE---AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC- 141 (265)
T ss_pred C------c---hhhHHHHHh---CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-
Confidence 1 2 233444433 3345555555 22 233444444444 455555544 22111
Q ss_pred CCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHhccccCCC
Q psy13907 532 DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCR----TNADDMKNVNQVPVKFSI 585 (698)
Q Consensus 532 d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCG----TtP~hI~al~~~v~~~~~ 585 (698)
..+++.+.+.++.+.+.|+..|. .|- -+|+.++.+-+.+++..+
T Consensus 142 ---------~~~~~~l~~~~~~~~~~g~~~i~-l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 142 ---------KTDPEYVLEVAKALEEAGADEIS-LKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred ---------CCCHHHHHHHHHHHHHcCCCEEE-echhcCCcCHHHHHHHHHHHHHhCC
Confidence 14678899999999999987765 222 589999998888776555
No 111
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=71.30 E-value=32 Score=35.86 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHH-------HHHHH----HHHHHhcCCCeEEEEEEecCCCccCCCCc
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIETLPAQE-------EAMVL----AELIKEYPGLKAWISFSCKDEKHTCHGDK 479 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~-------Eakaa----~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~ 479 (698)
.-+.+++.+.-..-++.|.++|+|.+++|.++|+- |.-++ +.-+++.-++|+=|.+--+|
T Consensus 26 ~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd--------- 96 (263)
T COG0434 26 AGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRND--------- 96 (263)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccc---------
Confidence 34899999999999999999999999999988752 22222 22222234678876664322
Q ss_pred HHHHHHHHHHhCCCCceEEEEcC-CChh------------hhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhh
Q psy13907 480 FGLIARDVYAKNPAQLVAVGVNC-LAPH------------YVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPS 546 (698)
Q Consensus 480 l~~~v~~~~~~~~~~~~~iGlNC-~~p~------------~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~ 546 (698)
++.++.-..+.+...|=+|- ++.. .+..+...|. .-+-++.+.-- ..+. ......
T Consensus 97 ---~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~--~~v~vlADv~V----KHa~---~l~~~~ 164 (263)
T COG0434 97 ---AVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG--SRVKVLADVHV----KHAV---HLGNRS 164 (263)
T ss_pred ---cHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc--CCcEEEeecch----hccc---ccCCcC
Confidence 22333211234556677776 4322 1222323333 23444444311 1111 112226
Q ss_pred HHHHHHHHHHc----CCeEEeecCCC--chHHHHHHHhccc
Q psy13907 547 VDTYVPRWLDT----GVKYVGGCCRT--NADDMKNVNQVPV 581 (698)
Q Consensus 547 ~a~~~~~~~~~----G~~iiGGCCGT--tP~hI~al~~~v~ 581 (698)
+.+.+++-++. ++-+-|---|+ .+++|+..++.++
T Consensus 165 ~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~ 205 (263)
T COG0434 165 LEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVD 205 (263)
T ss_pred HHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccC
Confidence 67777775554 35455555554 5567776666664
No 112
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=71.15 E-value=15 Score=39.84 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=31.2
Q ss_pred hCCCC-EEEEecCcCHHHHHHH----HHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCC
Q psy13907 92 QGGID-LLAIETLPAQEEAMVL----AELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL 165 (698)
Q Consensus 92 ~~GVD-~il~ETi~~l~Ea~aa----~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~ 165 (698)
+.|++ +..-|-+.. .++..- .+.+... .+.|+++++. |.+++.+++.+......++++|-+||.
T Consensus 19 ~~g~~~~~~temi~a-~~~~~~~~~~~~~~~~~~~~~p~~~Ql~---------g~~~~~~~~aa~~~~~~~~~~IDlN~G 88 (309)
T PF01207_consen 19 EFGADDLTYTEMISA-KAILRSNKKTIRLLPFLPNERPLIVQLF---------GNDPEDLAEAAEIVAELGFDGIDLNMG 88 (309)
T ss_dssp CCTSSSBEE-S-EEH-HHHHCT-HHHHHHS-GCC-T-TEEEEEE----------S-HHHHHHHHHHHCCTT-SEEEEEE-
T ss_pred HHCCCeEEEcCCEEE-CcccccccceeecccccccccceeEEEe---------eccHHHHHHHHHhhhccCCcEEeccCC
Confidence 45777 777675553 332211 1111111 2468999884 444554444433224468999999998
Q ss_pred Chh
Q psy13907 166 APH 168 (698)
Q Consensus 166 ~p~ 168 (698)
.|.
T Consensus 89 CP~ 91 (309)
T PF01207_consen 89 CPA 91 (309)
T ss_dssp --S
T ss_pred CCH
Confidence 653
No 113
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=70.60 E-value=13 Score=40.01 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEE
Q psy13907 421 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGl 500 (698)
--+++++..++|+|++++|...+..|++.+...+ +.|+++..+. .+.... .+ ++.+.+ .+.....+|.
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~~n~~~--~~~~p~-~s----~~~L~~-lGv~~v~~~~ 235 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTELEMYRRFADAV----KVPILANITE--FGATPL-FT----TEELAS-AGVAMVLYPL 235 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc----CCCEEEEecc--CCCCCC-CC----HHHHHH-cCCcEEEECh
Confidence 5577999999999999999999999988877655 4788877752 121110 12 233322 2445566666
Q ss_pred cCC--ChhhhHHHHHHhc
Q psy13907 501 NCL--APHYVESLLTSAG 516 (698)
Q Consensus 501 NC~--~p~~~~~~l~~l~ 516 (698)
.|. .-..|...++.+.
T Consensus 236 ~~~~aa~~a~~~~~~~l~ 253 (292)
T PRK11320 236 SAFRAMNKAAENVYEAIR 253 (292)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 662 2234555555554
No 114
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=70.35 E-value=89 Score=34.55 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=79.7
Q ss_pred HHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCC
Q psy13907 325 VRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEY 404 (698)
Q Consensus 325 l~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey 404 (698)
+++|+|.|.... .+|...+...++.+.+++.+.....+++||+.- ..|.+.+.-. -+.+|
T Consensus 131 ~~~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~G--------------l~v~~~is~~-----fg~p~ 190 (347)
T PLN02746 131 IAAGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKHS--------------IPVRGYVSCV-----VGCPI 190 (347)
T ss_pred HHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------------CeEEEEEEee-----ecCCc
Confidence 578999765553 566666665567877777777777777776542 2333333210 01122
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHH
Q psy13907 405 RGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG 481 (698)
Q Consensus 405 ~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~ 481 (698)
.+ ..+.+ ++.+.++.+.+.|+|-|-+= |+ -+..++...+.++++.... .-|.+-+.+ ..|..+.
T Consensus 191 ~~----r~~~~----~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~-~~i~~H~Hn----d~GlA~A 257 (347)
T PLN02746 191 EG----PVPPS----KVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPV-DKLAVHFHD----TYGQALA 257 (347)
T ss_pred cC----CCCHH----HHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCC-CeEEEEECC----CCChHHH
Confidence 22 24554 45555666788999988654 43 4567777888888753221 135777776 5677777
Q ss_pred HHHHHHH
Q psy13907 482 LIARDVY 488 (698)
Q Consensus 482 ~~v~~~~ 488 (698)
.++.++.
T Consensus 258 N~lAA~~ 264 (347)
T PLN02746 258 NILVSLQ 264 (347)
T ss_pred HHHHHHH
Confidence 7777774
No 115
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=70.16 E-value=90 Score=34.29 Aligned_cols=147 Identities=8% Similarity=0.035 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-c-CcC-HHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCc-----cCC-C---
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE-T-LPA-QEE-AMVLAELIKEY---PGLKAWISFSCKDEKH-----TCH-G--- 139 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E-T-i~~-l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~-----l~~-G--- 139 (698)
..++.+.|++-++.|.++|++.|=+- + +.. ..+ +...++++... ...++++.+.+...+. ... |
T Consensus 151 ~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~~~~~v~~~n~~~~g~~~~v~~HvC~G~~~~~~~~~~~~~~~~~ 230 (339)
T PRK09121 151 AWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEW 230 (339)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhhHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcccccccccccc
Confidence 45688899999999999999977664 1 221 122 44555555542 2356777666553220 000 0
Q ss_pred CCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcC
Q psy13907 140 DKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQ 219 (698)
Q Consensus 140 ~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~ 219 (698)
.+...++..+. ..++|.+.+-+..+..-...++.+++..--+++=+.-...-+-|+.+...+++..+.
T Consensus 231 g~y~~i~~~l~---~~~vd~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~--------- 298 (339)
T PRK09121 231 RQYEEAFPKLQ---KSNIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQF--------- 298 (339)
T ss_pred ccHHHHHHHHH---hCCCCEEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHh---------
Confidence 24456666663 368999999987665434455555422111334444555578899999998888775
Q ss_pred CCcCccEEeecCCCCc
Q psy13907 220 IPFEAPLKAKPNRSLF 235 (698)
Q Consensus 220 ~~~~~~~~~~pnag~p 235 (698)
+|. .-|.+-|+-|+-
T Consensus 299 v~~-~~l~lspdCGf~ 313 (339)
T PRK09121 299 VDA-DKLYPCTNCGMA 313 (339)
T ss_pred CCH-HHEEECCCCCCC
Confidence 222 349999999963
No 116
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=69.72 E-value=24 Score=37.25 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCcC
Q psy13907 74 TTPQELIDYHRPRIEALIQGGIDLLAIETLPA 105 (698)
Q Consensus 74 ~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~ 105 (698)
.+.+++.+.=..=+++|.++|+|.+++|.+.|
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d 52 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFD 52 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46788888888889999999999999999876
No 117
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.61 E-value=79 Score=33.19 Aligned_cols=96 Identities=10% Similarity=0.073 Sum_probs=56.6
Q ss_pred HHHHHhCCCCEEEec-ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEc--
Q psy13907 425 IEALIQGGIDLLAIE-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN-- 501 (698)
Q Consensus 425 i~~L~~~GvDlll~E-Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlN-- 501 (698)
++...+.|+|.+-+- ..++..+++.+++.+++. +..+.++ +.+.++. +-.-+.+.++.+.+ .++..|.+-
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~-G~~v~~~--~~~~~~~-~~~~~~~~~~~~~~---~G~d~i~l~DT 163 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKL-GMDVVGF--LMMSHMA-SPEELAEQAKLMES---YGADCVYVTDS 163 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHC-CCeEEEE--EEeccCC-CHHHHHHHHHHHHH---cCCCEEEEcCC
Confidence 455667899987543 455667788888888874 5544444 4342221 11222344444432 455666653
Q ss_pred --CCChhhhHHHHHHhc--CC-CCEEEecCC
Q psy13907 502 --CLAPHYVESLLTSAG--RD-VPLLCCPNS 527 (698)
Q Consensus 502 --C~~p~~~~~~l~~l~--~~-~pl~~yPNa 527 (698)
+..|..+..+++.+. .+ .|+.++...
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn 194 (263)
T cd07943 164 AGAMLPDDVRERVRALREALDPTPVGFHGHN 194 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCceEEEEecC
Confidence 246999999999886 33 377766543
No 118
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=69.49 E-value=44 Score=34.65 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=60.3
Q ss_pred HHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCCh
Q psy13907 88 EALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAP 167 (698)
Q Consensus 88 ~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p 167 (698)
+.+.+.|-.-++.+- .++-.+..+..+++ .+.|+.+++. |.++++..+....... ..+.|-+||+.|
T Consensus 42 ~~~~~~~~~ef~~~~--~~~~~~~~~~~~~~-~~~p~~vqi~---------g~~~~~~~~aa~~~~~-~~~~ielN~gCP 108 (233)
T cd02911 42 RKLVKRGRKEFLPDD--PLEFIEGEIKALKD-SNVLVGVNVR---------SSSLEPLLNAAALVAK-NAAILEINAHCR 108 (233)
T ss_pred HHHHhcCCccccccc--hHHHHHHHHHHhhc-cCCeEEEEec---------CCCHHHHHHHHHHHhh-cCCEEEEECCCC
Confidence 345555655454443 23334444555555 4679998883 4455544443322122 358999999875
Q ss_pred hhhHHHHHHhHhhcccccccccccc-cCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCC
Q psy13907 168 HYVESLLTSAEVEGQSLELPVNNTL-ISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSL 234 (698)
Q Consensus 168 ~~i~~~l~~~~~~~~~~~~p~~~~~-~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~ 234 (698)
...-. +. ..|. +-.-|+.+.++++.+++. +.||+++=..|.
T Consensus 109 ~~~v~-----~~---------g~G~~Ll~~p~~l~eiv~avr~~------------~~pVsvKir~g~ 150 (233)
T cd02911 109 QPEMV-----EA---------GAGEALLKDPERLSEFIKALKET------------GVPVSVKIRAGV 150 (233)
T ss_pred cHHHh-----cC---------CcchHHcCCHHHHHHHHHHHHhc------------CCCEEEEEcCCc
Confidence 43100 00 0011 123588899999988754 678888766663
No 119
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=69.14 E-value=38 Score=36.91 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=23.7
Q ss_pred CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCC
Q psy13907 120 PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 120 ~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
.+.|+++|+. |.+.++..+.+......++|+|=+||+.
T Consensus 98 ~~~pvi~si~---------g~~~~~~~~~a~~~~~~gad~iElN~s~ 135 (325)
T cd04739 98 VSIPVIASLN---------GVSAGGWVDYARQIEEAGADALELNIYA 135 (325)
T ss_pred cCCeEEEEeC---------CCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4789999983 3344433333322223579999999986
No 120
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=68.46 E-value=58 Score=35.80 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=54.4
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEEec------------CcC-------------HHHHHHHHHHHHhcCC--C
Q psy13907 73 STTPQE---LIDYHRPRIEALIQGGIDLLAIET------------LPA-------------QEEAMVLAELIKEYPG--L 122 (698)
Q Consensus 73 ~~s~ee---l~~~~~~qi~~l~~~GVD~il~ET------------i~~-------------l~Ea~aa~~a~~~~~~--~ 122 (698)
.+|.+| +.+.|..-++...++|.|.+=+=- ..+ ..-+..+++++++..+ .
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 466555 556666666667789999986633 111 4566777888887544 4
Q ss_pred eEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 123 KAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 123 Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
++.+-++..+ ....|.+++++++.+......++|.|-+-.
T Consensus 206 ~v~iRi~~~D--~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 206 IIIYRLSMLD--LVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred eEEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4555554332 234577887776654333346778776643
No 121
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.31 E-value=24 Score=37.67 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
+|+...++.|+|+|++++| +.++++.+++.++.. ++..+.+| .|-+++.+.+... .|+|+|.+-
T Consensus 193 eea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAs----------GgIt~~ni~~ya~----~GvD~IsvG 257 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEAS----------GNITLENINAYAK----SGVDAISSG 257 (273)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEE----------CCCCHHHHHHHHH----cCCCEEEeC
Confidence 3455556789999999996 899999999876541 22223322 2556777766553 688888876
Q ss_pred C
Q psy13907 164 C 164 (698)
Q Consensus 164 C 164 (698)
+
T Consensus 258 ~ 258 (273)
T PRK05848 258 S 258 (273)
T ss_pred h
Confidence 6
No 122
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=68.11 E-value=44 Score=36.25 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHH---HHHHHHHHHh-------cCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEE---AMVLAELIKE-------YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 151 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~E---a~aa~~a~~~-------~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~ 151 (698)
.|+..++.+ +|+|+..=|-++.-.- -+.......+ -.+.|+++++. |.++++.++....
T Consensus 15 ~fR~l~~~~--g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~---------g~~p~~~~~aA~~ 83 (312)
T PRK10550 15 LVRELLTEV--NDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL---------GQYPQWLAENAAR 83 (312)
T ss_pred HHHHHHHHh--CCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec---------cCCHHHHHHHHHH
Confidence 455444433 3589999998874211 1111111111 12478888873 5565554443322
Q ss_pred hCCCCceEEEEcCCChhhhHHHHHHhHhhccccccccccc-ccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeec
Q psy13907 152 KNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNT-LISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKP 230 (698)
Q Consensus 152 ~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~-~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 230 (698)
....+.++|-|||+.|...-. +.+ .| .+-.-|..+.++++.+.+. . |-+.||+++=
T Consensus 84 ~~~~g~d~IdiN~GCP~~~v~------~~g--------~Gs~Ll~~~~~~~eiv~avr~~------~---~~~~pVsvKi 140 (312)
T PRK10550 84 AVELGSWGVDLNCGCPSKTVN------GSG--------GGATLLKDPELIYQGAKAMREA------V---PAHLPVTVKV 140 (312)
T ss_pred HHHcCCCEEEEeCCCCchHHh------cCC--------CchHhhcCHHHHHHHHHHHHHh------c---CCCcceEEEE
Confidence 223689999999998642110 000 01 1234688899999998876 2 1147888887
Q ss_pred CCCC
Q psy13907 231 NRSL 234 (698)
Q Consensus 231 nag~ 234 (698)
..|+
T Consensus 141 R~g~ 144 (312)
T PRK10550 141 RLGW 144 (312)
T ss_pred ECCC
Confidence 6664
No 123
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=67.80 E-value=1.2e+02 Score=32.47 Aligned_cols=108 Identities=8% Similarity=0.079 Sum_probs=67.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCH-HHHHHHHHHHHH
Q psy13907 10 LGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTP-QELIDYHRPRIE 88 (698)
Q Consensus 10 ~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~-eel~~~~~~qi~ 88 (698)
++.+.+++.+.....+++|++. ...|..++ -++ .+. +. +.+.++-.+.++
T Consensus 106 ~~~t~~e~l~~~~~~v~~a~~~--------------g~~v~~~~--ed~-------~r~------d~~~~v~~~~~~~~~ 156 (279)
T cd07947 106 LKMTREEAMEKYLEIVEEALDH--------------GIKPRCHL--EDI-------TRA------DIYGFVLPFVNKLMK 156 (279)
T ss_pred hCcCHHHHHHHHHHHHHHHHHC--------------CCeEEEEE--Ecc-------cCC------CcccchHHHHHHHHH
Confidence 5777677766666676666542 23455444 111 111 11 334455566666
Q ss_pred HHHhCCCC-EE-EEecCcCH---------HHHHHHHHHHHhcCCCe-EEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 89 ALIQGGID-LL-AIETLPAQ---------EEAMVLAELIKEYPGLK-AWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 89 ~l~~~GVD-~i-l~ETi~~l---------~Ea~aa~~a~~~~~~~P-v~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
...+.|+| .| +.-|+-.. .++...++.+++..+.| +.+++.+.++ .|.-+..++..+.
T Consensus 157 ~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~----~Gla~AN~laA~~ 226 (279)
T cd07947 157 LSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHND----FYKAVANAVAAWL 226 (279)
T ss_pred HHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCC----CChHHHHHHHHHH
Confidence 66679999 45 77888733 67888888887643444 5578888776 4777777777764
No 124
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=67.67 E-value=1.2e+02 Score=33.51 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-----cCcCHHHHHHHHHHHHhc----CCCeEEEEEEEcCCCccCCCCCHHHHH
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEY----PGLKAWISFSCKDEKHTCHGDKFGLIA 146 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E-----Ti~~l~Ea~aa~~a~~~~----~~~Pv~iSft~~~~g~l~~G~~~~~~~ 146 (698)
.+++...|++.++.|.++||+.|=|- +..+..++..+.++.+.. ++.++.++..|.+ ...++
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~---------~~~~~ 247 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGS---------LGENL 247 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccc---------hHHHH
Confidence 57788999999999999999987653 233334556666666654 1456777755432 23555
Q ss_pred HHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhh---ccc--ccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCC
Q psy13907 147 RDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVE---GQS--LELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIP 221 (698)
Q Consensus 147 ~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~---~~~--~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~ 221 (698)
..+. ..+++++++-+.... .-++.++.. .+. +++=+.-....+-++.+...++++.+. .
T Consensus 248 ~~l~---~l~Vd~l~le~~~~~---~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~------v---- 311 (360)
T cd03312 248 DLLA---SLPVDGLHLDLVRGP---ENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAI------L---- 311 (360)
T ss_pred HHHH---cCCCCEEEEEecCCc---ccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHH------h----
Confidence 5543 478999999997652 222333221 111 122222223467888999999988774 1
Q ss_pred cCccEEeecCCCC
Q psy13907 222 FEAPLKAKPNRSL 234 (698)
Q Consensus 222 ~~~~~~~~pnag~ 234 (698)
..-|++.|+.|+
T Consensus 312 -~~~l~lsp~CgL 323 (360)
T cd03312 312 -GDRLVVSPSCSL 323 (360)
T ss_pred -cCcEEEECCCCC
Confidence 133999999887
No 125
>PLN02591 tryptophan synthase
Probab=67.60 E-value=1.7e+02 Score=30.84 Aligned_cols=156 Identities=10% Similarity=0.090 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCCCEEEec-ccC---------------------CHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCC
Q psy13907 419 DYHRPRIEALIQGGIDLLAIE-TLP---------------------AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCH 476 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~E-Ti~---------------------~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~ 476 (698)
+...+.++.|.++|||+|=+- =++ ++...-..+..+++..+.|++ -++-.+ --.
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i-lm~Y~N-~i~-- 91 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV-LFTYYN-PIL-- 91 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-EEeccc-HHH--
Confidence 446678889999999997322 111 122222233333333457864 343322 111
Q ss_pred CCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc-CC-CCEEE-ecCCCCCc-----CCCCccccc--------
Q psy13907 477 GDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG-RD-VPLLC-CPNSGETF-----DPGQRIWMN-------- 540 (698)
Q Consensus 477 G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~-~~-~pl~~-yPNaG~~~-----d~~~g~~~~-------- 540 (698)
...+...++.+.+ .+++++-+.=..+++...+.+.+. .. .++.+ -||..... ....| |.|
T Consensus 92 ~~G~~~F~~~~~~---aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~g-FIY~Vs~~GvT 167 (250)
T PLN02591 92 KRGIDKFMATIKE---AGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEG-FVYLVSSTGVT 167 (250)
T ss_pred HhHHHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCC-cEEEeeCCCCc
Confidence 1223444555543 567777777777888888777765 22 22333 37764200 00111 211
Q ss_pred ---CCChhhHHHHHHHHHHc-CCeEEeecCCCchHHHHHHHhc-ccc
Q psy13907 541 ---KDSVPSVDTYVPRWLDT-GVKYVGGCCRTNADDMKNVNQV-PVK 582 (698)
Q Consensus 541 ---~~~p~~~a~~~~~~~~~-G~~iiGGCCGTtP~hI~al~~~-v~~ 582 (698)
...++.+.+++++..+. ++-++=|=-=++|+|++++.+. .++
T Consensus 168 G~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADG 214 (250)
T PLN02591 168 GARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADG 214 (250)
T ss_pred CCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCE
Confidence 12245566666655553 4555545555679999998887 654
No 126
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=67.31 E-value=61 Score=34.43 Aligned_cols=143 Identities=10% Similarity=0.039 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~E-T-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.++++ .++..++.+++.|||-+++= | .-+..|-+.+++.+.+. .+.||++... ..+..+
T Consensus 15 ~iD~~----~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~s~~~ 81 (285)
T TIGR00674 15 SVDFA----ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG---------SNATEE 81 (285)
T ss_pred CcCHH----HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC---------CccHHH
Confidence 46664 45677788888999998763 2 34567777777665542 3478887653 234666
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL 555 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~ 555 (698)
+++........+++++-+== .+.+.+..+.+.+. .+.|+++|-|-. ..| . +.+++.+.+ ..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~-----~tg-~--~l~~~~l~~----L~ 149 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPS-----RTG-V--SLYPETVKR----LA 149 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcH-----Hhc-C--CCCHHHHHH----HH
Confidence 66665433334555544432 24466777777775 689999996542 112 1 345554443 33
Q ss_pred HcCCeEEee--cCCCchHHHHHHHhcc
Q psy13907 556 DTGVKYVGG--CCRTNADDMKNVNQVP 580 (698)
Q Consensus 556 ~~G~~iiGG--CCGTtP~hI~al~~~v 580 (698)
+.. ||+|= +++ ...++..+.+..
T Consensus 150 ~~~-~v~giK~s~~-d~~~~~~l~~~~ 174 (285)
T TIGR00674 150 EEP-NIVAIKEATG-NLERISEIKAIA 174 (285)
T ss_pred cCC-CEEEEEeCCC-CHHHHHHHHHhc
Confidence 333 56662 444 455666665443
No 127
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=67.08 E-value=1.4e+02 Score=32.33 Aligned_cols=148 Identities=12% Similarity=0.044 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-c----CcCH---HH----HHHHHHHHHh-cCCCeEEEEEEEcCC-C-ccCCCC
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE-T----LPAQ---EE----AMVLAELIKE-YPGLKAWISFSCKDE-K-HTCHGD 140 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E-T----i~~l---~E----a~aa~~a~~~-~~~~Pv~iSft~~~~-g-~l~~G~ 140 (698)
.+++.+.+++.++.|.+.|++.|-+. . ..+. ++ ++.+.+++.. -.+.++++...+.+. + +..+|
T Consensus 150 ~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~- 228 (332)
T cd03311 150 AMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEG- 228 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccC-
Confidence 46788899999999999999976654 2 2211 12 3334444443 235677777765542 2 22233
Q ss_pred CHHHHHHHHHhhCCCCceEEEEcCCCh-hhhHHHHHHhHhhccc--ccccccccccCCChHHHHHHHHHHHHcCCCCCCC
Q psy13907 141 KFGLIARDVYAKNPAQLVAVGVNCLAP-HYVESLLTSAEVEGQS--LELPVNNTLISRKPIQLLSIELELAAAGKMPSGT 217 (698)
Q Consensus 141 ~~~~~~~~l~~~~~~~~~aIGiNC~~p-~~i~~~l~~~~~~~~~--~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~ 217 (698)
+...++..+.. .+++++++-.... ..-...++.+.. .+. +++=......-+.|+.+.+.+++..+. .
T Consensus 229 ~y~~i~~~l~~---~~vd~~~le~~~~~~~~~~~l~~~~~-~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~------~ 298 (332)
T cd03311 229 GYEPIAEYIFE---LDVDVFFLEYDNSRAGGLEPLKELPY-DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKY------V 298 (332)
T ss_pred cHHHHHHHHHh---CCCCEEEEEEcCCCCcchHHHHhCCC-CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhh------C
Confidence 34566666642 4689999988653 112222233321 111 222222233567899999999988775 1
Q ss_pred cCCCcCccEEeecCCCCceee
Q psy13907 218 TQIPFEAPLKAKPNRSLFETY 238 (698)
Q Consensus 218 ~~~~~~~~~~~~pnag~p~~~ 238 (698)
+ ...+.+-|+-|++...
T Consensus 299 ---~-~~~l~lsp~CGl~~~~ 315 (332)
T cd03311 299 ---P-LEQLWVSPDCGFATRE 315 (332)
T ss_pred ---C-HHHEEECCCCCCCcCC
Confidence 1 1348999999987654
No 128
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=66.83 E-value=14 Score=39.53 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEE
Q psy13907 421 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGl 500 (698)
--+++++..++|+|++++|...+..+++.+...+ ..|+++..+.. +.+. -.++ +.+.+ .+....++|.
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i----~~Pl~~n~~~~--~~~p-~~s~----~eL~~-lGv~~v~~~~ 230 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTSLEEFRQFAKAV----KVPLLANMTEF--GKTP-LFTA----DELRE-AGYKMVIYPV 230 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEeccC--CCCC-CCCH----HHHHH-cCCcEEEEch
Confidence 4577899999999999999999999988766654 37887776532 2111 0122 33322 2456667777
Q ss_pred cCC--ChhhhHHHHHHhc
Q psy13907 501 NCL--APHYVESLLTSAG 516 (698)
Q Consensus 501 NC~--~p~~~~~~l~~l~ 516 (698)
.+. --..|...++.+.
T Consensus 231 ~~~~aa~~a~~~~~~~l~ 248 (285)
T TIGR02317 231 TAFRAMNKAAEAVYNEIK 248 (285)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 663 2344666666654
No 129
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=66.73 E-value=1.1e+02 Score=33.24 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHH
Q psy13907 424 RIEALIQGGIDLLAIETLPAQEEAM 448 (698)
Q Consensus 424 qi~~L~~~GvDlll~ETi~~~~Eak 448 (698)
.+..+.+.|+|.|-++...++.+++
T Consensus 247 ~~~~l~~~g~d~ls~d~~~~l~~~~ 271 (340)
T TIGR01463 247 ILRDIANNGCFGFSVDMKPGMDHAK 271 (340)
T ss_pred hHHHHHHhCCCEEeecCCCCHHHHH
Confidence 3555677899999999988887654
No 130
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=66.67 E-value=29 Score=37.54 Aligned_cols=64 Identities=13% Similarity=-0.042 Sum_probs=38.4
Q ss_pred CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCC-ceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChH
Q psy13907 120 PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ-LVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPI 198 (698)
Q Consensus 120 ~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~-~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~ 198 (698)
.+.|+++|+.. .++++..+.+...+..+ +|+|=+|++.|.. .. ...+...|+
T Consensus 91 ~~~pvI~Si~G---------~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~-~~-----------------~~~~g~d~~ 143 (310)
T PRK02506 91 PNKPHFLSVVG---------LSPEETHTILKKIQASDFNGLVELNLSCPNV-PG-----------------KPQIAYDFE 143 (310)
T ss_pred CCCCEEEEEEe---------CcHHHHHHHHHHHhhcCCCCEEEEECCCCCC-CC-----------------ccccccCHH
Confidence 36899999843 33444433332222345 8999999998642 10 011122478
Q ss_pred HHHHHHHHHHHc
Q psy13907 199 QLLSIELELAAA 210 (698)
Q Consensus 199 ~~~~~~~~l~~~ 210 (698)
.+.++++.+.+.
T Consensus 144 ~~~~i~~~v~~~ 155 (310)
T PRK02506 144 TTEQILEEVFTY 155 (310)
T ss_pred HHHHHHHHHHHh
Confidence 888888888775
No 131
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=66.57 E-value=50 Score=36.35 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=75.4
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHH-HHhc-CCCeEEEEEEecCCCccCCC----CcHHHHHHHHHHhCCCCceE
Q psy13907 424 RIEALIQGGIDLLAIETLPAQEEAMVLAEL-IKEY-PGLKAWISFSCKDEKHTCHG----DKFGLIARDVYAKNPAQLVA 497 (698)
Q Consensus 424 qi~~L~~~GvDlll~ETi~~~~Eakaa~~a-~~~~-~~~Pv~iS~t~~~~g~l~~G----~~l~~~v~~~~~~~~~~~~~ 497 (698)
.++.+.++|+|.++.= +..++. ...+ .+.|+++-++- ...+... +.+...++..+. .+.++
T Consensus 96 ~i~~a~~~g~dAv~~~--------~G~l~~~~~~~~~~iplIlkln~--~t~l~~~~~~~~~l~~sVedAlr---LGAdA 162 (348)
T PRK09250 96 IVKLAIEAGCNAVAST--------LGVLEAVARKYAHKIPFILKLNH--NELLSYPNTYDQALTASVEDALR---LGAVA 162 (348)
T ss_pred HHHHHHhcCCCEEEeC--------HHHHHhccccccCCCCEEEEeCC--CCCCCCCCCCcccceecHHHHHH---CCCCE
Confidence 4566778899999862 556555 3333 35888777652 1122111 112222333322 56678
Q ss_pred EEEcC-CChhhhHHHHHHhc--------CCCCEE--EecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecC
Q psy13907 498 VGVNC-LAPHYVESLLTSAG--------RDVPLL--CCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCC 566 (698)
Q Consensus 498 iGlNC-~~p~~~~~~l~~l~--------~~~pl~--~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCC 566 (698)
||+.+ .|.+.-...++.++ ...|++ +||=.+... .++.| ...|+.++..++--++.|+.||===-
T Consensus 163 V~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~--~~~d~--~~~~d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 163 VGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFK--KDGDY--HTAADLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccC--Ccccc--cccHHHHHHHHHHHHHHcCCEEEecC
Confidence 99988 66554344444442 578866 488754322 11111 22466777777878899999987433
Q ss_pred CCchHHHHH
Q psy13907 567 RTNADDMKN 575 (698)
Q Consensus 567 GTtP~hI~a 575 (698)
-++++-.+.
T Consensus 239 p~~~~~f~~ 247 (348)
T PRK09250 239 PTNNGGYKA 247 (348)
T ss_pred CCChhhHHH
Confidence 334444333
No 132
>PRK08508 biotin synthase; Provisional
Probab=66.51 E-value=1.4e+02 Score=31.78 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe----cCc--CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHH
Q psy13907 74 TTPQELIDYHRPRIEALIQGGIDLLAIE----TLP--AQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIA 146 (698)
Q Consensus 74 ~s~eel~~~~~~qi~~l~~~GVD~il~E----Ti~--~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~ 146 (698)
.+.|++.+. ++...+.|++-|.+= +++ .++-+..+++.+|+. +++.+|+| .|..-.+.+
T Consensus 40 ~s~eeI~~~----a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s----------~G~~~~e~l 105 (279)
T PRK08508 40 KDIEQIVQE----AKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC----------NGTASVEQL 105 (279)
T ss_pred CCHHHHHHH----HHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec----------CCCCCHHHH
Confidence 567777664 333445688877663 233 344456666677653 35555554 244446777
Q ss_pred HHHHhhCCCCceEEEEc-----------CCC--hhhhHHHHHHhHhhccccccccccccc---CCChHHHHHHHHHHHHc
Q psy13907 147 RDVYAKNPAQLVAVGVN-----------CLA--PHYVESLLTSAEVEGQSLELPVNNTLI---SRKPIQLLSIELELAAA 210 (698)
Q Consensus 147 ~~l~~~~~~~~~aIGiN-----------C~~--p~~i~~~l~~~~~~~~~~~~p~~~~~~---~~gP~~~~~~~~~l~~~ 210 (698)
+.+++ .|++.+.+| |+. ++.+...++.+++ +++++..+-+ -+.++++.+++..+++.
T Consensus 106 ~~Lk~---aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~----~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L 178 (279)
T PRK08508 106 KELKK---AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKE----AGLGLCSGGIFGLGESWEDRISFLKSLASL 178 (279)
T ss_pred HHHHH---cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHH----cCCeecceeEEecCCCHHHHHHHHHHHHcC
Confidence 77753 678888776 421 2333334444433 4566654444 67789999999988765
Q ss_pred CCCCCCCcCCCcCccEEeecCCCCce
Q psy13907 211 GKMPSGTTQIPFEAPLKAKPNRSLFE 236 (698)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~pnag~p~ 236 (698)
+ ..-+||.. ..||.|.|-
T Consensus 179 ~-----~~svpl~~---~~p~~~t~~ 196 (279)
T PRK08508 179 S-----PHSTPINF---FIPNPALPL 196 (279)
T ss_pred C-----CCEEeeCC---cCCCCCCCC
Confidence 2 11144432 568888875
No 133
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=66.48 E-value=50 Score=37.22 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCEEEEecC-cCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 83 HRPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il~ETi-~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
..++++.|+++|||+|++-+- ++-..+...++.+|+. +++++++.. -.+.+++...+. .++|+|
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~----------V~T~e~a~~l~~----aGaD~I 219 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGN----------IVTKEAALDLIS----VGADCL 219 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEe----------cCCHHHHHHHHH----cCCCEE
Confidence 456899999999999998853 3445566677777763 577777544 234555555442 678887
Q ss_pred EE
Q psy13907 161 GV 162 (698)
Q Consensus 161 Gi 162 (698)
.+
T Consensus 220 ~v 221 (404)
T PRK06843 220 KV 221 (404)
T ss_pred EE
Confidence 65
No 134
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.44 E-value=1.1e+02 Score=31.99 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=31.3
Q ss_pred CccEEeecCCCCceeecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCc----eEEEeccccc
Q psy13907 223 EAPLKAKPNRSLFETYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENK----LYLIDGGFSS 286 (698)
Q Consensus 223 ~~~~~~~pnag~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~~i~dG~~gt 286 (698)
+.|+.++++-|-|...+... .|....++... +|.+-. +.+.+.+ -+++|-++|+
T Consensus 120 ~~~vV~m~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~i----~~~~~~Gi~~~~IilDPg~g~ 177 (258)
T cd00423 120 GAPVVLMHMDGTPQTMQNNP---YYADVVDEVVE---FLEERV----EAATEAGIPPEDIILDPGIGF 177 (258)
T ss_pred CCCEEEECcCCCCcccccCC---CcchHHHHHHH---HHHHHH----HHHHHcCCCHHHEEEeCCCCc
Confidence 68899999888776443211 35555555443 444333 2233443 5788888774
No 135
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=65.94 E-value=1.3e+02 Score=29.08 Aligned_cols=144 Identities=16% Similarity=0.077 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCC-CCcEEEEec
Q psy13907 313 NRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS-RHVRVAGSL 391 (698)
Q Consensus 313 ~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~-~~~~VAGsi 391 (698)
+.+.++++.+..+++|+|-|.++- ++.+.+++.. .+ +-..++|.-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------------------~~i~~~~~~~-------~~~~~~v~~~v~ 56 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------------------GYVRLAADAL-------AGSDVPVIVVVG 56 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------------------HHHHHHHHHh-------CCCCCeEEEEec
Confidence 788899999999999999888774 1222222222 12 334566654
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCC------HHHHHHHHHHHHhc--CCCeEE
Q psy13907 392 GSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPA------QEEAMVLAELIKEY--PGLKAW 463 (698)
Q Consensus 392 GP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~------~~Eakaa~~a~~~~--~~~Pv~ 463 (698)
.+.+. ... +.-.++++...+.|+|.+++-.-+. ..++...+..+.+. .++|++
T Consensus 57 ~~~~~---------------~~~----~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 57 FPTGL---------------TTT----EVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCCCC---------------CcH----HHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 44321 111 2334566777888999998864332 23444444444443 478987
Q ss_pred EEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCC------ChhhhHHHHHHh
Q psy13907 464 ISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL------APHYVESLLTSA 515 (698)
Q Consensus 464 iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~------~p~~~~~~l~~l 515 (698)
+-.... ++ .+.....+........++++|-.... ....+..+.+..
T Consensus 118 iy~~p~---~~---~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 118 VILETR---GL---KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAV 169 (201)
T ss_pred EEEECC---CC---CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhc
Confidence 765321 11 23333333211111256666666654 445555554433
No 136
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=65.73 E-value=1.2e+02 Score=33.58 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-cC-----------------cCHHH-HHHHHHHHHhc-----CCCeEEEEEEEc
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE-TL-----------------PAQEE-AMVLAELIKEY-----PGLKAWISFSCK 131 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E-Ti-----------------~~l~E-a~aa~~a~~~~-----~~~Pv~iSft~~ 131 (698)
..++...|++-++.|.++|++.|=|. +. .+.++ +...+++++.. .++.+++.+.+.
T Consensus 165 ~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~G 244 (368)
T PRK06520 165 FDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRG 244 (368)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecC
Confidence 46688889999999999999888764 21 13333 23344555432 245577777764
Q ss_pred CC-C-ccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhH-HHHHHhHhhccc--ccccccccccCCChHHHHHHHHH
Q psy13907 132 DE-K-HTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVE-SLLTSAEVEGQS--LELPVNNTLISRKPIQLLSIELE 206 (698)
Q Consensus 132 ~~-g-~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~-~~l~~~~~~~~~--~~~p~~~~~~~~gP~~~~~~~~~ 206 (698)
+- + +..+| +...++..+.. ..+++++.+....+..=. ..|+.+....+. +++=+.-...-+-|+.+...+++
T Consensus 245 n~~~~~~~~~-~y~~i~~~L~~--~~~vd~~~lE~~~~r~g~~e~L~~l~~~~k~v~lGvvd~~~~~vE~~e~I~~rI~~ 321 (368)
T PRK06520 245 NFRSTWISEG-GYEPVAETLFG--GVNVDAFFLEYDNERAGGFEPLRFIPPGHQQVVLGLITTKNGELENADDVKARLAE 321 (368)
T ss_pred CCCCcccccc-chhHHHHHHHh--hcCCCeEEEEeccCCCCCcchHHHhhhcCCEEEeeEEeCCCCCCCCHHHHHHHHHH
Confidence 32 2 33344 46677776532 367899988885432100 122223221112 23344455557889999999998
Q ss_pred HHHcCCCCCCCcCCCcCccEEeecCCCCceeecCee
Q psy13907 207 LAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVF 242 (698)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~~~~~~ 242 (698)
..+. +|.+ -|.+-|+-|+-...+|..
T Consensus 322 a~~~---------v~~~-~l~lspdCGf~s~~~~~~ 347 (368)
T PRK06520 322 AAKF---------VPLE-QLCLSPQCGFASTEEGNS 347 (368)
T ss_pred HHHh---------CCHH-HEeeCcccCCCccccCCC
Confidence 8775 2323 399999999987666554
No 137
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.72 E-value=28 Score=37.42 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 86 RIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 86 qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
|++..++.|+|+|++..|+ .+|++.+++.+++. .+..+.+| .|-+++.+.+... .|+|.|.+--
T Consensus 211 ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v~ieaS----------GGI~~~ni~~yA~----tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTVLLESS----------GGLTLDTAAAYAE----TGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCEEEEEE----------CCCCHHHHHHHHh----cCCCEEEeCh
Confidence 4444567999999999988 99999999987653 22223322 3667777766553 6888887754
No 138
>PRK15452 putative protease; Provisional
Probab=65.67 E-value=24 Score=40.31 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCCEEEEe----------cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCC
Q psy13907 85 PRIEALIQGGIDLLAIE----------TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNP 154 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~E----------Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~ 154 (698)
+++++.++.|+|.+.+. .-.+.+|++.+++.+++ .++.+++++.. +.....+..+...+.....
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~-~g~kvyvt~n~-----i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA-LGKKFYVVVNI-----APHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH-cCCEEEEEecC-----cCCHHHHHHHHHHHHHHHh
Confidence 46778888999999993 23466889999999988 58999988752 2223334445444432234
Q ss_pred CCceEEEEcC
Q psy13907 155 AQLVAVGVNC 164 (698)
Q Consensus 155 ~~~~aIGiNC 164 (698)
.++|+|-+.-
T Consensus 88 ~gvDgvIV~d 97 (443)
T PRK15452 88 MKPDALIMSD 97 (443)
T ss_pred CCCCEEEEcC
Confidence 6889887765
No 139
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=65.63 E-value=99 Score=31.47 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHH----HHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHH
Q psy13907 413 TPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAM----VLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVY 488 (698)
Q Consensus 413 t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eak----aa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~ 488 (698)
++.++...| .+.|+|-|.+=+.....+-. ..+..+.+..++|+|+..-+. ++.++-..+
T Consensus 29 dp~~~a~~~-------~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~---------~~ed~~~~~- 91 (230)
T TIGR00007 29 DPVEAAKKW-------EEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIR---------SLEDVEKLL- 91 (230)
T ss_pred CHHHHHHHH-------HHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcC---------CHHHHHHHH-
Confidence 455555554 45789888775555543211 234444444578998765433 355554444
Q ss_pred HhCCCCceEEEEcC---CChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe-EE-
Q psy13907 489 AKNPAQLVAVGVNC---LAPHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK-YV- 562 (698)
Q Consensus 489 ~~~~~~~~~iGlNC---~~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~-ii- 562 (698)
+ .+...+-+++ ..|+.+..+.+.+. ....+++.-..|... ..| |.. .+.....+.++.+.+.|+. ++
T Consensus 92 ~---~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~--~~g-~~~-~~~~~~~~~~~~~~~~g~~~ii~ 164 (230)
T TIGR00007 92 D---LGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVA--VKG-WLE-KSEVSLEELAKRLEELGLEGIIY 164 (230)
T ss_pred H---cCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEE--EcC-Ccc-cCCCCHHHHHHHHHhCCCCEEEE
Confidence 2 3444555666 35777777877775 334443333333211 122 421 1222344566667777754 22
Q ss_pred e------ecCCCchHHHHHHHhc
Q psy13907 563 G------GCCRTNADDMKNVNQV 579 (698)
Q Consensus 563 G------GCCGTtP~hI~al~~~ 579 (698)
. -.-|.+-+.|+.+++.
T Consensus 165 ~~~~~~g~~~g~~~~~i~~i~~~ 187 (230)
T TIGR00007 165 TDISRDGTLSGPNFELTKELVKA 187 (230)
T ss_pred EeecCCCCcCCCCHHHHHHHHHh
Confidence 2 2223344556665554
No 140
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=65.63 E-value=80 Score=34.67 Aligned_cols=102 Identities=20% Similarity=0.086 Sum_probs=60.9
Q ss_pred HHHHHhCCCCEEEEecCcCH---------------------------HHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCC
Q psy13907 87 IEALIQGGIDLLAIETLPAQ---------------------------EEAMVLAELIKEY-PGLKAWISFSCKDEKHTCH 138 (698)
Q Consensus 87 i~~l~~~GVD~il~ETi~~l---------------------------~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~ 138 (698)
++.+.+.|+.++..=|+... ..+...++-+++. .++|+++|+..... +..
T Consensus 75 ~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~--~~~ 152 (344)
T PRK05286 75 IDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKD--TPL 152 (344)
T ss_pred HHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCC--CCc
Confidence 34455678888877777531 1133344444432 46899999965432 223
Q ss_pred CCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 139 GDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 139 G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
+.+.++.++.+.... ..+|++-+|++.|..- ......-|..+.++++++++.
T Consensus 153 ~~~~~d~~~~~~~~~-~~ad~lelN~scP~~~-------------------g~~~~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 153 EDAVDDYLICLEKLY-PYADYFTVNISSPNTP-------------------GLRDLQYGEALDELLAALKEA 204 (344)
T ss_pred ccCHHHHHHHHHHHH-hhCCEEEEEccCCCCC-------------------CcccccCHHHHHHHHHHHHHH
Confidence 445666665553322 3589999999886421 011134778888888888875
No 141
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=64.81 E-value=1.4e+02 Score=31.79 Aligned_cols=130 Identities=8% Similarity=0.020 Sum_probs=81.3
Q ss_pred HHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCC
Q psy13907 325 VRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEY 404 (698)
Q Consensus 325 l~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey 404 (698)
+++|++.|.-. +.+|.......++++.+++.+.....+++||+.- ..|..++ -++
T Consensus 84 ~~~g~~~v~i~-~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g--------------~~v~~~~--ed~-------- 138 (279)
T cd07947 84 KEMGLKETGIL-MSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHG--------------IKPRCHL--EDI-------- 138 (279)
T ss_pred HHcCcCEEEEE-EcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCC--------------CeEEEEE--Ecc--------
Confidence 47799866543 4566665655568877777777777776665531 2344443 110
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHHhCCCC-EE-EecccCCH---------HHHHHHHHHHHhcCCCe-EEEEEEecCC
Q psy13907 405 RGDYIDSTTP-QELIDYHRPRIEALIQGGID-LL-AIETLPAQ---------EEAMVLAELIKEYPGLK-AWISFSCKDE 471 (698)
Q Consensus 405 ~g~y~~~~t~-del~~~y~~qi~~L~~~GvD-ll-l~ETi~~~---------~Eakaa~~a~~~~~~~P-v~iS~t~~~~ 471 (698)
.+ .++ +...++-.+.++...+.|+| .| +.-|+--. .+....+.++++..+.| +.+++-+.+
T Consensus 139 ----~r-~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn- 212 (279)
T cd07947 139 ----TR-ADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHN- 212 (279)
T ss_pred ----cC-CCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecC-
Confidence 11 223 33444555555556679999 45 77787732 57788888888644454 557888877
Q ss_pred CccCCCCcHHHHHHHHH
Q psy13907 472 KHTCHGDKFGLIARDVY 488 (698)
Q Consensus 472 g~l~~G~~l~~~v~~~~ 488 (698)
..|..+..++.++.
T Consensus 213 ---~~Gla~AN~laA~~ 226 (279)
T cd07947 213 ---DFYKAVANAVAAWL 226 (279)
T ss_pred ---CCChHHHHHHHHHH
Confidence 57887887777774
No 142
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=64.60 E-value=42 Score=34.10 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCEEEEecC----cCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceE
Q psy13907 84 RPRIEALIQGGIDLLAIETL----PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 159 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi----~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~a 159 (698)
.++++.+.+.|+|++++-.- |+..+++.+++.+++..++|+++.. .+.+++.... ..+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v-----------~t~ee~~~a~----~~G~d~ 142 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC-----------STLEEGLAAQ----KLGFDF 142 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC-----------CCHHHHHHHH----HcCCCE
Confidence 45788888999998876432 2225667777777763367766532 2455654322 368899
Q ss_pred EEEcC
Q psy13907 160 VGVNC 164 (698)
Q Consensus 160 IGiNC 164 (698)
|++|-
T Consensus 143 i~~~~ 147 (221)
T PRK01130 143 IGTTL 147 (221)
T ss_pred EEcCC
Confidence 98863
No 143
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=63.82 E-value=95 Score=32.82 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=50.9
Q ss_pred CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCC------------hhhhHHHHHHhc--CCCCEEE
Q psy13907 458 PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLA------------PHYVESLLTSAG--RDVPLLC 523 (698)
Q Consensus 458 ~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~------------p~~~~~~l~~l~--~~~pl~~ 523 (698)
.+.|+++|+...+ -+.+.++++.+.+ .++++|-+||.. ++.+..+++.++ .++|+++
T Consensus 97 ~~~pvi~si~g~~------~~~~~~~a~~~~~---~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~v 167 (289)
T cd02810 97 PGQPLIASVGGSS------KEDYVELARKIER---AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLV 167 (289)
T ss_pred CCCeEEEEeccCC------HHHHHHHHHHHHH---hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEE
Confidence 4678888885432 1234455665543 356778888732 345566677666 4788887
Q ss_pred ecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEe
Q psy13907 524 CPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVG 563 (698)
Q Consensus 524 yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiG 563 (698)
.-+.+ .+.+++.+.++...+.|+..|-
T Consensus 168 Kl~~~-------------~~~~~~~~~a~~l~~~Gad~i~ 194 (289)
T cd02810 168 KLSPY-------------FDLEDIVELAKAAERAGADGLT 194 (289)
T ss_pred EeCCC-------------CCHHHHHHHHHHHHHcCCCEEE
Confidence 75542 1344666777777777865553
No 144
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=63.70 E-value=1.4e+02 Score=31.07 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=52.4
Q ss_pred EEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCCh--HHHHH
Q psy13907 125 WISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKP--IQLLS 202 (698)
Q Consensus 125 ~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP--~~~~~ 202 (698)
|..|+.=|..++ ....+.++.+. ..|-|+|.|--|. |- +.|.+
T Consensus 16 ~~H~tliDP~k~---~~~~ei~~~~~---~~GTDaImIGGS~-----------------------------gvt~~~~~~ 60 (240)
T COG1646 16 KRHLTLIDPDKT---EEADEIAEAAA---EAGTDAIMIGGSD-----------------------------GVTEENVDN 60 (240)
T ss_pred ceEEEEeCcccc---cccHHHHHHHH---HcCCCEEEECCcc-----------------------------cccHHHHHH
Confidence 788886544432 33444444443 2688999998887 43 34778
Q ss_pred HHHHHHHcCCCCCCCcCCCcCccEEeecC--CCCceeecCeeeeeeec
Q psy13907 203 IELELAAAGKMPSGTTQIPFEAPLKAKPN--RSLFETYHGVFVNVQYN 248 (698)
Q Consensus 203 ~~~~l~~~~~~~~~~~~~~~~~~~~~~pn--ag~p~~~~~~~~~~~~~ 248 (698)
+++.+++. + ++|+...|. .|+-...|.-|+=...+
T Consensus 61 ~v~~ik~~------~-----~lPvilfP~~~~~is~~aDavff~svLN 97 (240)
T COG1646 61 VVEAIKER------T-----DLPVILFPGSPSGISPYADAVFFPSVLN 97 (240)
T ss_pred HHHHHHhh------c-----CCCEEEecCChhccCccCCeEEEEEEec
Confidence 88888755 4 899999998 56666677776655555
No 145
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=63.66 E-value=9.2 Score=40.79 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 83 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
=-+|+++..++|+|.|..|-+.+.+|++...++++ .|+.+.++-. |++ ++-. ++.+. ..|+.-|-.
T Consensus 168 AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~----~pl~~N~t~~--g~t----p~~~-~~~L~---~~Gv~~V~~ 233 (289)
T COG2513 168 AIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP----VPLPANITEF--GKT----PLLT-VAELA---ELGVKRVSY 233 (289)
T ss_pred HHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC----CCeeeEeecc--CCC----CCcC-HHHHH---hcCceEEEE
Confidence 34588999999999999999999999998888765 5677666532 221 1111 13332 267776666
Q ss_pred cCCChhhhHHH
Q psy13907 163 NCLAPHYVESL 173 (698)
Q Consensus 163 NC~~p~~i~~~ 173 (698)
-.+.......+
T Consensus 234 ~~~~~raa~~a 244 (289)
T COG2513 234 GLTAFRAALKA 244 (289)
T ss_pred CcHHHHHHHHH
Confidence 66554333333
No 146
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=63.40 E-value=1.4e+02 Score=33.62 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCc---CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCC
Q psy13907 80 IDYHRPRIEALIQGGIDLLAIETLP---AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ 156 (698)
Q Consensus 80 ~~~~~~qi~~l~~~GVD~il~ETi~---~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~ 156 (698)
.++|.+.++.|.+.|||-|.|--|. +..++-..++++|+..++|+-+.-.+ . +|-+....+.++. .|
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~--T----sG~a~m~ylkAvE----AG 224 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHA--T----SGMAEMTYLKAVE----AG 224 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEeccc--c----cchHHHHHHHHHH----hC
Confidence 3789999999999999999999876 56778888888887555665544322 2 4665555444443 57
Q ss_pred ceEEEEcCCC
Q psy13907 157 LVAVGVNCLA 166 (698)
Q Consensus 157 ~~aIGiNC~~ 166 (698)
+|.|-.-++.
T Consensus 225 vD~iDTAisp 234 (472)
T COG5016 225 VDGIDTAISP 234 (472)
T ss_pred cchhhhhhcc
Confidence 7777666654
No 147
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=63.35 E-value=1.9e+02 Score=31.70 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=88.1
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---------------ccCCHHHHHHHHHHHHhcCCCe
Q psy13907 397 FLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---------------TLPAQEEAMVLAELIKEYPGLK 461 (698)
Q Consensus 397 ~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E---------------Ti~~~~Eakaa~~a~~~~~~~P 461 (698)
+|.||.-..+ -.++.++.... ++.|.++|||.|=+- .+++...++++...++ +..
T Consensus 9 TLRDG~q~~~---~~f~~~~~~~i----a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~---~~~ 78 (333)
T TIGR03217 9 TLRDGMHAIR---HQFTIEQVRAI----AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK---RAK 78 (333)
T ss_pred CCCCCCcCCC---CcCCHHHHHHH----HHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC---CCE
Confidence 4566642222 23677766654 556888999998431 1234444444444332 222
Q ss_pred EEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCccccc
Q psy13907 462 AWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMN 540 (698)
Q Consensus 462 v~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~ 540 (698)
+ +.-+.. |+ | +..+ ++...+ .+....-|...|...+.+.++++.++ ....+.+.+=. . +
T Consensus 79 ~--~~ll~p-g~---~-~~~d-l~~a~~-~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~------s---~-- 138 (333)
T TIGR03217 79 V--AVLLLP-GI---G-TVHD-LKAAYD-AGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMM------S---H-- 138 (333)
T ss_pred E--EEEecc-Cc---c-CHHH-HHHHHH-CCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEc------c---c--
Confidence 2 211211 11 1 1222 333322 13344557788887777888887776 33444333311 1 1
Q ss_pred CCChhhHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHhccccC
Q psy13907 541 KDSVPSVDTYVPRWLDTGVKYVGGCCR----TNADDMKNVNQVPVKF 583 (698)
Q Consensus 541 ~~~p~~~a~~~~~~~~~G~~iiGGCCG----TtP~hI~al~~~v~~~ 583 (698)
..+|+.++++++...+.|+..|. .|- .+|++++.+-++++..
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~-i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVY-IVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEE-EccCCCCCCHHHHHHHHHHHHHh
Confidence 34788999999999999988774 332 4899999988888754
No 148
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=63.33 E-value=42 Score=36.49 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=37.5
Q ss_pred hCCCCEEEEecCcCHHHHHH---HHHHHHh-cCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCCh
Q psy13907 92 QGGIDLLAIETLPAQEEAMV---LAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAP 167 (698)
Q Consensus 92 ~~GVD~il~ETi~~l~Ea~a---a~~a~~~-~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p 167 (698)
+.|+|+..-|.++.-..... ....... ....|+.+++ -|.++++.++.+......++++|-+||+.|
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl---------~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP 101 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI---------AGSDPKEMADAARINVESGAQIIDINMGCP 101 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE---------eCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45789988897776432111 1111110 0125665565 355555554443222236899999999987
Q ss_pred h
Q psy13907 168 H 168 (698)
Q Consensus 168 ~ 168 (698)
.
T Consensus 102 ~ 102 (321)
T PRK10415 102 A 102 (321)
T ss_pred H
Confidence 5
No 149
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=63.04 E-value=17 Score=39.16 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEE
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFS 129 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft 129 (698)
.--+|.+++.++|+|.+.+|.+.+.+|++.+.+.+ ++|+++.++
T Consensus 167 eAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~~n~~ 210 (292)
T PRK11320 167 AAIERAQAYVEAGADMIFPEAMTELEMYRRFADAV----KVPILANIT 210 (292)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc----CCCEEEEec
Confidence 34568999999999999999999999998877654 579988776
No 150
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=62.86 E-value=1.7e+02 Score=31.12 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=60.9
Q ss_pred CeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 46 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 46 ~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
+.+|.++| |++. |. +.+ +.++.-.+.+.++|+|.+=+|-= .|....++++.+ .++||+
T Consensus 76 ~~~vv~Dm-Pf~s-----------y~---~~e---~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~-~gIpV~ 133 (263)
T TIGR00222 76 NCLIVTDL-PFMS-----------YA---TPE---QALKNAARVMQETGANAVKLEGG---EWLVETVQMLTE-RGVPVV 133 (263)
T ss_pred CceEEeCC-CcCC-----------CC---CHH---HHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHH-CCCCEE
Confidence 57888888 4443 21 123 33444445555689999999963 445555667766 689999
Q ss_pred -------EEEEEcCCCccCCCCCHH---HHHHHHHhhCCCCceEEEEcCCCh
Q psy13907 126 -------ISFSCKDEKHTCHGDKFG---LIARDVYAKNPAQLVAVGVNCLAP 167 (698)
Q Consensus 126 -------iSft~~~~g~l~~G~~~~---~~~~~l~~~~~~~~~aIGiNC~~p 167 (698)
.+... ..|...-|.+-+ ++++........|+++|=+-|...
T Consensus 134 gHiGltPq~a~~-~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~ 184 (263)
T TIGR00222 134 GHLGLTPQSVNI-LGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLECVPV 184 (263)
T ss_pred EecCCCceeEee-cCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 44433 233444466644 444443333457999999999873
No 151
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=62.78 E-value=27 Score=38.12 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=64.9
Q ss_pred CC-CEEEEecCcCHHHHHHHHHHHHhc----CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChh
Q psy13907 94 GI-DLLAIETLPAQEEAMVLAELIKEY----PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPH 168 (698)
Q Consensus 94 GV-D~il~ETi~~l~Ea~aa~~a~~~~----~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~ 168 (698)
|+ |++.-|-+.+-.-+..--+-.+.. .+.|+.+++ -|.+++...+........+++.|=+||..|.
T Consensus 34 ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl---------~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~ 104 (323)
T COG0042 34 GAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQL---------GGSDPELLAEAAKIAEELGADIIDLNCGCPS 104 (323)
T ss_pred CCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEe---------cCCCHHHHHHHHHHHHhcCCCEEeeeCCCCh
Confidence 56 999999887664433222111111 145666655 3555544444332223456999999998864
Q ss_pred hhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCce
Q psy13907 169 YVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFE 236 (698)
Q Consensus 169 ~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~ 236 (698)
. +..+.... ..+-.-|+.+.++|+++.++ . + +.|++|+=--|...
T Consensus 105 ~-----~V~~~g~G--------a~Ll~~p~lv~~iv~a~~~a------v---~-~iPVTVKiRlG~d~ 149 (323)
T COG0042 105 P-----KVVKGGAG--------AALLKNPELLAEIVKAMVEA------V---G-DIPVTVKIRLGWDD 149 (323)
T ss_pred H-----HhcCCCcc--------hhhcCCHHHHHHHHHHHHHh------h---C-CCCeEEEEecccCc
Confidence 3 11111110 11244799999999999887 3 1 37888887777644
No 152
>PRK06852 aldolase; Validated
Probab=62.74 E-value=81 Score=34.19 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHH-hcCCCeEEEEEEecCCCccC-----CCC-cHHHHHHHHHHhC---C
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIK-EYPGLKAWISFSCKDEKHTC-----HGD-KFGLIARDVYAKN---P 492 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~-~~~~~Pv~iS~t~~~~g~l~-----~G~-~l~~~v~~~~~~~---~ 492 (698)
..++.+.++|+|.++.= +..++... .+.+.|+++-++-.. .+. +.. .+...++...... .
T Consensus 63 ~~i~~~~~~g~dav~~~--------~G~l~~~~~~~~~~~lIlkl~~~t--~l~~~~~~~p~~~l~~sVeeAvrlG~~~~ 132 (304)
T PRK06852 63 HLFRIASKAKIGVFATQ--------LGLIARYGMDYPDVPYLVKLNSKT--NLVKTSQRDPLSRQLLDVEQVVEFKENSG 132 (304)
T ss_pred HHHHHHHhcCCCEEEeC--------HHHHHhhccccCCCcEEEEECCCC--CcCCcccCCccccceecHHHHHhcCCccC
Confidence 35666778899999862 55554433 345688887775211 111 110 1111122222211 1
Q ss_pred CCceEEEEcC-CChhhhHHHHHHhc--------CCCCEE--EecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeE
Q psy13907 493 AQLVAVGVNC-LAPHYVESLLTSAG--------RDVPLL--CCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKY 561 (698)
Q Consensus 493 ~~~~~iGlNC-~~p~~~~~~l~~l~--------~~~pl~--~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~i 561 (698)
.+.++|++.. .|.+.-...|+.+. ...|++ +||=..... + ..+|+.++..++--++.|+.|
T Consensus 133 ~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~---~-----~~~~~~ia~aaRiaaELGADI 204 (304)
T PRK06852 133 LNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVK---D-----EKDPHLIAGAAGVAACLGADF 204 (304)
T ss_pred CCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccC---C-----CccHHHHHHHHHHHHHHcCCE
Confidence 3478999998 66544344444432 578876 577643221 1 124566777777777888887
Q ss_pred Ee
Q psy13907 562 VG 563 (698)
Q Consensus 562 iG 563 (698)
|=
T Consensus 205 VK 206 (304)
T PRK06852 205 VK 206 (304)
T ss_pred EE
Confidence 75
No 153
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=62.64 E-value=37 Score=32.63 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHH-HH----HHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCC
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEE-AM----VLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPA 155 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~E-a~----aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~ 155 (698)
+.+.+.++.+.+.|+|++.+++...-.. .. ..+..+++..+.|+++++.+.+.. ......+..+. ..
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~---~~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA-----AAVDIAAAAAR---AA 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch-----hhhhHHHHHHH---Hc
Confidence 4566677778889999999998652221 10 113333333578999999765432 11221122332 36
Q ss_pred CceEEEEcCCC
Q psy13907 156 QLVAVGVNCLA 166 (698)
Q Consensus 156 ~~~aIGiNC~~ 166 (698)
++++|-+|+..
T Consensus 84 g~d~v~l~~~~ 94 (200)
T cd04722 84 GADGVEIHGAV 94 (200)
T ss_pred CCCEEEEeccC
Confidence 78999999887
No 154
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=62.38 E-value=1.9e+02 Score=31.22 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=35.2
Q ss_pred CCChhhHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHhccccC
Q psy13907 541 KDSVPSVDTYVPRWLDTGVKYVGGCCR----TNADDMKNVNQVPVKF 583 (698)
Q Consensus 541 ~~~p~~~a~~~~~~~~~G~~iiGGCCG----TtP~hI~al~~~v~~~ 583 (698)
..|+++..+.+++.++.|.-|++--|| |.+++|+++.++++.+
T Consensus 290 ~gt~eeI~~~v~~~l~~g~~Il~~gcgi~~~tp~enl~a~v~a~~~~ 336 (339)
T PRK06252 290 NGTPEKVKAEAKKCLEDGVDILAPGCGIAPKTPLENIKAMVEARKEY 336 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 468899999999999988667666666 5689999999998864
No 155
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=62.27 E-value=45 Score=34.67 Aligned_cols=78 Identities=5% Similarity=-0.089 Sum_probs=46.9
Q ss_pred CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccc-cCCChHH
Q psy13907 121 GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTL-ISRKPIQ 199 (698)
Q Consensus 121 ~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~-~~~gP~~ 199 (698)
+.|+++|+- |.++++..+.+... ..++++|-+||+.|..- +.+. ..|. +-.-|+.
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~------v~~~--------g~G~~Ll~dp~~ 122 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTI-AEHADIIEINAHCRQPE------ITEI--------GIGQELLKNKEL 122 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHH-hcCCCEEEEECCCCcHH------HcCC--------CCchhhcCCHHH
Confidence 568888884 44566555544322 24789999999886420 0000 0111 2347888
Q ss_pred HHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCC
Q psy13907 200 LLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSL 234 (698)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~ 234 (698)
+.++++.+... +.||+++=..|.
T Consensus 123 l~~iv~av~~~------------~~PVsvKiR~~~ 145 (231)
T TIGR00736 123 LKEFLTKMKEL------------NKPIFVKIRGNC 145 (231)
T ss_pred HHHHHHHHHcC------------CCcEEEEeCCCC
Confidence 88888888743 567777655554
No 156
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=61.91 E-value=2.3e+02 Score=30.38 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCC
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGD 478 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~ 478 (698)
..++.+.+.|+|++-++...|+.+++.. + +-.+.+...+.....+..|+
T Consensus 234 ~~~~~l~~~~~d~~~~d~~~dl~~~~~~------~-g~~~~i~G~id~~~~l~~gt 282 (330)
T cd03465 234 PILELMADLGADVFSIDVTVDLAEAKKK------V-GDKACLMGNLDPIDVLLNGS 282 (330)
T ss_pred hHHHHHHHhCCCeEeecccCCHHHHHHH------h-CCceEEEeCcChHHhhcCCC
Confidence 4466678889999999977777665432 2 22345556664433455553
No 157
>PLN02591 tryptophan synthase
Probab=61.91 E-value=2.1e+02 Score=30.06 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHhcchhhc
Q psy13907 314 RQAVIDTHRDYVRAGCDIVTT 334 (698)
Q Consensus 314 Pe~V~~iH~~yl~AGAdII~T 334 (698)
++.-.++-+.+.++|||+|+-
T Consensus 15 ~e~~~~~~~~l~~~Gad~iEl 35 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIEL 35 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEE
Confidence 345677889999999999974
No 158
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=61.87 E-value=1.6e+02 Score=32.50 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=64.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCC-cCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHH
Q psy13907 10 LGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGS-YGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIE 88 (698)
Q Consensus 10 ~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP-~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~ 88 (698)
.+.+.+++.+.....+++|++.- ..|.+.+.- +|. +|.+ ..+. ++..+.++
T Consensus 153 ~~~t~~e~l~~~~~~v~~Ak~~G--------------l~v~~~is~~fg~------p~~~----r~~~----~~l~~~~~ 204 (347)
T PLN02746 153 INCSIEESLVRYREVALAAKKHS--------------IPVRGYVSCVVGC------PIEG----PVPP----SKVAYVAK 204 (347)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcC--------------CeEEEEEEeeecC------CccC----CCCH----HHHHHHHH
Confidence 46666666666777777776541 234333322 111 1222 2333 35555666
Q ss_pred HHHhCCCCEEEEe-cCc--CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 89 ALIQGGIDLLAIE-TLP--AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 89 ~l~~~GVD~il~E-Ti~--~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
.+.+.|+|-|.+= |+- ...++...++.+++..+. .-+.|.+.++ .|.-+..++..+.
T Consensus 205 ~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~-~~i~~H~Hnd----~GlA~AN~lAA~~ 264 (347)
T PLN02746 205 ELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPV-DKLAVHFHDT----YGQALANILVSLQ 264 (347)
T ss_pred HHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCC-CeEEEEECCC----CChHHHHHHHHHH
Confidence 6778899988664 543 677888889888863221 2357777766 4667777777664
No 159
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.63 E-value=2.9e+02 Score=31.89 Aligned_cols=99 Identities=15% Similarity=0.320 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCe--EEEEEEecCCCccCCCCcHH---HHHHHHH
Q psy13907 415 QELIDYHRPRIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLK--AWISFSCKDEKHTCHGDKFG---LIARDVY 488 (698)
Q Consensus 415 del~~~y~~qi~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~P--v~iS~t~~~~g~l~~G~~l~---~~v~~~~ 488 (698)
|++++.| ++...+.|+|++ ++--..+..+++.+++++++. +.- +.|+.|... -.++. +.++.+.
T Consensus 104 ddvv~~f---v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~-G~~~~~~i~yt~sp------~~t~~y~~~~a~~l~ 173 (468)
T PRK12581 104 DDIVDKF---ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKT-GKEAQLCIAYTTSP------VHTLNYYLSLVKELV 173 (468)
T ss_pred chHHHHH---HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHc-CCEEEEEEEEEeCC------cCcHHHHHHHHHHHH
Confidence 5555555 555678999998 556778899999999999974 433 455555432 22333 4455443
Q ss_pred HhCCCCceEEEEcC----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 489 AKNPAQLVAVGVNC----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 489 ~~~~~~~~~iGlNC----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
+ .++..|.+-= ..|..+..+++.+. .+.|+.++-.
T Consensus 174 ~---~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~H 214 (468)
T PRK12581 174 E---MGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTH 214 (468)
T ss_pred H---cCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeC
Confidence 3 4455555533 36888999888886 5677776643
No 160
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=61.53 E-value=26 Score=38.72 Aligned_cols=60 Identities=23% Similarity=0.425 Sum_probs=42.5
Q ss_pred CCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc-cCCHHHHHHHHHHHHh-cCC
Q psy13907 382 SRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIET-LPAQEEAMVLAELIKE-YPG 459 (698)
Q Consensus 382 ~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ET-i~~~~Eakaa~~a~~~-~~~ 459 (698)
.++.+|+.++||.. .+.++++.|+++|+|+|.+-+ -.+.......++.+++ +++
T Consensus 94 ~~~l~V~aavg~~~------------------------~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRD------------------------DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESST------------------------CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCH------------------------HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 45689999999952 157899999999999999974 3455555556666664 566
Q ss_pred CeEEEE
Q psy13907 460 LKAWIS 465 (698)
Q Consensus 460 ~Pv~iS 465 (698)
+||++-
T Consensus 150 ~~viaG 155 (352)
T PF00478_consen 150 VPVIAG 155 (352)
T ss_dssp SEEEEE
T ss_pred ceEEec
Confidence 887743
No 161
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=60.95 E-value=1e+02 Score=34.61 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCCEEEEec-C--------------cCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHH
Q psy13907 82 YHRPRIEALIQGGIDLLAIET-L--------------PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIA 146 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ET-i--------------~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~ 146 (698)
.|.+.++.+.+.|+|.|=+=- . .+.+-++.+++++++..++|+|+-++- +-+++.+.+
T Consensus 128 ~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP-------n~t~i~~ia 200 (385)
T PLN02495 128 AWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP-------NITDITQPA 200 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC-------ChhhHHHHH
Confidence 444555566678999886521 1 345567778888888678999999973 223477777
Q ss_pred HHHHhhCCCCceEE-EEcCC
Q psy13907 147 RDVYAKNPAQLVAV-GVNCL 165 (698)
Q Consensus 147 ~~l~~~~~~~~~aI-GiNC~ 165 (698)
+.+.. .++++| .+|=.
T Consensus 201 ~aa~~---~Gadgi~liNT~ 217 (385)
T PLN02495 201 RVALK---SGCEGVAAINTI 217 (385)
T ss_pred HHHHH---hCCCEEEEeccc
Confidence 76642 577774 45643
No 162
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=60.82 E-value=89 Score=33.79 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=60.9
Q ss_pred hCCCCEEEecccCCHHHHHH---HHHHHHh-cCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCCh
Q psy13907 430 QGGIDLLAIETLPAQEEAMV---LAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAP 505 (698)
Q Consensus 430 ~~GvDlll~ETi~~~~Eaka---a~~a~~~-~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p 505 (698)
+.|+|++.-|.+..-.=... ....+.. ..+.|+.+++.-. +.+.+.++++.+.+ .+.++|-+||..|
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~------~~~~~~~aa~~~~~---~G~d~IelN~gcP 99 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS------DPDTMAEAAKINEE---LGADIIDINMGCP 99 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC------CHHHHHHHHHHHHh---CCCCEEEEECCCC
Confidence 45789999888865421111 1111121 1257888888532 23444556655532 5678999999433
Q ss_pred h-----------------hhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeE
Q psy13907 506 H-----------------YVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKY 561 (698)
Q Consensus 506 ~-----------------~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~i 561 (698)
. .+..+++.+. .+.|++++-..|.. .+.....+.++.+.+.|+..
T Consensus 100 ~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~-----------~~~~~~~~~a~~l~~~G~d~ 163 (319)
T TIGR00737 100 VPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD-----------DAHINAVEAARIAEDAGAQA 163 (319)
T ss_pred HHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC-----------CCcchHHHHHHHHHHhCCCE
Confidence 2 2234444444 56899888665421 11123445555566667543
No 163
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=60.47 E-value=2e+02 Score=29.37 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=67.8
Q ss_pred HHHHHHHhCCCCEEEecc-cCCHH------HHHHHHHHHHhcCCCeEEEEEEecCCCccC---CCCcHHHHHHHHHHhCC
Q psy13907 423 PRIEALIQGGIDLLAIET-LPAQE------EAMVLAELIKEYPGLKAWISFSCKDEKHTC---HGDKFGLIARDVYAKNP 492 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ET-i~~~~------Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~---~G~~l~~~v~~~~~~~~ 492 (698)
.+++..++.|+|.+.+.- +.+.. +++.+..++++ .++|++|.... +...+. +...+..+++...+
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~-~g~~~iie~~~-~g~~~~~~~~~~~i~~~~~~a~~--- 154 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHK-YGLPLIAWMYP-RGPAVKNEKDPDLIAYAARIGAE--- 154 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHH-cCCCEEEEEec-cCCcccCccCHHHHHHHHHHHHH---
Confidence 356677888998764432 22322 55556666665 37898885533 222221 11233333333322
Q ss_pred CCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe
Q psy13907 493 AQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK 560 (698)
Q Consensus 493 ~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ 560 (698)
.+++.|+++. .+++.++.+.+.. ..|+.+- .|.. ..+++++.+.+++.++.|++
T Consensus 155 ~GaD~Ik~~~~~~~~~~~~i~~~~--~~pvv~~--GG~~----------~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 155 LGADIVKTKYTGDAESFKEVVEGC--PVPVVIA--GGPK----------KDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HCCCEEEecCCCCHHHHHHHHhcC--CCCEEEe--CCCC----------CCCHHHHHHHHHHHHHcCCc
Confidence 5778899987 4566666665544 5676443 2211 12566777888888888866
No 164
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=60.41 E-value=1.4e+02 Score=32.30 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCC--cHHHHHHHHHHhCCCCceEEEE
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGD--KFGLIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~--~l~~~v~~~~~~~~~~~~~iGl 500 (698)
..++.+.+.|+|.+-++.-.|+.+++..+ .+ -+.+...++....+..|+ .+.+.++.+.+ .+...+..
T Consensus 244 ~~l~~~~~~g~d~~~~d~~~dl~~~~~~~------g~-~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~---~g~~Il~~ 313 (339)
T PRK06252 244 SILEEMADCGFDGISIDEKVDVKTAKENV------GD-RAALIGNVSTSFTLLNGTPEKVKAEAKKCLE---DGVDILAP 313 (339)
T ss_pred HHHHHHHhcCCCeeccCCCCCHHHHHHHh------CC-CeEEEeccCcHHHhcCCCHHHHHHHHHHHHH---cCCCEEcC
Confidence 34566777899999998888887765332 12 134456564323445554 23333333332 22234556
Q ss_pred cC
Q psy13907 501 NC 502 (698)
Q Consensus 501 NC 502 (698)
.|
T Consensus 314 gc 315 (339)
T PRK06252 314 GC 315 (339)
T ss_pred CC
Confidence 66
No 165
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.24 E-value=1.7e+02 Score=29.91 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh-cCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEE
Q psy13907 421 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVG 499 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~-~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iG 499 (698)
-.+.+++|.++|+|++ |--.+..++..+++.+++ ++++ ++-..|+.+ ..+ ++...+ .+...+-
T Consensus 29 a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p~~-~IGAGTVl~---------~~~-a~~a~~---aGA~Fiv 92 (212)
T PRK05718 29 AVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEVPEA-LIGAGTVLN---------PEQ-LAQAIE---AGAQFIV 92 (212)
T ss_pred HHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHCCCC-EEEEeeccC---------HHH-HHHHHH---cCCCEEE
Confidence 3467888999999976 422455577777777764 4332 233445543 123 222322 3434444
Q ss_pred EcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEE----eecCCCchHHHHH
Q psy13907 500 VNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV----GGCCRTNADDMKN 575 (698)
Q Consensus 500 lNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii----GGCCGTtP~hI~a 575 (698)
.-++.++.+....+ ...+ ..| | -.||.+ +.++.+.|+.++ ++.-| .|.+|++
T Consensus 93 sP~~~~~vi~~a~~---~~i~--~iP----------G----~~TptE----i~~a~~~Ga~~vKlFPa~~~g-g~~~lk~ 148 (212)
T PRK05718 93 SPGLTPPLLKAAQE---GPIP--LIP----------G----VSTPSE----LMLGMELGLRTFKFFPAEASG-GVKMLKA 148 (212)
T ss_pred CCCCCHHHHHHHHH---cCCC--EeC----------C----CCCHHH----HHHHHHCCCCEEEEccchhcc-CHHHHHH
Confidence 44555544444322 1222 222 3 125554 455778886665 34443 7999998
Q ss_pred HHhccc
Q psy13907 576 VNQVPV 581 (698)
Q Consensus 576 l~~~v~ 581 (698)
|+.-+.
T Consensus 149 l~~p~p 154 (212)
T PRK05718 149 LAGPFP 154 (212)
T ss_pred HhccCC
Confidence 887763
No 166
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.07 E-value=1.1e+02 Score=33.44 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCC--CEEEEe-cCcCHHHHHHHHHHHHhc-CCCeEEEE-EEEcCCCccCCCCCHHHHHHHHHhhCCCCce
Q psy13907 84 RPRIEALIQGGI--DLLAIE-TLPAQEEAMVLAELIKEY-PGLKAWIS-FSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 158 (698)
Q Consensus 84 ~~qi~~l~~~GV--D~il~E-Ti~~l~Ea~aa~~a~~~~-~~~Pv~iS-ft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~ 158 (698)
.++++.|+++|+ |+|.+- |-++...+..+++.+++. ++.|+++. .+ +.+++...+ ..|+|
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----------t~e~a~~l~----~aGad 163 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----------TPEAVRELE----NAGAD 163 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----------CHHHHHHHH----HcCcC
Confidence 478999999965 999996 556677777778888764 56888863 32 455554433 26788
Q ss_pred EE------EEcCCC
Q psy13907 159 AV------GVNCLA 166 (698)
Q Consensus 159 aI------GiNC~~ 166 (698)
+| |-||..
T Consensus 164 ~i~vg~~~G~~~~t 177 (326)
T PRK05458 164 ATKVGIGPGKVCIT 177 (326)
T ss_pred EEEECCCCCccccc
Confidence 86 667755
No 167
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=59.89 E-value=1.1e+02 Score=32.42 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHH
Q psy13907 411 STTPQELIDYHRPRIEALIQG-GIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFG 481 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~-GvDlll~E-T-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~ 481 (698)
.+++ +.++..++.+++. |||.|++- | .-+..|-+.+++++.+. .+.|+++... +.++.
T Consensus 17 ~iD~----~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~---------~~~~~ 83 (288)
T cd00954 17 EINE----DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG---------SLNLK 83 (288)
T ss_pred CCCH----HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC---------CCCHH
Confidence 4565 4466777788889 99998653 2 23466666677665542 3468877653 23466
Q ss_pred HHHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc--C-CCCEEEecCC
Q psy13907 482 LIARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG--R-DVPLLCCPNS 527 (698)
Q Consensus 482 ~~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~--~-~~pl~~yPNa 527 (698)
++++........+++++.+-- ...+.+..+.+.+. . +.|+++|-|-
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 84 ESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 677665433335566666544 23466777777775 6 7999999664
No 168
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=59.83 E-value=1.5e+02 Score=36.38 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-----cCcCHHHHHHHHHHHHhc----CCCeEEEEEEEcCCCccCCCCCHHHHH
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEY----PGLKAWISFSCKDEKHTCHGDKFGLIA 146 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E-----Ti~~l~Ea~aa~~a~~~~----~~~Pv~iSft~~~~g~l~~G~~~~~~~ 146 (698)
.+++...|.+.++.|.+.||+.|=+. |=++..++.++.++.+.+ .+.+++++..|. ++.+.+
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg---------~~~~~~ 243 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD---------SVGDAL 243 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC---------chHHHH
Confidence 46788999999999999999987664 222233555555555543 245667666654 244555
Q ss_pred HHHHhhCCCCceEEEEcCCCh-hhhHHHHHHhHhhcccc--cccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcC
Q psy13907 147 RDVYAKNPAQLVAVGVNCLAP-HYVESLLTSAEVEGQSL--ELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFE 223 (698)
Q Consensus 147 ~~l~~~~~~~~~aIGiNC~~p-~~i~~~l~~~~~~~~~~--~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~ 223 (698)
..+. ...++++|+-++.- +.+..+...+. ..+.+ ++=+--....+-+...+..++++.+. .
T Consensus 244 ~~l~---~lpvd~l~lD~v~~~~~L~~~~~~~~-~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~------------~ 307 (750)
T TIGR01371 244 EALV---SLPVKGIGLDFVHGKGTLELVKAGFP-EDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAH------------V 307 (750)
T ss_pred HHHH---cCCCCEEEEEeccCcccHHHHHhcCC-CCCeEEEEEEeccccccCCHHHHHHHHHHHHhh------------C
Confidence 5553 46899999999763 33222211110 01111 11111112367888888998888765 2
Q ss_pred ccEEeecCCCC
Q psy13907 224 APLKAKPNRSL 234 (698)
Q Consensus 224 ~~~~~~pnag~ 234 (698)
.+|.+.|+-||
T Consensus 308 ~~l~v~psCsL 318 (750)
T TIGR01371 308 GKLVVSTSCSL 318 (750)
T ss_pred CCEEEeCCCCc
Confidence 34999999997
No 169
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=59.29 E-value=2.7e+02 Score=31.01 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=85.0
Q ss_pred CcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----EecccCCHH--HHHHHHHHHHh
Q psy13907 384 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLL-----AIETLPAQE--EAMVLAELIKE 456 (698)
Q Consensus 384 ~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDll-----l~ETi~~~~--Eakaa~~a~~~ 456 (698)
+.++...+=|.| ++.+ .|.+++..+..+|+|+| +.+--+... -.+++.+++++
T Consensus 126 rPl~~tiiKP~G----------------L~~~----~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~ 185 (364)
T cd08210 126 RPLLCSALKPQG----------------LSAA----ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAE 185 (364)
T ss_pred CceEEEEecccc----------------CCHH----HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHH
Confidence 456777787743 3343 45666777788999998 334333332 33455666654
Q ss_pred c---CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC--CChhhhHHHHHHhcCC-CCEEEecCCCCC
Q psy13907 457 Y---PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC--LAPHYVESLLTSAGRD-VPLLCCPNSGET 530 (698)
Q Consensus 457 ~---~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC--~~p~~~~~~l~~l~~~-~pl~~yPNaG~~ 530 (698)
. ++..++..+.+.. . ..++.+........+..++.+|- .|-..+..+-+ ... .||..||+.-..
T Consensus 186 a~~eTG~~~~y~~Nita-------~-~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~--~~~~l~i~aHra~~ga 255 (364)
T cd08210 186 ANAETGGRTLYAPNVTG-------P-PTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAE--DFDFLPILAHPAFAGA 255 (364)
T ss_pred HHhhcCCcceEEEecCC-------C-HHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHh--cCCCcEEEEccccccc
Confidence 2 2333344444432 2 22444443322225556777777 34443333322 145 889999987333
Q ss_pred cCCCCcccccCCChhhHHH--HHHH-HHHcCCeEE-----eecCCCchHHHHHHHhcc
Q psy13907 531 FDPGQRIWMNKDSVPSVDT--YVPR-WLDTGVKYV-----GGCCRTNADDMKNVNQVP 580 (698)
Q Consensus 531 ~d~~~g~~~~~~~p~~~a~--~~~~-~~~~G~~ii-----GGCCGTtP~hI~al~~~v 580 (698)
+. .+|..++. ...+ |.-.|+.++ ||==..+++...++++.+
T Consensus 256 ~~---------~~~~~is~~~~~~kl~RlaGad~~~~~~~~g~~~~~~e~~~~ia~~~ 304 (364)
T cd08210 256 FV---------SSGDGISHALLFGTLFRLAGADAVIFPNYGGRFGFSREECQAIADAC 304 (364)
T ss_pred cc---------cCCCcccHHHHHHHHHHHhCCCEEEeCCCcCCccCCHHHHHHHHHHh
Confidence 21 12222322 2333 445787777 774446888888887753
No 170
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=59.16 E-value=2.4e+02 Score=30.93 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCEEEe
Q psy13907 411 STTPQELIDYHRPRIEALIQGG-IDLLAI 438 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~G-vDlll~ 438 (698)
..|.+|.. +.++.|.+.| +|+|-+
T Consensus 224 G~~~~e~~----~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 224 GLSPDEAL----EIAARLAAEGLIDYVNV 248 (343)
T ss_pred CCCHHHHH----HHHHHHHhcCCCCEEEe
Confidence 36777764 5577788888 899865
No 171
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=59.13 E-value=1.5e+02 Score=32.50 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
+.-..|+..|.++|+|++=+ |+|+.++++++-+..+ ...+|++.-+.|+ ..-++..+. .+++.|
T Consensus 34 ~atv~QI~~L~~aGceiVRv-avp~~~~A~al~~I~~-~~~iPlVADIHFd----------~~lAl~a~~----~g~dki 97 (346)
T TIGR00612 34 DSTVAQIRALEEAGCDIVRV-TVPDRESAAAFEAIKE-GTNVPLVADIHFD----------YRLAALAMA----KGVAKV 97 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHh-CCCCCEEEeeCCC----------cHHHHHHHH----hccCeE
Confidence 34556999999999999985 7999988886655544 4789999988875 223444443 578999
Q ss_pred EEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCC
Q psy13907 161 GVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSL 234 (698)
Q Consensus 161 GiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~ 234 (698)
=+|=... + +++...++++.-.++ +.||-+==|+|=
T Consensus 98 RINPGNi-------------g--------------~~e~v~~vv~~ak~~------------~ipIRIGVN~GS 132 (346)
T TIGR00612 98 RINPGNI-------------G--------------FRERVRDVVEKARDH------------GKAMRIGVNHGS 132 (346)
T ss_pred EECCCCC-------------C--------------CHHHHHHHHHHHHHC------------CCCEEEecCCCC
Confidence 9997651 0 356666676665555 788888888873
No 172
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=59.09 E-value=1.1e+02 Score=32.49 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEe-cc-----cCCHHHHHHHHHHHHhc-C-CCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAI-ET-----LPAQEEAMVLAELIKEY-P-GLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~-ET-----i~~~~Eakaa~~a~~~~-~-~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.+++ +.++..++.+++.|||-+++ -| .-+..|=+.+++.+.+. . +.|+++... +.+..+
T Consensus 18 ~iD~----~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~~~~~ 84 (292)
T PRK03170 18 SVDF----AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG---------SNSTAE 84 (292)
T ss_pred CcCH----HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC---------CchHHH
Confidence 4565 44667788889999999873 33 35667777777766642 2 478876553 234566
Q ss_pred HHHHHHHhCCCCceEEEEcC---C--ChhhhHHHHHHhc--CCCCEEEecCC
Q psy13907 483 IARDVYAKNPAQLVAVGVNC---L--APHYVESLLTSAG--RDVPLLCCPNS 527 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC---~--~p~~~~~~l~~l~--~~~pl~~yPNa 527 (698)
+++........+++++.+-= . ..+.+..+.+.+. .+.|+++|-+-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 76665433334555555532 1 3456777777775 68999999543
No 173
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=59.04 E-value=57 Score=35.21 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEE
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSC 130 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~ 130 (698)
.--+|.+++.++|+|.+.+|...+.+|++.+.+.+ +.|+++++..
T Consensus 166 eaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~----~~P~~~nv~~ 210 (294)
T TIGR02319 166 EAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEI----DAPLLANMVE 210 (294)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc----CCCeeEEEEe
Confidence 34568999999999999999999999988777653 4688877764
No 174
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=59.04 E-value=2.7e+02 Score=30.22 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EecccC-----CHHHH--------HHHHHHHHhcCCCeEEEEEEecCCCccCCCCcH
Q psy13907 415 QELIDYHRPRIEALIQGGIDLL-AIETLP-----AQEEA--------MVLAELIKEYPGLKAWISFSCKDEKHTCHGDKF 480 (698)
Q Consensus 415 del~~~y~~qi~~L~~~GvDll-l~ETi~-----~~~Ea--------kaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l 480 (698)
+.+.+.-.+.++.+.++|+|.+ +++... +..+. +-++..+++. +.+.++-+ | |.+
T Consensus 176 ~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~-g~~~ilH~-C--------G~~- 244 (340)
T TIGR01463 176 ELALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI-GGITVLHI-C--------GFT- 244 (340)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc-CCceEEEE-C--------CCc-
Confidence 4444566788888889999985 444322 22222 2234444443 33434333 2 111
Q ss_pred HHHHHHHHHhCCCCceEEEEc-CCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCC
Q psy13907 481 GLIARDVYAKNPAQLVAVGVN-CLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGV 559 (698)
Q Consensus 481 ~~~v~~~~~~~~~~~~~iGlN-C~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~ 559 (698)
...++.+.+ .+++++.+- +.+ +..+.+.++.+ +.+.-|- |+.. .....|+++..+.+++.++.|.
T Consensus 245 ~~~~~~l~~---~g~d~ls~d~~~~---l~~~~~~~g~~--~~i~Gni----dp~~--ll~~gt~eeI~~~v~~~l~~~~ 310 (340)
T TIGR01463 245 QPILRDIAN---NGCFGFSVDMKPG---MDHAKRVIGGQ--ASLVGNL----SPFS--TLMNGTPEKVKKLAKEVLYNGG 310 (340)
T ss_pred hhhHHHHHH---hCCCEEeecCCCC---HHHHHHHcCCc--eEEEecC----ChHH--HhcCCCHHHHHHHHHHHHHcCC
Confidence 123444433 233333322 233 44443333322 3334443 1110 1124688999999999999887
Q ss_pred eEEeecCC----CchHHHHHHHhccccCC
Q psy13907 560 KYVGGCCR----TNADDMKNVNQVPVKFS 584 (698)
Q Consensus 560 ~iiGGCCG----TtP~hI~al~~~v~~~~ 584 (698)
-|++--|| |-++.|++|.++++.++
T Consensus 311 ~Il~~gcgi~~~tp~eni~a~v~a~~~~~ 339 (340)
T TIGR01463 311 DIVMPGCDIDWMTPLENLKAMIEACKSIK 339 (340)
T ss_pred eEECCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 78877777 56799999999988764
No 175
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=58.86 E-value=92 Score=33.23 Aligned_cols=143 Identities=13% Similarity=0.042 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHHHHHHh-CCCCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHH
Q psy13907 411 STTPQELIDYHRPRIEALIQ-GGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFG 481 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~-~GvDlll~E-T-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~ 481 (698)
.+++ +.++..++.+++ .|||-|++- | .-+..|-+.+++.+.+. .+.||++... ..+..
T Consensus 20 ~iD~----~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~ 86 (293)
T PRK04147 20 QIDE----QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTA 86 (293)
T ss_pred CcCH----HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHH
Confidence 4666 445677888888 999988653 2 23456777777766542 2478876552 23466
Q ss_pred HHHHHHHHhCCCCceEEEEcC---C--ChhhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHH
Q psy13907 482 LIARDVYAKNPAQLVAVGVNC---L--APHYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRW 554 (698)
Q Consensus 482 ~~v~~~~~~~~~~~~~iGlNC---~--~p~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~ 554 (698)
++++........+++++-+-- . ..+.+..+.+.+. .+.|+++|-|-+ ..| . +.+++.+.+.+
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~-----~tg-~--~l~~~~l~~L~--- 155 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPA-----LTG-V--NLSLDQFNELF--- 155 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCch-----hhc-c--CCCHHHHHHHh---
Confidence 777665433334555555443 1 2356777777765 689999996542 112 1 34565555443
Q ss_pred HHcCCeEEee-cCCCchHHHHHHHhc
Q psy13907 555 LDTGVKYVGG-CCRTNADDMKNVNQV 579 (698)
Q Consensus 555 ~~~G~~iiGG-CCGTtP~hI~al~~~ 579 (698)
+ --||+|= ++.....++..+.+.
T Consensus 156 -~-~pnvvgiK~s~~d~~~~~~~~~~ 179 (293)
T PRK04147 156 -T-LPKVIGVKQTAGDLYQLERIRKA 179 (293)
T ss_pred -c-CCCEEEEEeCCCCHHHHHHHHHh
Confidence 2 1244443 222356676666544
No 176
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.69 E-value=1.4e+02 Score=32.09 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCCCHHH---HHHHHHHHHHHHHhCCCCEEEEecC----------c---------------CHHHHHHHHHHHHhcC--C
Q psy13907 72 DSTTPQE---LIDYHRPRIEALIQGGIDLLAIETL----------P---------------AQEEAMVLAELIKEYP--G 121 (698)
Q Consensus 72 ~~~s~ee---l~~~~~~qi~~l~~~GVD~il~ETi----------~---------------~l~Ea~aa~~a~~~~~--~ 121 (698)
..+|.+| +.+.|.+-++...++|.|.|=+=.- | ....+..+++++++.. +
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3466555 5566666666677899998755321 0 1233456667777643 5
Q ss_pred CeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCC
Q psy13907 122 LKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 122 ~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
.|+.+-++..+ ...+|.+.++++..+......+++.|-+....
T Consensus 209 ~~i~vris~~~--~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 209 FPVGVRLSADD--FVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred ceEEEEechhc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 68887776533 23356677766554433334678888776654
No 177
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=58.55 E-value=2.1e+02 Score=28.99 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=71.0
Q ss_pred HHHHHHHhCCCCEEEecccCCH-----HHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceE
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQ-----EEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 497 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~-----~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~ 497 (698)
+.++.+.+.|+|.+.+=++... .+...+....+. .+.|++++.-+. +++++-..+. .+...
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-~~~pv~~~GGI~---------~~ed~~~~~~----~Ga~~ 99 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-VDIPVQVGGGIR---------SLETVEALLD----AGVSR 99 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-CCCCEEEcCCcC---------CHHHHHHHHH----cCCCE
Confidence 3444455579999988776443 233334444444 578998765443 4556555442 34556
Q ss_pred EEEcC---CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe-EE-------eecC
Q psy13907 498 VGVNC---LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK-YV-------GGCC 566 (698)
Q Consensus 498 iGlNC---~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~-ii-------GGCC 566 (698)
+-++. ..|+.+..+.+.......+++-.-.|... ..| |.. .+.....+.++.+.+.|+. ++ |..-
T Consensus 100 vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~--~~g-~~~-~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~ 175 (233)
T PRK00748 100 VIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVA--TDG-WLE-TSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLS 175 (233)
T ss_pred EEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEE--Ecc-Cee-cCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcC
Confidence 66777 36667777777664233333222112211 112 421 1122334445555565644 22 2333
Q ss_pred CCchHHHHHHHhcc
Q psy13907 567 RTNADDMKNVNQVP 580 (698)
Q Consensus 567 GTtP~hI~al~~~v 580 (698)
|..-+.|+++++.+
T Consensus 176 G~d~~~i~~l~~~~ 189 (233)
T PRK00748 176 GPNVEATRELAAAV 189 (233)
T ss_pred CCCHHHHHHHHHhC
Confidence 44456667666544
No 178
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=58.13 E-value=1.9e+02 Score=31.85 Aligned_cols=139 Identities=14% Similarity=0.196 Sum_probs=81.6
Q ss_pred CeEEEEecCCcCCCCCCCCCccCCCC-CCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeE
Q psy13907 46 HVRVAGSLGSYGAFLHDGSEYRGDYI-DSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKA 124 (698)
Q Consensus 46 ~v~VAGSIGP~g~~l~~gseY~g~y~-~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv 124 (698)
.+=|.|=||=..-... +.|.|. ..-+.+++.+ -.+++++|.++|++.|++|-+|+. -++.+.+ + .++|.
T Consensus 151 GIPV~gHiGLtPQs~~----~lGGykvqGr~~~~a~~-li~dA~ale~AGAf~ivLE~Vp~~-la~~It~---~-l~IPt 220 (332)
T PLN02424 151 GIAVMGHVGLTPQAIS----VLGGFRPQGRTAESAVK-VVETALALQEAGCFAVVLECVPAP-VAAAITS---A-LQIPT 220 (332)
T ss_pred CCCEEEeecccceeeh----hhcCccccCCCHHHHHH-HHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHH---h-CCCCE
Confidence 4557777774432211 223332 1134455555 445899999999999999999987 3444433 2 45776
Q ss_pred EEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC------CChhh----------hHHHHHHhHhhcccccccc
Q psy13907 125 WISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC------LAPHY----------VESLLTSAEVEGQSLELPV 188 (698)
Q Consensus 125 ~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC------~~p~~----------i~~~l~~~~~~~~~~~~p~ 188 (698)
+ .+ - .|.-.||+-+ +. -|.+|++= ..|.+ +..+++.+.+..+...+|.
T Consensus 221 I-GI--G-AG~~cDGQVL--V~----------~D~LG~~~~p~h~~~~PkFvk~y~~~~~~~~~A~~~y~~eVk~g~FP~ 284 (332)
T PLN02424 221 I-GI--G-AGPFCSGQVL--VY----------HDLLGMMQHPHHAKVTPKFCKQYAKVGEVINKALAEYKEEVENGAFPG 284 (332)
T ss_pred E-ee--c-CCCCCCceeE--eH----------HhhcCCCCCccccCCCCchHHHHHhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5 33 1 2333466532 11 13344432 23444 3466777777777778898
Q ss_pred cccc-cCCChHHHHHHHHHHHHc
Q psy13907 189 NNTL-ISRKPIQLLSIELELAAA 210 (698)
Q Consensus 189 ~~~~-~~~gP~~~~~~~~~l~~~ 210 (698)
.+-. ++..+..+.++.+.|.+.
T Consensus 285 ~eh~~~~~~~~~~~~~~~~l~~~ 307 (332)
T PLN02424 285 PAHSPYKISSAEVDGFAEALQKR 307 (332)
T ss_pred ccccCCCCCHHHHHHHHHHHHHc
Confidence 7766 777777777777777665
No 179
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=58.09 E-value=1.8e+02 Score=32.21 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
+.-..|+..|.++|+|++=+ |+|+.++++++-+..++ ..+|++.-+.|+ ..-+++++. .+++.|
T Consensus 42 ~atv~Qi~~L~~aGceiVRv-av~~~~~a~al~~I~~~-~~iPlvADIHFd----------~~lAl~a~~----~G~~~i 105 (360)
T PRK00366 42 EATVAQIKRLARAGCEIVRV-AVPDMEAAAALPEIKKQ-LPVPLVADIHFD----------YRLALAAAE----AGADAL 105 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEE-ccCCHHHHHhHHHHHHc-CCCCEEEecCCC----------HHHHHHHHH----hCCCEE
Confidence 44566999999999999985 79999888876655555 689999888774 233444443 578999
Q ss_pred EEcCCChhhhHHHHHHhHhhcccccccccccccCCC-hHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCC
Q psy13907 161 GVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRK-PIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSL 234 (698)
Q Consensus 161 GiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~g-P~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~ 234 (698)
=+|=... . . .+.+.++++.-.++ +.||-+=-|+|=
T Consensus 106 RINPGNi--------------------------g-~~~~~v~~vv~~ak~~------------~ipIRIGvN~GS 141 (360)
T PRK00366 106 RINPGNI--------------------------G-KRDERVREVVEAAKDY------------GIPIRIGVNAGS 141 (360)
T ss_pred EECCCCC--------------------------C-chHHHHHHHHHHHHHC------------CCCEEEecCCcc
Confidence 9987651 1 2 56676777766655 788988889873
No 180
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=57.90 E-value=63 Score=36.43 Aligned_cols=68 Identities=9% Similarity=-0.052 Sum_probs=39.8
Q ss_pred CCCeEEEEEEEcCCCccCCCC-CHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChH
Q psy13907 120 PGLKAWISFSCKDEKHTCHGD-KFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPI 198 (698)
Q Consensus 120 ~~~Pv~iSft~~~~g~l~~G~-~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~ 198 (698)
.+.|+++|+. |. +.++..+.+...+..++++|=+|++.|..+.. + .. -..+-.-|+
T Consensus 98 ~~~p~i~si~---------g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~--~---~~---------g~~~~~~~~ 154 (420)
T PRK08318 98 PDRALIASIM---------VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSE--R---GM---------GSAVGQVPE 154 (420)
T ss_pred CCceEEEEec---------cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccc--c---CC---------cccccCCHH
Confidence 4689998984 33 33433333322223579999999998752110 0 00 001234688
Q ss_pred HHHHHHHHHHHc
Q psy13907 199 QLLSIELELAAA 210 (698)
Q Consensus 199 ~~~~~~~~l~~~ 210 (698)
.+.++++.+.+.
T Consensus 155 ~~~~i~~~v~~~ 166 (420)
T PRK08318 155 LVEMYTRWVKRG 166 (420)
T ss_pred HHHHHHHHHHhc
Confidence 889999988775
No 181
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=57.86 E-value=1.1e+02 Score=33.55 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
+.-..|+..|.++|+|++-+ |+|+.+.+.|.-+.-++ .++|++.-|.|.. + -++..+ ..+++.+
T Consensus 36 ~aTv~QI~~L~~aG~dIVRv-tv~~~e~A~A~~~Ik~~-~~vPLVaDiHf~~--r--------la~~~~----~~g~~k~ 99 (361)
T COG0821 36 EATVAQIKALERAGCDIVRV-TVPDMEAAEALKEIKQR-LNVPLVADIHFDY--R--------LALEAA----ECGVDKV 99 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHh-CCCCEEEEeeccH--H--------HHHHhh----hcCcceE
Confidence 45567999999999999885 89999888776665555 6899999998852 1 122222 1346666
Q ss_pred EEcCC---ChhhhHHHHHHhHhhcccccccccccccC
Q psy13907 161 GVNCL---APHYVESLLTSAEVEGQSLELPVNNTLIS 194 (698)
Q Consensus 161 GiNC~---~p~~i~~~l~~~~~~~~~~~~p~~~~~~~ 194 (698)
=||=. ..+.+...++..++.+.|.-+=+|+|.++
T Consensus 100 RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLe 136 (361)
T COG0821 100 RINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLE 136 (361)
T ss_pred EECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchh
Confidence 66653 33445666666666655555555666554
No 182
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=57.60 E-value=67 Score=35.13 Aligned_cols=112 Identities=12% Similarity=-0.018 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCC-CEEEEecCcCHHHHHH-HHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCce
Q psy13907 82 YHRPRIEALIQGGI-DLLAIETLPAQEEAMV-LAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 158 (698)
Q Consensus 82 ~~~~qi~~l~~~GV-D~il~ETi~~l~Ea~a-a~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~ 158 (698)
.|+..++. .|+ |++.-|-+..-.=+.. ..+.++.. .+.|+++++. |.++++.++........++|
T Consensus 25 ~fR~~~~~---~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~---------g~~p~~~~~aA~~~~~~g~d 92 (333)
T PRK11815 25 HCRYFHRL---LSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG---------GSDPADLAEAAKLAEDWGYD 92 (333)
T ss_pred HHHHHHHH---hCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe---------CCCHHHHHHHHHHHHhcCCC
Confidence 45544433 354 8888786643211110 11122211 3578888883 55555554443322346899
Q ss_pred EEEEcCCChhhhHHHHHHhHhhccccccccccc-ccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeec
Q psy13907 159 AVGVNCLAPHYVESLLTSAEVEGQSLELPVNNT-LISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKP 230 (698)
Q Consensus 159 aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~-~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 230 (698)
+|-|||+.|..- ..+ ..+| .+..-|+.+.++++.+.+. . +.||+++=
T Consensus 93 ~IdlN~gCP~~~------v~~--------~~~Gs~L~~~p~~~~eiv~avr~~------v-----~~pVsvKi 140 (333)
T PRK11815 93 EINLNVGCPSDR------VQN--------GRFGACLMAEPELVADCVKAMKDA------V-----SIPVTVKH 140 (333)
T ss_pred EEEEcCCCCHHH------ccC--------CCeeeHHhcCHHHHHHHHHHHHHH------c-----CCceEEEE
Confidence 999999885331 100 0112 2245788899999999776 3 56777763
No 183
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.45 E-value=52 Score=35.19 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~-~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
+|+...+++|+|.|++.+| +.++++.+++.+++.. +..+.+-. ..|-+++.+-+... .|+|.|.+-
T Consensus 193 eea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~lea--------SGGI~~~ni~~yA~----tGvD~Is~g 259 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVKIEV--------SGGITPENIEEYAK----LDVDVISLG 259 (278)
T ss_pred HHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEEEEE--------ECCCCHHHHHHHHH----cCCCEEEeC
Confidence 4555667799999999998 6889999999887631 11222222 13667777766543 688988876
Q ss_pred C
Q psy13907 164 C 164 (698)
Q Consensus 164 C 164 (698)
.
T Consensus 260 a 260 (278)
T PRK08385 260 A 260 (278)
T ss_pred h
Confidence 5
No 184
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=57.31 E-value=2.6e+02 Score=30.21 Aligned_cols=93 Identities=14% Similarity=-0.021 Sum_probs=63.4
Q ss_pred HHHHHHHhCCCCEEEeccc--------------CCHHHHHHHHHHHHhcC-CCeEEEEEEecCCCccCCCCcHHHHHHHH
Q psy13907 423 PRIEALIQGGIDLLAIETL--------------PAQEEAMVLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIARDV 487 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi--------------~~~~Eakaa~~a~~~~~-~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~ 487 (698)
.-++.+.++||-.|.+|-. -+..|...=++++++.. +.+++|---.+. ..+..+.++++..
T Consensus 96 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa----~~~~g~deaI~Ra 171 (294)
T TIGR02319 96 RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA----RESFGLDEAIRRS 171 (294)
T ss_pred HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc----cccCCHHHHHHHH
Confidence 4578899999999999963 25666666666666432 345666554433 2345688999887
Q ss_pred HHhCCCCceEEEEcC-CChhhhHHHHHHhcCCCCE
Q psy13907 488 YAKNPAQLVAVGVNC-LAPHYVESLLTSAGRDVPL 521 (698)
Q Consensus 488 ~~~~~~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl 521 (698)
.....++.++|=+-+ ..++.++.+.+.+. .|+
T Consensus 172 ~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~--~P~ 204 (294)
T TIGR02319 172 REYVAAGADCIFLEAMLDVEEMKRVRDEID--APL 204 (294)
T ss_pred HHHHHhCCCEEEecCCCCHHHHHHHHHhcC--CCe
Confidence 544346777777777 67888888888774 454
No 185
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=57.19 E-value=2.1e+02 Score=28.47 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEE
Q psy13907 422 RPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 422 ~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGl 500 (698)
.+.++.| +.|+|++=+-|-........++..+++. ++..+.+-+-+.+.+. ..++.+.+ .+.+.|-+
T Consensus 15 ~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--------~~~~~~~~---~Gad~i~v 82 (206)
T TIGR03128 15 LELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--------YEAEQAFA---AGADIVTV 82 (206)
T ss_pred HHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--------HHHHHHHH---cCCCEEEE
Confidence 3467777 7899976443233444445566666653 4556666554434221 12344433 55677778
Q ss_pred cC-CChhhhHHHHHHhc-CCCCEEEe-cCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCC--------Cc
Q psy13907 501 NC-LAPHYVESLLTSAG-RDVPLLCC-PNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCR--------TN 569 (698)
Q Consensus 501 NC-~~p~~~~~~l~~l~-~~~pl~~y-PNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCG--------Tt 569 (698)
.| .++..+..+++..+ ..+++++- +|. ....+.++.+.+.|+.+++===| ..
T Consensus 83 h~~~~~~~~~~~i~~~~~~g~~~~~~~~~~-----------------~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 83 LGVADDATIKGAVKAAKKHGKEVQVDLINV-----------------KDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred eccCCHHHHHHHHHHHHHcCCEEEEEecCC-----------------CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 88 45445556666555 45666552 332 12334445566778888852111 24
Q ss_pred hHHHHHHHhccc
Q psy13907 570 ADDMKNVNQVPV 581 (698)
Q Consensus 570 P~hI~al~~~v~ 581 (698)
++.|+++++.+.
T Consensus 146 ~~~i~~l~~~~~ 157 (206)
T TIGR03128 146 FEDLQTILKLVK 157 (206)
T ss_pred HHHHHHHHHhcC
Confidence 556666666654
No 186
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=56.78 E-value=34 Score=37.21 Aligned_cols=117 Identities=11% Similarity=0.017 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCC-CEEEEecCcCHHHHHHH-HHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCce
Q psy13907 82 YHRPRIEALIQGGI-DLLAIETLPAQEEAMVL-AELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 158 (698)
Q Consensus 82 ~~~~qi~~l~~~GV-D~il~ETi~~l~Ea~aa-~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~ 158 (698)
.|+...+. -|+ |+..=|.+..-.=+..- -+.+... .+.|+++++. |.++++.++........+++
T Consensus 15 ~fR~l~~~---~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~---------g~~p~~~~~aA~~~~~~g~d 82 (318)
T TIGR00742 15 HFRYFLRL---LSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG---------GSDPNDLAKCAKIAEKRGYD 82 (318)
T ss_pred HHHHHHHH---hCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc---------cCCHHHHHHHHHHHHhCCCC
Confidence 45554433 365 88877766542100000 0112111 3678888873 44555444433222335799
Q ss_pred EEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCC
Q psy13907 159 AVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSL 234 (698)
Q Consensus 159 aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~ 234 (698)
+|-|||+.|..- ..++.. =..+-.-|+.+.++++.+.++ . +.||+++=..|.
T Consensus 83 ~IDlN~GCP~~~-----v~~~g~--------Gs~Ll~~p~~~~~iv~av~~~------~-----~~PVsvKiR~g~ 134 (318)
T TIGR00742 83 EINLNVGCPSDR-----VQNGNF--------GACLMGNADLVADCVKAMQEA------V-----NIPVTVKHRIGI 134 (318)
T ss_pred EEEEECCCCHHH-----hCCCCe--------ehHhhcCHHHHHHHHHHHHHH------h-----CCCeEEEEecCC
Confidence 999999886431 011100 011234788889999999876 3 678888876664
No 187
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=56.74 E-value=2.6e+02 Score=29.96 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEe-cccC-----CHHHH--------HHHHHHHHhcCCCeEEEEEEecCCCccCCCCcH
Q psy13907 415 QELIDYHRPRIEALIQGGIDLLAI-ETLP-----AQEEA--------MVLAELIKEYPGLKAWISFSCKDEKHTCHGDKF 480 (698)
Q Consensus 415 del~~~y~~qi~~L~~~GvDlll~-ETi~-----~~~Ea--------kaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l 480 (698)
+.+.+...++++.+.++|+|++.+ |-.. +...- +.++..+++. +.|+++ ..|-+ +
T Consensus 164 ~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~-g~~~~l-H~cG~--------~- 232 (330)
T cd03465 164 EKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL-GGPVIH-HNCGD--------T- 232 (330)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc-CCceEE-EECCC--------c-
Confidence 455556678888888899997644 3221 22222 3344445442 456543 33321 1
Q ss_pred HHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcC-C
Q psy13907 481 GLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTG-V 559 (698)
Q Consensus 481 ~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G-~ 559 (698)
...++.+.+ .++++ +|+-....+..+.+.++. -..+.-|-. +. + .....++++..+.+++.++.+ -
T Consensus 233 ~~~~~~l~~---~~~d~--~~~d~~~dl~~~~~~~g~--~~~i~G~id----~~-~-~l~~gt~eei~~~v~~~l~~~~~ 299 (330)
T cd03465 233 APILELMAD---LGADV--FSIDVTVDLAEAKKKVGD--KACLMGNLD----PI-D-VLLNGSPEEIKEEVKELLEKLLK 299 (330)
T ss_pred hhHHHHHHH---hCCCe--EeecccCCHHHHHHHhCC--ceEEEeCcC----hH-H-hhcCCCHHHHHHHHHHHHHHHhC
Confidence 033444433 12222 222111244555444432 233333331 11 0 112457888989888887653 2
Q ss_pred ----eEEeecCC----CchHHHHHHHhcccc
Q psy13907 560 ----KYVGGCCR----TNADDMKNVNQVPVK 582 (698)
Q Consensus 560 ----~iiGGCCG----TtP~hI~al~~~v~~ 582 (698)
-|++--|| |-++.|+++.+++++
T Consensus 300 ~~~~~il~~gc~i~~~~p~enl~a~v~a~~~ 330 (330)
T cd03465 300 GGGGYILSSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred CCCCEEEeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 27766666 567999999888763
No 188
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=56.67 E-value=1.9e+02 Score=29.26 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=21.7
Q ss_pred hcccChHHHHHHHHHHHHHhcchhhcccc
Q psy13907 309 FLHSNRQAVIDTHRDYVRAGCDIVTTNTY 337 (698)
Q Consensus 309 ~~l~~Pe~V~~iH~~yl~AGAdII~TNTf 337 (698)
+.-..|+-..+.-+...+||+|.|+-|--
T Consensus 61 i~g~~~~~~~~aa~~~~~aG~d~ieln~g 89 (231)
T cd02801 61 LGGSDPETLAEAAKIVEELGADGIDLNMG 89 (231)
T ss_pred EcCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33457887777667777899999998854
No 189
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=56.62 E-value=2.8e+02 Score=30.80 Aligned_cols=192 Identities=18% Similarity=0.252 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcC--CCCCCCCCCCCCCCC--------CCC----HHHHHHHHH
Q psy13907 357 QLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYG--AFLHDGSEYRGDYID--------STT----PQELIDYHR 422 (698)
Q Consensus 357 eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~--~~l~~~~ey~g~y~~--------~~t----~del~~~y~ 422 (698)
.....|+++.|+-... ...+|+++-||.. +++-.|-. +-+|.+ +-. .+.+.+.-.
T Consensus 124 ~~V~~ai~~lrekl~~----------~~pLIgf~gsP~TlAsymieg~~-s~~~~~~k~~m~~~P~~~~~ll~kltd~~i 192 (352)
T COG0407 124 PYVLDAIKLLREKLGG----------EVPLIGFAGSPWTLASYLIEGGG-SKDFSKTKAMMYTEPDAVHALLDKLTDAVI 192 (352)
T ss_pred HHHHHHHHHHHHHcCC----------CCCeEEecCCHHHHHHHHHcCCC-cccHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 3556677777765532 2468999999976 33322200 000100 001 234444455
Q ss_pred HHHHHHHhCCCCEEEe-cc------cCCHHH-----HHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHh
Q psy13907 423 PRIEALIQGGIDLLAI-ET------LPAQEE-----AMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 490 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~-ET------i~~~~E-----akaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~ 490 (698)
+-+++++++|+|.|.+ ++ +.+..+ .+-+..-+++...-+.+|-| |.+ .| ..++.+..
T Consensus 193 ~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f-~~g-----a~----~~l~~m~~- 261 (352)
T COG0407 193 EYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHF-CKG-----AG----HLLEDMAK- 261 (352)
T ss_pred HHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCcEEEE-CCC-----cH----HHHHHHHh-
Confidence 6677788999999843 33 111122 12233344432221334455 322 11 12333322
Q ss_pred CCCCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeE----Eeec
Q psy13907 491 NPAQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKY----VGGC 565 (698)
Q Consensus 491 ~~~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~i----iGGC 565 (698)
.+.+++|+-+ ++ +..+.+.+... +.++-|--... + ..+++.+.+.+++.++.|.+. +==-
T Consensus 262 --~g~d~l~vdw~v~---l~~a~~~~~~~--~~lqGNldP~l------L--~~~~~~i~~~~~~iL~~~~~~~~~IfnlG 326 (352)
T COG0407 262 --TGFDVLGVDWRVD---LKEAKKRLGDK--VALQGNLDPAL------L--YAPPEAIKEEVKRILEDGGDGSGYIFNLG 326 (352)
T ss_pred --cCCcEEeeccccC---HHHHHHHhCCC--ceEEeccChHh------h--cCCHHHHHHHHHHHHHHhccCCCceecCC
Confidence 4467888888 45 55554444422 66777662211 1 345677888888888877654 2223
Q ss_pred CC----CchHHHHHHHhccccCCC
Q psy13907 566 CR----TNADDMKNVNQVPVKFSI 585 (698)
Q Consensus 566 CG----TtP~hI~al~~~v~~~~~ 585 (698)
|| |-|+|++++.++++.+..
T Consensus 327 hGI~P~tp~e~v~~lve~v~~~~~ 350 (352)
T COG0407 327 HGILPETPPENVKALVEAVHEYSR 350 (352)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhcc
Confidence 55 677999999999987654
No 190
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=56.20 E-value=1.7e+02 Score=30.29 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=70.9
Q ss_pred HHHHHHHhCCCCEEEecccC----CHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEE
Q psy13907 423 PRIEALIQGGIDLLAIETLP----AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 498 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~----~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~i 498 (698)
++++.+.+.|+|.|.+=-.. .-.+. ..+..+.+....|+|+..-+. +++++-..+. .+..-+
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~~g~~~n~-~~i~~i~~~~~~pv~vgGGir---------s~edv~~~l~----~Ga~kv 101 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAAFGRGSNR-ELLAEVVGKLDVKVELSGGIR---------DDESLEAALA----TGCARV 101 (241)
T ss_pred HHHHHHHHCCCCEEEEEeccccCCCCccH-HHHHHHHHHcCCCEEEcCCCC---------CHHHHHHHHH----CCCCEE
Confidence 34455555788766542221 11222 344444433578998766443 3566655552 445567
Q ss_pred EEcC---CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe--------EEeecCC
Q psy13907 499 GVNC---LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK--------YVGGCCR 567 (698)
Q Consensus 499 GlNC---~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~--------iiGGCCG 567 (698)
+++. ..|+.+..+++......-+++--..+... .. .|. .+.....++++.+.+.|+. -.|..-|
T Consensus 102 viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~--~~-Gw~--~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G 176 (241)
T PRK14024 102 NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLA--AR-GWT--RDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG 176 (241)
T ss_pred EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEec--cC-Cee--ecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC
Confidence 7787 37888888888775222121111112111 12 363 2334455566666666633 2355556
Q ss_pred CchHHHHHHHhc
Q psy13907 568 TNADDMKNVNQV 579 (698)
Q Consensus 568 TtP~hI~al~~~ 579 (698)
..-+.|+++++.
T Consensus 177 ~d~~~i~~i~~~ 188 (241)
T PRK14024 177 PNLELLREVCAR 188 (241)
T ss_pred CCHHHHHHHHhh
Confidence 555556665553
No 191
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=56.05 E-value=63 Score=30.95 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHH-----HHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCC
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAM-----VLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPA 493 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eak-----aa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~ 493 (698)
+.+.+.++.+.++|+|++.+++......-. ..+..+.+..+.|+++++.+.+. +..+...+..+.+ .
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~~---~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDA-----AAAVDIAAAAARA---A 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCc-----hhhhhHHHHHHHH---c
Confidence 456778888899999999888755222211 12333433457899999876552 2212111223322 4
Q ss_pred CceEEEEcCCCh---hhhHHHHHHhc---CCCCEEEecCC
Q psy13907 494 QLVAVGVNCLAP---HYVESLLTSAG---RDVPLLCCPNS 527 (698)
Q Consensus 494 ~~~~iGlNC~~p---~~~~~~l~~l~---~~~pl~~yPNa 527 (698)
+.+.|-+|+..+ +....+++.+. .+.++++.-+.
T Consensus 84 g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 84 GADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred CCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 556677777443 33455555554 26777666543
No 192
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=55.98 E-value=17 Score=38.87 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEE
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFS 467 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t 467 (698)
+.--+++++..++|+|+|+.|-+.+..|.+...++++ .|+.+..|
T Consensus 166 d~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~----~pl~~N~t 210 (289)
T COG2513 166 DDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP----VPLPANIT 210 (289)
T ss_pred HHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC----CCeeeEee
Confidence 3345788999999999999999999999988888876 56666665
No 193
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=55.88 E-value=43 Score=36.13 Aligned_cols=63 Identities=10% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
+|++..++.|+|+|++.+|+ .+|++.+++.++. .+.+..+ .|-++..+.+... .|+|.|.+-+
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~----~~~ieaS--------GGI~~~ni~~yA~----tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG----RALLEVS--------GNVTLETLREFAE----TGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC----CeEEEEE--------CCCCHHHHHHHHh----cCCCEEEeCc
Confidence 45555667999999999987 6899999986643 2333321 3677777776553 6889988876
No 194
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=55.51 E-value=2.8e+02 Score=30.10 Aligned_cols=138 Identities=17% Similarity=0.114 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCCCEEEecccCCH-H--HHHHHHHHHHh-------cCCCeEEEEEEecCCCccCCCCcHHHHHHHHHH
Q psy13907 420 YHRPRIEALIQGGIDLLAIETLPAQ-E--EAMVLAELIKE-------YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 489 (698)
Q Consensus 420 ~y~~qi~~L~~~GvDlll~ETi~~~-~--Eakaa~~a~~~-------~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~ 489 (698)
.|+..++.+ +|+|+..=|.++.. . ..+.......+ ..+.|+.+++.- .+.+.+.+++..+.+
T Consensus 15 ~fR~l~~~~--g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g------~~p~~~~~aA~~~~~ 86 (312)
T PRK10550 15 LVRELLTEV--NDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLG------QYPQWLAENAARAVE 86 (312)
T ss_pred HHHHHHHHh--CCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEecc------CCHHHHHHHHHHHHH
Confidence 355554433 35899999988742 1 11111111111 123688877741 223344555555533
Q ss_pred hCCCCceEEEEcCCChh-----------------hhHHHHHHhc----CCCCEEEecCCCCCcCCCCcccccCCChhhHH
Q psy13907 490 KNPAQLVAVGVNCLAPH-----------------YVESLLTSAG----RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVD 548 (698)
Q Consensus 490 ~~~~~~~~iGlNC~~p~-----------------~~~~~l~~l~----~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a 548 (698)
.+.+.|-+||..|. .+..+++.+. .++||++.-..| | + +.+++.
T Consensus 87 ---~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g---------~--~-~~~~~~ 151 (312)
T PRK10550 87 ---LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG---------W--D-SGERKF 151 (312)
T ss_pred ---cCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC---------C--C-CchHHH
Confidence 46789999993332 2333444443 258999887665 2 1 122355
Q ss_pred HHHHHHHHcCCeE---EeecC-----CC--chHHHHHHHhcc
Q psy13907 549 TYVPRWLDTGVKY---VGGCC-----RT--NADDMKNVNQVP 580 (698)
Q Consensus 549 ~~~~~~~~~G~~i---iGGCC-----GT--tP~hI~al~~~v 580 (698)
+.++.+.+.|+.. -|+.- |. .++.|+.+++.+
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~ 193 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL 193 (312)
T ss_pred HHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc
Confidence 6666677777433 34332 11 244566666554
No 195
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=55.50 E-value=1.9e+02 Score=31.82 Aligned_cols=124 Identities=13% Similarity=0.047 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCc---------------C---HHHHHHHHHHHHhcCCCeEEEEEEEcCC-----
Q psy13907 77 QELIDYHRPRIEALIQGGIDLLAIETLP---------------A---QEEAMVLAELIKEYPGLKAWISFSCKDE----- 133 (698)
Q Consensus 77 eel~~~~~~qi~~l~~~GVD~il~ETi~---------------~---l~Ea~aa~~a~~~~~~~Pv~iSft~~~~----- 133 (698)
+++.++|..+++ +|+=+|+.|... + +...+.+.+++++ .+.++++++.-.-.
T Consensus 37 ~~~~~~y~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~-~G~~i~~QL~H~G~~~~~~ 111 (337)
T PRK13523 37 NFHLIHYGTRAA----GQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHD-HGAKAAIQLAHAGRKAELE 111 (337)
T ss_pred HHHHHHHHHHHc----CCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHh-cCCEEEEEccCCCCCCCCC
Confidence 667778887765 688888888331 1 4556667777777 47788888743100
Q ss_pred --------------CccCCCCC---HHHHHHH----HHhhCCCCceEEEEcCCChhhhHHHHHHhHhhccccccccccc-
Q psy13907 134 --------------KHTCHGDK---FGLIARD----VYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNT- 191 (698)
Q Consensus 134 --------------g~l~~G~~---~~~~~~~----l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~- 191 (698)
+.....-+ ++++++. .+.....|.|+|-|||.+=-.+.+.|....|.-. +++|
T Consensus 112 ~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~Rt-----D~yGG 186 (337)
T PRK13523 112 GDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRT-----DEYGG 186 (337)
T ss_pred CCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcC-----CCCCC
Confidence 00111122 3333322 1111246999999999985555665555432211 1222
Q ss_pred ccCCChHHHHHHHHHHHHc
Q psy13907 192 LISRKPIQLLSIELELAAA 210 (698)
Q Consensus 192 ~~~~gP~~~~~~~~~l~~~ 210 (698)
.+..-..-++++++.+++.
T Consensus 187 slenR~Rf~~eii~~ir~~ 205 (337)
T PRK13523 187 SPENRYRFLREIIDAVKEV 205 (337)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 2222356677788888775
No 196
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=55.23 E-value=1.2e+02 Score=31.85 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHH-------H----HHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHH
Q psy13907 75 TPQELIDYHRPRIEALIQGGIDLLAIETLPAQE-------E----AMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG 143 (698)
Q Consensus 75 s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~-------E----a~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~ 143 (698)
+.+++.+.-..-+..|.++|+|.+++|-+.|.- | +-.+++-+++..++|+=|.+--+ |+ .
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrN------d~--v- 98 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRN------DA--V- 98 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeecc------cc--H-
Confidence 568888888888999999999999999887631 2 11122222222578887776321 11 1
Q ss_pred HHHHHHHhhCCCCceEEEEcCC
Q psy13907 144 LIARDVYAKNPAQLVAVGVNCL 165 (698)
Q Consensus 144 ~~~~~l~~~~~~~~~aIGiNC~ 165 (698)
.++.-.. ..+++.|=+|--
T Consensus 99 aA~~IA~---a~gA~FIRVN~~ 117 (263)
T COG0434 99 AALAIAY---AVGADFIRVNVL 117 (263)
T ss_pred HHHHHHH---hcCCCEEEEEee
Confidence 2222111 357888888873
No 197
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=54.99 E-value=1.2e+02 Score=31.60 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCC--CCEEEEecC-----cCHHHHHHHHHHHHhcCCCeEEEE-EEEcC
Q psy13907 80 IDYHRPRIEALIQGG--IDLLAIETL-----PAQEEAMVLAELIKEYPGLKAWIS-FSCKD 132 (698)
Q Consensus 80 ~~~~~~qi~~l~~~G--VD~il~ETi-----~~l~Ea~aa~~a~~~~~~~Pv~iS-ft~~~ 132 (698)
.+.|...++.|.+.| +|.|-++-- +++.+++..++.+.+ .++||+|| +.+..
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~-~g~pi~iTE~dv~~ 194 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFAS-LGLEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHH-cCCceEEEEeecCC
Confidence 357788888888776 577887633 678899999998888 49999998 77654
No 198
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=54.95 E-value=29 Score=38.35 Aligned_cols=60 Identities=23% Similarity=0.425 Sum_probs=42.1
Q ss_pred CCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecC-cCHHHHHHHHHHHHh-cCCC
Q psy13907 45 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKE-YPGL 122 (698)
Q Consensus 45 ~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi-~~l~Ea~aa~~a~~~-~~~~ 122 (698)
.+.+|++++||... +.++++.|+++|||+|++-+- -+.+.+...++.+|+ ++++
T Consensus 95 ~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~ 150 (352)
T PF00478_consen 95 GRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDV 150 (352)
T ss_dssp SCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTS
T ss_pred ccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCc
Confidence 46899999999621 356899999999999999854 344445556666665 4678
Q ss_pred eEEEEE
Q psy13907 123 KAWISF 128 (698)
Q Consensus 123 Pv~iSf 128 (698)
||++-=
T Consensus 151 ~viaGN 156 (352)
T PF00478_consen 151 PVIAGN 156 (352)
T ss_dssp EEEEEE
T ss_pred eEEecc
Confidence 888543
No 199
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=54.68 E-value=2.6e+02 Score=29.97 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHcCCeEEeecCC-CchHHHHHHHhccccCCC
Q psy13907 544 VPSVDTYVPRWLDTGVKYVGGCCR-TNADDMKNVNQVPVKFSI 585 (698)
Q Consensus 544 p~~~a~~~~~~~~~G~~iiGGCCG-TtP~hI~al~~~v~~~~~ 585 (698)
.++-.+.++.+.++|+..|==-++ +++++|+++.+.+.+..|
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p 210 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYP 210 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCC
Confidence 456667788899999776654454 899999999998875444
No 200
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=54.14 E-value=2.3e+02 Score=28.79 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEE--
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV-- 500 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGl-- 500 (698)
+|++...++|+|+++. ...|.. .+++.++ .+.+++++ ..+.+++.++.. .+.+.|++
T Consensus 74 ~~~~~a~~aGA~fivs-p~~~~~----v~~~~~~-~~~~~~~G-----------~~t~~E~~~A~~----~Gad~vk~Fp 132 (206)
T PRK09140 74 EQVDRLADAGGRLIVT-PNTDPE----VIRRAVA-LGMVVMPG-----------VATPTEAFAALR----AGAQALKLFP 132 (206)
T ss_pred HHHHHHHHcCCCEEEC-CCCCHH----HHHHHHH-CCCcEEcc-----------cCCHHHHHHHHH----cCCCEEEECC
Confidence 5777788899999987 223332 2333443 36676644 334566666542 45567777
Q ss_pred -cCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCch-----HHHH
Q psy13907 501 -NCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNA-----DDMK 574 (698)
Q Consensus 501 -NC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP-----~hI~ 574 (698)
+..|++.+..+.+.+..+.|+ +|=.|. ++ +-+.+|++.|+..++..-.-.. +.|+
T Consensus 133 a~~~G~~~l~~l~~~~~~~ipv--vaiGGI-------------~~----~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~ 193 (206)
T PRK09140 133 ASQLGPAGIKALRAVLPPDVPV--FAVGGV-------------TP----ENLAPYLAAGAAGFGLGSALYRPGQSAEEVA 193 (206)
T ss_pred CCCCCHHHHHHHHhhcCCCCeE--EEECCC-------------CH----HHHHHHHHCCCeEEEEehHhcccccChHHHH
Confidence 556666666554433223554 333332 22 3457799999888886666543 5566
Q ss_pred HHHhcc
Q psy13907 575 NVNQVP 580 (698)
Q Consensus 575 al~~~v 580 (698)
+.++.+
T Consensus 194 ~~a~~~ 199 (206)
T PRK09140 194 ERARAF 199 (206)
T ss_pred HHHHHH
Confidence 655443
No 201
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=53.97 E-value=70 Score=33.89 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=55.9
Q ss_pred CeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 46 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 46 ~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
+.+|.+++ ||+.| ..+.++..+ .-.+.+.++|+|.+-+|=-... ...++++-+ .++||+
T Consensus 77 ~~~vv~Dm-Pf~sy-------------~~s~e~av~---nA~rl~ke~GadaVKlEGg~~~---~~~i~~l~~-~GIPV~ 135 (261)
T PF02548_consen 77 NAFVVADM-PFGSY-------------QASPEQAVR---NAGRLMKEAGADAVKLEGGAEI---AETIKALVD-AGIPVM 135 (261)
T ss_dssp SSEEEEE---TTSS-------------TSSHHHHHH---HHHHHHHTTT-SEEEEEBSGGG---HHHHHHHHH-TT--EE
T ss_pred CceEEecC-Ccccc-------------cCCHHHHHH---HHHHHHHhcCCCEEEeccchhH---HHHHHHHHH-CCCcEE
Confidence 57899998 56542 133344333 2334444699999999965533 345555555 699999
Q ss_pred EEEEEcCC------CccCCCCCHHHHHHHH---HhhCCCCceEEEEcCCC
Q psy13907 126 ISFSCKDE------KHTCHGDKFGLIARDV---YAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 126 iSft~~~~------g~l~~G~~~~~~~~~l---~~~~~~~~~aIGiNC~~ 166 (698)
-.+=+.+. |.=.-|.+.+++.+-+ +..+..|+.+|-+-|..
T Consensus 136 gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp 185 (261)
T PF02548_consen 136 GHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVP 185 (261)
T ss_dssp EEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBB
T ss_pred EEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCH
Confidence 98876543 2333566655554432 22234789999999986
No 202
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=53.82 E-value=2.3e+02 Score=28.00 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCEEEec-----ccCCHHHHHHHHHHHHhcCCCeEEEEEEec
Q psy13907 419 DYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEYPGLKAWISFSCK 469 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~E-----Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~ 469 (698)
....++++.+.++|+|.|=+= .++++...-..++.+++..+.|+.+-+.+.
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~ 66 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVE 66 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeC
Confidence 456788999999999998773 334444444455666655567765555554
No 203
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=53.51 E-value=3.2e+02 Score=29.41 Aligned_cols=139 Identities=12% Similarity=-0.033 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCCEEEeccc--------------CCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHHHHHHH
Q psy13907 423 PRIEALIQGGIDLLAIETL--------------PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDV 487 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi--------------~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~ 487 (698)
.-++.+.++||..+.+|-. -+..|...=+.++++. .+.+++|---.+. . ....+.++++..
T Consensus 92 ~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa--~--~~~g~deAI~Ra 167 (285)
T TIGR02317 92 RTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDA--R--AVEGLDAAIERA 167 (285)
T ss_pred HHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCc--c--cccCHHHHHHHH
Confidence 4678899999999999963 3667777777777753 2345666554332 2 234588998887
Q ss_pred HHhCCCCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecC
Q psy13907 488 YAKNPAQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCC 566 (698)
Q Consensus 488 ~~~~~~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCC 566 (698)
.....++.++|-+-+ ...++++.+.+.+. .|+.+-+-.+. +.+..+ .+++.+.|+++|-=-+
T Consensus 168 ~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~--~Pl~~n~~~~~--------~~p~~s-------~~eL~~lGv~~v~~~~ 230 (285)
T TIGR02317 168 KAYVEAGADMIFPEALTSLEEFRQFAKAVK--VPLLANMTEFG--------KTPLFT-------ADELREAGYKMVIYPV 230 (285)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHHhcC--CCEEEEeccCC--------CCCCCC-------HHHHHHcCCcEEEEch
Confidence 543346778888877 56788888877774 67755443321 000112 3556677966654322
Q ss_pred CCchHHHHHHHhcccc
Q psy13907 567 RTNADDMKNVNQVPVK 582 (698)
Q Consensus 567 GTtP~hI~al~~~v~~ 582 (698)
..--.-+++|.+.+..
T Consensus 231 ~~~~aa~~a~~~~~~~ 246 (285)
T TIGR02317 231 TAFRAMNKAAEAVYNE 246 (285)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333445555555443
No 204
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=53.49 E-value=2e+02 Score=29.60 Aligned_cols=124 Identities=11% Similarity=0.027 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCCEEEecccC-C----HHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCce
Q psy13907 422 RPRIEALIQGGIDLLAIETLP-A----QEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 496 (698)
Q Consensus 422 ~~qi~~L~~~GvDlll~ETi~-~----~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~ 496 (698)
.+.++.|.+.|+|.|.+=-+. + ..+. ..++.+++..+.|++++.-+. +++++...+. .+....
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~-~~i~~i~~~~~~pv~~~GGI~---------s~~d~~~~l~--~G~~~v 97 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITASSEGRETML-DVVERVAEEVFIPLTVGGGIR---------SLEDARRLLR--AGADKV 97 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcccccCcccH-HHHHHHHHhCCCCEEEeCCCC---------CHHHHHHHHH--cCCceE
Confidence 345666667899855432222 2 1122 233344444568998776543 3445544442 123333
Q ss_pred EEEEcC-CChhhhHHHHHHhcC-CCCEEEecCC-----CCCcCCCCcccccCCChhhHHHHHHHHHHcCCeE
Q psy13907 497 AVGVNC-LAPHYVESLLTSAGR-DVPLLCCPNS-----GETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKY 561 (698)
Q Consensus 497 ~iGlNC-~~p~~~~~~l~~l~~-~~pl~~yPNa-----G~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~i 561 (698)
.+|--+ ..|+.+..+++.+.. .+.+++-... +... ..| |. ..+.....+.++...+.|+..
T Consensus 98 ~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~--~~~-~~-~~~~~~~~~~~~~l~~~G~d~ 165 (243)
T cd04731 98 SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVY--THG-GR-KPTGLDAVEWAKEVEELGAGE 165 (243)
T ss_pred EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEE--EcC-Cc-eecCCCHHHHHHHHHHCCCCE
Confidence 455445 578888888888763 3334433221 2111 223 42 334556667777777888653
No 205
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=53.46 E-value=3.2e+02 Score=29.60 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecC
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKD 470 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~ 470 (698)
.+++.+.+.|+|.+-+....|+.|+|..+ +-.+.+...+..
T Consensus 242 ~~~~~~~~~~~~~~s~d~~~dl~e~k~~~-------g~~~~i~Gni~p 282 (335)
T cd00717 242 GLLEDLAQLGADVVGLDWRVDLDEARKRL-------GPKVALQGNLDP 282 (335)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHh-------CCCeEEEeCCCh
Confidence 44666778899999888888887754332 334566677654
No 206
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.39 E-value=2.1e+02 Score=29.93 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=71.9
Q ss_pred HHHHHHHhCCCCEEEecccCCH-----HHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceE
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQ-----EEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 497 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~-----~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~ 497 (698)
+.++.+.+.|+|-|++=-+... .+...+.+..++ ...|++++.-+. ++.++.+.+ + .+...
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gGGi~---------s~~d~~~l~-~---~G~~~ 99 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGGGIK---------TLEQAKKIF-S---LGVEK 99 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECCCCC---------CHHHHHHHH-H---CCCCE
Confidence 3455555678887765333222 233344444443 578988665332 456665555 2 34556
Q ss_pred EEEcC---CChhhhHHHHHHhc-CCCCEEEecCCCC--CcC-CCCcccccCCChhhHHHHHHHHHHcCCe-EE-------
Q psy13907 498 VGVNC---LAPHYVESLLTSAG-RDVPLLCCPNSGE--TFD-PGQRIWMNKDSVPSVDTYVPRWLDTGVK-YV------- 562 (698)
Q Consensus 498 iGlNC---~~p~~~~~~l~~l~-~~~pl~~yPNaG~--~~d-~~~g~~~~~~~p~~~a~~~~~~~~~G~~-ii------- 562 (698)
+-+|. ..|+.+..+++... ....+++-...|. .+. ...| |.. .+.....+.++++.+.|+. ++
T Consensus 100 vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~g-w~~-~~~~~~~e~~~~~~~~g~~~ii~~~i~~~ 177 (258)
T PRK01033 100 VSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHN-GTK-KLKKDPLELAKEYEALGAGEILLNSIDRD 177 (258)
T ss_pred EEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcC-Cee-cCCCCHHHHHHHHHHcCCCEEEEEccCCC
Confidence 66777 36777777777765 3455555444331 010 0122 421 1222334444455555522 22
Q ss_pred eecCCCchHHHHHHHhc
Q psy13907 563 GGCCRTNADDMKNVNQV 579 (698)
Q Consensus 563 GGCCGTtP~hI~al~~~ 579 (698)
|...|..-+.|+.+++.
T Consensus 178 G~~~G~d~~~i~~~~~~ 194 (258)
T PRK01033 178 GTMKGYDLELLKSFRNA 194 (258)
T ss_pred CCcCCCCHHHHHHHHhh
Confidence 55566655666666554
No 207
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=53.26 E-value=3.1e+02 Score=29.26 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHH
Q psy13907 410 DSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 489 (698)
Q Consensus 410 ~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~ 489 (698)
+.-|.++++++=.+.++.|.+-+++++++=.- +. .-.++..+|+..+.||+ .++.. +..|++.-+
T Consensus 45 G~ks~e~I~~~~~~i~~~l~~~~ik~lVIACN--TA-Sa~al~~LR~~~~iPVv--GviPa---------ik~A~~~t~- 109 (269)
T COG0796 45 GEKSEEEIRERTLEIVDFLLERGIKALVIACN--TA-SAVALEDLREKFDIPVV--GVIPA---------IKPAVALTR- 109 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEecc--hH-HHHHHHHHHHhCCCCEE--Eeccc---------hHHHHHhcc-
Confidence 45789999999999999999999999766432 21 14577888876788975 22321 334444432
Q ss_pred hCCCCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCccccc-CCChhhHHHHHHHHHHcC-CeEEeecC
Q psy13907 490 KNPAQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMN-KDSVPSVDTYVPRWLDTG-VKYVGGCC 566 (698)
Q Consensus 490 ~~~~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~-~~~p~~~a~~~~~~~~~G-~~iiGGCC 566 (698)
...+..++-++ ..-.....++++++.++-+-..+-.++..-.+.| +.. ...-+.+.++...+...| =.+|=||
T Consensus 110 --~~~IgViaT~~Tvks~~y~~~i~~~~~~~~V~~la~p~lV~lvE~g-~~~~~~~~~~l~~~l~~~~~~~~DtlVLGC- 185 (269)
T COG0796 110 --NGRIGVIATPATVKSNAYRDLIARFAPDCEVESLACPELVPLVEEG-IRGGPVALEVLKEYLPPLQEAGPDTLVLGC- 185 (269)
T ss_pred --CCeEEEEeccchhccHHHHHHHHHhCCCCEEEEecCcchHHHHhcc-cccCHHHHHHHHHHhcchhccCCCEEEEeC-
Confidence 24577889999 5677888899988867766666544432222233 311 112223344444455556 3456667
Q ss_pred CCchHHHHH
Q psy13907 567 RTNADDMKN 575 (698)
Q Consensus 567 GTtP~hI~a 575 (698)
|.--+++.
T Consensus 186 -THyPll~~ 193 (269)
T COG0796 186 -THYPLLKP 193 (269)
T ss_pred -cCcHHHHH
Confidence 44444443
No 208
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=53.25 E-value=2.9e+02 Score=29.83 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=33.2
Q ss_pred CCChhhHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHhccc
Q psy13907 541 KDSVPSVDTYVPRWLDTGVKYVGGCCR----TNADDMKNVNQVPV 581 (698)
Q Consensus 541 ~~~p~~~a~~~~~~~~~G~~iiGGCCG----TtP~hI~al~~~v~ 581 (698)
..++++..+.+++.++.|.-|++--|| |.++.++++.++++
T Consensus 281 ~gt~e~i~~~~~~~l~~g~~Il~~Gc~i~~~tp~env~a~v~a~~ 325 (326)
T cd03307 281 NGTPEDVKAEARKCLEDGVDILAPGCGIAPRTPLANLKAMVEARK 325 (326)
T ss_pred CCCHHHHHHHHHHHHHccCCEecCcCCCCCCCCHHHHHHHHHHHh
Confidence 568899999999999987666665565 67799999988875
No 209
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=53.23 E-value=2.1e+02 Score=29.91 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCC-CCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 82 YHRPRIEALIQGG-IDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 82 ~~~~qi~~l~~~G-VD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
.|.+.++.+++.| +|++=+|--.+-+.++.++..+++ .+.++++|+.- -..+.+-..+.+.+..+. ..++|.+
T Consensus 96 ~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H~--f~~tP~~~~l~~~~~~~~---~~gaDiv 169 (253)
T PRK02412 96 EYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHE-HGVKVVLSYHD--FEKTPPKEEIVERLRKME---SLGADIV 169 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHH-cCCEEEEeeCC--CCCCcCHHHHHHHHHHHH---HhCCCEE
Confidence 3344455566677 999999965555556667777776 57899998852 223333333555555553 3567777
Q ss_pred EEcCC
Q psy13907 161 GVNCL 165 (698)
Q Consensus 161 GiNC~ 165 (698)
=+-+.
T Consensus 170 Kia~~ 174 (253)
T PRK02412 170 KIAVM 174 (253)
T ss_pred EEEec
Confidence 77664
No 210
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=53.04 E-value=99 Score=37.10 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh----cCCCeEEEEEEec
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE----YPGLKAWISFSCK 469 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~----~~~~Pv~iS~t~~ 469 (698)
++--+|++.|.++|+|++=+ |+++..+|++.-.--++ -...|++.-+-++
T Consensus 110 eatv~Qi~~l~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 163 (733)
T PLN02925 110 EATVDQVMRIADKGADIVRI-TVQGKKEADACFEIKNTLVQKGYNIPLVADIHFA 163 (733)
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 55668999999999999987 99999998876554443 2457887766553
No 211
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.86 E-value=58 Score=34.89 Aligned_cols=62 Identities=6% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 86 RIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 86 qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
|++..++.|+|.|++.+| +.+|++.+++.++. ..| +.. ..|-+++.+.+... .|+|.|.+-.
T Consensus 206 ea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~~--~~~--lea--------SGGI~~~ni~~yA~----tGVD~Is~Ga 267 (281)
T PRK06106 206 QLEEALELGVDAVLLDNM-TPDTLREAVAIVAG--RAI--TEA--------SGRITPETAPAIAA----SGVDLISVGW 267 (281)
T ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhCC--Cce--EEE--------ECCCCHHHHHHHHh----cCCCEEEeCh
Confidence 444455789999999997 56889988887653 233 222 24677777766543 6889888766
No 212
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.63 E-value=3.1e+02 Score=29.08 Aligned_cols=130 Identities=22% Similarity=0.290 Sum_probs=73.0
Q ss_pred HHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCC
Q psy13907 325 VRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEY 404 (698)
Q Consensus 325 l~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey 404 (698)
+++|.|.|... +.+|.......++.+.++..+.....++.||+.- ..|-+++.-. + +.+|
T Consensus 83 ~~~g~~~i~i~-~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G--------------~~v~~~i~~~---f--~~~~ 142 (274)
T cd07938 83 LAAGVDEVAVF-VSASETFSQKNINCSIAESLERFEPVAELAKAAG--------------LRVRGYVSTA---F--GCPY 142 (274)
T ss_pred HHcCcCEEEEE-EecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--------------CeEEEEEEeE---e--cCCC
Confidence 47788876544 3455544444456766555555555555555432 1233322211 0 0012
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcH
Q psy13907 405 RGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKF 480 (698)
Q Consensus 405 ~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l 480 (698)
.+ ..+. +++.+.++.+.+.|+|.|-+- |+ ....++...+..+++. ++ +-|++-+.+ ..|-.+
T Consensus 143 ~~----~~~~----~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hn----d~GlA~ 208 (274)
T cd07938 143 EG----EVPP----ERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD--EKLALHFHD----TRGQAL 208 (274)
T ss_pred CC----CCCH----HHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC--CeEEEEECC----CCChHH
Confidence 22 2344 445566666778899988665 43 4566777777777753 23 456777776 567767
Q ss_pred HHHHHHHH
Q psy13907 481 GLIARDVY 488 (698)
Q Consensus 481 ~~~v~~~~ 488 (698)
..++.++.
T Consensus 209 AN~laA~~ 216 (274)
T cd07938 209 ANILAALE 216 (274)
T ss_pred HHHHHHHH
Confidence 77777664
No 213
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=52.36 E-value=2.7e+02 Score=30.57 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCC--CEEEec-ccCCHHHHHHHHHHHHh-cCCCeEEE
Q psy13907 421 HRPRIEALIQGGI--DLLAIE-TLPAQEEAMVLAELIKE-YPGLKAWI 464 (698)
Q Consensus 421 y~~qi~~L~~~Gv--Dlll~E-Ti~~~~Eakaa~~a~~~-~~~~Pv~i 464 (698)
+.++++.|+++|+ |+|.+- |-++...+...+..+++ +++.||++
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 4588999999965 999985 55666677777777775 44577765
No 214
>PLN02417 dihydrodipicolinate synthase
Probab=52.29 E-value=1.7e+02 Score=31.01 Aligned_cols=103 Identities=10% Similarity=-0.025 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEec-c-----cCCHHHHHHHHHHHHhc--CCCeEEEEEEecCCCccCCCCcHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAIE-T-----LPAQEEAMVLAELIKEY--PGLKAWISFSCKDEKHTCHGDKFGL 482 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~E-T-----i~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~~g~l~~G~~l~~ 482 (698)
.+++ +.++++++.+++.|||.|++- | .-+..|-+.+++.+.+. .++||++... ..+..+
T Consensus 18 ~iD~----~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~ 84 (280)
T PLN02417 18 RFDL----EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG---------SNSTRE 84 (280)
T ss_pred CcCH----HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC---------CccHHH
Confidence 4666 446778888899999998762 3 23566777777655542 3478886653 334566
Q ss_pred HHHHHHHhCCCCceEEEEcC-----CChhhhHHHHHHhc-CCCCEEEecCC
Q psy13907 483 IARDVYAKNPAQLVAVGVNC-----LAPHYVESLLTSAG-RDVPLLCCPNS 527 (698)
Q Consensus 483 ~v~~~~~~~~~~~~~iGlNC-----~~p~~~~~~l~~l~-~~~pl~~yPNa 527 (698)
+++........+++++.+-= .+.+.+..+.+.+. .. |+++|=|-
T Consensus 85 ~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P 134 (280)
T PLN02417 85 AIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVP 134 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEECh
Confidence 77665433334555444321 23466777777775 55 99999553
No 215
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=52.19 E-value=2.7e+02 Score=30.78 Aligned_cols=138 Identities=19% Similarity=0.124 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEecc---cCCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCC
Q psy13907 418 IDYHRPRIEALIQGGIDLLAIET---LPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPA 493 (698)
Q Consensus 418 ~~~y~~qi~~L~~~GvDlll~ET---i~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~ 493 (698)
.+.-.+.+++-.+.|+.+-+=.- +-+. +.+.....+++. ++.|+++++-+.. ..|.+..++.+++.. ..+
T Consensus 76 ~~in~~La~~a~~~G~~~~~Gs~~~~~~~~-~~~~~~~~vr~~~p~~p~~aNl~~~~----~~~~~~~~~~~~~~~-~~a 149 (352)
T PRK05437 76 KEINRKLAEAAEELGIAMGVGSQRAALKDP-ELADSFSVVRKVAPDGLLFANLGAVQ----LYGYGVEEAQRAVEM-IEA 149 (352)
T ss_pred HHHHHHHHHHHHHcCCCeEecccHhhccCh-hhHHHHHHHHHHCCCceEEeecCccc----cCCCCHHHHHHHHHh-cCC
Confidence 34446667777778876654221 1122 366677777865 4899999997754 236666655555432 246
Q ss_pred CceEEEEcCC-------ChhhhH---HHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeE
Q psy13907 494 QLVAVGVNCL-------APHYVE---SLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKY 561 (698)
Q Consensus 494 ~~~~iGlNC~-------~p~~~~---~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~i 561 (698)
....+++||. +..... ..++.+. .+.||++.-+.. | .+ .+.++.+.+.|+..
T Consensus 150 dal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~-------g-----~s----~~~a~~l~~~Gvd~ 213 (352)
T PRK05437 150 DALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGF-------G-----IS----KETAKRLADAGVKA 213 (352)
T ss_pred CcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCC-------C-----Cc----HHHHHHHHHcCCCE
Confidence 6778899982 222333 4455554 489999875431 1 12 34556677888554
Q ss_pred --EeecCCCchHHHHHHH
Q psy13907 562 --VGGCCRTNADDMKNVN 577 (698)
Q Consensus 562 --iGGCCGTtP~hI~al~ 577 (698)
|+|-+||+-..|...+
T Consensus 214 I~Vsg~GGt~~~~ie~~R 231 (352)
T PRK05437 214 IDVAGAGGTSWAAIENYR 231 (352)
T ss_pred EEECCCCCCCccchhhhh
Confidence 7888888766555444
No 216
>PRK15063 isocitrate lyase; Provisional
Probab=51.97 E-value=17 Score=41.03 Aligned_cols=81 Identities=22% Similarity=0.196 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCCEEEecc-cCCHHHHHHHHHHHHhcCCCeEEE-EEEecCCCccCCCCcHHHHHHHHHHhCCCCceEE
Q psy13907 421 HRPRIEALIQGGIDLLAIET-LPAQEEAMVLAELIKEYPGLKAWI-SFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 498 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ET-i~~~~Eakaa~~a~~~~~~~Pv~i-S~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~i 498 (698)
--++..++.+ |+|+|++|| .+|+.|++...++++. ..|.-+ ...+.. + | ..
T Consensus 267 AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~--~~P~~~layn~sP-----s----------f---------nW 319 (428)
T PRK15063 267 AIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA--KFPGKLLAYNCSP-----S----------F---------NW 319 (428)
T ss_pred HHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc--cCccceeecCCCC-----C----------c---------cc
Confidence 4467778888 999999998 8999999999998874 234211 111100 0 0 00
Q ss_pred EEcCCChhhhHHHHHHhc-CCCCEEEecCCCC
Q psy13907 499 GVNCLAPHYVESLLTSAG-RDVPLLCCPNSGE 529 (698)
Q Consensus 499 GlNC~~p~~~~~~l~~l~-~~~pl~~yPNaG~ 529 (698)
--| ..++.+..+.++|. ...-+.+||++|.
T Consensus 320 ~~~-~~~~~~~~f~~eL~~~Gy~~~~~~la~~ 350 (428)
T PRK15063 320 KKN-LDDATIAKFQRELGAMGYKFQFITLAGF 350 (428)
T ss_pred ccc-cCHHHHHHHHHHHHHcCceEEEechHHH
Confidence 012 46677888888877 5666788888874
No 217
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=51.87 E-value=1.3e+02 Score=30.83 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCEEEEec-CcCH------HHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCC---HHHHHHHHHhhCCC
Q psy13907 86 RIEALIQGGIDLLAIET-LPAQ------EEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDK---FGLIARDVYAKNPA 155 (698)
Q Consensus 86 qi~~l~~~GVD~il~ET-i~~l------~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~---~~~~~~~l~~~~~~ 155 (698)
+++..++.|+|.+.+.- +.+. .+++.+.+++++ .++|+++.... ++.++....+ +..+++... ..
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~-~g~~~iie~~~-~g~~~~~~~~~~~i~~~~~~a~---~~ 155 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHK-YGLPLIAWMYP-RGPAVKNEKDPDLIAYAARIGA---EL 155 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHH-cCCCEEEEEec-cCCcccCccCHHHHHHHHHHHH---HH
Confidence 56777789998775543 2232 256666666666 48999986533 2222222122 333222222 36
Q ss_pred CceEEEEcCCC
Q psy13907 156 QLVAVGVNCLA 166 (698)
Q Consensus 156 ~~~aIGiNC~~ 166 (698)
++|.|+++.+.
T Consensus 156 GaD~Ik~~~~~ 166 (235)
T cd00958 156 GADIVKTKYTG 166 (235)
T ss_pred CCCEEEecCCC
Confidence 89999998654
No 218
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=51.70 E-value=3.2e+02 Score=28.95 Aligned_cols=142 Identities=11% Similarity=0.103 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEe-----c-ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHH
Q psy13907 411 STTPQELIDYHRPRIEALIQGGIDLLAI-----E-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIA 484 (698)
Q Consensus 411 ~~t~del~~~y~~qi~~L~~~GvDlll~-----E-Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v 484 (698)
.++++ .++++++.+.+.|||.|++ | ..-+..|-+.+++.+.+..+ +|++... +.++.+++
T Consensus 16 ~iD~~----~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg---------~~~~~~ai 81 (279)
T cd00953 16 KIDKE----KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG---------SLNLEESI 81 (279)
T ss_pred CcCHH----HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC---------cCCHHHHH
Confidence 35554 4556678888899999876 3 23456777777776665444 4543321 24466777
Q ss_pred HHHHHhCCCCceEEEEcC---C---ChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcC
Q psy13907 485 RDVYAKNPAQLVAVGVNC---L---APHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTG 558 (698)
Q Consensus 485 ~~~~~~~~~~~~~iGlNC---~---~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G 558 (698)
+........+.+++.+=- . .++.+..+.+.+..+.|+++|=|-+ ..| . +.+++.+. +..+..
T Consensus 82 ~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~P~-----~tg-~--~l~~~~l~----~L~~~~ 149 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNYPK-----ATG-Y--DINARMAK----EIKKAG 149 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeCcc-----ccC-C--CCCHHHHH----HHHhcC
Confidence 766543335556655522 1 2456666666654489999995532 122 1 34555443 344433
Q ss_pred CeEEee-cCCCchHHHHHHHh
Q psy13907 559 VKYVGG-CCRTNADDMKNVNQ 578 (698)
Q Consensus 559 ~~iiGG-CCGTtP~hI~al~~ 578 (698)
-||+|= -+....+++.++.+
T Consensus 150 p~vvgiK~s~~d~~~~~~~~~ 170 (279)
T cd00953 150 GDIIGVKDTNEDISHMLEYKR 170 (279)
T ss_pred CCEEEEEeCccCHHHHHHHHH
Confidence 455551 12234566666644
No 219
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=51.61 E-value=2.3e+02 Score=28.80 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=59.6
Q ss_pred HHHHHHHhCCCCEEEecccCCH-----HHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceE
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQ-----EEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 497 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~-----~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~ 497 (698)
+.++.+.+.|+|.|.+=+.... .+.. .+..+++..++|+|+..-+.+ ++++-+.+ + .+.....
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~-~i~~i~~~~~~pv~~~GgI~~---------~e~~~~~~-~-~Gad~vv 100 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLE-LIEEIVKAVGIPVQVGGGIRS---------LEDIERLL-D-LGVSRVI 100 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHH-HHHHHHHhcCCCEEEeCCcCC---------HHHHHHHH-H-cCCCEEE
Confidence 4455555679988866433322 1222 333344435689987654433 55554444 2 1223333
Q ss_pred EEEcC-CChhhhHHHHHHhcC-CCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe
Q psy13907 498 VGVNC-LAPHYVESLLTSAGR-DVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK 560 (698)
Q Consensus 498 iGlNC-~~p~~~~~~l~~l~~-~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ 560 (698)
+|--. ..|+.+..+.+.+.. ...+++.-..|... ..+ |. ..++....+.++.|.+.|+.
T Consensus 101 igs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 101 IGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVA--TKG-WL-ETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred ECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEE--ECC-Ce-eecCCCHHHHHHHHHHcCCC
Confidence 44444 467778788777652 33333222122111 112 31 22333445666667776644
No 220
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=51.23 E-value=66 Score=31.81 Aligned_cols=55 Identities=27% Similarity=0.296 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcc
Q psy13907 80 IDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHT 136 (698)
Q Consensus 80 ~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l 136 (698)
...|..|++++-+.|==+|.|=|-.+-..+..+++.+++ .++.+ |.||=+++|++
T Consensus 96 d~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~-~gm~v-I~ltG~~GG~~ 150 (176)
T COG0279 96 DEVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKE-KGMTV-IALTGKDGGKL 150 (176)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH-cCCEE-EEEecCCCccc
Confidence 457889999998888556778899999999999999998 46554 47776666654
No 221
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=51.04 E-value=2.8e+02 Score=31.83 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHhCCCCEEEEe-cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCC
Q psy13907 87 IEALIQGGIDLLAIE-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL 165 (698)
Q Consensus 87 i~~l~~~GVD~il~E-Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~ 165 (698)
++...+.|+|.|-+= .+++...++.+++++++ .++.+-+++++..+.+ .+++..++.+......+++.|.+-=+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~-~G~~v~~~i~~t~~p~----~~~~~~~~~a~~l~~~Gad~I~i~Dt 176 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKK-AGGHAQVAISYTTSPV----HTIDYFVKLAKEMQEMGADSICIKDM 176 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHH-cCCeEEEEEEeecCCC----CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 344557899976544 55777888888999988 4666555554433321 33333333222112356776555333
Q ss_pred ChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 166 APHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 166 ~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
. .-+ -|.++..+++.+++.
T Consensus 177 ~---------------G~l-----------~P~~v~~lv~alk~~ 195 (448)
T PRK12331 177 A---------------GIL-----------TPYVAYELVKRIKEA 195 (448)
T ss_pred C---------------CCC-----------CHHHHHHHHHHHHHh
Confidence 2 122 799999999999875
No 222
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=51.04 E-value=2.4e+02 Score=31.15 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=75.0
Q ss_pred HHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCC
Q psy13907 322 RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDG 401 (698)
Q Consensus 322 ~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~ 401 (698)
+..+++|+|+|.... .+|...+...++++.+++-+....+++.||+. + ..|.. ++. +
T Consensus 79 ~~a~~~g~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~------------g--~~v~~--~~e-----d- 135 (365)
T TIGR02660 79 EAAARCGVDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR------------G--LFVSV--GGE-----D- 135 (365)
T ss_pred HHHHcCCcCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC------------C--CEEEE--eec-----C-
Confidence 345678999876664 45555555556777766666666666655542 1 22332 221 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCC
Q psy13907 402 SEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGD 478 (698)
Q Consensus 402 ~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~ 478 (698)
.+ ..+. +++.+.++.+.+.|+|.|-+= |+ ....+....+..+++..+.| +++-+.+ -.|-
T Consensus 136 ---~~----r~~~----~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~--l~~H~HN----d~Gl 198 (365)
T TIGR02660 136 ---AS----RADP----DFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLP--LEMHAHN----DLGM 198 (365)
T ss_pred ---CC----CCCH----HHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCe--EEEEecC----CCCh
Confidence 11 1344 445555556677899987543 43 34667777777777643444 6887776 4577
Q ss_pred cHHHHHHHHH
Q psy13907 479 KFGLIARDVY 488 (698)
Q Consensus 479 ~l~~~v~~~~ 488 (698)
.+..++.++.
T Consensus 199 A~ANalaA~~ 208 (365)
T TIGR02660 199 ATANTLAAVR 208 (365)
T ss_pred HHHHHHHHHH
Confidence 7777777774
No 223
>PRK07094 biotin synthase; Provisional
Probab=50.88 E-value=2.6e+02 Score=30.07 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCEEE--EecCc-----------CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh
Q psy13907 85 PRIEALIQGGIDLLA--IETLP-----------AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 151 (698)
Q Consensus 85 ~qi~~l~~~GVD~il--~ETi~-----------~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~ 151 (698)
++++.|.++|+|.+. +||.. +.++...+++.+++ .+.++...|.+- ..|++.++..+.+..
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~-~Gi~v~~~~iiG-----lpget~ed~~~~l~~ 203 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKE-LGYEVGSGFMVG-----LPGQTLEDLADDILF 203 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHH-cCCeecceEEEE-----CCCCCHHHHHHHHHH
Confidence 445555556666432 35542 34555555555555 355555455442 124444544444322
Q ss_pred hCCCCceEEEEcCCC
Q psy13907 152 KNPAQLVAVGVNCLA 166 (698)
Q Consensus 152 ~~~~~~~aIGiNC~~ 166 (698)
....+++.+++|--.
T Consensus 204 l~~l~~~~v~~~~~~ 218 (323)
T PRK07094 204 LKELDLDMIGIGPFI 218 (323)
T ss_pred HHhCCCCeeeeeccc
Confidence 223455555555533
No 224
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=50.80 E-value=1e+02 Score=31.45 Aligned_cols=138 Identities=22% Similarity=0.263 Sum_probs=79.7
Q ss_pred cChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEec
Q psy13907 312 SNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSL 391 (698)
Q Consensus 312 ~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsi 391 (698)
-.++.++...+...++|.|+|... +..|.......++.+.++.-+....+++.||+. + ..| ++
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~------------g--~~v--~~ 126 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIF-ISVSDLHIRKNLNKSREEALERIEEAVKYAKEL------------G--YEV--AF 126 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEE-EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT------------T--SEE--EE
T ss_pred ehHHHHHHHHHhhHhccCCEEEec-CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc------------C--Cce--Ee
Confidence 456667776777889999998766 445554444445664444444444444444332 1 223 33
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhcCCCeEEEEEEe
Q psy13907 392 GSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEYPGLKAWISFSC 468 (698)
Q Consensus 392 GP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~~~~Pv~iS~t~ 468 (698)
++.- .. ..+.++ +.+.++.+.+.|+|.|.+- |+ ....+..-.+..+++.... +-|.|-+
T Consensus 127 ~~~~---------~~----~~~~~~----~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~l~~H~ 188 (237)
T PF00682_consen 127 GCED---------AS----RTDPEE----LLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD-IPLGFHA 188 (237)
T ss_dssp EETT---------TG----GSSHHH----HHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT-SEEEEEE
T ss_pred Cccc---------cc----cccHHH----HHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC-CeEEEEe
Confidence 3321 11 134444 4455666777799988665 54 3456666777777753221 5557877
Q ss_pred cCCCccCCCCcHHHHHHHHH
Q psy13907 469 KDEKHTCHGDKFGLIARDVY 488 (698)
Q Consensus 469 ~~~g~l~~G~~l~~~v~~~~ 488 (698)
.+ ..|.-+..++.++.
T Consensus 189 Hn----d~Gla~An~laA~~ 204 (237)
T PF00682_consen 189 HN----DLGLAVANALAALE 204 (237)
T ss_dssp BB----TTS-HHHHHHHHHH
T ss_pred cC----CccchhHHHHHHHH
Confidence 77 46777888888775
No 225
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=50.78 E-value=2.7e+02 Score=30.10 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=77.0
Q ss_pred hcccChHHH-----------HHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy13907 309 FLHSNRQAV-----------IDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRD 377 (698)
Q Consensus 309 ~~l~~Pe~V-----------~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~ 377 (698)
+..++||.+ .+..+.++++|+|+|.... ++. . -+|.+..+++..-..+-..+++.+.
T Consensus 165 ~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d--~~~----~--~isp~~f~e~~~P~~k~i~~~i~~~---- 232 (343)
T PF01208_consen 165 DLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFD--SSG----S--LISPEMFEEFILPYLKKIIDAIKEA---- 232 (343)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE--TTG----G--GS-HHHHHHHTHHHHHHHHHHHHHH----
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--ccc----C--CCCHHHHHHHHHHHHHHHHHHHHHh----
Confidence 345677644 4556778899999997766 222 1 1456666666665555444444442
Q ss_pred CccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc
Q psy13907 378 PAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY 457 (698)
Q Consensus 378 ~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~ 457 (698)
+....+.=+.|-+ ...++.+.+.|+|+|-++.-.|+.+++. ++
T Consensus 233 ----g~~~~~lH~cG~~---------------------------~~~~~~l~~~g~d~~~~~~~~~~~~~~~------~~ 275 (343)
T PF01208_consen 233 ----GKDPVILHICGNT---------------------------TPILDDLADLGADVLSVDEKVDLAEAKR------KL 275 (343)
T ss_dssp ----ETE-EEEEETTHG----------------------------GGHHHHHTSS-SEEEE-TTS-HHHHHH------HH
T ss_pred ----CCCceEEEECCch---------------------------HHHHHHHHhcCCCEEEEcCCCCHHHHHH------Hh
Confidence 1102333333332 2345667789999999987777756544 32
Q ss_pred CCCeEEEEEEecCCCccCCCC--cHHHHHHHHHHh--CCCCceEEEEcC-C----ChhhhHHHHHH
Q psy13907 458 PGLKAWISFSCKDEKHTCHGD--KFGLIARDVYAK--NPAQLVAVGVNC-L----APHYVESLLTS 514 (698)
Q Consensus 458 ~~~Pv~iS~t~~~~g~l~~G~--~l~~~v~~~~~~--~~~~~~~iGlNC-~----~p~~~~~~l~~ 514 (698)
.+ -+.+-..++....|. |+ .+.+.+..+.+. ...+-..++..| + .++.++.+++.
T Consensus 276 ~~-~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a 339 (343)
T PF01208_consen 276 GD-KIVLMGNIDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEA 339 (343)
T ss_dssp TT-SSEEEEEB-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHH
T ss_pred CC-CeEEECCCCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHH
Confidence 22 223355554434455 54 333444444432 224445677778 3 34445555443
No 226
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=50.74 E-value=3.3e+02 Score=29.70 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=18.0
Q ss_pred HHHHHhCCCCEEEecccCCHHHHH
Q psy13907 425 IEALIQGGIDLLAIETLPAQEEAM 448 (698)
Q Consensus 425 i~~L~~~GvDlll~ETi~~~~Eak 448 (698)
++.+.+.|+|.|-+.-..|+.|++
T Consensus 253 ~~~~~~~~~~~is~d~~~dl~~~k 276 (346)
T PRK00115 253 LEAMAETGADVVGLDWTVDLAEAR 276 (346)
T ss_pred HHHHHhcCCCEEeeCCCCCHHHHH
Confidence 344667899999888878877654
No 227
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=50.67 E-value=2.7e+02 Score=29.07 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=66.5
Q ss_pred HHHHHHHhCCCCEEEeccc-------CCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHH---HHHHHHHHhCC
Q psy13907 423 PRIEALIQGGIDLLAIETL-------PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG---LIARDVYAKNP 492 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi-------~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~---~~v~~~~~~~~ 492 (698)
..++.+++.|+|.+-+.-- -...+++++..++++ .+.|++|-.. .+...+.. .+.. ++++... .
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~-~g~~liv~~~-~~Gvh~~~-~~~~~~~~~~~~a~---~ 167 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDD-WGVPLLAMMY-PRGPHIDD-RDPELVAHAARLGA---E 167 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHH-cCCCEEEEEe-ccCccccc-ccHHHHHHHHHHHH---H
Confidence 3566778899987655322 122345555555555 3788887433 22222211 2222 2222222 2
Q ss_pred CCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCC
Q psy13907 493 AQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCR 567 (698)
Q Consensus 493 ~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCG 567 (698)
.+++.|++.- .+++.++.+.+. ...|+.+ +|... ..+.+++.+.+.+.++.|+. |=++|
T Consensus 168 ~GADyikt~~~~~~~~l~~~~~~--~~iPVva---~GGi~---------~~~~~~~~~~i~~~~~aGa~--Gia~g 227 (258)
T TIGR01949 168 LGADIVKTPYTGDIDSFRDVVKG--CPAPVVV---AGGPK---------TNSDREFLQMIKDAMEAGAA--GVAVG 227 (258)
T ss_pred HCCCEEeccCCCCHHHHHHHHHh--CCCcEEE---ecCCC---------CCCHHHHHHHHHHHHHcCCc--EEehh
Confidence 5667777764 234555555443 3577754 23222 22456778888888999987 55666
No 228
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=50.61 E-value=1.8e+02 Score=29.50 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccC------CCCCHHHHHHHHHhhCCCCce
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTC------HGDKFGLIARDVYAKNPAQLV 158 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~------~G~~~~~~~~~l~~~~~~~~~ 158 (698)
++++.+.+.|+|.+++=|.. +.+...+.++++++..-++++|+.++...... ...++.+.++.+. ..+++
T Consensus 86 e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ga~ 161 (234)
T cd04732 86 EDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFE---ELGVK 161 (234)
T ss_pred HHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHH---HcCCC
Confidence 45666667899999875543 33444455555665444888898775532222 2445666666654 25666
Q ss_pred EEEEc
Q psy13907 159 AVGVN 163 (698)
Q Consensus 159 aIGiN 163 (698)
.+-+.
T Consensus 162 ~iii~ 166 (234)
T cd04732 162 AIIYT 166 (234)
T ss_pred EEEEE
Confidence 66555
No 229
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=50.49 E-value=2.9e+02 Score=30.55 Aligned_cols=173 Identities=15% Similarity=0.156 Sum_probs=91.4
Q ss_pred HHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccC-CCCC--CCCHHHHHHHHHHHHHHHHhCCCCEEEEe----
Q psy13907 29 KEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRG-DYID--STTPQELIDYHRPRIEALIQGGIDLLAIE---- 101 (698)
Q Consensus 29 reA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g-~y~~--~~s~eel~~~~~~qi~~l~~~GVD~il~E---- 101 (698)
.+++.+|..+.++ +..+.|.-. ||+--+. ++|.+ .|.+ ..-..++..+-++.++.+.+.||++|-+-
T Consensus 97 ~~~~~~~~~~~~~--~~~VKv~iT-GP~tL~~---~~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l 170 (344)
T PRK06052 97 EEVAKEYKEETGE--TLEVRVCVT-GPTELYL---QEFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSL 170 (344)
T ss_pred HHHHHHHHHhhCC--CCCeEEEec-CHHHHHH---HHcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCccc
Confidence 3444455443321 123444332 6774322 24444 4532 11135677788888999999999998653
Q ss_pred -cCc----CHHHHHHHHHHH-----HhcCCCeEEEEEEEcCCCccCCCCCHHHHH-HHHHhhCCCCceEEEEcCC-Chhh
Q psy13907 102 -TLP----AQEEAMVLAELI-----KEYPGLKAWISFSCKDEKHTCHGDKFGLIA-RDVYAKNPAQLVAVGVNCL-APHY 169 (698)
Q Consensus 102 -Ti~----~l~Ea~aa~~a~-----~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~-~~l~~~~~~~~~aIGiNC~-~p~~ 169 (698)
|-+ +.+++..|+..+ .+-.+.++.+.+ .+. ..+. .-.+++.+|+-++ .|+.
T Consensus 171 ~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~---------------~l~~~~i~--~~~~idvi~~E~A~~~~~ 233 (344)
T PRK06052 171 GINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS---------------PLYYELIC--ETPGINVIGVESAATPSY 233 (344)
T ss_pred ccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh---------------HhhHHHHh--cCCCCCEEeeeccCChHH
Confidence 222 667777777776 321234444433 122 2221 1234888888886 4433
Q ss_pred hHHHHHHh--Hhhcccc--cc-cc--c--------------c---------cccCCChHHHHHHHHHHHHcCCCCCCCcC
Q psy13907 170 VESLLTSA--EVEGQSL--EL-PV--N--------------N---------TLISRKPIQLLSIELELAAAGKMPSGTTQ 219 (698)
Q Consensus 170 i~~~l~~~--~~~~~~~--~~-p~--~--------------~---------~~~~~gP~~~~~~~~~l~~~~~~~~~~~~ 219 (698)
+ .+++.. +..++.+ ++ =+ + | -..-+.+++|...+++..+.
T Consensus 234 L-~~l~~~~~e~~dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~--------- 303 (344)
T PRK06052 234 L-DLIDKKVLEDTDTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSI--------- 303 (344)
T ss_pred H-HHHhhhhhhhcCCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHh---------
Confidence 3 333221 1112221 11 11 1 0 23357889999999987765
Q ss_pred CCcCccEEeecCCCCc
Q psy13907 220 IPFEAPLKAKPNRSLF 235 (698)
Q Consensus 220 ~~~~~~~~~~pnag~p 235 (698)
+|- .-+++-|.=||=
T Consensus 304 i~~-e~lwVNPDCGLK 318 (344)
T PRK06052 304 FGD-RIKYVGPDCGLG 318 (344)
T ss_pred CCh-hhEEECCCCCCC
Confidence 222 348899998874
No 230
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=50.45 E-value=5.1e+02 Score=30.89 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=60.2
Q ss_pred HHHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEE--EEEEecCCCccCCCCcHH---HHHHHHHHhCCCCceE
Q psy13907 424 RIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAW--ISFSCKDEKHTCHGDKFG---LIARDVYAKNPAQLVA 497 (698)
Q Consensus 424 qi~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~Pv~--iS~t~~~~g~l~~G~~l~---~~v~~~~~~~~~~~~~ 497 (698)
-++...+.|+|++ ++-.+.++.+++.+++++++. ++-+. |++|... -.++. +.++.+.+ .++..
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p------~~~~~~~~~~a~~l~~---~Gad~ 171 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKV-GAHAQGTLSYTTSP------VHTLQTWVDLAKQLED---MGVDS 171 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCC------ccCHHHHHHHHHHHHH---cCCCE
Confidence 3555678999986 556778899999999999984 55543 4454422 11333 44444432 44555
Q ss_pred EEEcC----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 498 VGVNC----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 498 iGlNC----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
|.+-= ..|..+..+++.+. .+.||.+|-.
T Consensus 172 i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~H 206 (593)
T PRK14040 172 LCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCH 206 (593)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 55532 36899999999887 4577776654
No 231
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=50.26 E-value=3.2e+02 Score=28.47 Aligned_cols=100 Identities=8% Similarity=-0.037 Sum_probs=54.5
Q ss_pred CCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-C----------------ChhhhHHHHHHhc-CCCC
Q psy13907 459 GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-L----------------APHYVESLLTSAG-RDVP 520 (698)
Q Consensus 459 ~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC-~----------------~p~~~~~~l~~l~-~~~p 520 (698)
..|+++|+- |.++++.++.... .....+.|-+|| | .|+.+..+++.+. .+.|
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~-v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~P 136 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLT-IAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKP 136 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHH-HhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCc
Confidence 458888874 3344444443321 124578899999 5 4555666777766 6788
Q ss_pred EEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCc---hHHHHHHHhccc
Q psy13907 521 LLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTN---ADDMKNVNQVPV 581 (698)
Q Consensus 521 l~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTt---P~hI~al~~~v~ 581 (698)
|++.--.|.. .....+.++...+.|+..|-=-++.. +.+.+.|++..+
T Consensus 137 VsvKiR~~~~-------------~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 137 IFVKIRGNCI-------------PLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE 187 (231)
T ss_pred EEEEeCCCCC-------------cchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH
Confidence 8887554321 12334555566677755442223332 134555544443
No 232
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=50.22 E-value=1.5e+02 Score=33.86 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCCEEEEecC-cCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceE
Q psy13907 82 YHRPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVA 159 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi-~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~a 159 (698)
...++++.|+++|+|+|.+-+- .+-.-+...++.+++. +++|+++.. ..+.+++...+. .|+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~----------v~t~~~a~~l~~----aGad~ 289 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN----------VATAEQAKALID----AGADG 289 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe----------CCCHHHHHHHHH----hCCCE
Confidence 3456889999999999998763 2334455666667654 688988722 445555555442 68888
Q ss_pred EEE
Q psy13907 160 VGV 162 (698)
Q Consensus 160 IGi 162 (698)
|.+
T Consensus 290 i~v 292 (450)
T TIGR01302 290 LRV 292 (450)
T ss_pred EEE
Confidence 866
No 233
>KOG2949|consensus
Probab=50.13 E-value=3.1e+02 Score=28.55 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=63.9
Q ss_pred CeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 46 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 46 ~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
+.++.|++ |+|.|- ....+.-+.-++.+.++|+|.+=+|-=++. -++ +++.+-+ .++||+
T Consensus 99 ~~llv~Dl-PFgtye----------------S~~sda~knAv~vmk~~g~~~vK~EgGs~~-~~~-~~~~l~e-rgipV~ 158 (306)
T KOG2949|consen 99 RPLLVGDL-PFGTYE----------------SSWSDAVKNAVRVMKEGGMDAVKLEGGSNS-RIT-AAKRLVE-RGIPVM 158 (306)
T ss_pred CceEEEec-Cccccc----------------ccHHHHHHHHHHHHHhcCCceEEEccCcHH-HHH-HHHHHHH-cCCcee
Confidence 56888887 666531 112345556677887899999999975532 122 2233333 589998
Q ss_pred EEEEEcCC------CccCCCCCHHHHHHHHH---hhCCCCceEEEEcCCChhhh
Q psy13907 126 ISFSCKDE------KHTCHGDKFGLIARDVY---AKNPAQLVAVGVNCLAPHYV 170 (698)
Q Consensus 126 iSft~~~~------g~l~~G~~~~~~~~~l~---~~~~~~~~aIGiNC~~p~~i 170 (698)
-.+-+.+. |.-.-|.++..+++-+. ..+..+.+.|-+.|..|...
T Consensus 159 gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAmqLqk~Gc~svvlECvP~~~A 212 (306)
T KOG2949|consen 159 GHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAMQLQKAGCFSVVLECVPPPVA 212 (306)
T ss_pred eeccCChhhhhhccCcCccchhHHHHHHHHHHHHHHHhcccceEeeecCChHHH
Confidence 77765443 34445666655554221 22346889999999864443
No 234
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=49.89 E-value=1.5e+02 Score=33.13 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=60.8
Q ss_pred CCCCccCCCCCCCCHHHHHHHHHHHHHHHHh---CCCCEEE--------E-ec-CcCHHHHHHHHHHHHhcCCCeEEEEE
Q psy13907 62 DGSEYRGDYIDSTTPQELIDYHRPRIEALIQ---GGIDLLA--------I-ET-LPAQEEAMVLAELIKEYPGLKAWISF 128 (698)
Q Consensus 62 ~gseY~g~y~~~~s~eel~~~~~~qi~~l~~---~GVD~il--------~-ET-i~~l~Ea~aa~~a~~~~~~~Pv~iSf 128 (698)
+|..|.|. .+..+..+.+.+=++.+.+ .|+++++ + +| +++..+..++ +++ .+-|+.+.+
T Consensus 139 DG~~~~g~----~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp~Ep~~y~t~~~~~~~~l~l---~~~-lg~~~~v~l 210 (378)
T TIGR02635 139 DGTNYPGQ----DDFRSRKDRLEESLAEVYEHLGADMRLLIEYKFFEPAFYHTDIPDWGTAYAL---SEK-LGERALVLV 210 (378)
T ss_pred CcCcCCcc----cCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCceeeecCCcHHHHHHH---HHh-hCCCceEEe
Confidence 45455552 2333433444444443332 3777765 1 34 5555555544 343 244554444
Q ss_pred EEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHH
Q psy13907 129 SCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELA 208 (698)
Q Consensus 129 t~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~ 208 (698)
|-|+...|+++.+++..+.. ......|=+|=... -+. ..+.-+.-|.+++.+++++.
T Consensus 211 ---D~GH~~~~Enia~~~a~l~~--~~kL~hiH~nd~~~------------~Dd------d~~vG~~d~~e~~~il~el~ 267 (378)
T TIGR02635 211 ---DTGHHAQGTNIEFIVATLLD--EKKLGGFHFNSRKY------------ADD------DLTVGAINPYELFLIFKEIV 267 (378)
T ss_pred ---ecCccCCCCCHHHHHHHHhh--CCceeEEEecCCCc------------ccC------CCceecCCHHHHHHHHHHHH
Confidence 56777789999996665532 12333344542210 000 01112335889999999998
Q ss_pred Hc
Q psy13907 209 AA 210 (698)
Q Consensus 209 ~~ 210 (698)
+.
T Consensus 268 ~~ 269 (378)
T TIGR02635 268 RA 269 (378)
T ss_pred hc
Confidence 76
No 235
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=49.71 E-value=88 Score=33.59 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
+|++..++.|+|+|++..| +.++++.+++.+++. +..+.+..+ .|-+++.+.+... .++|.|-+
T Consensus 200 eqa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~-~~~~~leaS--------GGI~~~ni~~yA~----tGvD~Is~ 263 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSL-APHCTLSLA--------GGINLNTLKNYAD----CGIRLFIT 263 (284)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhcc-CCCeEEEEE--------CCCCHHHHHHHHh----cCCCEEEE
Confidence 4555667799999999986 567888888877642 222333332 4777877776553 57887743
No 236
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=49.68 E-value=86 Score=33.35 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccCCH
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIETLPAQ 444 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~ 444 (698)
.+.+.-..+.++.+.+|..-|+|.++||++-+.
T Consensus 253 pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~ 285 (305)
T COG5309 253 PSVANQKIAVQEILNALRSCGYDVFVFEAFDDD 285 (305)
T ss_pred CChhHHHHHHHHHHhhhhccCccEEEeeecccc
Confidence 688999999999999999999999999998764
No 237
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=49.63 E-value=2.1e+02 Score=32.69 Aligned_cols=58 Identities=24% Similarity=0.440 Sum_probs=41.6
Q ss_pred CCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHh-cCCC
Q psy13907 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKE-YPGL 460 (698)
Q Consensus 383 ~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi-~~~~Eakaa~~a~~~-~~~~ 460 (698)
.+..|.|++|... ...++++.|+++|+|+|.+-+. .+...+...++.+++ ++++
T Consensus 211 g~l~V~aav~~~~------------------------~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~ 266 (450)
T TIGR01302 211 GRLIVGAAVGTRE------------------------FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDL 266 (450)
T ss_pred CCEEEEEEecCch------------------------hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCC
Confidence 3567888988731 2458889999999999998652 344556666777775 3678
Q ss_pred eEEE
Q psy13907 461 KAWI 464 (698)
Q Consensus 461 Pv~i 464 (698)
||++
T Consensus 267 ~vi~ 270 (450)
T TIGR01302 267 DIIA 270 (450)
T ss_pred CEEE
Confidence 9887
No 238
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.49 E-value=63 Score=34.30 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 87 IEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 87 i~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
+....+.|+|.|.+.+|+- ++++.+++.+++..++|+.++ .|-+++.+.+.+. .|+|+|.+
T Consensus 194 a~~A~~~gaD~I~ld~~~~-e~l~~~v~~i~~~~~i~i~as----------GGIt~~ni~~~a~----~Gad~Isv 254 (269)
T cd01568 194 AEEALEAGADIIMLDNMSP-EELKEAVKLLKGLPRVLLEAS----------GGITLENIRAYAE----TGVDVIST 254 (269)
T ss_pred HHHHHHcCCCEEEECCCCH-HHHHHHHHHhccCCCeEEEEE----------CCCCHHHHHHHHH----cCCCEEEE
Confidence 3334457999999999754 778887777765334565544 3667777766543 57888766
No 239
>PRK07094 biotin synthase; Provisional
Probab=49.44 E-value=3.6e+02 Score=28.92 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEec----ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHH
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIE----TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDV 487 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~E----Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~ 487 (698)
.+.+++.+. ++.+.+.|++-+.+- ...+......+++.+++..++++ ++++ |....+.++.+
T Consensus 70 ls~eei~~~----~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i--~~~~--------g~~~~e~l~~L 135 (323)
T PRK07094 70 LSPEEILEC----AKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAI--TLSL--------GERSYEEYKAW 135 (323)
T ss_pred CCHHHHHHH----HHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceE--EEec--------CCCCHHHHHHH
Confidence 577877754 444566788877763 22356677777777776434433 3322 22224566666
Q ss_pred HHhCCCCceEEE--EcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeE----
Q psy13907 488 YAKNPAQLVAVG--VNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKY---- 561 (698)
Q Consensus 488 ~~~~~~~~~~iG--lNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~i---- 561 (698)
.+ ++...+. +.-..++....+ + | ..+.+++.+.++...+.|..+
T Consensus 136 k~---aG~~~v~~glEs~~~~~~~~i----~--------~---------------~~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 136 KE---AGADRYLLRHETADKELYAKL----H--------P---------------GMSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred HH---cCCCEEEeccccCCHHHHHHh----C--------C---------------CCCHHHHHHHHHHHHHcCCeecceE
Confidence 54 3333333 333333333222 1 0 113355666677777777543
Q ss_pred EeecCCCchHHHHHHHhccccCCCC
Q psy13907 562 VGGCCRTNADDMKNVNQVPVKFSIT 586 (698)
Q Consensus 562 iGGCCGTtP~hI~al~~~v~~~~~~ 586 (698)
+=|=.|-|.+++....+.+++..+.
T Consensus 186 iiGlpget~ed~~~~l~~l~~l~~~ 210 (323)
T PRK07094 186 MVGLPGQTLEDLADDILFLKELDLD 210 (323)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCCC
Confidence 2222367889999988888877765
No 240
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=49.44 E-value=2.2e+02 Score=29.79 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH-hCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEE
Q psy13907 410 DSTTPQELIDYHRPRIEALI-QGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 463 (698)
Q Consensus 410 ~~~t~del~~~y~~qi~~L~-~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~ 463 (698)
+.-|.+++.+...+.++.|. +.|+|++++=. ++.-+ .++..+++..++|++
T Consensus 38 G~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaC--NTA~a-~~~~~l~~~~~iPii 89 (251)
T TIGR00067 38 GEKSPEFILEYVLELLTFLKERHNIKLLVVAC--NTASA-LALEDLQRNFDFPVV 89 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeC--chHHH-HHHHHHHHHCCCCEE
Confidence 46789999999999999999 99999998743 23221 346666654578854
No 241
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.24 E-value=2.6e+02 Score=28.58 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEE--
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV-- 500 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGl-- 500 (698)
+|++...++|+++++- |.+. ..+++++++ .++|++ +.-.|.+++..+.. .+.+.|++
T Consensus 79 ~~~~~a~~aGA~Fivs---P~~~--~~v~~~~~~-~~i~~i-----------PG~~T~~E~~~A~~----~Gad~vklFP 137 (213)
T PRK06552 79 VTARLAILAGAQFIVS---PSFN--RETAKICNL-YQIPYL-----------PGCMTVTEIVTALE----AGSEIVKLFP 137 (213)
T ss_pred HHHHHHHHcCCCEEEC---CCCC--HHHHHHHHH-cCCCEE-----------CCcCCHHHHHHHHH----cCCCEEEECC
Confidence 6788888999999983 3332 345555666 478875 33456778777752 56677777
Q ss_pred -cCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeec
Q psy13907 501 -NCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGC 565 (698)
Q Consensus 501 -NC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGC 565 (698)
...|++.++.+...+ .+.|+ .|-.|. + .+-+.+|++.|++.+|..
T Consensus 138 a~~~G~~~ik~l~~~~-p~ip~--~atGGI-------------~----~~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 138 GSTLGPSFIKAIKGPL-PQVNV--MVTGGV-------------N----LDNVKDWFAAGADAVGIG 183 (213)
T ss_pred cccCCHHHHHHHhhhC-CCCEE--EEECCC-------------C----HHHHHHHHHCCCcEEEEc
Confidence 445665544442222 23443 233331 1 244578999998776654
No 242
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=49.14 E-value=2.9e+02 Score=30.83 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec--------------Cc-----C---HHHHHHHHHHHHhcCCCeEEEEEEEcCCC
Q psy13907 77 QELIDYHRPRIEALIQGGIDLLAIET--------------LP-----A---QEEAMVLAELIKEYPGLKAWISFSCKDEK 134 (698)
Q Consensus 77 eel~~~~~~qi~~l~~~GVD~il~ET--------------i~-----~---l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g 134 (698)
+++.++|+++++ +|+=+|+.|- ++ + +...+.+++++++ .+.++++++.-. .|
T Consensus 35 ~~~~~yy~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~davh~-~G~~i~~QL~H~-~G 108 (382)
T cd02931 35 QRGIDYYVERAK----GGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERVHA-YGTKIFLQLTAG-FG 108 (382)
T ss_pred HHHHHHHHHHhc----CCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHHHH-cCCEEEEEccCc-CC
Confidence 678889988765 5788887772 11 1 2346777777777 477888887521 01
Q ss_pred cc--------------------------CCCCC---HHHHHHHH----HhhCCCCceEEEEcCCC-hhhhHHHHHHhHhh
Q psy13907 135 HT--------------------------CHGDK---FGLIARDV----YAKNPAQLVAVGVNCLA-PHYVESLLTSAEVE 180 (698)
Q Consensus 135 ~l--------------------------~~G~~---~~~~~~~l----~~~~~~~~~aIGiNC~~-p~~i~~~l~~~~~~ 180 (698)
+. ...-+ ++++++.. ......|.|+|-|||.+ --.+.+.|....+.
T Consensus 109 r~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~ 188 (382)
T cd02931 109 RVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNK 188 (382)
T ss_pred CccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCC
Confidence 10 01112 33333321 11124799999999976 44566666654322
Q ss_pred cccccccccc-cccCCChHHHHHHHHHHHHc
Q psy13907 181 GQSLELPVNN-TLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 181 ~~~~~~p~~~-~~~~~gP~~~~~~~~~l~~~ 210 (698)
-. +++ |.+..-+.-++++++.+++.
T Consensus 189 Rt-----DeyGGslenR~rf~~eii~~vr~~ 214 (382)
T cd02931 189 RT-----DKYGGSLENRLRFAIEIVEEIKAR 214 (382)
T ss_pred CC-----CcCCCCHHHHhHHHHHHHHHHHHh
Confidence 21 112 22233467788888888775
No 243
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.80 E-value=3.5e+02 Score=28.56 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhCCCCEEEecccC----------------------CHHHHHHHHHHHH-hcCCCeEEEEEEecCCCccCC
Q psy13907 420 YHRPRIEALIQGGIDLLAIETLP----------------------AQEEAMVLAELIK-EYPGLKAWISFSCKDEKHTCH 476 (698)
Q Consensus 420 ~y~~qi~~L~~~GvDlll~ETi~----------------------~~~Eakaa~~a~~-~~~~~Pv~iS~t~~~~g~l~~ 476 (698)
...+.++.|.++|||+|=+-.=+ ++...-..+..++ +..+.|++ -++--+ - .-
T Consensus 27 ~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v-lm~Y~N-~--i~ 102 (258)
T PRK13111 27 TSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV-LMTYYN-P--IF 102 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEeccc-H--Hh
Confidence 35577888999999998443211 2223333444444 33467865 333211 1 11
Q ss_pred CCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc-CC-CC-EEEecCCCCCc----C-CCCccccc--------
Q psy13907 477 GDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG-RD-VP-LLCCPNSGETF----D-PGQRIWMN-------- 540 (698)
Q Consensus 477 G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~-~~-~p-l~~yPNaG~~~----d-~~~g~~~~-------- 540 (698)
...+...++.+.+ .+++++-++=..+++...+++.+. .. .+ ..+-||.-... . ...| |.|
T Consensus 103 ~~G~e~f~~~~~~---aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g-fIY~vs~~GvT 178 (258)
T PRK13111 103 QYGVERFAADAAE---AGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG-FVYYVSRAGVT 178 (258)
T ss_pred hcCHHHHHHHHHH---cCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence 2224445555543 567777777777788877777665 22 22 33667763100 0 0011 211
Q ss_pred ---CCChhhHHHHHHHHHHc-CCeEEeecCCCchHHHHHHHhcccc
Q psy13907 541 ---KDSVPSVDTYVPRWLDT-GVKYVGGCCRTNADDMKNVNQVPVK 582 (698)
Q Consensus 541 ---~~~p~~~a~~~~~~~~~-G~~iiGGCCGTtP~hI~al~~~v~~ 582 (698)
...+....+++++..+. +..++=|=+=.+|+|++.+.+..++
T Consensus 179 G~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADG 224 (258)
T PRK13111 179 GARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADG 224 (258)
T ss_pred CcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCE
Confidence 12234455555555543 4444334444689999998875443
No 244
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=48.66 E-value=55 Score=34.16 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecC
Q psy13907 313 NRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLG 392 (698)
Q Consensus 313 ~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiG 392 (698)
.|.-|...-++|.+||+--|.---..++. .-.. -++.+ -...=++-|++++.+ ...+|-.-.-
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~-~~~~--l~~~e----e~~~kI~Aa~~a~~~----------~~~~I~ARTD 145 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGH-GGKQ--LVSPE----EMVAKIRAAVDARRD----------PDFVIIARTD 145 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTT-STT---B--HH----HHHHHHHHHHHHHSS----------TTSEEEEEEC
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCC-CCCc--eeCHH----HHHHHHHHHHHhccC----------CeEEEEEecc
Confidence 47778888899999998755332222221 0000 11222 222234455555543 1244443211
Q ss_pred CcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEE
Q psy13907 393 SYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISF 466 (698)
Q Consensus 393 P~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~ 466 (698)
- |. ...+-.+.--+++++..++|+|++++|.+.+..|++.+.+.+ +.|+.+..
T Consensus 146 a--------------~~---~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~v~~ 198 (238)
T PF13714_consen 146 A--------------FL---RAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV----DGPLNVNP 198 (238)
T ss_dssp H--------------HC---HHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH----SSEEEEET
T ss_pred c--------------cc---cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEc
Confidence 1 10 023444555688999999999999999999999987777766 37865544
No 245
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.64 E-value=79 Score=34.01 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
+|+...++.|+|+|.+..|+ .++++.+++.+++. .+.|+.+| .|-+.+.+.+... .|+|.|-+-
T Consensus 207 eea~eA~~~GaD~I~LDn~~-~e~l~~av~~~~~~~~~i~leAs----------GGIt~~ni~~ya~----tGvD~Isvg 271 (288)
T PRK07428 207 EQVQEALEYGADIIMLDNMP-VDLMQQAVQLIRQQNPRVKIEAS----------GNITLETIRAVAE----TGVDYISSS 271 (288)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHHHhcCCCeEEEEE----------CCCCHHHHHHHHH----cCCCEEEEc
Confidence 34545557899999999764 58899999888752 34554443 3667777666543 578877765
Q ss_pred C
Q psy13907 164 C 164 (698)
Q Consensus 164 C 164 (698)
+
T Consensus 272 s 272 (288)
T PRK07428 272 A 272 (288)
T ss_pred h
Confidence 5
No 246
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=48.61 E-value=78 Score=36.51 Aligned_cols=65 Identities=25% Similarity=0.252 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCEEEEecC-cCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEE
Q psy13907 84 RPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVG 161 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi-~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIG 161 (698)
.++++.|+++|+|+|.+.+- .....+...++.+++. ++.|+++. ++.+.+++...+. .++++|.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g----------~v~t~e~a~~l~~----aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG----------NVATAEAARALIE----AGADAVK 295 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe----------ccCCHHHHHHHHH----cCCCEEE
Confidence 67899999999999998863 5555556666666653 47898872 3556666665443 5788876
Q ss_pred E
Q psy13907 162 V 162 (698)
Q Consensus 162 i 162 (698)
+
T Consensus 296 v 296 (486)
T PRK05567 296 V 296 (486)
T ss_pred E
Confidence 5
No 247
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=48.60 E-value=88 Score=33.14 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEE-----EecccCC--HHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHH
Q psy13907 413 TPQELIDYHRPRIEALIQGGIDLL-----AIETLPA--QEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIAR 485 (698)
Q Consensus 413 t~del~~~y~~qi~~L~~~GvDll-----l~ETi~~--~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~ 485 (698)
+.+.+.+|-...++.+.+ -|..+ ++|.... +.+++..++.+++. +.+|+.-+-.-| =|.|....++
T Consensus 35 ~~~~~~~f~~~ii~~l~~-~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~-g~~VilD~K~~D-----IpnTv~~~a~ 107 (261)
T TIGR02127 35 SAAGLQAFCLRIIDATAE-YAAVVKPQVAFFERFGSEGFKALEEVIAHARSL-GLPVLADVKRGD-----IGSTASAYAK 107 (261)
T ss_pred hHHHHHHHHHHHHHhcCC-cceEEecCHHHHHhcCHHHHHHHHHHHHHHHHC-CCeEEEEeeccC-----hHHHHHHHHH
Confidence 456777777787777754 23333 3444321 33555555666663 678877666554 3455666666
Q ss_pred HHHHhCCCCceEEEEcC-CChhhhHHHHHHhc-C--CCCEEE-ecCCCCCcCCCCcccccCCC-hhhHHHHHHHHHHc--
Q psy13907 486 DVYAKNPAQLVAVGVNC-LAPHYVESLLTSAG-R--DVPLLC-CPNSGETFDPGQRIWMNKDS-VPSVDTYVPRWLDT-- 557 (698)
Q Consensus 486 ~~~~~~~~~~~~iGlNC-~~p~~~~~~l~~l~-~--~~pl~~-yPNaG~~~d~~~g~~~~~~~-p~~~a~~~~~~~~~-- 557 (698)
.+.. ..+++++-+|+ .|.+.|.++++... . ...+.+ .-|.|.......+ .....+ .+.+++.++.|.+.
T Consensus 108 a~~~--~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~~lq~~~-~~~~~~~~~~V~~~a~~~~~~~~ 184 (261)
T TIGR02127 108 AWLG--HLHADALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGADLQDLR-VSDGRTVYEEVAELAGELNESPG 184 (261)
T ss_pred HHHh--hcCCCEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHHHHhhhh-ccCCCCHHHHHHHHHHHhccccC
Confidence 6642 24579999999 78999999988764 2 223333 3443321100101 000001 23445555556533
Q ss_pred CCeEEeecCC-CchHHHHHHHhcc
Q psy13907 558 GVKYVGGCCR-TNADDMKNVNQVP 580 (698)
Q Consensus 558 G~~iiGGCCG-TtP~hI~al~~~v 580 (698)
|....|-=|| |.|+.++.|++.+
T Consensus 185 ~~g~~GvV~gAT~p~e~~~iR~~~ 208 (261)
T TIGR02127 185 DCSSVGAVVGATSPGDLLRLRIEM 208 (261)
T ss_pred cCCceEEEECCCCHHHHHHHHHhC
Confidence 0123555554 6689999999987
No 248
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=48.58 E-value=1.1e+02 Score=35.09 Aligned_cols=82 Identities=9% Similarity=0.103 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE-----E-ecCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHH
Q psy13907 74 TTPQELIDYHRPRIEALIQGGIDLLA-----I-ETLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFG 143 (698)
Q Consensus 74 ~s~eel~~~~~~qi~~l~~~GVD~il-----~-ETi~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~ 143 (698)
++.+++. +++..+..+|+|+|= . .++.-++| ++++.+++++. ++.+.+-++.+. |.+..
T Consensus 173 Lsp~~~a----~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT-------~~~~~ 241 (468)
T PRK04208 173 LSAKNYG----RVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVT-------APTME 241 (468)
T ss_pred CCHHHHH----HHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecC-------CCCHH
Confidence 4555544 445556678999863 2 23444444 55555665542 566666667653 44566
Q ss_pred HHHHHHHhhCCCCceEEEEcCCC
Q psy13907 144 LIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 144 ~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
++.+..+.....++.++.+|...
T Consensus 242 em~~ra~~~~e~G~~~~mv~~~~ 264 (468)
T PRK04208 242 EMYKRAEFAKELGSPIVMIDVVT 264 (468)
T ss_pred HHHHHHHHHHHhCCCEEEEeccc
Confidence 66665533234688899999865
No 249
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=48.58 E-value=44 Score=36.47 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=75.0
Q ss_pred HHHHH-HHhcchhhc-ccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCC
Q psy13907 321 HRDYV-RAGCDIVTT-NTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFL 398 (698)
Q Consensus 321 H~~yl-~AGAdII~T-NTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l 398 (698)
+|.|| ..|-.|-+. .|-| +-+|++-....||.+.++.-||.. . ..+++|. |. .-+
T Consensus 63 fR~~Lw~~GLgVAEAMDTAQ-------RGMGLDW~~a~ELIrRs~aeA~~~-g------------~~ia~Ga-GT--D~L 119 (382)
T PF06187_consen 63 FRRHLWSLGLGVAEAMDTAQ-------RGMGLDWAAARELIRRSAAEARAV-G------------ARIACGA-GT--DQL 119 (382)
T ss_dssp HHHHHHHTT-EEEET-GGGT-------BTTTB-HHHHHHHHHHHHHHHHTS-S--------------EEEEE-----TTS
T ss_pred HHHHHHHccchHHHHhhhhh-------hcCCCChHHHHHHHHHHHHHHHhc-C------------CcEEeec-Cc--CCC
Confidence 55665 666555542 2222 114677777888888887766544 1 1344443 32 122
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHH---H-------HHHHhcCCCeEEEEEEe
Q psy13907 399 HDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVL---A-------ELIKEYPGLKAWISFSC 468 (698)
Q Consensus 399 ~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa---~-------~a~~~~~~~Pv~iS~t~ 468 (698)
.| .+..|.+++..+|.||++...+.|..+|+.-+ -.=++++ - ..+++ .+.||++-.-=
T Consensus 120 ~~--------~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMAS---RaLA~~A~~p~DY~~VY~~lL~q-~~~PVILHWLG 187 (382)
T PF06187_consen 120 DP--------APAASLDDVIAAYEEQLEAVEAAGGRVILMAS---RALAAVARSPDDYLRVYDRLLSQ-ADEPVILHWLG 187 (382)
T ss_dssp -----------TT--HHHHHHHHHHHHHHHHHTT--EEE------HHHHHH--SHHHHHHHHHHHHHH--SS-EEEEEE-
T ss_pred CC--------CCCCCHHHHHHHHHHHHHHHHHcCCeEEEeeh---HHHHHhhCCHHHHHHHHHHHHHH-cCCCEEEEecc
Confidence 22 13578999999999999999999999988532 2111111 1 11122 45788766521
Q ss_pred cC-CCcc--CCC-CcHHHHHHHHHHh---CCCCceEEEEcCCChhhhHHH
Q psy13907 469 KD-EKHT--CHG-DKFGLIARDVYAK---NPAQLVAVGVNCLAPHYVESL 511 (698)
Q Consensus 469 ~~-~g~l--~~G-~~l~~~v~~~~~~---~~~~~~~iGlNC~~p~~~~~~ 511 (698)
+- +..| =-| ..+.++.+.+.+. ....+++|=+.=+..+.-..+
T Consensus 188 ~mFDPaL~GYWGs~d~~~A~~t~l~lI~~~~~kVdGIKiSLLD~~~Ei~l 237 (382)
T PF06187_consen 188 DMFDPALAGYWGSADLDAAMDTVLELIAAHADKVDGIKISLLDAEKEIAL 237 (382)
T ss_dssp TTT-GGGTTTTS-SSHHHHHHHHHHHHHHTGGGEEEEEEES--HHHHHHH
T ss_pred cccCcccccccCCCcHHHHHHHHHHHHHhChhhcCeeEecccCcHHHHHH
Confidence 10 1111 122 3565555555432 235677777776665543333
No 250
>PRK00957 methionine synthase; Provisional
Probab=48.55 E-value=3e+02 Score=29.44 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEE-ecC--cCHHHHHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHH
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAI-ETL--PAQEEAMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIARDV 149 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~-ETi--~~l~Ea~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l 149 (698)
..++.+.|++.++.|.+.|+++|-+ |.. ..+.+.+.+.+++++. .+.++++... |. ...++..+
T Consensus 139 ~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~~~~~~~~~~~~~~~i~~~v~lH~C---------G~-~~~i~~~l 208 (305)
T PRK00957 139 IYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYDLEVAKKAIDIITKGLNVPVAMHVC---------GD-VSNIIDDL 208 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCchHHHHHHHHHHHHHhhCCceEEEEC---------CC-cHHHHHHH
Confidence 5668889999999999999997544 421 1222333344444432 2444444442 21 23445555
Q ss_pred HhhCCCCceEEEEcCCChhhhHHHHHHhHhh---ccc--cc-ccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcC
Q psy13907 150 YAKNPAQLVAVGVNCLAPHYVESLLTSAEVE---GQS--LE-LPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFE 223 (698)
Q Consensus 150 ~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~---~~~--~~-~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~ 223 (698)
. ..+++++++-.+.... -++.+++. ... ++ ++..+ ...+.|+++.+.+++..+. . + .
T Consensus 209 ~---~~~vd~i~ld~~~~~~---~l~~l~~~~~~~k~l~~GvId~~~-~~~e~~e~v~~~i~~~~~~------~---~-~ 271 (305)
T PRK00957 209 L---KFNVDILDHEFASNKK---NLEILEEKDLIGKKIGFGCVDTKS-KSVESVDEIKALIEEGIEI------L---G-A 271 (305)
T ss_pred H---hCCCCEEEEeecCCCC---CHHHHhhhccCCCEEEEEEEcCCC-CCCCCHHHHHHHHHHHHHh------c---C-H
Confidence 3 3689999998854321 12333221 111 12 23322 3577899999888887764 1 1 1
Q ss_pred ccEEeecCCCCc
Q psy13907 224 APLKAKPNRSLF 235 (698)
Q Consensus 224 ~~~~~~pnag~p 235 (698)
.-+.+.|+-|++
T Consensus 272 ~~l~lsp~CGl~ 283 (305)
T PRK00957 272 ENILIDPDCGMR 283 (305)
T ss_pred HHEEECCCcCCC
Confidence 238889999984
No 251
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=48.55 E-value=4.8e+02 Score=33.36 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=38.4
Q ss_pred CChhhhHHHHHHh--HhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCceeecCee
Q psy13907 165 LAPHYVESLLTSA--EVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVF 242 (698)
Q Consensus 165 ~~p~~i~~~l~~~--~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~~~~~~ 242 (698)
+.++.+..+-+.. ++....+++|.-.......+++....++++ +.|+.++|..| .+|+.
T Consensus 659 ~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~i---------------gyPvvVKP~~~----~Gg~G 719 (1066)
T PRK05294 659 TSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEI---------------GYPVLVRPSYV----LGGRA 719 (1066)
T ss_pred CCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhc---------------CCCeEEEeCCC----CCCCc
Confidence 4566665544442 333344577776666656666655543322 57999999877 35566
Q ss_pred eeeeec
Q psy13907 243 VNVQYN 248 (698)
Q Consensus 243 ~~~~~~ 248 (698)
+.+.++
T Consensus 720 v~iv~~ 725 (1066)
T PRK05294 720 MEIVYD 725 (1066)
T ss_pred EEEECC
Confidence 655654
No 252
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=48.32 E-value=1.2e+02 Score=30.16 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=43.8
Q ss_pred HHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 86 RIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 86 qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
+++.+.+.|+|++.+=-.........+++.+++ .++++++.+.- ..++.+++.... ..+++.|+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~-~g~~~~~~~~~-------~~t~~~~~~~~~----~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKK-HGKEVQVDLIN-------VKDKVKRAKELK----ELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH-cCCEEEEEecC-------CCChHHHHHHHH----HcCCCEEEEc
Confidence 678888899999876544444456778888888 58999885411 233444544332 2478999886
No 253
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=48.13 E-value=2.9e+02 Score=32.87 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=60.5
Q ss_pred HHHhCCCCEE-EEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCCh
Q psy13907 89 ALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAP 167 (698)
Q Consensus 89 ~l~~~GVD~i-l~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p 167 (698)
...+.|+|+| +|-.+.+++.++..++++|+ .++-+..++++..+ .-.+++..++.++.....+++.|.|-=+.
T Consensus 104 ~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~-~G~~~~~~i~yt~s----p~~t~e~~~~~ak~l~~~Gad~I~IkDta- 177 (596)
T PRK14042 104 LAVNNGVDVFRVFDALNDARNLKVAIDAIKS-HKKHAQGAICYTTS----PVHTLDNFLELGKKLAEMGCDSIAIKDMA- 177 (596)
T ss_pred HHHHcCCCEEEEcccCcchHHHHHHHHHHHH-cCCEEEEEEEecCC----CCCCHHHHHHHHHHHHHcCCCEEEeCCcc-
Confidence 3457899997 56788899999999999998 57777777665432 23345444443322223567766554332
Q ss_pred hhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 168 HYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 168 ~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
.-+ -|.++..+++.+++.
T Consensus 178 --------------G~l-----------~P~~v~~lv~alk~~ 195 (596)
T PRK14042 178 --------------GLL-----------TPTVTVELYAGLKQA 195 (596)
T ss_pred --------------cCC-----------CHHHHHHHHHHHHhh
Confidence 112 799999999999765
No 254
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=48.03 E-value=3.3e+02 Score=30.97 Aligned_cols=140 Identities=18% Similarity=0.208 Sum_probs=72.5
Q ss_pred ccchhhcccChHHHHHHHHHHHHHhcchhhccc-ccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCccC
Q psy13907 304 LWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNT-YQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKR-DPAIA 381 (698)
Q Consensus 304 lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNT-f~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~-~~~~~ 381 (698)
-|-.+-.-+--+.-++..++|++||-+-|--.+ ..+.- +-..++.+ .+.+++++|++-|-+.+.+. + .
T Consensus 96 ~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~cag----dp~pL~d~---~vA~Raa~L~~~aE~~a~~~~~---~ 165 (426)
T PRK15458 96 RWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCAD----DPIPLTDE---IVAERAARLAKIAEETCREHFG---E 165 (426)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCCCC----CCCCCChH---HHHHHHHHHHHHHHHHHHHhcC---C
Confidence 465332333334567789999999999885443 33221 11123222 36678888887332221111 1 2
Q ss_pred CCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCE-------EEe--------cc--cCCH
Q psy13907 382 SRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDL-------LAI--------ET--LPAQ 444 (698)
Q Consensus 382 ~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDl-------ll~--------ET--i~~~ 444 (698)
..++||.|.==|..--.. .+-.+ ..-.+.+.........=++|.+.|.+- +++ +- -++.
T Consensus 166 ~~~vYvIGTEvP~pGGa~--~~~~~--~~vTs~e~~~~Ti~~h~~af~~~GL~~aw~rvi~~VVQpGVef~~~~V~~y~~ 241 (426)
T PRK15458 166 SDLVYVIGTEVPVPGGAH--ETLSE--LAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIGLVVQPGVEFDHTNVIDYQP 241 (426)
T ss_pred CCCeEEeccccCCCCchh--hhccc--cCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeecCcCccccCH
Confidence 357899998665420000 00000 112455666665555557777777533 111 11 2456
Q ss_pred HHHHHHHHHHHhc
Q psy13907 445 EEAMVLAELIKEY 457 (698)
Q Consensus 445 ~Eakaa~~a~~~~ 457 (698)
..++.....++++
T Consensus 242 ~~A~~Ls~~~~~~ 254 (426)
T PRK15458 242 EKASALSQMVENY 254 (426)
T ss_pred HHHHHHHHHHHhC
Confidence 6777777777765
No 255
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=47.78 E-value=4.1e+02 Score=29.01 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhCCCCEEE-ecc---cCCHHHH--------HHHHHHHHhcC-CCeEEEEEEecCCCccCCCCcHHHHHH
Q psy13907 419 DYHRPRIEALIQGGIDLLA-IET---LPAQEEA--------MVLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIAR 485 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll-~ET---i~~~~Ea--------kaa~~a~~~~~-~~Pv~iS~t~~~~g~l~~G~~l~~~v~ 485 (698)
+.-.+.+++++++|+|++. ++. +-+..+- |-++..+++.. ..|++ -++ . |.+ ..++
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~c-g-------~~~--~~~~ 254 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVI-LFG-K-------GAG--ELLE 254 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEc-C-------CcH--HHHH
Confidence 3345667778889999885 554 3333332 33444555432 33432 332 1 211 2344
Q ss_pred HHHHhCCCCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe---E
Q psy13907 486 DVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK---Y 561 (698)
Q Consensus 486 ~~~~~~~~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~---i 561 (698)
.+.+ .++.+++++- .. +..+.+.+..+ +.+.-|- ++ .-. ..++++..+.+++.++.+.. |
T Consensus 255 ~~~~---~~~~~is~d~~~d---l~~~k~~~g~~--~~i~Gni----~p--~ll--~gt~e~i~~~~~~~i~~~~~~gfI 318 (346)
T PRK00115 255 AMAE---TGADVVGLDWTVD---LAEARRRVGDK--KALQGNL----DP--AVL--LAPPEAIEEEVRAILDGGGGPGHI 318 (346)
T ss_pred HHHh---cCCCEEeeCCCCC---HHHHHHHcCCC--eEEEeCC----Ch--hHh--cCCHHHHHHHHHHHHHHhCCCCee
Confidence 4432 3556777776 44 33443444322 4455544 11 101 24688999999998875422 4
Q ss_pred Ee-ecC---CCchHHHHHHHhccccC
Q psy13907 562 VG-GCC---RTNADDMKNVNQVPVKF 583 (698)
Q Consensus 562 iG-GCC---GTtP~hI~al~~~v~~~ 583 (698)
+. ||. +|-+++|+++.++++.+
T Consensus 319 l~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 319 FNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred eecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 43 554 57889999999998764
No 256
>PRK00865 glutamate racemase; Provisional
Probab=47.68 E-value=54 Score=34.49 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
.-|.+++.++-.+.++.|.+.|+|++++=....-. .+++.+++..++||+
T Consensus 46 ~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~---~~l~~lr~~~~iPvi 95 (261)
T PRK00865 46 EKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA---VALPDLRERYDIPVV 95 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH---HHHHHHHHhCCCCEE
Confidence 36789999999999999999999999976443221 244556654578877
No 257
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.56 E-value=70 Score=33.97 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
+|++...+.|+|.|.+..|+ .++++.+++.++. ++|+.++- |-+++.+.+.+. .|+|+|-+-.
T Consensus 193 eea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~--~ipi~AiG----------GI~~~ni~~~a~----~Gvd~Iav~s 255 (268)
T cd01572 193 EQLKEALEAGADIIMLDNMS-PEELREAVALLKG--RVLLEASG----------GITLENIRAYAE----TGVDYISVGA 255 (268)
T ss_pred HHHHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC--CCcEEEEC----------CCCHHHHHHHHH----cCCCEEEEEe
Confidence 34444556899999999986 7888888776643 46766553 666766665443 4677665543
No 258
>PRK04326 methionine synthase; Provisional
Probab=47.53 E-value=3.9e+02 Score=28.82 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEE-ecC--cCHHHHHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 77 QELIDYHRPRIEALIQGGIDLLAI-ETL--PAQEEAMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 77 eel~~~~~~qi~~l~~~GVD~il~-ETi--~~l~Ea~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
.++.+.++++++.|.+.|++.|-+ |.. .+..+.+.+++++++. .+.++++...+. . ....+..+.
T Consensus 157 ~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G--------~-~~~~~~~l~ 227 (330)
T PRK04326 157 FDLAKVINEEIKNLVEAGAKYIQIDEPALATHPEDVEIAVEALNRIVKGINAKLGLHVCYG--------D-YSRIAPYIL 227 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCchhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCC--------C-cHHHHHHHH
Confidence 567889999999999999995544 431 1335556666666653 244556555443 2 234455553
Q ss_pred hhCCCCceEEEEcCCChhhhHHHHHHhHhh--cccc---cccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCcc
Q psy13907 151 AKNPAQLVAVGVNCLAPHYVESLLTSAEVE--GQSL---ELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAP 225 (698)
Q Consensus 151 ~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~--~~~~---~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 225 (698)
..+++++++--.... ..-+..+++. .+.+ -+|. -....+.|+++.+.+++..+. . + ..-
T Consensus 228 ---~~~vd~i~~d~~~~~--~~~l~~~~~~~~~~~l~~Gvv~~-~~~~~~~~e~v~~~v~~~~~~------~---~-~~~ 291 (330)
T PRK04326 228 ---EFPVDQFDLEFANGN--YKLLDLLKEYGFDKELGLGVIDV-HSARVESVEEIKEAIKKGLEY------V---P-PEK 291 (330)
T ss_pred ---hCCCCEEEEEeCCCC--chhHHHhhccCCCCeEEeEEEeC-CCCCCCCHHHHHHHHHHHHHh------C---C-hhh
Confidence 367888887665321 1234444333 2221 2343 234678999999999988774 1 1 123
Q ss_pred EEeecCCCCce
Q psy13907 226 LKAKPNRSLFE 236 (698)
Q Consensus 226 ~~~~pnag~p~ 236 (698)
+.+-|+.|++.
T Consensus 292 ~~lsp~Cgl~~ 302 (330)
T PRK04326 292 LYINPDCGLKL 302 (330)
T ss_pred EEECCCCCCCc
Confidence 78889999874
No 259
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=47.48 E-value=54 Score=34.19 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEE
Q psy13907 78 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISF 128 (698)
Q Consensus 78 el~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSf 128 (698)
+-.+.--+|.+++.++|+|.+.+|-+.+.+|++.+.+.+ +.|+.+..
T Consensus 152 ~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~v~~ 198 (238)
T PF13714_consen 152 EGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV----DGPLNVNP 198 (238)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH----SSEEEEET
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEc
Confidence 333455568999999999999999999999988777665 37866555
No 260
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=47.02 E-value=1.9e+02 Score=28.59 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-----cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCC
Q psy13907 81 DYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPA 155 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~E-----Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~ 155 (698)
....++++.+.+.|+|.|=+= .++++..-..+++.+++..+.|+.+-+.+.+ ..+.++.+. ..
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~---------~~~~~~~~~---~~ 78 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVEN---------PDRYIEDFA---EA 78 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCC---------HHHHHHHHH---Hc
Confidence 456778999999999998884 3344444344555555545677766555543 234444443 25
Q ss_pred CceEEEEcCCChhhhHHHHHHhHhh
Q psy13907 156 QLVAVGVNCLAPHYVESLLTSAEVE 180 (698)
Q Consensus 156 ~~~aIGiNC~~p~~i~~~l~~~~~~ 180 (698)
++++|-+=...++.....++.+++.
T Consensus 79 gadgv~vh~~~~~~~~~~~~~~~~~ 103 (210)
T TIGR01163 79 GADIITVHPEASEHIHRLLQLIKDL 103 (210)
T ss_pred CCCEEEEccCCchhHHHHHHHHHHc
Confidence 7887777555444455555554443
No 261
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=46.98 E-value=4.4e+02 Score=29.24 Aligned_cols=83 Identities=11% Similarity=-0.012 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCC--EEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCc--HHHHHHHHHHhCC-CCceE
Q psy13907 423 PRIEALIQGGID--LLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDK--FGLIARDVYAKNP-AQLVA 497 (698)
Q Consensus 423 ~qi~~L~~~GvD--lll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~--l~~~v~~~~~~~~-~~~~~ 497 (698)
..++.+.+.|+| +++++. .|+.++|..+ +-.+.|...+... .|..|++ +.+.+..+.+... .+...
T Consensus 281 ~~l~~l~~~g~~~v~~~~~~-~dl~~ak~~~-------g~~~~i~GNl~p~-~L~~Gt~e~i~~~v~~~l~~~~~~~gfI 351 (378)
T cd03308 281 RYLEYLQELPKGKTVGLFEY-GDPKKVKEKL-------GDKKCIAGGFPTT-LLKYGTPEECIDYVKELLDTLAPGGGFI 351 (378)
T ss_pred HHHHHHHhcCCCcEEEcCCC-CCHHHHHHHh-------CCCEEEEcCCCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 345667778888 677776 5776654332 2224556666544 5556653 3344444443322 23456
Q ss_pred EEEcC-CC------hhhhHHHHHH
Q psy13907 498 VGVNC-LA------PHYVESLLTS 514 (698)
Q Consensus 498 iGlNC-~~------p~~~~~~l~~ 514 (698)
++.-| .. ++.++.+++.
T Consensus 352 l~~gcgi~p~tp~~~eNi~a~v~a 375 (378)
T cd03308 352 FGTDKPIISADDAKPENLIAVIEF 375 (378)
T ss_pred EeCCCcCCCCCCCChHHHHHHHHH
Confidence 77778 32 2555555543
No 262
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=46.96 E-value=4.1e+02 Score=28.85 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=63.7
Q ss_pred HHHHHHHhCCCCEEEecccCCH-------------HH--------------HHHHHHHHHhc--CCCeEEEEEEecCCCc
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQ-------------EE--------------AMVLAELIKEY--PGLKAWISFSCKDEKH 473 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~-------------~E--------------akaa~~a~~~~--~~~Pv~iS~t~~~~g~ 473 (698)
+.++.+.+.|+..+..-|++.- .+ +...+.-+++. .+.|+++|+...+...
T Consensus 63 ~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~ 142 (327)
T cd04738 63 EAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTP 142 (327)
T ss_pred HHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCc
Confidence 4455556778888777776532 01 11223333322 3589999996544211
Q ss_pred cCCC-CcHHHHHHHHHHhCCCCceEEEEcCCC-----------hhhhHHHHHHhc--C-----CCCEEEecCCCCCcCCC
Q psy13907 474 TCHG-DKFGLIARDVYAKNPAQLVAVGVNCLA-----------PHYVESLLTSAG--R-----DVPLLCCPNSGETFDPG 534 (698)
Q Consensus 474 l~~G-~~l~~~v~~~~~~~~~~~~~iGlNC~~-----------p~~~~~~l~~l~--~-----~~pl~~yPNaG~~~d~~ 534 (698)
+..+ +.+.+.++.+. ...++|-+|+.- |+.+.++++.+. . ++|+++.-..+
T Consensus 143 ~~~~~~d~~~~~~~~~----~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~------ 212 (327)
T cd04738 143 LEDAVEDYVIGVRKLG----PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD------ 212 (327)
T ss_pred ccccHHHHHHHHHHHH----hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC------
Confidence 1111 12333444442 225677787732 245666766665 2 38888776421
Q ss_pred CcccccCCChhhHHHHHHHHHHcCCe
Q psy13907 535 QRIWMNKDSVPSVDTYVPRWLDTGVK 560 (698)
Q Consensus 535 ~g~~~~~~~p~~~a~~~~~~~~~G~~ 560 (698)
| +.+++.+.++.+.+.|+.
T Consensus 213 ---~----~~~~~~~ia~~l~~aGad 231 (327)
T cd04738 213 ---L----SDEELEDIADVALEHGVD 231 (327)
T ss_pred ---C----CHHHHHHHHHHHHHcCCc
Confidence 1 223556666666666644
No 263
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=46.75 E-value=3e+02 Score=32.24 Aligned_cols=116 Identities=20% Similarity=0.329 Sum_probs=69.9
Q ss_pred HHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCC
Q psy13907 322 RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDG 401 (698)
Q Consensus 322 ~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~ 401 (698)
+.-+++|+++|.... .+|...+...++++.++..+....+++.||+... .|. +++- .+.++
T Consensus 92 e~~~~~g~~~i~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~--------------~v~--~~~e--~~~Da 152 (524)
T PRK12344 92 QALLDAGTPVVTIFG-KSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGR--------------EVI--FDAE--HFFDG 152 (524)
T ss_pred HHHHhCCCCEEEEEE-CCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC--------------eEE--Eccc--ccccc
Confidence 334788999876653 4555555555678777777777777777666421 222 2221 01110
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhcCCCeEEEEEEecC
Q psy13907 402 SEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEYPGLKAWISFSCKD 470 (698)
Q Consensus 402 ~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~ 470 (698)
| + .+. +++.+.++.+.+.|+|.|.+= |+ ....+....+..+++.. .+.|++-+.+
T Consensus 153 ------~-r-~d~----~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~--~v~i~~H~HN 210 (524)
T PRK12344 153 ------Y-K-ANP----EYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP--GVPLGIHAHN 210 (524)
T ss_pred ------c-c-CCH----HHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECC
Confidence 1 1 222 556677777889999988654 32 44567777788887643 4556888765
No 264
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=46.57 E-value=58 Score=36.75 Aligned_cols=128 Identities=8% Similarity=-0.043 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCCh--hh---hHHHH----HHhc-CCC
Q psy13907 450 LAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAP--HY---VESLL----TSAG-RDV 519 (698)
Q Consensus 450 a~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p--~~---~~~~l----~~l~-~~~ 519 (698)
+.++.+++...-+.|.-||..+ .-|+.+..+++.+... .+...+.++|-+- .. ...++ +.+- ...
T Consensus 77 I~~~~~~~~p~~I~v~~tC~~~---iIGdDi~~v~~~~~~~--~~~~vi~v~t~gf~g~~~~g~~~al~~l~~~~~~~~~ 151 (430)
T cd01981 77 ITRKDKEEKPDLIVLTPTCTSS---ILQEDLQNFVRAAGLS--SKSPVLPLDVNHYRVNELQAADETFEQLVRFYAEKAR 151 (430)
T ss_pred HHHHHHhcCCCEEEEeCCccHH---HHhhCHHHHHHHhhhc--cCCCeEEecCCCccchHHHHHHHHHHHHHHHHhcccc
Confidence 3334444432335555555332 6788888777777432 3456788999321 11 22222 2221 111
Q ss_pred CEEEecC-CCCCcC-CCCcccccC-CChhhHHHHHHHHHHcCCeEEe-ecCCCchHHHHHHHhccccC
Q psy13907 520 PLLCCPN-SGETFD-PGQRIWMNK-DSVPSVDTYVPRWLDTGVKYVG-GCCRTNADDMKNVNQVPVKF 583 (698)
Q Consensus 520 pl~~yPN-aG~~~d-~~~g~~~~~-~~p~~~a~~~~~~~~~G~~iiG-GCCGTtP~hI~al~~~v~~~ 583 (698)
+.. -|. ...++. ..-|.+..+ ..+.++.+..+-+.+.|++++. =.+|++.++|+.+.++--..
T Consensus 152 ~~~-~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~~A~lni 218 (430)
T cd01981 152 PQG-TPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPKAWFNI 218 (430)
T ss_pred ccc-cccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhhhCeEEE
Confidence 100 000 001110 011222111 1134444444444567977754 34578999999987765543
No 265
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=46.55 E-value=3.3e+02 Score=28.40 Aligned_cols=141 Identities=21% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCC
Q psy13907 322 RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDG 401 (698)
Q Consensus 322 ~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~ 401 (698)
+..+++|.|+|... +..|...+...++.+.+++.+.....++.||+.--.. ++++.-.+-.+.
T Consensus 76 ~~a~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v----------------~~~~~~~~~~~~ 138 (259)
T cd07939 76 EAALRCGVTAVHIS-IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFV----------------SVGAEDASRADP 138 (259)
T ss_pred HHHHhCCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE----------------EEeeccCCCCCH
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCC
Q psy13907 402 SEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGD 478 (698)
Q Consensus 402 ~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E---Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~ 478 (698)
+++.+.++.+.+.|+|.|-+= -.-...++...+..+++ ..|+-++|-+.+ ..|.
T Consensus 139 -----------------~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~--~~~~~l~~H~Hn----~~Gl 195 (259)
T cd07939 139 -----------------DFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRA--ATDLPLEFHAHN----DLGL 195 (259)
T ss_pred -----------------HHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHH--hcCCeEEEEecC----CCCh
Q ss_pred cHHHHHHHHHHhCCCCceEEEEcCCC
Q psy13907 479 KFGLIARDVYAKNPAQLVAVGVNCLA 504 (698)
Q Consensus 479 ~l~~~v~~~~~~~~~~~~~iGlNC~~ 504 (698)
.+..++.++.. +....-..+|-.|
T Consensus 196 a~An~laAi~a--G~~~vd~s~~G~G 219 (259)
T cd07939 196 ATANTLAAVRA--GATHVSVTVNGLG 219 (259)
T ss_pred HHHHHHHHHHh--CCCEEEEeccccc
No 266
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=46.52 E-value=2.8e+02 Score=29.93 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCC
Q psy13907 425 IEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGD 478 (698)
Q Consensus 425 i~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~ 478 (698)
++.+.+.|+|.+-++...|+.|++.. + +-.+.+...++..+.+..|+
T Consensus 237 l~~~~~~g~d~~~~d~~~dl~e~~~~------~-g~~~~i~Gnidp~~~l~~gt 283 (326)
T cd03307 237 LEYIAQCGFDGISVDEKVDVKTAKEI------V-GGRAALIGNVSPSQTLLNGT 283 (326)
T ss_pred HHHHHHcCCCeecccccCCHHHHHHH------c-CCceEEEeCCChHHHhcCCC
Confidence 45566789999999888888776422 2 22244556664433455564
No 267
>KOG2949|consensus
Probab=46.43 E-value=1.8e+02 Score=30.25 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc--CCCeEEEEEEecC------CCccCCCCcHHHHHHHHHH-
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY--PGLKAWISFSCKD------EKHTCHGDKFGLIARDVYA- 489 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~--~~~Pv~iS~t~~~------~g~l~~G~~l~~~v~~~~~- 489 (698)
++-+..++.+.++|+|.+=+|--+ +.+..++++. .++||+--+-++. .|.-..|+.+.++++.+-.
T Consensus 117 da~knAv~vmk~~g~~~vK~EgGs-----~~~~~~~~~l~ergipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtA 191 (306)
T KOG2949|consen 117 DAVKNAVRVMKEGGMDAVKLEGGS-----NSRITAAKRLVERGIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETA 191 (306)
T ss_pred HHHHHHHHHHHhcCCceEEEccCc-----HHHHHHHHHHHHcCCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHH
Confidence 455677888988999999999876 4445555532 4689886665432 3445678888877664432
Q ss_pred --hCCCCceEEEEcCCChhhhHHHHHHhc
Q psy13907 490 --KNPAQLVAVGVNCLAPHYVESLLTSAG 516 (698)
Q Consensus 490 --~~~~~~~~iGlNC~~p~~~~~~l~~l~ 516 (698)
....+-+++-+.|..|.....+-..|+
T Consensus 192 mqLqk~Gc~svvlECvP~~~A~~iTs~ls 220 (306)
T KOG2949|consen 192 MQLQKAGCFSVVLECVPPPVAAAITSALS 220 (306)
T ss_pred HHHHhcccceEeeecCChHHHHHHHhccC
Confidence 223677889999987766655555565
No 268
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=46.22 E-value=61 Score=33.86 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=45.9
Q ss_pred eEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEE
Q psy13907 47 VRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI 126 (698)
Q Consensus 47 v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~i 126 (698)
+.|.|=+|-+...+....-|++.+ .+.+.+. ...+|.+++.++|+|.+++|.+ +.++++.+.+. .++|++.
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~---~~~~~~~-~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~----~~~P~~~ 196 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQY---RGDEAGE-QLIADALAYAPAGADLIVMECV-PVELAKQITEA----LAIPLAG 196 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeec---cCHHHHH-HHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHh----CCCCEEE
Confidence 677777665433221111233332 2234444 4566899999999999999987 88887776654 4678765
Q ss_pred EE
Q psy13907 127 SF 128 (698)
Q Consensus 127 Sf 128 (698)
..
T Consensus 197 ~g 198 (240)
T cd06556 197 IG 198 (240)
T ss_pred Ee
Confidence 43
No 269
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=46.09 E-value=4.2e+02 Score=32.58 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-----cCcCHHHHHHHHHHHHhc----CCCeEEEEEEEcCCCccCCCCCHHHHH
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEY----PGLKAWISFSCKDEKHTCHGDKFGLIA 146 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E-----Ti~~l~Ea~aa~~a~~~~----~~~Pv~iSft~~~~g~l~~G~~~~~~~ 146 (698)
.+++...|.+.++.|.+.||+.|=+. |=....+..++.++.+.+ .+.+++++..|.+-+ .+.+
T Consensus 181 l~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~TyFg~~~--------~~~~ 252 (766)
T PLN02475 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVLVETYFADVP--------AEAY 252 (766)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccCCCeEEEEccCCCCC--------HHHH
Confidence 57789999999999999999987654 111223556666666554 246888877764321 1234
Q ss_pred HHHHhhCCCC-ceEEEEcCCChhhhHHHHHHhHhhcccccccccccc------cCCChHHHHHHHHHHHHcCCCCCCCcC
Q psy13907 147 RDVYAKNPAQ-LVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTL------ISRKPIQLLSIELELAAAGKMPSGTTQ 219 (698)
Q Consensus 147 ~~l~~~~~~~-~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~------~~~gP~~~~~~~~~l~~~~~~~~~~~~ 219 (698)
..+. ... ++++|+-++.-. .-|..++....|...-+..|- ..+-+...+..++++.+. .|.
T Consensus 253 ~~l~---~lp~Vd~l~lD~v~~~---~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~----~~~-- 320 (766)
T PLN02475 253 KTLT---SLKGVTAFGFDLVRGT---KTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGI----VGK-- 320 (766)
T ss_pred HHHH---cCCCCCEEEEEecCCh---hhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHh----cCC--
Confidence 4442 356 999999997532 223333221111011122222 266788888888888763 011
Q ss_pred CCcCccEEeecCCCCc
Q psy13907 220 IPFEAPLKAKPNRSLF 235 (698)
Q Consensus 220 ~~~~~~~~~~pnag~p 235 (698)
.-|.+.|+-||-
T Consensus 321 ----~~l~v~psCsLl 332 (766)
T PLN02475 321 ----DKLVVSTSCSLL 332 (766)
T ss_pred ----CcEEEeCCCCCc
Confidence 349999999983
No 270
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.94 E-value=84 Score=33.60 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
+|++...+.|+|+|.+..| +.++++.+++.++ .++|+.+|- |-+.+.+.+.+. .|+|.|.+-+
T Consensus 200 eea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~--~~i~leAsG----------GIt~~ni~~~a~----tGvD~Isvg~ 262 (277)
T PRK05742 200 DELRQALAAGADIVMLDEL-SLDDMREAVRLTA--GRAKLEASG----------GINESTLRVIAE----TGVDYISIGA 262 (277)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC--CCCcEEEEC----------CCCHHHHHHHHH----cCCCEEEECh
Confidence 3455555789999999875 7778888887654 356766553 666666655442 6788887776
No 271
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=45.80 E-value=3.9e+02 Score=28.21 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCEEEecccC-CHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHH---HhCCCCceEE
Q psy13907 423 PRIEALIQGGIDLLAIETLP-AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVY---AKNPAQLVAV 498 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~-~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~---~~~~~~~~~i 498 (698)
..+..|.+.|+|++-+|... +..+++ +.+.+ ...+.+.+.+. +..|+. +++.+.+. +.... -..+
T Consensus 212 ~~~~~l~~~~~d~~~~d~~~~d~~~~~------~~~~~-~~~i~Ggv~~~--~~~~~~-e~i~~~v~~~l~~~~~-~~il 280 (306)
T cd00465 212 DLLEEMIQLGVDVISFDMTVNEPKEAI------EKVGE-KKTLVGGVDPG--YLPATD-EECIAKVEELVERLGP-HYII 280 (306)
T ss_pred HHHHHHHHhCcceEecccccCCHHHHH------HHhCC-CEEEECCCCcc--ccCCCH-HHHHHHHHHHHHHhCC-CeEE
Confidence 44666778899999999876 666553 23222 23445555443 334543 33333332 22222 3566
Q ss_pred EEcC
Q psy13907 499 GVNC 502 (698)
Q Consensus 499 GlNC 502 (698)
+.+|
T Consensus 281 ~~~c 284 (306)
T cd00465 281 NPDC 284 (306)
T ss_pred eCCC
Confidence 7777
No 272
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.65 E-value=3.4e+02 Score=28.94 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEE
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 498 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~i 498 (698)
+...+.++.|.++|+|+|=+ +.|+ +.=+.||-++..+-....+ .+
T Consensus 31 e~s~e~i~~L~~~GaD~iEL--------------------GvPf--------SDPvADGP~Iq~A~~rAL~---~g---- 75 (265)
T COG0159 31 ETSLEIIKTLVEAGADILEL--------------------GVPF--------SDPVADGPTIQAAHLRALA---AG---- 75 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEe--------------------cCCC--------CCcCccCHHHHHHHHHHHH---CC----
Confidence 45678889999999999833 3332 1123566655544333321 11
Q ss_pred EEcCCChhhhHHHHHHhc---CCCCEE--EecCC----CCCc-------CCCCcccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 499 GVNCLAPHYVESLLTSAG---RDVPLL--CCPNS----GETF-------DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 499 GlNC~~p~~~~~~l~~l~---~~~pl~--~yPNa----G~~~-------d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
...+....+++.++ .+.|++ .|-|- |... ...+|-...|..+++-.++.....+.|+..|
T Consensus 76 ----~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 76 ----VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPI 151 (265)
T ss_pred ----CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEE
Confidence 23445555555554 444533 34442 1100 0123323344444443434444446676666
Q ss_pred eecCCCch-HHHHHHHhccc
Q psy13907 563 GGCCRTNA-DDMKNVNQVPV 581 (698)
Q Consensus 563 GGCCGTtP-~hI~al~~~v~ 581 (698)
==|--||| +-|+.+.+.-+
T Consensus 152 ~lvaPtt~~~rl~~i~~~a~ 171 (265)
T COG0159 152 FLVAPTTPDERLKKIAEAAS 171 (265)
T ss_pred EEeCCCCCHHHHHHHHHhCC
Confidence 66766666 55666666554
No 273
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=45.50 E-value=1.3e+02 Score=32.04 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCCEEEE------------ecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDLLAI------------ETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARD 148 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~------------ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~ 148 (698)
+.|...++.+.++|+|.|=+ +-..+.+.+..+++++++..++|+++-++... +.+.+.++.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~-------~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV-------TDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc-------hhHHHHHHH
Confidence 34555666677788998754 22356677778888888755789888875321 135555554
Q ss_pred HHhhCCCCceEE-EEcCCC
Q psy13907 149 VYAKNPAQLVAV-GVNCLA 166 (698)
Q Consensus 149 l~~~~~~~~~aI-GiNC~~ 166 (698)
+. ..++++| -+|++.
T Consensus 175 ~~---~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AE---EAGADGLTLINTLK 190 (296)
T ss_pred HH---HcCCCEEEEECCCc
Confidence 43 2577765 456654
No 274
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=45.46 E-value=2.3e+02 Score=30.77 Aligned_cols=68 Identities=10% Similarity=-0.064 Sum_probs=39.9
Q ss_pred CCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHH
Q psy13907 121 GLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQL 200 (698)
Q Consensus 121 ~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~ 200 (698)
+.|+++|+...+... .-...++.++.+.... ..+++|-+|++.|.... .....-|..+
T Consensus 128 ~~plivsi~g~~~~~--~~~~~~d~~~~~~~~~-~~ad~ielN~scP~~~g-------------------~~~~~~~~~~ 185 (327)
T cd04738 128 GGPLGVNIGKNKDTP--LEDAVEDYVIGVRKLG-PYADYLVVNVSSPNTPG-------------------LRDLQGKEAL 185 (327)
T ss_pred CCeEEEEEeCCCCCc--ccccHHHHHHHHHHHH-hhCCEEEEECCCCCCCc-------------------cccccCHHHH
Confidence 689999996543221 1122444444332211 24899999998874310 0113367888
Q ss_pred HHHHHHHHHc
Q psy13907 201 LSIELELAAA 210 (698)
Q Consensus 201 ~~~~~~l~~~ 210 (698)
.++++.+++.
T Consensus 186 ~~iv~av~~~ 195 (327)
T cd04738 186 RELLTAVKEE 195 (327)
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 275
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=45.17 E-value=4.2e+02 Score=28.44 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=86.3
Q ss_pred CcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---------ccCCHHHHHH---HH
Q psy13907 384 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---------TLPAQEEAMV---LA 451 (698)
Q Consensus 384 ~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E---------Ti~~~~Eaka---a~ 451 (698)
+..|-|-+-=|..|++||.. | .+.+++. ++++.+++.|+|+|=+- -++.-.|.+- ++
T Consensus 14 ~~~imGIlNvTpDSFsdgg~----~---~~~~~a~----~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI 82 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGT----H---NSLIDAV----KHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV 82 (282)
T ss_pred CceEEEEEcCCCCCCCCCCC----C---CCHHHHH----HHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34688887777788887632 2 3555544 56777788999998655 2333346444 55
Q ss_pred HHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC----CChhhhHHHHHHhcCCCCEEEecCC
Q psy13907 452 ELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC----LAPHYVESLLTSAGRDVPLLCCPNS 527 (698)
Q Consensus 452 ~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC----~~p~~~~~~l~~l~~~~pl~~yPNa 527 (698)
+++++..+.| ||+--.. .+++++..+ .+..- +|= ..+ .|...++. ...++++.++-
T Consensus 83 ~~l~~~~~~~--ISIDT~~----------~~va~~AL~---~Gadi--INDI~g~~d~-~~~~~~a~--~~~~vVlmh~~ 142 (282)
T PRK11613 83 EAIAQRFEVW--ISVDTSK----------PEVIRESAK---AGAHI--INDIRSLSEP-GALEAAAE--TGLPVCLMHMQ 142 (282)
T ss_pred HHHHhcCCCe--EEEECCC----------HHHHHHHHH---cCCCE--EEECCCCCCH-HHHHHHHH--cCCCEEEEcCC
Confidence 6665423444 5662111 134444433 12222 332 133 44444433 46899999998
Q ss_pred CCCcCCCCcccccCCCh----hhHHHHHHHHHHcCC---eEE---eecCCCchHHHHHHHhcccc
Q psy13907 528 GETFDPGQRIWMNKDSV----PSVDTYVPRWLDTGV---KYV---GGCCRTNADDMKNVNQVPVK 582 (698)
Q Consensus 528 G~~~d~~~g~~~~~~~p----~~~a~~~~~~~~~G~---~ii---GGCCGTtP~hI~al~~~v~~ 582 (698)
|.|.+.... ..|+.-. ..+.+.+..+.+.|+ +|+ |=.-|-+++|=-++-+.++.
T Consensus 143 g~p~~~~~~-~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~ 206 (282)
T PRK11613 143 GNPKTMQEA-PKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAE 206 (282)
T ss_pred CCCCccccC-CCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHH
Confidence 876532111 1111111 233455566677887 443 21156666554444334333
No 276
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=45.01 E-value=3.6e+02 Score=28.43 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=73.7
Q ss_pred HHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCC
Q psy13907 324 YVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSE 403 (698)
Q Consensus 324 yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~e 403 (698)
.+++|+|.|... +.+|...+....+.+.+++.+....+++.||+. + ..|..++-- +
T Consensus 80 a~~~g~~~i~i~-~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~------------G--~~v~~~~ed--a------- 135 (262)
T cd07948 80 AVETGVDGVDLV-FGTSPFLREASHGKSITEIIESAVEVIEFVKSK------------G--IEVRFSSED--S------- 135 (262)
T ss_pred HHHcCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC------------C--CeEEEEEEe--e-------
Confidence 467899987644 456665555555766655555555555554442 1 234333311 1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcH
Q psy13907 404 YRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKF 480 (698)
Q Consensus 404 y~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l 480 (698)
++ .+.+.+. +.++.+.+.|+|-|.+- |+ -...++...+..+++..+ +.+++-+.+ ..|..+
T Consensus 136 -----~r-~~~~~l~----~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn----~~Gla~ 199 (262)
T cd07948 136 -----FR-SDLVDLL----RVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS--CDIEFHGHN----DTGCAI 199 (262)
T ss_pred -----CC-CCHHHHH----HHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC----CCChHH
Confidence 11 2344444 45556677899887553 43 356677777888876433 455888777 567777
Q ss_pred HHHHHHHH
Q psy13907 481 GLIARDVY 488 (698)
Q Consensus 481 ~~~v~~~~ 488 (698)
..++.++.
T Consensus 200 an~~~a~~ 207 (262)
T cd07948 200 ANAYAALE 207 (262)
T ss_pred HHHHHHHH
Confidence 77777774
No 277
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=44.95 E-value=2.5e+02 Score=33.36 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc----CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCC
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY----PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ 494 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~----~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~ 494 (698)
++--+|+..|.++|+|++=+ |+++..+|++.-.-.++. ...|++.-+-++. ++ -..+++.
T Consensus 41 ~atv~Qi~~l~~aGceiVRv-tv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~--~~-----A~~a~~~-------- 104 (611)
T PRK02048 41 EACVAQAKRIIDAGGEYVRL-TTQGVREAENLMNINIGLRSQGYMVPLVADVHFNP--KV-----ADVAAQY-------- 104 (611)
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCc--HH-----HHHHHHh--------
Confidence 55668999999999999987 999999988766555543 3578877666543 22 1123333
Q ss_pred ceEEEEcCC---Ch----------------------hhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHH
Q psy13907 495 LVAVGVNCL---AP----------------------HYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVD 548 (698)
Q Consensus 495 ~~~iGlNC~---~p----------------------~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a 548 (698)
+..|=+|=. ++ +.+.++++... ..+|+=+=-|+|...+.-...| ..+|+.|.
T Consensus 105 v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y--g~tpe~mV 182 (611)
T PRK02048 105 AEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY--GDTPEGMV 182 (611)
T ss_pred hCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh--CCChHHHH
Confidence 233444441 21 34555555555 6778777788884332111112 34788887
Q ss_pred HHHHHHHH----cC-CeEEeecCCC-chHHHHHHHhccccC
Q psy13907 549 TYVPRWLD----TG-VKYVGGCCRT-NADDMKNVNQVPVKF 583 (698)
Q Consensus 549 ~~~~~~~~----~G-~~iiGGCCGT-tP~hI~al~~~v~~~ 583 (698)
+.+.++++ .| =+|+=-+=.+ .+.-|.+.+..++..
T Consensus 183 eSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 183 ESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred HHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 77766653 44 3333333222 355555555555544
No 278
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=44.85 E-value=5.6e+02 Score=29.83 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCe-EEEEEEecCCCccCCCCcHH---HHHHHHHH
Q psy13907 415 QELIDYHRPRIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLK-AWISFSCKDEKHTCHGDKFG---LIARDVYA 489 (698)
Q Consensus 415 del~~~y~~qi~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~P-v~iS~t~~~~g~l~~G~~l~---~~v~~~~~ 489 (698)
|++++.+ ++...+.|+|++ +|-.+.|+.+.+.+++++++....- ..|++|+.. . .++. +.++.+.+
T Consensus 96 ddvv~~f---v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp----~--~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 96 DEVVDRF---VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSP----I--HTVEGFVEQAKRLLD 166 (499)
T ss_pred hhHHHHH---HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCC----C--CCHHHHHHHHHHHHH
Confidence 4444444 444577899997 6678899999999999999753322 345565532 1 2444 44444432
Q ss_pred hCCCCceEEEEcC----CChhhhHHHHHHhc--C--CCCEEEecC
Q psy13907 490 KNPAQLVAVGVNC----LAPHYVESLLTSAG--R--DVPLLCCPN 526 (698)
Q Consensus 490 ~~~~~~~~iGlNC----~~p~~~~~~l~~l~--~--~~pl~~yPN 526 (698)
.++..|.+-= ..|..+..+++.+. . +.||.++-.
T Consensus 167 ---~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 167 ---MGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred ---cCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 4555555533 36899999999886 3 688887654
No 279
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.82 E-value=4.2e+02 Score=29.09 Aligned_cols=124 Identities=22% Similarity=0.147 Sum_probs=66.8
Q ss_pred HHHHHHHhCCCCEEEecccCCH---------------------------HHHHHHHHHHHhc-CCCeEEEEEEecCCCcc
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQ---------------------------EEAMVLAELIKEY-PGLKAWISFSCKDEKHT 474 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~---------------------------~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l 474 (698)
+.++.+.+.|+..+..-|++.- ......++-+++. .+.|+++|+.... .+
T Consensus 73 ~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~--~~ 150 (344)
T PRK05286 73 EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNK--DT 150 (344)
T ss_pred HHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCC--CC
Confidence 4555567778888777776542 0022233333332 4689999996542 12
Q ss_pred CCCCcHHHHHHHHHHhCCCCceEEEEcCCC-----------hhhhHHHHHHhc---C----CCCEEEecCCCCCcCCCCc
Q psy13907 475 CHGDKFGLIARDVYAKNPAQLVAVGVNCLA-----------PHYVESLLTSAG---R----DVPLLCCPNSGETFDPGQR 536 (698)
Q Consensus 475 ~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~-----------p~~~~~~l~~l~---~----~~pl~~yPNaG~~~d~~~g 536 (698)
..+.+..+.++.+... ....+++-+|+.- ++.+..+++.++ . +.||++.-..+
T Consensus 151 ~~~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~-------- 221 (344)
T PRK05286 151 PLEDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD-------- 221 (344)
T ss_pred CcccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC--------
Confidence 2233444444433221 1235677777632 234556666665 2 27887765431
Q ss_pred ccccCCChhhHHHHHHHHHHcCCeEE
Q psy13907 537 IWMNKDSVPSVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 537 ~~~~~~~p~~~a~~~~~~~~~G~~ii 562 (698)
.+.+++.+.++.+.+.|+..|
T Consensus 222 -----~~~~~~~~ia~~l~~~Gadgi 242 (344)
T PRK05286 222 -----LSDEELDDIADLALEHGIDGV 242 (344)
T ss_pred -----CCHHHHHHHHHHHHHhCCcEE
Confidence 123456667777777775444
No 280
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=44.77 E-value=6.1e+02 Score=30.20 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=58.1
Q ss_pred HHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHH---HHHHHHHHhCCCCceEEEE
Q psy13907 425 IEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG---LIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 425 i~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~---~~v~~~~~~~~~~~~~iGl 500 (698)
++...+.|+|.| ++-..+++.+++.+++++++. +.-+-..++...+. -.++. +.++.+.+ .++..|.+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p----~~t~~~~~~~a~~l~~---~Gad~I~i 173 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKA-GAHVQGTISYTTSP----VHTIEKYVELAKELEE---MGCDSICI 173 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHc-CCEEEEEEEeccCC----CCCHHHHHHHHHHHHH---cCCCEEEE
Confidence 333567899987 455778999999999999974 44444333222211 13444 44444432 45555544
Q ss_pred cC----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 501 NC----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 501 NC----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
-= ..|..+..+++.+. .+.||.+|..
T Consensus 174 ~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~H 205 (592)
T PRK09282 174 KDMAGLLTPYAAYELVKALKEEVDLPVQLHSH 205 (592)
T ss_pred CCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 22 35899999999887 4577777654
No 281
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.70 E-value=1.4e+02 Score=33.80 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=42.4
Q ss_pred CCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHh-cCCC
Q psy13907 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKE-YPGL 460 (698)
Q Consensus 383 ~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi-~~~~Eakaa~~a~~~-~~~~ 460 (698)
.+..|+.++|+. ....++++.|+++|+|+|.+-+- .+-......+..+++ ++++
T Consensus 140 ~~l~v~aavg~~------------------------~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 140 NKLRVGAAVSID------------------------IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL 195 (404)
T ss_pred cCeEEEEEEeCC------------------------HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence 457899999983 11568899999999999998643 344556666777774 4567
Q ss_pred eEEEEE
Q psy13907 461 KAWISF 466 (698)
Q Consensus 461 Pv~iS~ 466 (698)
++++..
T Consensus 196 ~vi~g~ 201 (404)
T PRK06843 196 DLIAGN 201 (404)
T ss_pred cEEEEe
Confidence 776544
No 282
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=44.62 E-value=68 Score=32.62 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCEEEEec---------CcCHHHHHHHHHHHHhc
Q psy13907 86 RIEALIQGGIDLLAIET---------LPAQEEAMVLAELIKEY 119 (698)
Q Consensus 86 qi~~l~~~GVD~il~ET---------i~~l~Ea~aa~~a~~~~ 119 (698)
+++.+++.|+|+|=+=. ++.-+|++.++.+++..
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i 66 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAI 66 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 37778889999987742 34556777666666654
No 283
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=44.56 E-value=99 Score=36.03 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=12.8
Q ss_pred HcCCeEEe-ecCCCchHHHHHHHhccc
Q psy13907 556 DTGVKYVG-GCCRTNADDMKNVNQVPV 581 (698)
Q Consensus 556 ~~G~~iiG-GCCGTtP~hI~al~~~v~ 581 (698)
+.|+++.. =.+|++.++|+.+.++--
T Consensus 186 ~~Gi~vn~v~p~g~s~~di~~l~~A~~ 212 (519)
T PRK02910 186 TLGIDVNVVAPLGASPADLKRLPAAWF 212 (519)
T ss_pred HcCCeEEEEeCCCCCHHHHHhcccCcE
Confidence 45644422 124566666666654433
No 284
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=44.24 E-value=4.1e+02 Score=29.12 Aligned_cols=95 Identities=9% Similarity=0.071 Sum_probs=54.8
Q ss_pred CCCCHHHHHH---HHHHHHHHHHhCCCCEEEEec----------Cc-----------C----HHHHHHHHHHHHhcCCCe
Q psy13907 72 DSTTPQELID---YHRPRIEALIQGGIDLLAIET----------LP-----------A----QEEAMVLAELIKEYPGLK 123 (698)
Q Consensus 72 ~~~s~eel~~---~~~~qi~~l~~~GVD~il~ET----------i~-----------~----l~Ea~aa~~a~~~~~~~P 123 (698)
..+|.+|+.+ .|..-++...++|.|.+=+=. -| + ..-+..+++++++..+.+
T Consensus 129 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 3577666554 455445545678999885443 11 1 133556777777755555
Q ss_pred EEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCC-ceEEEEcCCC
Q psy13907 124 AWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ-LVAVGVNCLA 166 (698)
Q Consensus 124 v~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~-~~aIGiNC~~ 166 (698)
+++.+-+..+....+|.++++.+..+......+ +|.|=|-+..
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~ 252 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGS 252 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 555554444334456788887766543333455 7877775543
No 285
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.92 E-value=3.7e+02 Score=28.33 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=32.5
Q ss_pred hhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCH
Q psy13907 308 AFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSE 352 (698)
Q Consensus 308 ~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~ 352 (698)
-..++.+|.+.++-+.--++|+.++.--.|- ++-+-.++.|+..
T Consensus 22 PC~vEs~e~~~~~a~~~~~~g~~~~r~g~~k-pRts~~sf~G~G~ 65 (250)
T PRK13397 22 PCSIESYDHIRLAASSAKKLGYNYFRGGAYK-PRTSAASFQGLGL 65 (250)
T ss_pred cCccCCHHHHHHHHHHHHHcCCCEEEecccC-CCCCCcccCCCCH
Confidence 3468899999999888889999999998885 4433334446633
No 286
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=43.90 E-value=2.6e+02 Score=31.62 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCC-CeEEEEEEe
Q psy13907 414 PQELIDYHRPRIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPG-LKAWISFSC 468 (698)
Q Consensus 414 ~del~~~y~~qi~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~-~Pv~iS~t~ 468 (698)
.|++++.|-+ ...+.|+|+| +|-.+.|..|.+.++++++++.. .-..||.|+
T Consensus 96 aDDvVe~Fv~---ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~ 149 (472)
T COG5016 96 ADDVVEKFVE---KAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTT 149 (472)
T ss_pred chHHHHHHHH---HHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEecc
Confidence 4777777744 4578899998 78899999999999999998522 233444444
No 287
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=43.78 E-value=3.6e+02 Score=27.95 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEe
Q psy13907 81 DYHRPRIEALIQGGIDLLAIE 101 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~E 101 (698)
+...+.++.+.++|||+|=+.
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 14 ETTLEILKALVEAGADIIELG 34 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEEC
Confidence 355567888888999999887
No 288
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=43.71 E-value=3.3e+02 Score=26.83 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCEEEe-----cccCCHHHHHHHHHHHHhcCCCeEEEEEEec
Q psy13907 421 HRPRIEALIQGGIDLLAI-----ETLPAQEEAMVLAELIKEYPGLKAWISFSCK 469 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~-----ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~ 469 (698)
+.+.++.+.++|+|.+-+ .+.+........+..+++..+.|+-+-+.+.
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~ 67 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE 67 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC
Confidence 667899999999999977 3333332112334445443345655555554
No 289
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=43.50 E-value=3.8e+02 Score=29.16 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe------cCcCHHHHHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHH
Q psy13907 77 QELIDYHRPRIEALIQGGIDLLAIE------TLPAQEEAMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIAR 147 (698)
Q Consensus 77 eel~~~~~~qi~~l~~~GVD~il~E------Ti~~l~Ea~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~ 147 (698)
.++.+.+++.++.|.+ ||+.|=|- |-+...++..+.++.+.. .+.++++.+.|... + + ..+.
T Consensus 157 ~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~~~~~~i~l~tyfg~~-----~--~-~~~~ 227 (326)
T PRK08575 157 EDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAKNVNIEKHLMTYFEIN-----N--L-KRLD 227 (326)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHhcCCCCEEEECCCCCc-----c--c-cHHH
Confidence 3445555566666665 99987553 222333556666666543 24577776655421 1 1 1344
Q ss_pred HHHhhCCCCceEEEEcCCC-hhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccE
Q psy13907 148 DVYAKNPAQLVAVGVNCLA-PHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPL 226 (698)
Q Consensus 148 ~l~~~~~~~~~aIGiNC~~-p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 226 (698)
.+. ...++++|+-|+. ++.+..+.+.+....--+++=+--...-+-|+++...+++..+. | ..-|
T Consensus 228 ~l~---~~~vd~l~ld~~~~~~~l~~~~~~~~~k~l~~GviD~rn~~vE~~eev~~~i~~~~~~----------~-~~~l 293 (326)
T PRK08575 228 ILF---SLPVTYFGIDVIENLKKLGRVYTYLKGRKVYLGILNARNTKMEKISTIRRIVNKVKRK----------G-VSDI 293 (326)
T ss_pred HHh---cCCCcEEEEEecCChhHHHHHHhhCCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHHhc----------C-CCeE
Confidence 442 3689999999964 33333332222111000122222224467899999998887653 1 1348
Q ss_pred EeecCCCC
Q psy13907 227 KAKPNRSL 234 (698)
Q Consensus 227 ~~~pnag~ 234 (698)
.+-||.|+
T Consensus 294 ~v~pdcgl 301 (326)
T PRK08575 294 IVGNNTLF 301 (326)
T ss_pred EEeCCCCc
Confidence 99999996
No 290
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=43.20 E-value=62 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=15.4
Q ss_pred CCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 93 GGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 93 ~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
..+|++++-|-++. ....+..+++. +++|+
T Consensus 61 ~~~D~V~I~tp~~~-h~~~~~~~l~~--g~~v~ 90 (120)
T PF01408_consen 61 EDVDAVIIATPPSS-HAEIAKKALEA--GKHVL 90 (120)
T ss_dssp TTESEEEEESSGGG-HHHHHHHHHHT--TSEEE
T ss_pred hcCCEEEEecCCcc-hHHHHHHHHHc--CCEEE
Confidence 45666666654443 34445555553 44554
No 291
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=43.20 E-value=3.2e+02 Score=28.61 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCC-CCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEE
Q psy13907 420 YHRPRIEALIQGG-IDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 498 (698)
Q Consensus 420 ~y~~qi~~L~~~G-vDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~i 498 (698)
.|.+.++.+++.| +|++=+|--.+-...+..+..+++ .+..+++|+. +-..+++-..+.+.++.+.+ .+.+.+
T Consensus 96 ~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H--~f~~tP~~~~l~~~~~~~~~---~gaDiv 169 (253)
T PRK02412 96 EYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHE-HGVKVVLSYH--DFEKTPPKEEIVERLRKMES---LGADIV 169 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHH-cCCEEEEeeC--CCCCCcCHHHHHHHHHHHHH---hCCCEE
Confidence 3444555667778 899999975555566666677765 4678999985 33334444445455555432 233444
Q ss_pred EEcC--CChhhhHHHHHHh---c---CCCCEEEecCC
Q psy13907 499 GVNC--LAPHYVESLLTSA---G---RDVPLLCCPNS 527 (698)
Q Consensus 499 GlNC--~~p~~~~~~l~~l---~---~~~pl~~yPNa 527 (698)
=+-+ ..+.+...+++.. + .+.|++++.-+
T Consensus 170 Kia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG 206 (253)
T PRK02412 170 KIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMG 206 (253)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4444 4565555555433 2 46888888754
No 292
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=43.15 E-value=4e+02 Score=27.58 Aligned_cols=129 Identities=11% Similarity=0.092 Sum_probs=71.2
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-
Q psy13907 424 RIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC- 502 (698)
Q Consensus 424 qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC- 502 (698)
-.+.+.+.|-.-++.+- ...-.+-.+..+++ .+.|+.+++.- .+-+.+.++++.+.+ ....|-+||
T Consensus 40 aa~~~~~~~~~ef~~~~--~~~~~~~~~~~~~~-~~~p~~vqi~g------~~~~~~~~aa~~~~~----~~~~ielN~g 106 (233)
T cd02911 40 AARKLVKRGRKEFLPDD--PLEFIEGEIKALKD-SNVLVGVNVRS------SSLEPLLNAAALVAK----NAAILEINAH 106 (233)
T ss_pred HHHHHHhcCCccccccc--hHHHHHHHHHHhhc-cCCeEEEEecC------CCHHHHHHHHHHHhh----cCCEEEEECC
Confidence 34556666654444333 12222233334444 35788888732 122344455655532 236888998
Q ss_pred CC----------------hhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeec
Q psy13907 503 LA----------------PHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGC 565 (698)
Q Consensus 503 ~~----------------p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGC 565 (698)
|. |+.+..+++.+. .+.||++.=..| | + ++..+.++.+.+.|+.++-+-
T Consensus 107 CP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g---------~--~---~~~~~la~~l~~aG~d~ihv~ 172 (233)
T cd02911 107 CRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAG---------V--D---VDDEELARLIEKAGADIIHVD 172 (233)
T ss_pred CCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCC---------c--C---cCHHHHHHHHHHhCCCEEEEC
Confidence 41 555666677666 678998877664 3 1 234455566667887777664
Q ss_pred CCCc--hHHHHHHHhc
Q psy13907 566 CRTN--ADDMKNVNQV 579 (698)
Q Consensus 566 CGTt--P~hI~al~~~ 579 (698)
++.. +.+++.|++.
T Consensus 173 ~~~~g~~ad~~~I~~i 188 (233)
T cd02911 173 AMDPGNHADLKKIRDI 188 (233)
T ss_pred cCCCCCCCcHHHHHHh
Confidence 4432 4455555554
No 293
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=43.14 E-value=3e+02 Score=32.68 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc----CCCeEEEEEEEcC
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY----PGLKAWISFSCKD 132 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~----~~~Pv~iSft~~~ 132 (698)
+.--+|+..|.++|+|++=+ |+|+.++++++-...++. ..+|++.-+.|+.
T Consensus 41 ~atv~Qi~~l~~aGceiVRv-tv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~ 95 (611)
T PRK02048 41 EACVAQAKRIIDAGGEYVRL-TTQGVREAENLMNINIGLRSQGYMVPLVADVHFNP 95 (611)
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCc
Confidence 34556899999999999985 899999988776655543 3689998887753
No 294
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=42.92 E-value=1.4e+02 Score=33.44 Aligned_cols=71 Identities=15% Similarity=0.054 Sum_probs=38.9
Q ss_pred hcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCCh
Q psy13907 118 EYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKP 197 (698)
Q Consensus 118 ~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP 197 (698)
++.+.|+++|+.- +.+.++..+.+...+..++|+|=+|-+.|... ..+... ..+-.-|
T Consensus 110 ~~~~~pvIaSi~~--------~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-----~~r~~g---------~~~gq~~ 167 (385)
T PLN02495 110 EYPDRILIASIME--------EYNKDAWEEIIERVEETGVDALEINFSCPHGM-----PERKMG---------AAVGQDC 167 (385)
T ss_pred hCCCCcEEEEccC--------CCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-----CcCccc---------hhhccCH
Confidence 4457899999741 23444444333222346799999999886431 000000 0012257
Q ss_pred HHHHHHHHHHHHc
Q psy13907 198 IQLLSIELELAAA 210 (698)
Q Consensus 198 ~~~~~~~~~l~~~ 210 (698)
+.+.++++.+...
T Consensus 168 e~~~~i~~~Vk~~ 180 (385)
T PLN02495 168 DLLEEVCGWINAK 180 (385)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777877665
No 295
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=42.87 E-value=4.9e+02 Score=28.66 Aligned_cols=128 Identities=14% Similarity=0.251 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHH----HHHHHHHHHHHHHhCCC--
Q psy13907 22 RDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQE----LIDYHRPRIEALIQGGI-- 95 (698)
Q Consensus 22 ~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~ee----l~~~~~~qi~~l~~~GV-- 95 (698)
...+++||+|.+. ...|..++-=.-.+.-||.-..|.-....+.++ ++++-++-++.|.+.|+
T Consensus 58 ~~~~~~akrak~~-----------Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~p 126 (332)
T PF07745_consen 58 EDVIALAKRAKAA-----------GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTP 126 (332)
T ss_dssp HHHHHHHHHHHHT-----------T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--E
T ss_pred HHHHHHHHHHHHC-----------CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 3567888888652 345556665222333456666666555566555 55777778888988886
Q ss_pred CEEEE--ecC----------cCHH---H-HHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCce
Q psy13907 96 DLLAI--ETL----------PAQE---E-AMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 158 (698)
Q Consensus 96 D~il~--ETi----------~~l~---E-a~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~ 158 (698)
|++-+ |+- .+.. . ++++++++|+. ++.+|++.+.-..+ -....-.+..+.. .....|
T Consensus 127 d~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~-----~~~~~~~f~~l~~-~g~d~D 200 (332)
T PF07745_consen 127 DMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGD-----NDLYRWFFDNLKA-AGVDFD 200 (332)
T ss_dssp SEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTS-----HHHHHHHHHHHHH-TTGG-S
T ss_pred cEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCc-----hHHHHHHHHHHHh-cCCCcc
Confidence 44433 221 1222 2 44667888875 56888888753211 1123455555543 234579
Q ss_pred EEEEcCCC
Q psy13907 159 AVGVNCLA 166 (698)
Q Consensus 159 aIGiNC~~ 166 (698)
.||++.=.
T Consensus 201 viGlSyYP 208 (332)
T PF07745_consen 201 VIGLSYYP 208 (332)
T ss_dssp EEEEEE-S
T ss_pred eEEEecCC
Confidence 99999843
No 296
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=42.79 E-value=2.9e+02 Score=33.34 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHh----cCCCeEEEEEEEc
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE----YPGLKAWISFSCK 131 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~----~~~~Pv~iSft~~ 131 (698)
+.--+|+..|.++|+|++=+ |+|+.+|++++-..-+. ...+|++.-+.|+
T Consensus 110 eatv~Qi~~l~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 163 (733)
T PLN02925 110 EATVDQVMRIADKGADIVRI-TVQGKKEADACFEIKNTLVQKGYNIPLVADIHFA 163 (733)
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC
Confidence 34556899999999999985 89999998876555443 1468999877775
No 297
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=42.71 E-value=83 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcC-CCeEEEEE
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYP-GLKAWISF 466 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~-~~Pv~iS~ 466 (698)
+|++..+++|+|.+++.++ +..+++.++..+++.. +.-+.+|.
T Consensus 91 ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~ie~SG 134 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVKIEASG 134 (169)
T ss_dssp HHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSEEEEES
T ss_pred HHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 4566667799999999996 6799999999888643 33343333
No 298
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=42.64 E-value=4.3e+02 Score=27.81 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecc---------cCCHHHHH---HHHHHHHhcCCCeEEEEEEecCCCccCCCCc
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIET---------LPAQEEAM---VLAELIKEYPGLKAWISFSCKDEKHTCHGDK 479 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ET---------i~~~~Eak---aa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~ 479 (698)
.+++++.+ +++.+.+.|+|+|=+-. ++--.|.+ .++.++++..+.|+ |+- . .+
T Consensus 21 ~~~~~~~~----~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SID--T----~~--- 85 (257)
T cd00739 21 LSLDKAVA----HAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SVD--T----FR--- 85 (257)
T ss_pred CCHHHHHH----HHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEe--C----CC---
Confidence 56666654 45556679999997732 22234443 45666665445664 552 1 11
Q ss_pred HHHHHHHHHHhCCCCceEEEEcCCC-hhhhHHHHHHhcCCCCEEEecCCCCCcC
Q psy13907 480 FGLIARDVYAKNPAQLVAVGVNCLA-PHYVESLLTSAGRDVPLLCCPNSGETFD 532 (698)
Q Consensus 480 l~~~v~~~~~~~~~~~~~iGlNC~~-p~~~~~~l~~l~~~~pl~~yPNaG~~~d 532 (698)
.+++++..+. +.. ..=-++... .+.|.++++.. +.++++.++.|.|.+
T Consensus 86 -~~v~e~al~~-G~~-iINdisg~~~~~~~~~l~~~~--~~~vV~m~~~g~p~~ 134 (257)
T cd00739 86 -AEVARAALEA-GAD-IINDVSGGSDDPAMLEVAAEY--GAPLVLMHMRGTPKT 134 (257)
T ss_pred -HHHHHHHHHh-CCC-EEEeCCCCCCChHHHHHHHHc--CCCEEEECCCCCCcc
Confidence 1444444332 222 211133321 23555555554 688999998887653
No 299
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.53 E-value=4.4e+02 Score=27.93 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCc--CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDLLAIE-TLP--AQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~E-Ti~--~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
+++.+.++.+.+.|+|.|.+- |+- ...++...++.+++. ++ +-+++.+.++ .|.-+..++..+.
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd----~GlA~AN~laA~~ 216 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD--EKLALHFHDT----RGQALANILAALE 216 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC--CeEEEEECCC----CChHHHHHHHHHH
Confidence 355556666777899988775 443 577888888888863 23 5567777766 4666677776664
No 300
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.46 E-value=5.8e+02 Score=29.27 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=58.9
Q ss_pred HHHHHhCCCCEEE-ecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-
Q psy13907 425 IEALIQGGIDLLA-IETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC- 502 (698)
Q Consensus 425 i~~L~~~GvDlll-~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC- 502 (698)
++...+.|+|.+- +-..++..+.+.+++.+++. +.-+-++++..++.+ -+-.-+.+.++.+.+ .+++.|.+-=
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~-G~~v~~~i~~t~~p~-~~~~~~~~~a~~l~~---~Gad~I~i~Dt 176 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKA-GGHAQVAISYTTSPV-HTIDYFVKLAKEMQE---MGADSICIKDM 176 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc-CCeEEEEEEeecCCC-CCHHHHHHHHHHHHH---cCCCEEEEcCC
Confidence 4445678999874 44667888888899999874 555444444333222 111122344554433 4555555533
Q ss_pred ---CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 503 ---LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 503 ---~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
..|..+..+++.+. .+.||.+|-.
T Consensus 177 ~G~l~P~~v~~lv~alk~~~~~pi~~H~H 205 (448)
T PRK12331 177 AGILTPYVAYELVKRIKEAVTVPLEVHTH 205 (448)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 36899999999886 4577777653
No 301
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=42.41 E-value=1.7e+02 Score=30.99 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCEEEEecCcC-----HHHHHHHHHHHHhcCCCeEE
Q psy13907 84 RPRIEALIQGGIDLLAIETLPA-----QEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi~~-----l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
.+-++.|.+.|||++=+| +|- -.|+.++.+-+...+++|++
T Consensus 189 ~~a~k~fsd~GadvlKve-vPvyveGe~~ea~~~f~~~~~~~~lP~i 234 (306)
T COG3684 189 IEAMKEFSDSGADVLKVE-VPVYVEGEQEEAAAAFQRQNDHINLPWI 234 (306)
T ss_pred HHHHHHhccCCCceEEee-cceeccCccHHHHHHHHHhhcCCCCCeE
Confidence 345667888999999999 677 77888877777766789965
No 302
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=1.2e+02 Score=33.55 Aligned_cols=72 Identities=24% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Q psy13907 21 IRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAI 100 (698)
Q Consensus 21 n~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ 100 (698)
+++++++|+++ +++++|+...=+... ++. ...+.++.|.+.|||.|+
T Consensus 51 l~e~i~~ah~~------------gkk~~V~~N~~~~~~-------------------~~~-~~~~~l~~l~e~GvDavi- 97 (347)
T COG0826 51 LAEAVELAHSA------------GKKVYVAVNTLLHND-------------------ELE-TLERYLDRLVELGVDAVI- 97 (347)
T ss_pred HHHHHHHHHHc------------CCeEEEEeccccccc-------------------hhh-HHHHHHHHHHHcCCCEEE-
Confidence 66677777654 356899886544422 111 255577778899999998
Q ss_pred ecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEc
Q psy13907 101 ETLPAQEEAMVLAELIKEY-PGLKAWISFSCK 131 (698)
Q Consensus 101 ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~ 131 (698)
+.|+ +++..+++. +++|+.+|....
T Consensus 98 --v~Dp----g~i~l~~e~~p~l~ih~S~q~~ 123 (347)
T COG0826 98 --VADP----GLIMLARERGPDLPIHVSTQAN 123 (347)
T ss_pred --EcCH----HHHHHHHHhCCCCcEEEeeeEe
Confidence 5666 566666653 679999998764
No 303
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=42.24 E-value=1.3e+02 Score=35.14 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCEEEEecCc-CHHHHHHHHHHHHh-cCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEE
Q psy13907 84 RPRIEALIQGGIDLLAIETLP-AQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVG 161 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi~-~l~Ea~aa~~a~~~-~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIG 161 (698)
.+|++.|+++|+|+|.+-+-. ........++.+|+ +++.++|+.=. .+.+++...+. .++|+|-
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v----------~t~e~a~~a~~----aGaD~i~ 315 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV----------VTMYQAQNLIQ----AGVDGLR 315 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC----------CCHHHHHHHHH----cCcCEEE
Confidence 479999999999999998743 22333356677776 35677764211 23455554442 6888875
Q ss_pred E
Q psy13907 162 V 162 (698)
Q Consensus 162 i 162 (698)
+
T Consensus 316 v 316 (505)
T PLN02274 316 V 316 (505)
T ss_pred E
Confidence 5
No 304
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=41.93 E-value=57 Score=33.27 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCEEEEecCc--CHHHHHHHHHHHHhcCCCeEEE
Q psy13907 83 HRPRIEALIQGGIDLLAIETLP--AQEEAMVLAELIKEYPGLKAWI 126 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il~ETi~--~l~Ea~aa~~a~~~~~~~Pv~i 126 (698)
....++.+.+.|+|.|++=.-. +.+++...++++|+..++|+|+
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil 58 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL 58 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE
Confidence 3446667788999999997333 5577777889999867899998
No 305
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=41.69 E-value=5.2e+02 Score=31.71 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=44.3
Q ss_pred ecCCcC-CCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhCCCCEEEec-----ccCCHHHHHHHHHHHHhc----C
Q psy13907 390 SLGSYG-AFLHDGSEYRGDYIDST-TPQELIDYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEY----P 458 (698)
Q Consensus 390 siGP~~-~~l~~~~ey~g~y~~~~-t~del~~~y~~qi~~L~~~GvDlll~E-----Ti~~~~Eakaa~~a~~~~----~ 458 (698)
-+||+. ..++.. .+.|.+.. -.+++...|.+.++.|.+.||+.|-+. +-.+..+..++..+.+.. .
T Consensus 150 l~GP~T~l~lsk~---~~~y~~~~~ll~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~ 226 (750)
T TIGR01371 150 LLGPITFLKLSKA---VEEPFEPLSLLEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALS 226 (750)
T ss_pred EECHHHHHHHhCc---cCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccC
Confidence 578986 334421 11233222 248899999999999999999987442 222233555555555543 2
Q ss_pred CCeEEEEEEe
Q psy13907 459 GLKAWISFSC 468 (698)
Q Consensus 459 ~~Pv~iS~t~ 468 (698)
+.++++...+
T Consensus 227 ~~ki~l~tyF 236 (750)
T TIGR01371 227 GLKLLLQTYF 236 (750)
T ss_pred CceEEEECCC
Confidence 3455555443
No 306
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=41.67 E-value=1.3e+02 Score=34.86 Aligned_cols=41 Identities=5% Similarity=-0.084 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHcCCeEEee-cCCCchHHHHHHHhccccCC
Q psy13907 544 VPSVDTYVPRWLDTGVKYVGG-CCRTNADDMKNVNQVPVKFS 584 (698)
Q Consensus 544 p~~~a~~~~~~~~~G~~iiGG-CCGTtP~hI~al~~~v~~~~ 584 (698)
+.++.+.-+-+.+.|+++..= +.|++.++|+.+.++--..-
T Consensus 174 ~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv 215 (511)
T TIGR01278 174 RHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNIC 215 (511)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEE
Confidence 444444333334567555432 34678888888766655443
No 307
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=41.65 E-value=1.8e+02 Score=30.28 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCCC--CEEEecc-----cCCHHHHHHHHHHHHhcCCCeEEEE-EEecC
Q psy13907 417 LIDYHRPRIEALIQGGI--DLLAIET-----LPAQEEAMVLAELIKEYPGLKAWIS-FSCKD 470 (698)
Q Consensus 417 l~~~y~~qi~~L~~~Gv--Dlll~ET-----i~~~~Eakaa~~a~~~~~~~Pv~iS-~t~~~ 470 (698)
-.+.|.+.++.|.+.|+ |.|-++. .+++.+++..+..+.+. ++||+|| +.+..
T Consensus 134 k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~-g~pi~iTE~dv~~ 194 (254)
T smart00633 134 KRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASL-GLEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHc-CCceEEEEeecCC
Confidence 34688899999988876 6666542 26788889888888874 8999998 66654
No 308
>PLN02735 carbamoyl-phosphate synthase
Probab=41.54 E-value=6.2e+02 Score=32.56 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=44.3
Q ss_pred EEEcCCChhhhHHHHHHh--HhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeecCCCCcee
Q psy13907 160 VGVNCLAPHYVESLLTSA--EVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFET 237 (698)
Q Consensus 160 IGiNC~~p~~i~~~l~~~--~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~ 237 (698)
+.+=.++++.+..+-++. ++....+++|.-.+..-...++..+..++ . +-|+.++|..|
T Consensus 687 i~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~---i------------GyPvvVKP~~g---- 747 (1102)
T PLN02735 687 VKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKR---I------------GYPVVVRPSYV---- 747 (1102)
T ss_pred eEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHh---c------------CCCeEEEeCCC----
Confidence 444457888888777664 44445567777665544445554443322 2 67999999987
Q ss_pred ecCeeeeeeec
Q psy13907 238 YHGVFVNVQYN 248 (698)
Q Consensus 238 ~~~~~~~~~~~ 248 (698)
.+|+-+.+.++
T Consensus 748 ~gG~G~~iV~~ 758 (1102)
T PLN02735 748 LGGRAMEIVYS 758 (1102)
T ss_pred CCCCcEEEECC
Confidence 45666766775
No 309
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=41.52 E-value=1.2e+02 Score=34.96 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCc-CHHHHHHHHHHHHh-cCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCce
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLP-AQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 158 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~-~l~Ea~aa~~a~~~-~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~ 158 (698)
....++++.|+++|||.|++-+-. ...-+...++.+|+ ++++|+|+.+ +.+.+.+...+. .|++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~----------~~t~~~~~~l~~----~G~d 289 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN----------VVSAEGVRDLLE----AGAN 289 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec----------cCCHHHHHHHHH----hCCC
Confidence 355689999999999999998543 44455666777775 3689999833 334544444332 5777
Q ss_pred EEE
Q psy13907 159 AVG 161 (698)
Q Consensus 159 aIG 161 (698)
+|.
T Consensus 290 ~i~ 292 (475)
T TIGR01303 290 IIK 292 (475)
T ss_pred EEE
Confidence 764
No 310
>PRK13753 dihydropteroate synthase; Provisional
Probab=41.21 E-value=4.8e+02 Score=27.99 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCEEEEe---cCcCH------HHHH---HHHHHHHh
Q psy13907 84 RPRIEALIQGGIDLLAIE---TLPAQ------EEAM---VLAELIKE 118 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~E---Ti~~l------~Ea~---aa~~a~~~ 118 (698)
..+++.+++.|+|+|=+- |=|.. +|++ .+++++++
T Consensus 28 ~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~ 74 (279)
T PRK13753 28 VTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSD 74 (279)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 447777888999997664 32433 4777 55555554
No 311
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.19 E-value=1.1e+02 Score=32.59 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh-cCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEc
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 501 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~-~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlN 501 (698)
+|+...+++|+|+|++.++ ++.+++.++..++. .++..+.+|. |-++..+.+... .+++.|.+-
T Consensus 193 eea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAsG----------gIt~~ni~~ya~----~GvD~IsvG 257 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEASG----------NITLENINAYAK----SGVDAISSG 257 (273)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEEC----------CCCHHHHHHHHH----cCCCEEEeC
Confidence 4555566789999999885 89999999987653 2233344333 344555555441 455566555
Q ss_pred C
Q psy13907 502 C 502 (698)
Q Consensus 502 C 502 (698)
+
T Consensus 258 ~ 258 (273)
T PRK05848 258 S 258 (273)
T ss_pred h
Confidence 5
No 312
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=40.89 E-value=3.7e+02 Score=29.71 Aligned_cols=141 Identities=23% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCC
Q psy13907 322 RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDG 401 (698)
Q Consensus 322 ~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~ 401 (698)
+.-+++|+|.|... +.+|...+...++++.+++.+....++++||+.-... .+++.-++-.+.
T Consensus 78 ~~a~~~g~~~i~i~-~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v----------------~~~~eda~r~~~ 140 (363)
T TIGR02090 78 DKAIDCGVDSIHTF-IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV----------------EFSAEDATRTDI 140 (363)
T ss_pred HHHHHcCcCEEEEE-EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE----------------EEEEeecCCCCH
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-EecccCC--HHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCC
Q psy13907 402 SEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLL-AIETLPA--QEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGD 478 (698)
Q Consensus 402 ~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDll-l~ETi~~--~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~ 478 (698)
+++.+.++.+.+.|+|-| +.-|+-. ..+....+..+++ ..++-++|-+.+ ..|-
T Consensus 141 -----------------~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~--~~~~~l~~H~Hn----d~Gl 197 (363)
T TIGR02090 141 -----------------DFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKE--NVKLPISVHCHN----DFGL 197 (363)
T ss_pred -----------------HHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhc--ccCceEEEEecC----CCCh
Q ss_pred cHHHHHHHHHHhCCCCceEEEEcCCC
Q psy13907 479 KFGLIARDVYAKNPAQLVAVGVNCLA 504 (698)
Q Consensus 479 ~l~~~v~~~~~~~~~~~~~iGlNC~~ 504 (698)
.+..++.++.. +....-.-+|..|
T Consensus 198 A~AN~laA~~a--Ga~~vd~s~~GlG 221 (363)
T TIGR02090 198 ATANSIAGVKA--GAEQVHVTVNGIG 221 (363)
T ss_pred HHHHHHHHHHC--CCCEEEEEeeccc
No 313
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.72 E-value=5.3e+02 Score=28.31 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=52.9
Q ss_pred HHHHHhCCCCEEEecc-cCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-
Q psy13907 425 IEALIQGGIDLLAIET-LPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC- 502 (698)
Q Consensus 425 i~~L~~~GvDlll~ET-i~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC- 502 (698)
++...+.|+|.+-+-| ..+...++..+..+++. ++-+.+++. +. +..+....++.+......++..|.+-=
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~-G~~v~~~l~--~a----~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 166 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLAREL-GMDTVGFLM--MS----HMAPPEKLAEQAKLMESYGAQCVYVVDS 166 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHC-CCeEEEEEE--ec----cCCCHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 5666778999976654 33334455555556553 555554443 32 233444444433322224455544422
Q ss_pred ---CChhhhHHHHHHhc----CCCCEEEecC
Q psy13907 503 ---LAPHYVESLLTSAG----RDVPLLCCPN 526 (698)
Q Consensus 503 ---~~p~~~~~~l~~l~----~~~pl~~yPN 526 (698)
.-|+.+..+++.+. .+.++.++-.
T Consensus 167 ~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 197 (337)
T PRK08195 167 AGALLPEDVRDRVRALRAALKPDTQVGFHGH 197 (337)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 35888888888875 2677877643
No 314
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=40.69 E-value=1.6e+02 Score=31.17 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeE
Q psy13907 45 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKA 124 (698)
Q Consensus 45 ~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv 124 (698)
.+.+|..++ |+|.| ..|. .++++.-.+.+.+.|+|.+-+|-= .|+...++.+.+ .++||
T Consensus 75 ~~~~vv~Dm-PF~sy-------------~~s~---~~a~~nA~r~~ke~gA~aVKlEGG---~~~~~~i~~L~~-~gIPV 133 (268)
T COG0413 75 PNAFVVADL-PFGSY-------------EVSP---EQALKNAARLMKEAGADAVKLEGG---EEMAETIKRLTE-RGIPV 133 (268)
T ss_pred CCeeEEeCC-CCccc-------------CCCH---HHHHHHHHHHHHHhCCCEEEEcCC---HHHHHHHHHHHH-cCCce
Confidence 356777776 56542 1222 345555566666799999999975 455555666665 68999
Q ss_pred EEEEEEcCCC------ccCCCCCHHH---HHHHHHhhCCCCceEEEEcCCC
Q psy13907 125 WISFSCKDEK------HTCHGDKFGL---IARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 125 ~iSft~~~~g------~l~~G~~~~~---~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
+-.+-+.+.. .=.-|.+-++ .++..+..+..|+.++=+-|..
T Consensus 134 ~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp 184 (268)
T COG0413 134 MGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVLECVP 184 (268)
T ss_pred EEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEEeccH
Confidence 9877665443 2223444333 3332223345799999999985
No 315
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=40.61 E-value=1.5e+02 Score=31.70 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
+|++..++.|+|.|++.. .+.++++.+++.+++ .+..+.+..+ .|-+++.+.+... .++|.|-+-
T Consensus 199 eea~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~-~~~~~~leas--------GGI~~~ni~~ya~----~GvD~is~g 263 (277)
T TIGR01334 199 EQALTVLQASPDILQLDK-FTPQQLHHLHERLKF-FDHIPTLAAA--------GGINPENIADYIE----AGIDLFITS 263 (277)
T ss_pred HHHHHHHHcCcCEEEECC-CCHHHHHHHHHHHhc-cCCCEEEEEE--------CCCCHHHHHHHHh----cCCCEEEeC
Confidence 455666779999999998 467788989888874 2233444442 4777877776553 577776443
No 316
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=40.53 E-value=89 Score=35.33 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=30.6
Q ss_pred HHHHHHH-HHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC
Q psy13907 444 QEEAMVL-AELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 502 (698)
Q Consensus 444 ~~Eakaa-~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC 502 (698)
...++.+ .++.+++...-++|--||..+ .-|+.+...++.+ +. .+...|.+||
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~~---~IGdDi~~v~~~~-~~--~~~~vi~v~t 124 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIAE---IIGDDVGAVVSEF-QE--GGAPIVYLET 124 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcHH---HhhcCHHHHHHHh-hh--cCCCEEEEEC
Confidence 4455443 444555433445555555432 6788888888777 32 2445778888
No 317
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=40.45 E-value=3.5e+02 Score=27.44 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCEEEEec--CcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCcc------CCCCCHHHHHHHHHhhCCC
Q psy13907 84 RPRIEALIQGGIDLLAIET--LPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHT------CHGDKFGLIARDVYAKNPA 155 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ET--i~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l------~~G~~~~~~~~~l~~~~~~ 155 (698)
.++++.+.+.|+|.+++=| +.+.+ .+.++++++...++++|+.+..+... ..+.++.+.++.+.. .
T Consensus 84 ~ed~~~~~~~Ga~~vvlgs~~l~d~~---~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~---~ 157 (230)
T TIGR00007 84 LEDVEKLLDLGVDRVIIGTAAVENPD---LVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE---L 157 (230)
T ss_pred HHHHHHHHHcCCCEEEEChHHhhCHH---HHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh---C
Confidence 3566777778999887654 33443 34455555433568888887643111 123456666666542 4
Q ss_pred CceEEEE
Q psy13907 156 QLVAVGV 162 (698)
Q Consensus 156 ~~~aIGi 162 (698)
+++.+-+
T Consensus 158 g~~~ii~ 164 (230)
T TIGR00007 158 GLEGIIY 164 (230)
T ss_pred CCCEEEE
Confidence 5554443
No 318
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=40.11 E-value=7.1e+02 Score=29.61 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=58.1
Q ss_pred HHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHH---HHHHHHHHhCCCCceEEEE
Q psy13907 425 IEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG---LIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 425 i~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~---~~v~~~~~~~~~~~~~iGl 500 (698)
++...+.|+|.+ ++-..++..+++.+++++++. ++-+.++++...+.+ .++. +.++.+.+ .++..|.+
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~----~~~~~~~~~~~~~~~---~Gad~I~i 168 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKH-GAHAQGTISYTTSPV----HTLETYLDLAEELLE---MGVDSICI 168 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc-CCEEEEEEEeccCCC----CCHHHHHHHHHHHHH---cCCCEEEE
Confidence 444567899987 444678889999999999974 555554433222111 3444 44544433 44555544
Q ss_pred cC----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 501 NC----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 501 NC----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
-= ..|..+..+++.+. .+.||.+|-.
T Consensus 169 ~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~H 200 (582)
T TIGR01108 169 KDMAGILTPKAAYELVSALKKRFGLPVHLHSH 200 (582)
T ss_pred CCCCCCcCHHHHHHHHHHHHHhCCCceEEEec
Confidence 22 36899999999886 4577766543
No 319
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=39.71 E-value=3.4e+02 Score=32.08 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc----CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCC
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY----PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ 494 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~----~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~ 494 (698)
++--+|++.|.++|+|++=+ |+++..+|++.-.--+++ ...|++.-+-|+. .--..+++.
T Consensus 45 ~atv~Qi~~L~~aGceiVRv-tvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~-------~~A~~a~~~-------- 108 (606)
T PRK00694 45 DGTVRQICALQEWGCDIVRV-TVQGLKEAQACEHIKERLIQQGISIPLVADIHFFP-------QAAMHVADF-------- 108 (606)
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCCh-------HHHHHHHHh--------
Confidence 44568999999999999987 999999988765554442 4578887666532 101122232
Q ss_pred ceEEEEcC---CC----------------------hhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHH
Q psy13907 495 LVAVGVNC---LA----------------------PHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVD 548 (698)
Q Consensus 495 ~~~iGlNC---~~----------------------p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a 548 (698)
+..|=+|= .+ .+.+.++++... ..+|+=+=-|.|...+.....| ..+|+.|.
T Consensus 109 vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y--G~tpegmV 186 (606)
T PRK00694 109 VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY--GDTIEGMV 186 (606)
T ss_pred cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh--CCCHHHHH
Confidence 23344444 12 245566666655 6788777788884332111112 35788887
Q ss_pred HHHHHHH----HcC-CeEEeecCCCc-hHHHHHHHhccc
Q psy13907 549 TYVPRWL----DTG-VKYVGGCCRTN-ADDMKNVNQVPV 581 (698)
Q Consensus 549 ~~~~~~~----~~G-~~iiGGCCGTt-P~hI~al~~~v~ 581 (698)
+.+.+++ +.| =+|+=-+=.++ +.-|++-+...+
T Consensus 187 eSAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~ 225 (606)
T PRK00694 187 YSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAK 225 (606)
T ss_pred HHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHH
Confidence 7776665 345 45554454443 445555444443
No 320
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=39.62 E-value=92 Score=34.13 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=48.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q psy13907 10 LGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEA 89 (698)
Q Consensus 10 ~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~ 89 (698)
+|++-..+.||++++..-|+.. + ..+++|. |- ..+.|. +..+.+++.+.|++|++.
T Consensus 85 MGLDW~~a~ELIrRs~aeA~~~-g------------~~ia~Ga-GT--D~L~~~--------~~~sld~V~~AY~eQ~~~ 140 (382)
T PF06187_consen 85 MGLDWAAARELIRRSAAEARAV-G------------ARIACGA-GT--DQLDPA--------PAASLDDVIAAYEEQLEA 140 (382)
T ss_dssp TTB-HHHHHHHHHHHHHHHHTS-S--------------EEEEE-----TTS-----------TT--HHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhc-C------------CcEEeec-Cc--CCCCCC--------CCCCHHHHHHHHHHHHHH
Confidence 4666667888999888766533 1 2344443 31 233322 246889999999999999
Q ss_pred HHhCCCCEEEEecCcCHHHHHHH----------HHHHHhcCCCeEEEEEE
Q psy13907 90 LIQGGIDLLAIETLPAQEEAMVL----------AELIKEYPGLKAWISFS 129 (698)
Q Consensus 90 l~~~GVD~il~ETi~~l~Ea~aa----------~~a~~~~~~~Pv~iSft 129 (698)
..+.|...|+ |.|-.=++++ -+.+++ .+.||++..-
T Consensus 141 ve~~Gg~~IL---MASRaLA~~A~~p~DY~~VY~~lL~q-~~~PVILHWL 186 (382)
T PF06187_consen 141 VEAAGGRVIL---MASRALAAVARSPDDYLRVYDRLLSQ-ADEPVILHWL 186 (382)
T ss_dssp HHHTT--EEE------HHHHHH--SHHHHHHHHHHHHHH--SS-EEEEEE
T ss_pred HHHcCCeEEE---eehHHHHHhhCCHHHHHHHHHHHHHH-cCCCEEEEec
Confidence 9999999998 5554332222 112222 5679877653
No 321
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=39.55 E-value=6.2e+02 Score=28.77 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=59.9
Q ss_pred ccchhhcccChHHHHHHHHHHHHHhcchhhccc-ccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCC
Q psy13907 304 LWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNT-YQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS 382 (698)
Q Consensus 304 lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNT-f~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~ 382 (698)
-|-..-.-+--+.-++..++|++||-+.|--.+ ..+.... .-++. ..+.+++++|++-|-+.+.+.+ ..
T Consensus 93 ~Wq~~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d~----~~L~d---~~vA~Raa~L~~~aE~~~~~~~---~~ 162 (421)
T PRK15052 93 CWQQEPADAAMEKSVELVKAYVRAGFSKIHLDASMSCADDP----IPLAP---ETVAERAAVLCQAAESVATDCQ---RE 162 (421)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCCC----ccCCH---HHHHHHHHHHHHHHHHHHHhcC---CC
Confidence 465432222334567789999999999885443 3322211 12322 2466788888873322211111 23
Q ss_pred CCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy13907 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGID 434 (698)
Q Consensus 383 ~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvD 434 (698)
.++||.|.==|.+--.. .+-.+ ..-++.+.........-++|.+.|.+
T Consensus 163 ~~vYvIGTEvP~pGGa~--~~~~~--~~vT~~e~~~~ti~~h~~af~~~GL~ 210 (421)
T PRK15052 163 QLSYVIGTEVPVPGGEA--SAIQS--VHVTRVEDAANTLRTHQKAFIARGLT 210 (421)
T ss_pred CceEEeccccCCCCcch--hhccc--cCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 57899998665431000 00001 11234555555555555777777753
No 322
>PRK09358 adenosine deaminase; Provisional
Probab=39.51 E-value=5.2e+02 Score=27.91 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHH-----------HHHHHHHHHHhc---CCCeEEEEEEecCCCccCCC
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIETLPAQE-----------EAMVLAELIKEY---PGLKAWISFSCKDEKHTCHG 477 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~-----------Eakaa~~a~~~~---~~~Pv~iS~t~~~~g~l~~G 477 (698)
.|.++++..-+.-++-+++.|| ..+|+.++.. .+++++.++++. .++-+.+..++.+. .+-
T Consensus 74 ~t~ed~~~~~~~~~~e~~~~Gv--ty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~r~---~~~ 148 (340)
T PRK09358 74 QTEEDLRRLAFEYLEDAAADGV--VYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFMRH---FGE 148 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--EEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEecCC---CCH
Confidence 5778888888898888888998 5777776653 233444454431 24555555554331 111
Q ss_pred CcHHHHHHHHHHh-CCCCceEEEEcCC----ChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHH
Q psy13907 478 DKFGLIARDVYAK-NPAQLVAVGVNCL----APHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYV 551 (698)
Q Consensus 478 ~~l~~~v~~~~~~-~~~~~~~iGlNC~----~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~ 551 (698)
....+.++.+... ....+.++|+.+. .++.+.++++... ...++.++- |+.. .+....
T Consensus 149 ~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~--~E~~-----------~~~~~~--- 212 (340)
T PRK09358 149 EAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHA--GEAG-----------GPESIW--- 212 (340)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcC--CCCC-----------chhHHH---
Confidence 1122333333221 1234566677652 2345555555554 556655544 3211 112222
Q ss_pred HHHHH-cCCeEEeecCCCc--hHHHHHHHhc
Q psy13907 552 PRWLD-TGVKYVGGCCRTN--ADDMKNVNQV 579 (698)
Q Consensus 552 ~~~~~-~G~~iiGGCCGTt--P~hI~al~~~ 579 (698)
+.++ .|+.-+|-|+..+ |+.|+.|++.
T Consensus 213 -~al~~lg~~ri~Hg~~l~~~~~~~~~l~~~ 242 (340)
T PRK09358 213 -EALDELGAERIGHGVRAIEDPALMARLADR 242 (340)
T ss_pred -HHHHHcCCcccchhhhhccCHHHHHHHHHc
Confidence 2233 5888889888874 7778888864
No 323
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=39.41 E-value=3.7e+02 Score=28.50 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhCCCCEEE----------------------ecccCCHHHHHHHHHHHH-hcCCCeEEEEEEecCCCccC
Q psy13907 419 DYHRPRIEALIQGGIDLLA----------------------IETLPAQEEAMVLAELIK-EYPGLKAWISFSCKDEKHTC 475 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll----------------------~ETi~~~~Eakaa~~a~~-~~~~~Pv~iS~t~~~~g~l~ 475 (698)
+...+.++.|.++|||+|= ++--.++..+-..+..++ +..+.|+++-.-.+. -..
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~--i~~ 101 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNP--IFQ 101 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHH--HHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccH--Hhc
Confidence 4566778889999999972 233344444455566666 567799886655432 011
Q ss_pred CCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc-CCC--CEEEecCCCCC-------------c----CCCC
Q psy13907 476 HGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG-RDV--PLLCCPNSGET-------------F----DPGQ 535 (698)
Q Consensus 476 ~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~-~~~--pl~~yPNaG~~-------------~----d~~~ 535 (698)
-| ++..++.+.+ .+++++-+==+.+++...+.+.+. ..+ -..+.||.... | ...+
T Consensus 102 ~G--~e~F~~~~~~---aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvT 176 (259)
T PF00290_consen 102 YG--IERFFKEAKE---AGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVT 176 (259)
T ss_dssp H---HHHHHHHHHH---HTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSS
T ss_pred cc--hHHHHHHHHH---cCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCC
Confidence 12 2233333332 345555554466666666555443 222 23456665310 0 0112
Q ss_pred cccccCCChhhHHHHHHHHHHcC-CeEEeecCCCchHHHHHHHhcccc
Q psy13907 536 RIWMNKDSVPSVDTYVPRWLDTG-VKYVGGCCRTNADDMKNVNQVPVK 582 (698)
Q Consensus 536 g~~~~~~~p~~~a~~~~~~~~~G-~~iiGGCCGTtP~hI~al~~~v~~ 582 (698)
|.- ..-+..+.+++++..+.. .-++-|=-=.+|+|++++..-.++
T Consensus 177 G~~--~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aDG 222 (259)
T PF00290_consen 177 GSR--TELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLAAGADG 222 (259)
T ss_dssp STT--SSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHHTTSSE
T ss_pred CCc--ccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHHccCCE
Confidence 200 122456677777776654 788888777899999998855443
No 324
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=39.06 E-value=86 Score=32.51 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCc---CHHHHHHHHHHHHhcCCCeEEEE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLP---AQEEAMVLAELIKEYPGLKAWIS 127 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~---~l~Ea~aa~~a~~~~~~~Pv~iS 127 (698)
..|.+++...+++|.|+++ |... +.++.+.+++++++ .+.++++.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~-~g~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARS-SGRKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHh-cCCEEEEC
Confidence 5788898888889999888 6543 67788888888888 67888765
No 325
>KOG2550|consensus
Probab=38.92 E-value=5.5e+02 Score=29.19 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=16.6
Q ss_pred HHHHhcchhhcccccCChhch
Q psy13907 324 YVRAGCDIVTTNTYQASVEGF 344 (698)
Q Consensus 324 yl~AGAdII~TNTf~as~~~l 344 (698)
-.+||.|+|.-.+-|.|..-+
T Consensus 259 l~~aGvdvviLDSSqGnS~~q 279 (503)
T KOG2550|consen 259 LVQAGVDVVILDSSQGNSIYQ 279 (503)
T ss_pred hhhcCCcEEEEecCCCcchhH
Confidence 468999999998888876533
No 326
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=38.90 E-value=5.5e+02 Score=27.97 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCEEEecccC-CHHHHH
Q psy13907 423 PRIEALIQGGIDLLAIETLP-AQEEAM 448 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~-~~~Eak 448 (698)
..+..+.+.|+|.+-+.... |+.+++
T Consensus 225 ~~l~~~~e~g~dvl~~d~~~~dl~eak 251 (321)
T cd03309 225 SLVPSMAEMGVDSWNVVMTANNTAELR 251 (321)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHH
Confidence 34666777899999887654 776654
No 327
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=38.79 E-value=4.8e+02 Score=28.22 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCC------ccCCCCCHHHHHHHH
Q psy13907 95 IDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEK------HTCHGDKFGLIARDV 149 (698)
Q Consensus 95 VD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g------~l~~G~~~~~~~~~l 149 (698)
+.-+.+||-|+...-..+. .+++ .+..+.|++-++... .+.-|.+.+++.+++
T Consensus 103 ~~~i~~esrpd~i~~e~L~-~l~~-aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai 161 (313)
T TIGR01210 103 LKEVVVESRPEFIDEEKLE-ELRK-IGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAA 161 (313)
T ss_pred cceEEEEeCCCcCCHHHHH-HHHH-cCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHH
Confidence 4557777777543333332 2454 355555666665421 133466666555544
No 328
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=38.76 E-value=5.9e+02 Score=28.32 Aligned_cols=141 Identities=19% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCC
Q psy13907 322 RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDG 401 (698)
Q Consensus 322 ~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~ 401 (698)
+.-+++|++.|... +..|...+...++++.+++.+....+++.|++. +..+.+. ..+.
T Consensus 82 ~~a~~~g~~~i~i~-~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~------------G~~v~~~---------~ed~ 139 (378)
T PRK11858 82 DASIDCGVDAVHIF-IATSDIHIKHKLKKTREEVLERMVEAVEYAKDH------------GLYVSFS---------AEDA 139 (378)
T ss_pred HHHHhCCcCEEEEE-EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC------------CCeEEEE---------eccC
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCC
Q psy13907 402 SEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGD 478 (698)
Q Consensus 402 ~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E---Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~ 478 (698)
...+. +++.+.++.+.+.|+|.|.+= -.....+....+..+++.. ++.++|-+.+ -.|.
T Consensus 140 ~r~~~------------~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hn----d~Gl 201 (378)
T PRK11858 140 SRTDL------------DFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV--DIPIEVHCHN----DFGM 201 (378)
T ss_pred CCCCH------------HHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCeEEEEecC----CcCH
Q ss_pred cHHHHHHHHHHhCCCCceEEEEcCCC
Q psy13907 479 KFGLIARDVYAKNPAQLVAVGVNCLA 504 (698)
Q Consensus 479 ~l~~~v~~~~~~~~~~~~~iGlNC~~ 504 (698)
.+..++.++.. +....-.-+|-.|
T Consensus 202 A~AN~laAv~a--Ga~~vd~tv~GlG 225 (378)
T PRK11858 202 ATANALAGIEA--GAKQVHTTVNGLG 225 (378)
T ss_pred HHHHHHHHHHc--CCCEEEEeecccc
No 329
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=38.71 E-value=1.8e+02 Score=32.88 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCCEE-----EE-ecCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh
Q psy13907 82 YHRPRIEALIQGGIDLL-----AI-ETLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 151 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~i-----l~-ETi~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~ 151 (698)
.|.+++..+..+|+|+| +. ..+.-++| ++++.+++++. ++.+.+-++.+. |. ..++.+..+.
T Consensus 148 ~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT-------~~-~~em~~ra~~ 219 (412)
T cd08213 148 EHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANIT-------AP-VREMERRAEL 219 (412)
T ss_pred HHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEec-------CC-HHHHHHHHHH
Confidence 34445555667899985 22 33444444 55556665532 677777777664 22 5566665432
Q ss_pred hCCCCceEEEEcCCC
Q psy13907 152 KNPAQLVAVGVNCLA 166 (698)
Q Consensus 152 ~~~~~~~aIGiNC~~ 166 (698)
....+..++.+|...
T Consensus 220 a~e~G~~~~mv~~~~ 234 (412)
T cd08213 220 VADLGGKYVMIDVVV 234 (412)
T ss_pred HHHhCCCeEEeeccc
Confidence 234677888888854
No 330
>PRK00915 2-isopropylmalate synthase; Validated
Probab=38.61 E-value=6.1e+02 Score=29.55 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCC
Q psy13907 314 RQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGS 393 (698)
Q Consensus 314 Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP 393 (698)
++-|+..-+.-.++|.+.|.+.. ..|.......++.+.+++.+....+++.||+.- . .|. +++
T Consensus 78 ~~did~a~~a~~~~~~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g------------~--~v~--f~~ 140 (513)
T PRK00915 78 KKDIDAAAEALKPAEAPRIHTFI-ATSPIHMEYKLKMSREEVLEMAVEAVKYARSYT------------D--DVE--FSA 140 (513)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEE-CCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC------------C--eEE--EEe
Confidence 44455555555566766554432 344554444457777776666666666665532 1 232 223
Q ss_pred cCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe-ccc--CCHHHHHHHHHHHHhcCC--CeEEEEEEe
Q psy13907 394 YGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAI-ETL--PAQEEAMVLAELIKEYPG--LKAWISFSC 468 (698)
Q Consensus 394 ~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~-ETi--~~~~Eakaa~~a~~~~~~--~Pv~iS~t~ 468 (698)
- +.+ -.+. +++.+.++.+.+.|+|.|-+ -|+ ....+....+..+++... ..+.+++-+
T Consensus 141 e---------d~~----r~d~----~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~ 203 (513)
T PRK00915 141 E---------DAT----RTDL----DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHC 203 (513)
T ss_pred C---------CCC----CCCH----HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEe
Confidence 1 111 1233 55666677778899998754 343 456777778888875321 116678887
Q ss_pred cC
Q psy13907 469 KD 470 (698)
Q Consensus 469 ~~ 470 (698)
.+
T Consensus 204 HN 205 (513)
T PRK00915 204 HN 205 (513)
T ss_pred cC
Confidence 66
No 331
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.58 E-value=4.9e+02 Score=27.29 Aligned_cols=127 Identities=23% Similarity=0.178 Sum_probs=74.7
Q ss_pred HHHHh----cchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCC
Q psy13907 324 YVRAG----CDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLH 399 (698)
Q Consensus 324 yl~AG----AdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~ 399 (698)
.+++| .|+|.... .+|...+...++++.++..+.....++.|++. +. .|. +++.
T Consensus 78 a~~~~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~------------G~--~v~--~~~~----- 135 (268)
T cd07940 78 AAEALKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH------------GL--DVE--FSAE----- 135 (268)
T ss_pred HHHhCCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------CC--eEE--Eeee-----
Confidence 35666 88877654 46666665556776655444444444444432 11 222 3331
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec-cc--CCHHHHHHHHHHHHhcCC-CeEEEEEEecCCCccC
Q psy13907 400 DGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEYPG-LKAWISFSCKDEKHTC 475 (698)
Q Consensus 400 ~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E-Ti--~~~~Eakaa~~a~~~~~~-~Pv~iS~t~~~~g~l~ 475 (698)
|.+ ..+. +++.+.++.+.+.|+|.|.+- |+ -...+....+..+++... ..+.++|-+.+ .
T Consensus 136 ----~~~----~~~~----~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn----~ 199 (268)
T cd07940 136 ----DAT----RTDL----DFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHN----D 199 (268)
T ss_pred ----cCC----CCCH----HHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC----C
Confidence 111 1333 455666777788999988664 43 356677778888886322 12667888877 5
Q ss_pred CCCcHHHHHHHHH
Q psy13907 476 HGDKFGLIARDVY 488 (698)
Q Consensus 476 ~G~~l~~~v~~~~ 488 (698)
.|..+..++.++.
T Consensus 200 ~GlA~An~laAi~ 212 (268)
T cd07940 200 LGLAVANSLAAVE 212 (268)
T ss_pred cchHHHHHHHHHH
Confidence 6777777777774
No 332
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=38.49 E-value=4.6e+02 Score=28.91 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEecCc---CHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCC
Q psy13907 79 LIDYHRPRIEALIQGGIDLLAIETLP---AQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNP 154 (698)
Q Consensus 79 l~~~~~~qi~~l~~~GVD~il~ETi~---~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~ 154 (698)
..+.-...+++-.+.|+.+-+=.- + .-.|.+...+.+|+. ++.|+++++-+... .|.+.+++.+.+... .
T Consensus 75 ~~~in~~La~~a~~~G~~~~~Gs~-~~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~----~~~~~~~~~~~~~~~-~ 148 (352)
T PRK05437 75 AKEINRKLAEAAEELGIAMGVGSQ-RAALKDPELADSFSVVRKVAPDGLLFANLGAVQL----YGYGVEEAQRAVEMI-E 148 (352)
T ss_pred HHHHHHHHHHHHHHcCCCeEeccc-HhhccChhhHHHHHHHHHHCCCceEEeecCcccc----CCCCHHHHHHHHHhc-C
Confidence 344556666766778877655332 2 112366677777775 48999999977543 266666666555322 2
Q ss_pred CCceEEEEcCCC
Q psy13907 155 AQLVAVGVNCLA 166 (698)
Q Consensus 155 ~~~~aIGiNC~~ 166 (698)
..+..|++||.+
T Consensus 149 adal~l~l~~~q 160 (352)
T PRK05437 149 ADALQIHLNPLQ 160 (352)
T ss_pred CCcEEEeCccch
Confidence 456667777754
No 333
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.30 E-value=1e+02 Score=33.14 Aligned_cols=31 Identities=10% Similarity=0.302 Sum_probs=25.3
Q ss_pred HHHHHhCCCCEEEecccCCHHHHHHHHHHHHh
Q psy13907 425 IEALIQGGIDLLAIETLPAQEEAMVLAELIKE 456 (698)
Q Consensus 425 i~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~ 456 (698)
+...+++|+|+|++..|+ +.+++.++..+++
T Consensus 212 a~eal~~gaDiI~LDnm~-~e~vk~av~~~~~ 242 (289)
T PRK07896 212 LDEVLAEGAELVLLDNFP-VWQTQEAVQRRDA 242 (289)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhc
Confidence 333467899999999877 9999999997764
No 334
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=38.27 E-value=6.5e+02 Score=30.94 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe------cCcC----H-HHHHHHHHHHHhc-C----CCeEEEEEEEcCCCccCCC
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE------TLPA----Q-EEAMVLAELIKEY-P----GLKAWISFSCKDEKHTCHG 139 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E------Ti~~----l-~Ea~aa~~a~~~~-~----~~Pv~iSft~~~~g~l~~G 139 (698)
..++...+++-++.|.++|++.|=+. .++. . ..+..++++++.. . +..+...+.+.+
T Consensus 576 ~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~------- 648 (758)
T PRK05222 576 ARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKDETQIHTHMCYSE------- 648 (758)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeccC-------
Confidence 45688889999999999999887553 3331 1 1234555666542 2 345666665532
Q ss_pred CCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhccc----ccccccccccCCChHHHHHHHHHHHHcCCCCC
Q psy13907 140 DKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQS----LELPVNNTLISRKPIQLLSIELELAAAGKMPS 215 (698)
Q Consensus 140 ~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~----~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~ 215 (698)
+.+++..+. ...+|++.+-.+... ...|+.+++...+ +++=+.-...-+.|+++...+++..+.
T Consensus 649 --~~~i~~~i~---~l~vD~~~lE~~rs~--~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~----- 716 (758)
T PRK05222 649 --FNDIIDAIA---ALDADVISIETSRSD--MELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEV----- 716 (758)
T ss_pred --hHHHHHHHH---hCCCCEEEEEecCCC--chhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHh-----
Confidence 445666663 368999999976533 3466666553211 122223334467899999999998875
Q ss_pred CCcCCCcCccEEeecCCCCce
Q psy13907 216 GTTQIPFEAPLKAKPNRSLFE 236 (698)
Q Consensus 216 ~~~~~~~~~~~~~~pnag~p~ 236 (698)
+|. .-|++-|+-|+=.
T Consensus 717 ----v~~-e~l~v~PdCGl~t 732 (758)
T PRK05222 717 ----IPA-ERLWVNPDCGLKT 732 (758)
T ss_pred ----CCh-heEEEeCCCCCcC
Confidence 232 3499999999744
No 335
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=38.21 E-value=1.1e+02 Score=31.02 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCEEEEecC----cCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCce
Q psy13907 83 HRPRIEALIQGGIDLLAIETL----PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 158 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il~ETi----~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~ 158 (698)
+.+|++.+.++|+|++++-.- |+-.+.+..++.+++..++|+++.. .+.+++.... ..+++
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v-----------~t~~ea~~a~----~~G~d 145 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI-----------STLEEALNAA----KLGFD 145 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC-----------CCHHHHHHHH----HcCCC
Confidence 445889999999998887421 2223566677777764347777643 2455554433 26889
Q ss_pred EEEEc
Q psy13907 159 AVGVN 163 (698)
Q Consensus 159 aIGiN 163 (698)
.|++|
T Consensus 146 ~i~~~ 150 (219)
T cd04729 146 IIGTT 150 (219)
T ss_pred EEEcc
Confidence 88774
No 336
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=38.20 E-value=1.1e+02 Score=32.38 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
+|+....+.|+|.|.+..|+- ++++.+++.++. .+|+.++ .|-+.+.+.+.+. .|+|+|.+
T Consensus 189 eea~~A~~~gaDyI~ld~~~~-e~lk~~v~~~~~--~ipi~As----------GGI~~~ni~~~a~----~Gvd~Isv 249 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDNMKP-EEIKEAVQLLKG--RVLLEAS----------GGITLDNLEEYAE----TGVDVISS 249 (265)
T ss_pred HHHHHHHHcCCCEEEECCCCH-HHHHHHHHHhcC--CCcEEEE----------CCCCHHHHHHHHH----cCCCEEEe
Confidence 445555678999999999754 778888776643 3676654 3667777766543 67888888
No 337
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.02 E-value=6e+02 Score=28.20 Aligned_cols=52 Identities=29% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEeccc------CCHHHHHHHHHHHHhcCCCeEEEEEEe
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIETL------PAQEEAMVLAELIKEYPGLKAWISFSC 468 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ETi------~~~~Eakaa~~a~~~~~~~Pv~iS~t~ 468 (698)
.+.+|. ...++.|.+.|+|+|-+=+- ...... -....+++..+.||+++..+
T Consensus 232 ~~~~e~----~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~-~~~~~~k~~~~~pv~~~G~i 289 (361)
T cd04747 232 DTPDEL----EALLAPLVDAGVDIFHCSTRRFWEPEFEGSEL-NLAGWTKKLTGLPTITVGSV 289 (361)
T ss_pred CCHHHH----HHHHHHHHHcCCCEEEecCCCccCCCcCccch-hHHHHHHHHcCCCEEEECCc
Confidence 566655 34455577889999855221 100011 12233455456788877655
No 338
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.81 E-value=88 Score=35.35 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=22.9
Q ss_pred CeEEeecCCCchHHHHHHHhccccCCCCC
Q psy13907 559 VKYVGGCCRTNADDMKNVNQVPVKFSITP 587 (698)
Q Consensus 559 ~~iiGGCCGTtP~hI~al~~~v~~~~~~~ 587 (698)
+||+|||. .+|.+++.|++.++...-+.
T Consensus 160 VNiig~~~-~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 160 VNLLPGAH-LTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred EEEECCCC-CCHHHHHHHHHHHHHcCCce
Confidence 99999994 46999999999998765543
No 339
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=37.77 E-value=2.8e+02 Score=28.11 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 81 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
+.|.+.++.+++.|+|++=+|--..-+..+. ....+. .+.++++|..-- ..+.+-..+.+.++.+. ..++|.+
T Consensus 75 ~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~-~~~~iI~S~H~f--~~tp~~~~l~~~~~~~~---~~gadiv 147 (224)
T PF01487_consen 75 EEYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARK-GGTKIILSYHDF--EKTPSWEELIELLEEMQ---ELGADIV 147 (224)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHH-TTSEEEEEEEES--S---THHHHHHHHHHHH---HTT-SEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhh-CCCeEEEEeccC--CCCCCHHHHHHHHHHHH---hcCCCeE
Confidence 4566667777777899999996533333322 334444 578999999822 22333333555555554 3677777
Q ss_pred EEcCC
Q psy13907 161 GVNCL 165 (698)
Q Consensus 161 GiNC~ 165 (698)
=+-|.
T Consensus 148 Kia~~ 152 (224)
T PF01487_consen 148 KIAVM 152 (224)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66664
No 340
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.67 E-value=5.3e+02 Score=27.47 Aligned_cols=110 Identities=18% Similarity=0.284 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHHhcchhhcc-cccCChhchHhhcCCCH--HHHHHHH-----HHHHHHHHHHHHHhhccCCccCCCC
Q psy13907 313 NRQAVIDTHRDYVRAGCDIVTTN-TYQASVEGFVQHLGLSE--DQSVQLI-----RDAVKYVKEAIALEEKRDPAIASRH 384 (698)
Q Consensus 313 ~Pe~V~~iH~~yl~AGAdII~TN-Tf~as~~~l~~~~g~~~--~~~~eln-----~~av~lAr~A~~~~~~~~~~~~~~~ 384 (698)
++|.-.++-+.-.++|||+|+-- -|+ .+ ++| |-.. ...+.|+ ....++.+++++.. ...|
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfS-DP--vAD--GP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~-------~~~P 96 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFS-DP--VAD--GPTIQAAHLRALAAGVTLEDTLELVEEIRAKG-------VKVP 96 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCC-Cc--Ccc--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-------CCCC
Confidence 55777888889999999999743 231 11 221 2111 1112233 45566777777653 1223
Q ss_pred cEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc
Q psy13907 385 VRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY 457 (698)
Q Consensus 385 ~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~ 457 (698)
+.+-+-.-| .+..| + +.| ++.+.+.|||-+++=-+| .+|......+++++
T Consensus 97 ivlm~Y~Np---i~~~G---------------i-e~F---~~~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~ 146 (265)
T COG0159 97 IVLMTYYNP---IFNYG---------------I-EKF---LRRAKEAGVDGLLVPDLP-PEESDELLKAAEKH 146 (265)
T ss_pred EEEEEeccH---HHHhh---------------H-HHH---HHHHHHcCCCEEEeCCCC-hHHHHHHHHHHHHc
Confidence 433332222 11111 1 112 223567888888876666 44555666666653
No 341
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=37.65 E-value=2.9e+02 Score=28.21 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCC-ceEEEEc
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ-LVAVGVN 501 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~-~~~iGlN 501 (698)
+|++...++|+|+++== .+ -..++++++++ ++|++ +.-.|.+++..++.. +.. +..+=.+
T Consensus 71 ~~a~~a~~aGA~FivsP---~~--~~~v~~~~~~~-~i~~i-----------PG~~TptEi~~A~~~--Ga~~vKlFPA~ 131 (204)
T TIGR01182 71 EQLRQAVDAGAQFIVSP---GL--TPELAKHAQDH-GIPII-----------PGVATPSEIMLALEL--GITALKLFPAE 131 (204)
T ss_pred HHHHHHHHcCCCEEECC---CC--CHHHHHHHHHc-CCcEE-----------CCCCCHHHHHHHHHC--CCCEEEECCch
Confidence 67888889999999643 33 23556666663 78875 344677888887731 211 1111123
Q ss_pred CC-ChhhhHHHHHHhcCCCC-EEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCch
Q psy13907 502 CL-APHYVESLLTSAGRDVP-LLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNA 570 (698)
Q Consensus 502 C~-~p~~~~~~l~~l~~~~p-l~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP 570 (698)
.. ||.+ ++.|+...| +-+.|-.|- ++ +-+.+|++.|+..+|+--.-.+
T Consensus 132 ~~GG~~y----ikal~~plp~i~~~ptGGV-------------~~----~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 132 VSGGVKM----LKALAGPFPQVRFCPTGGI-------------NL----ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred hcCCHHH----HHHHhccCCCCcEEecCCC-------------CH----HHHHHHHhCCCEEEEEChhhcC
Confidence 32 2544 444442222 222243332 22 3457899999888776554443
No 342
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.57 E-value=3.1e+02 Score=29.44 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.1
Q ss_pred CCCCH---HHHHHHHHHHHHHHHhCCCCEEEe
Q psy13907 410 DSTTP---QELIDYHRPRIEALIQGGIDLLAI 438 (698)
Q Consensus 410 ~~~t~---del~~~y~~qi~~L~~~GvDlll~ 438 (698)
+.+|. +++.+.|.+.++.+.++|.|.+=+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgvei 160 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEI 160 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45655 556778888888889999998754
No 343
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=37.53 E-value=5.3e+02 Score=29.26 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=72.7
Q ss_pred ccchhhcccChHHHHHHHHHHHHHhcchhhccc-ccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCccC
Q psy13907 304 LWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNT-YQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKR-DPAIA 381 (698)
Q Consensus 304 lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNT-f~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~-~~~~~ 381 (698)
-|-.+-.-+--+.-++..++|++||-+.|--.+ ..+.... .-++. ..+.+++++|++-|-+.+.+. + .
T Consensus 92 ~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d~----~~L~d---~~vAeRaa~L~~~aE~~~~~~~~---~ 161 (420)
T TIGR02810 92 PWQHLPADEAMAKAAALVDAYVEAGFTKIHLDASMGCAGDP----APLDD---ATVAERAARLCAVAEAAATDRRG---E 161 (420)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCCC----ccCCH---HHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 476333333334567889999999999885443 3322111 12322 246678888887332221111 1 1
Q ss_pred CCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCE-------EEec----------ccCCH
Q psy13907 382 SRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDL-------LAIE----------TLPAQ 444 (698)
Q Consensus 382 ~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDl-------ll~E----------Ti~~~ 444 (698)
..++||.|.==|..--... +-.+ ..-.+.+.........=++|.+.|.+. +++- .-++.
T Consensus 162 ~~~vYvIGTEvP~pGGa~~--~~~~--~~vTs~e~~~~ti~~h~~af~~~GL~~aw~rvi~~VVQpGvef~~~~V~~y~~ 237 (420)
T TIGR02810 162 TKPVYVIGTEVPVPGGALE--ALQT--LAVTTPEAARATLRAHRKAFAARGLEDAWPRVIALVVQPGVEFDHHNVIHYQP 237 (420)
T ss_pred CCCeEEeccccCCCCchhh--hccc--cCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEecCCeeECCCceeecCH
Confidence 2478999986654210000 0000 112455666555555556777777533 1111 12466
Q ss_pred HHHHHHHHHHHhc
Q psy13907 445 EEAMVLAELIKEY 457 (698)
Q Consensus 445 ~Eakaa~~a~~~~ 457 (698)
..++.....++++
T Consensus 238 ~~A~~Ls~~~~~~ 250 (420)
T TIGR02810 238 ERAQALSQVIDNT 250 (420)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777765
No 344
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=37.46 E-value=1.2e+02 Score=32.88 Aligned_cols=64 Identities=5% Similarity=0.087 Sum_probs=43.5
Q ss_pred HHHHHHHh------CCCCEEEEecC--------cCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 85 PRIEALIQ------GGIDLLAIETL--------PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 85 ~qi~~l~~------~GVD~il~ETi--------~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
+|+...++ .|+|+|++..| .+.++++.+++.++. ..| +.. ..|-+++.+.+...
T Consensus 214 eea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~--~~~--lEa--------SGGIt~~ni~~yA~ 281 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING--RFE--TEA--------SGNVTLDTVHKIGQ 281 (308)
T ss_pred HHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC--Cce--EEE--------ECCCCHHHHHHHHH
Confidence 35555567 89999999999 378888888887653 233 222 13677777776553
Q ss_pred hhCCCCceEEEEcC
Q psy13907 151 AKNPAQLVAVGVNC 164 (698)
Q Consensus 151 ~~~~~~~~aIGiNC 164 (698)
.++|.|-+-.
T Consensus 282 ----tGVD~Is~Ga 291 (308)
T PLN02716 282 ----TGVTYISSGA 291 (308)
T ss_pred ----cCCCEEEeCc
Confidence 5788776654
No 345
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=37.38 E-value=4.5e+02 Score=33.88 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCC--CccCCCCCHHHHHHHHHhhC
Q psy13907 77 QELIDYHRPRIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDE--KHTCHGDKFGLIARDVYAKN 153 (698)
Q Consensus 77 eel~~~~~~qi~~l~~~GVD~i-l~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~--g~l~~G~~~~~~~~~l~~~~ 153 (698)
+++.+.|-++ ..+.|+|+| +|..+.++..++.+++++++ .++-+-.++++..+ .-.+.-.+++-.++.++...
T Consensus 624 d~vv~~f~~~---~~~~GidifrifD~lN~~~n~~~~~~~~~~-~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~ 699 (1143)
T TIGR01235 624 DNVVKYFVKQ---AAQGGIDIFRVFDSLNWVENMRVGMDAVAE-AGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELE 699 (1143)
T ss_pred HHHHHHHHHH---HHHcCCCEEEECccCcCHHHHHHHHHHHHH-cCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHH
Confidence 4444444333 457899997 67899999999999999998 57666555555321 00112234543333222212
Q ss_pred CCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 154 PAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 154 ~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
..|++.|.|-=+. .-+ -|..+..+++.|++.
T Consensus 700 ~~Gad~I~ikDt~---------------Gll-----------~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 700 KAGAHILGIKDMA---------------GLL-----------KPAAAKLLIKALREK 730 (1143)
T ss_pred HcCCCEEEECCCc---------------CCc-----------CHHHHHHHHHHHHHh
Confidence 3577766554332 112 799999999999875
No 346
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=37.27 E-value=2.8e+02 Score=32.70 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc----CCCeEEEEEEEc
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY----PGLKAWISFSCK 131 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~----~~~Pv~iSft~~ 131 (698)
.--+|+..|.++|+|++=+ |+|+.++++++-..-+.+ ..+|++.-+.|+
T Consensus 46 atv~Qi~~L~~aGceiVRv-tvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 98 (606)
T PRK00694 46 GTVRQICALQEWGCDIVRV-TVQGLKEAQACEHIKERLIQQGISIPLVADIHFF 98 (606)
T ss_pred HHHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCC
Confidence 4456899999999999985 899999988765554442 468999877664
No 347
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.20 E-value=5.9e+02 Score=27.88 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=53.4
Q ss_pred HHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-
Q psy13907 425 IEALIQGGIDLLAIETL-PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC- 502 (698)
Q Consensus 425 i~~L~~~GvDlll~ETi-~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC- 502 (698)
++...+.|+|.+-+=|- .+...++..++.+++. +.-+++++. +. +..+.+..++.+......++..|.+-=
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~-G~~v~~~l~--~s----~~~~~e~l~~~a~~~~~~Ga~~i~i~DT 165 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMAREL-GMDTVGFLM--MS----HMTPPEKLAEQAKLMESYGADCVYIVDS 165 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHc-CCeEEEEEE--cc----cCCCHHHHHHHHHHHHhcCCCEEEEccC
Confidence 56667789999866543 3344555566666653 555554443 31 234444444443322224445544422
Q ss_pred ---CChhhhHHHHHHhc----CCCCEEEecC
Q psy13907 503 ---LAPHYVESLLTSAG----RDVPLLCCPN 526 (698)
Q Consensus 503 ---~~p~~~~~~l~~l~----~~~pl~~yPN 526 (698)
..|+.+...++.+. .+.|++++..
T Consensus 166 ~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 196 (333)
T TIGR03217 166 AGAMLPDDVRDRVRALKAVLKPETQVGFHAH 196 (333)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 35888888888875 2478887654
No 348
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=37.09 E-value=2.3e+02 Score=31.09 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=22.1
Q ss_pred CCCCH---HHHHHHHHHHHHHHHhCCCCEEEe
Q psy13907 410 DSTTP---QELIDYHRPRIEALIQGGIDLLAI 438 (698)
Q Consensus 410 ~~~t~---del~~~y~~qi~~L~~~GvDlll~ 438 (698)
+.+|. +++.+.|.+.++.+.++|.|.+=+
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEI 156 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 44555 556778888888889999999855
No 349
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.82 E-value=5.3e+02 Score=27.24 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=55.2
Q ss_pred HHHHHHhCCCCEEEEe-cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 86 RIEALIQGGIDLLAIE-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 86 qi~~l~~~GVD~il~E-Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
-++...+.|+|.+-+- ..++++.++.+++.+|+ .++.+.+.+.+...+ ..+.+...+.+......+++.|.+-=
T Consensus 96 di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~-~G~~v~~~i~~~~~~----~~~~~~~~~~~~~~~~~Ga~~i~l~D 170 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKK-AGKHVEGAICYTGSP----VHTLEYYVKLAKELEDMGADSICIKD 170 (275)
T ss_pred HHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHH-CCCeEEEEEEecCCC----CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3445567899986554 34578888888888887 466665555443332 23344333332221235666554432
Q ss_pred CChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 165 LAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 165 ~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
+. |.. -|.++.++++.+++.
T Consensus 171 T~------------------------G~~--~P~~v~~lv~~l~~~ 190 (275)
T cd07937 171 MA------------------------GLL--TPYAAYELVKALKKE 190 (275)
T ss_pred CC------------------------CCC--CHHHHHHHHHHHHHh
Confidence 22 111 599999999999875
No 350
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=36.55 E-value=2.1e+02 Score=32.49 Aligned_cols=76 Identities=18% Similarity=0.115 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCEEE-----E-ecCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 83 HRPRIEALIQGGIDLLA-----I-ETLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il-----~-ETi~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
|.+++..+..+|+|+|= . -.+.-++| ++++.+++++. ++.+.+-++.+..+ ..++.+..+..
T Consensus 162 ~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~--------~~em~~ra~~~ 233 (412)
T TIGR03326 162 HAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITAP--------VREMERRAELV 233 (412)
T ss_pred HHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecCC--------HHHHHHHHHHH
Confidence 44455566779999863 1 23444444 55666666532 67777777776422 45555544322
Q ss_pred CCCCceEEEEcCCC
Q psy13907 153 NPAQLVAVGVNCLA 166 (698)
Q Consensus 153 ~~~~~~aIGiNC~~ 166 (698)
...++.++.+|...
T Consensus 234 ~~~G~~~~mv~~~~ 247 (412)
T TIGR03326 234 ADLGGQYVMVDVVV 247 (412)
T ss_pred HHhCCCeEEEEeec
Confidence 33677888888854
No 351
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=36.48 E-value=3.5e+02 Score=28.91 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHHhcchhhcccccCCh
Q psy13907 313 NRQAVIDTHRDYVRAGCDIVTTNTYQASV 341 (698)
Q Consensus 313 ~Pe~V~~iH~~yl~AGAdII~TNTf~as~ 341 (698)
+|+-..++-+..-++|+|.|+-|-..-+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 44444344444456799999999776554
No 352
>PRK06233 hypothetical protein; Provisional
Probab=36.43 E-value=6.4e+02 Score=28.02 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec-C-cCH--------H-------HH---HHHHHHHHh----cC-CCeEEEEEEE
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIET-L-PAQ--------E-------EA---MVLAELIKE----YP-GLKAWISFSC 130 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~ET-i-~~l--------~-------Ea---~aa~~a~~~----~~-~~Pv~iSft~ 130 (698)
..++.+.|++-++.|.++|++.|=|.= . ..+ . .. ...++++++ .+ ++.+++.+..
T Consensus 166 ~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~ 245 (372)
T PRK06233 166 LDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICR 245 (372)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeC
Confidence 456888999999999999999887752 2 000 0 11 112223332 12 4567777765
Q ss_pred cCC-CccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChh-hhHHHHHHhHhh--ccc--ccccccccccCCChHHHHHHH
Q psy13907 131 KDE-KHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPH-YVESLLTSAEVE--GQS--LELPVNNTLISRKPIQLLSIE 204 (698)
Q Consensus 131 ~~~-g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~-~i~~~l~~~~~~--~~~--~~~p~~~~~~~~gP~~~~~~~ 204 (698)
.+- +.-..+.+...++..+. ..++|++.+.+.... .-...|+.+... .+. +++=+.-...-+-|+.+...+
T Consensus 246 Gn~~~~~~~~g~y~~i~~~l~---~~~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI 322 (372)
T PRK06233 246 GNFKSTYLFSGGYEPVAKYLG---QLNYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARI 322 (372)
T ss_pred CCCCCcccccCcHHHHHHHHH---hCCCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHH
Confidence 432 22223345667777663 368999999986422 111223333111 111 233334445578899999999
Q ss_pred HHHHHcCCCCCCCcCCCcCccEEeecCCCCceeecCee
Q psy13907 205 LELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVF 242 (698)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~pnag~p~~~~~~~ 242 (698)
++..+. +|. .-|++-|+-|+=...+|..
T Consensus 323 ~~a~~~---------v~~-e~l~lspdCGf~s~~~g~~ 350 (372)
T PRK06233 323 DEATEY---------VPL-SNLALSTQCGFASTEEGNI 350 (372)
T ss_pred HHHHHh---------CCH-HHEEecCCCCCccccccCC
Confidence 988775 232 3499999999866555543
No 353
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=36.40 E-value=1.2e+02 Score=35.40 Aligned_cols=58 Identities=21% Similarity=0.436 Sum_probs=40.8
Q ss_pred CCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccC-CHHHHHHHHHHHHh-cCCC
Q psy13907 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLP-AQEEAMVLAELIKE-YPGL 460 (698)
Q Consensus 383 ~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~-~~~Eakaa~~a~~~-~~~~ 460 (698)
.+..|++++|+.. ...++++.|+++|+|+|.+-+-. +..+....++.+++ +++.
T Consensus 235 ~~l~vgaavg~~~------------------------~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~ 290 (505)
T PLN02274 235 GKLLVGAAIGTRE------------------------SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPEL 290 (505)
T ss_pred CCEEEEEEEcCCc------------------------cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCC
Confidence 4567888899842 14699999999999999998733 23333466777775 4567
Q ss_pred eEEE
Q psy13907 461 KAWI 464 (698)
Q Consensus 461 Pv~i 464 (698)
++|+
T Consensus 291 ~vi~ 294 (505)
T PLN02274 291 DVIG 294 (505)
T ss_pred cEEE
Confidence 7764
No 354
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=36.26 E-value=1.7e+02 Score=28.91 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhCceEEEecccccccccccCCCCcCcCCCcccchhhcccChHHHHHHHHHHHHHhcchhh
Q psy13907 264 DLQKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVT 333 (698)
Q Consensus 264 ~~~~~~~~~~~~~~~i~dG~~gt~l~~~~g~~~~~~~~~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~ 333 (698)
..+..+++|.+-+.+--+|. |+..+....++ ... -..|+.|++.|+++++-+.+.|.
T Consensus 57 ev~~sL~~L~~~gli~k~~~-g~y~~t~~~l~-----~~~-------~~~~~avr~~h~q~~~lA~~al~ 113 (171)
T PF14394_consen 57 EVRDSLEFLEKLGLIKKDGD-GKYVQTDKSLT-----TSS-------EIPSEAVRSYHKQMLELAQEALD 113 (171)
T ss_pred HHHHHHHHHHHCCCeEECCC-CcEEEecceee-----CCC-------CCcHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888 76665552222 111 24678999999999999998776
No 355
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=36.14 E-value=5.2e+02 Score=28.44 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=57.8
Q ss_pred CeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 46 HVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 46 ~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
..+|.++| |+|. |. .+.+++ .+.-.+.+.++|+|.+=+|--. .+...+++.+-+ .++||+
T Consensus 96 ~a~vVaDm-PfgS-----------Y~--~s~e~a---v~nA~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~-~GIPV~ 155 (332)
T PLN02424 96 RPLLVGDL-PFGS-----------YE--SSTDQA---VESAVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVE-AGIAVM 155 (332)
T ss_pred CCEEEeCC-CCCC-----------CC--CCHHHH---HHHHHHHHHHhCCcEEEECCCc--HHHHHHHHHHHH-cCCCEE
Confidence 56888887 4543 21 233443 3333444457899999999642 333344444444 689999
Q ss_pred EEEEEcCC------CccCCCCCHH---HHHHHHHhhCCCCceEEEEcCCC
Q psy13907 126 ISFSCKDE------KHTCHGDKFG---LIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 126 iSft~~~~------g~l~~G~~~~---~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
-.+=+.+. |.-.-|.+.+ ++++.....+..|+++|=+-|..
T Consensus 156 gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp 205 (332)
T PLN02424 156 GHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVP 205 (332)
T ss_pred EeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc
Confidence 44443322 2222355544 33333333345799999999987
No 356
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=35.99 E-value=3.7e+02 Score=28.21 Aligned_cols=122 Identities=10% Similarity=0.040 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCe-EEEEEEecC-CCccCCCCcHHHHHHHHHHhCCCC
Q psy13907 417 LIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLK-AWISFSCKD-EKHTCHGDKFGLIARDVYAKNPAQ 494 (698)
Q Consensus 417 l~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~P-v~iS~t~~~-~g~l~~G~~l~~~v~~~~~~~~~~ 494 (698)
++.+..||++.|.+.|+|.=++ |-..-+-|+..+++.--.+| +-=|+.++. .||+. .+-.+.++.|.. +..
T Consensus 88 iYgA~~EQm~~L~~~gI~yevv---PGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~--vpe~e~l~~la~--~~a 160 (254)
T COG2875 88 IYGALAEQMRELEALGIPYEVV---PGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTP--VPEKESLAALAK--HGA 160 (254)
T ss_pred HHHHHHHHHHHHHHcCCCeEEe---CCchHHHHHHHHhCceeecCCcceeEEEEccccCCC--CCchhHHHHHHh--cCc
Confidence 5677899999999999997554 55555566666666322355 333444443 44432 112345555532 111
Q ss_pred ceEEEEcCCChhhhHHHHHHhc-----CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHH
Q psy13907 495 LVAVGVNCLAPHYVESLLTSAG-----RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPR 553 (698)
Q Consensus 495 ~~~iGlNC~~p~~~~~~l~~l~-----~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~ 553 (698)
-++| -++...+...+++|. .++|+.+-=-++.|. +..+ ..+-+++++.+++
T Consensus 161 Tm~I---~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpD---e~ii--~GTL~dIa~kv~~ 216 (254)
T COG2875 161 TMVI---FLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPD---EKII--RGTLEDIAEKVKE 216 (254)
T ss_pred eeEe---eehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCc---ccEE--EeeHHHHHHHHHh
Confidence 1111 156777888888774 689987766666543 1212 3455666666553
No 357
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=35.96 E-value=5.9e+02 Score=27.48 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhCCCCEEE-ec---ccCCHHHH--------HHHHHHHHhcC-CCeEEEEEEecCCCccCCCCcHHHHH
Q psy13907 418 IDYHRPRIEALIQGGIDLLA-IE---TLPAQEEA--------MVLAELIKEYP-GLKAWISFSCKDEKHTCHGDKFGLIA 484 (698)
Q Consensus 418 ~~~y~~qi~~L~~~GvDlll-~E---Ti~~~~Ea--------kaa~~a~~~~~-~~Pv~iS~t~~~~g~l~~G~~l~~~v 484 (698)
.+.-.+.+++++++|+|.+. ++ ++-+..+- +-++..+++.. +.|++ -++ .|.+ ..+
T Consensus 176 t~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~c--------g~~~--~~~ 244 (335)
T cd00717 176 TDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVI-LFA--------KGAG--GLL 244 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEc--------CCCH--HHH
Confidence 33345667777889999875 44 33343333 33445555432 34443 232 1222 345
Q ss_pred HHHHHhCCCCceEEEEcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe----
Q psy13907 485 RDVYAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK---- 560 (698)
Q Consensus 485 ~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~---- 560 (698)
+.+.+ .++.+++++-. ..+..+.+.++.+ +.+.-|-- + .-. ..++++..+.+++.++.+..
T Consensus 245 ~~~~~---~~~~~~s~d~~--~dl~e~k~~~g~~--~~i~Gni~----p--~~l--~~~~e~i~~~v~~~l~~~~~~~gf 309 (335)
T cd00717 245 EDLAQ---LGADVVGLDWR--VDLDEARKRLGPK--VALQGNLD----P--ALL--YAPKEAIEKEVKRILKAFGGAPGH 309 (335)
T ss_pred HHHHh---cCCCEEEeCCC--CCHHHHHHHhCCC--eEEEeCCC----h--hhh--cCCHHHHHHHHHHHHHHhCcCCCc
Confidence 55543 34566666652 1344444444322 33333431 1 111 24678899999998876544
Q ss_pred EEe-ecC---CCchHHHHHHHhccc
Q psy13907 561 YVG-GCC---RTNADDMKNVNQVPV 581 (698)
Q Consensus 561 iiG-GCC---GTtP~hI~al~~~v~ 581 (698)
|+. ||. +|-++.|+|+.++++
T Consensus 310 Il~~gc~i~~~tp~eNi~a~v~a~~ 334 (335)
T cd00717 310 IFNLGHGILPDTPPENVKALVEAVH 334 (335)
T ss_pred eeecCCcCCCCcCHHHHHHHHHHHh
Confidence 554 555 688899999998875
No 358
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=35.86 E-value=3.4e+02 Score=29.56 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=35.0
Q ss_pred HHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-CCh-----------hhhHHHHHHhc--CCC
Q psy13907 454 IKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-LAP-----------HYVESLLTSAG--RDV 519 (698)
Q Consensus 454 ~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC-~~p-----------~~~~~~l~~l~--~~~ 519 (698)
+++..+.|+++|+...+ -..+.+++..+.+ .+.++|-+|+ +.| +.+..+++.+. .++
T Consensus 96 ~~~~~~~pvi~sI~g~~------~~e~~~~a~~~~~---agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~i 166 (334)
T PRK07565 96 AKEAVDIPVIASLNGSS------AGGWVDYARQIEQ---AGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSI 166 (334)
T ss_pred HHHhcCCcEEEEeccCC------HHHHHHHHHHHHH---cCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCC
Confidence 33334689999984322 1122345555432 4567787875 211 12445556665 578
Q ss_pred CEEEec
Q psy13907 520 PLLCCP 525 (698)
Q Consensus 520 pl~~yP 525 (698)
||+++-
T Consensus 167 PV~vKl 172 (334)
T PRK07565 167 PVAVKL 172 (334)
T ss_pred cEEEEe
Confidence 998884
No 359
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=35.43 E-value=1e+02 Score=34.50 Aligned_cols=176 Identities=18% Similarity=0.223 Sum_probs=81.7
Q ss_pred cChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCC-CHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEe
Q psy13907 312 SNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGL-SEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGS 390 (698)
Q Consensus 312 ~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~-~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGs 390 (698)
.+.+.+++.-++| .-+.+.|.||+|+-...... .+ +.+ .++-+.+++..+++++-..+. +.+. | +.
T Consensus 69 ~d~~~~~~~l~~~-GL~v~~i~p~~f~~~~~~~G---SLt~pD--~~vR~~AIe~~k~~idiA~eL-----Ga~~-I-~i 135 (378)
T TIGR02635 69 EDYEELARYAEEL-GLKIGAINPNLFQDDDYKFG---SLTHPD--KRIRRKAIDHLLECVDIAKKT-----GSKD-I-SL 135 (378)
T ss_pred cCHHHHHHHHHHc-CCceeeeeCCccCCcccCCC---CCCCCC--HHHHHHHHHHHHHHHHHHHHh-----CCCe-E-EE
Confidence 4555555553332 22455678887843322111 11 111 234556666666665432111 2222 2 22
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEE------e---cc-cCCHHHHHHHHHHHHhcCCC
Q psy13907 391 LGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLA------I---ET-LPAQEEAMVLAELIKEYPGL 460 (698)
Q Consensus 391 iGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll------~---ET-i~~~~Eakaa~~a~~~~~~~ 460 (698)
.+ .+|.+|+|.-...-.++.+++...+...... .|+++++ . +| +++...+.+ .+++. +.
T Consensus 136 W~------~DG~~~~g~~~~~~a~~rl~esL~eI~~~~~-~~v~~~iE~Kp~Ep~~y~t~~~~~~~~l~---l~~~l-g~ 204 (378)
T TIGR02635 136 WL------ADGTNYPGQDDFRSRKDRLEESLAEVYEHLG-ADMRLLIEYKFFEPAFYHTDIPDWGTAYA---LSEKL-GE 204 (378)
T ss_pred ec------CCcCcCCcccCHHHHHHHHHHHHHHHHHhCc-CCCEEEEecCCCCCceeeecCCcHHHHHH---HHHhh-CC
Confidence 22 3566666611000123445555555543332 2676655 1 23 444444433 34432 34
Q ss_pred eEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC------------CChhhhHHHHHHhc
Q psy13907 461 KAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC------------LAPHYVESLLTSAG 516 (698)
Q Consensus 461 Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC------------~~p~~~~~~l~~l~ 516 (698)
|+.+.+ |-|...-|+++++.+..+.. ...+..+=+|= ..+..+..+++++.
T Consensus 205 ~~~v~l---D~GH~~~~Enia~~~a~l~~--~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~ 267 (378)
T TIGR02635 205 RALVLV---DTGHHAQGTNIEFIVATLLD--EKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIV 267 (378)
T ss_pred CceEEe---ecCccCCCCCHHHHHHHHhh--CCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHH
Confidence 444333 66777789999986665532 12333344442 12445666666664
No 360
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=35.28 E-value=2e+02 Score=32.63 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE-----E-ecCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHH
Q psy13907 74 TTPQELIDYHRPRIEALIQGGIDLLA-----I-ETLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFG 143 (698)
Q Consensus 74 ~s~eel~~~~~~qi~~l~~~GVD~il-----~-ETi~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~ 143 (698)
++.+++ .+++..+..+|+|+|= . .++.-++| ++++.+++++. ++.+.+-++.+. |.+..
T Consensus 145 lsp~~~----a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-------~~~~~ 213 (414)
T cd08206 145 LSPKEY----ARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNIT-------ADTPE 213 (414)
T ss_pred CCHHHH----HHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccC-------CCcHH
Confidence 445544 4455556678999852 2 24444544 55556665542 666666677553 44566
Q ss_pred HHHHHHHhhCCCCceEEEEcCCC
Q psy13907 144 LIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 144 ~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
++.+..+.....+..++.+|...
T Consensus 214 em~~ra~~~~~~G~~~~mv~~~~ 236 (414)
T cd08206 214 EMIKRAEFAKELGSVIVMVDGVT 236 (414)
T ss_pred HHHHHHHHHHHhCCcEEEEeeec
Confidence 77665543334688889998854
No 361
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=35.21 E-value=1.2e+02 Score=38.97 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCc---CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhC---
Q psy13907 80 IDYHRPRIEALIQGGIDLLAIETLP---AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKN--- 153 (698)
Q Consensus 80 ~~~~~~qi~~l~~~GVD~il~ETi~---~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~--- 153 (698)
.++|.+.++.+.+.|+|.|.+=-+. ...++...++++|+..++|+ .+.+.++ .|..+...+.++...-
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi--~~H~Hdt----~Gla~an~laA~eaGad~v 761 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPI--HFHTHDT----SGIAVASMLAAVEAGVDVV 761 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeE--EEEECCC----CCcHHHHHHHHHHhCCCEE
Confidence 3688888999999999999887544 56778888888887446665 5555554 5666777776664210
Q ss_pred CCCceEEEEcCCChhhhHHHHHHhHhh
Q psy13907 154 PAQLVAVGVNCLAPHYVESLLTSAEVE 180 (698)
Q Consensus 154 ~~~~~aIGiNC~~p~~i~~~l~~~~~~ 180 (698)
+..+.++|=|.+.| .+..++..++..
T Consensus 762 D~ai~gl~G~ts~p-~~e~~v~~L~~~ 787 (1143)
T TIGR01235 762 DVAVDSMSGLTSQP-SLGAIVAALEGS 787 (1143)
T ss_pred EecchhhcCCCCCH-hHHHHHHHHHhC
Confidence 01122333333333 456666666554
No 362
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=35.11 E-value=84 Score=32.42 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=20.1
Q ss_pred ccChHHHHHHHHHHHHHhcchhhcccc
Q psy13907 311 HSNRQAVIDTHRDYVRAGCDIVTTNTY 337 (698)
Q Consensus 311 l~~Pe~V~~iH~~yl~AGAdII~TNTf 337 (698)
|++.+ +.++-+--+++|+|.|-|||=
T Consensus 133 L~~e~-i~~a~~~~~~agadfIKTsTG 158 (221)
T PRK00507 133 LTDEE-KVKACEIAKEAGADFVKTSTG 158 (221)
T ss_pred CCHHH-HHHHHHHHHHhCCCEEEcCCC
Confidence 44444 577788899999999999873
No 363
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.92 E-value=1.4e+02 Score=32.04 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY 457 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~ 457 (698)
+|+...+++|+|+|++.+| +..+++.++..+++.
T Consensus 193 eea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~ 226 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM-TPEEIREVIEALKRE 226 (278)
T ss_pred HHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhc
Confidence 4555567899999999997 688999999988763
No 364
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=34.76 E-value=5.6e+02 Score=31.48 Aligned_cols=132 Identities=12% Similarity=0.023 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-----cCcCHHHHHHHHHHHHhcC----CCeEEEEEEEcCCCccCCCCCHHHHH
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEYP----GLKAWISFSCKDEKHTCHGDKFGLIA 146 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E-----Ti~~l~Ea~aa~~a~~~~~----~~Pv~iSft~~~~g~l~~G~~~~~~~ 146 (698)
.+++...|.+.++.|.+.||+.|=+. +..+-.++.++.++.+... +.++.++..|.+.+ ++.
T Consensus 179 l~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~---------~~~ 249 (758)
T PRK05222 179 LDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLLATYFGSLN---------DAL 249 (758)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEEEeeccchh---------hHH
Confidence 46788999999999999999987664 2223335555555555432 34677777554321 333
Q ss_pred HHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhh---ccc--ccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCC
Q psy13907 147 RDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVE---GQS--LELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIP 221 (698)
Q Consensus 147 ~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~---~~~--~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~ 221 (698)
..+. ..+++++++-+.....- ++.++.. .+. +++=+.-....+-++++...++++.+. +
T Consensus 250 ~~l~---~l~Vd~l~LD~~~~~~~---l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~---------v- 313 (758)
T PRK05222 250 DLLA---SLPVDGLHLDLVRGPEQ---LAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAK---------V- 313 (758)
T ss_pred HHHH---cCCCCEEEEEeeCCccc---hHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHh---------h-
Confidence 3332 36899999999764321 3333221 111 112112122367788899998888764 1
Q ss_pred cCccEEeecCCCC
Q psy13907 222 FEAPLKAKPNRSL 234 (698)
Q Consensus 222 ~~~~~~~~pnag~ 234 (698)
.-|++-|+-||
T Consensus 314 --e~L~lspsCgL 324 (758)
T PRK05222 314 --DRLWVAPSCSL 324 (758)
T ss_pred --ccEEEeCCCCC
Confidence 34999999887
No 365
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=34.63 E-value=5.4e+02 Score=27.97 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=53.9
Q ss_pred CCCCHHH---HHHHHHHHHHHHHhCCCCEEEEec------------Cc-------------CHHHHHHHHHHHHhcC--C
Q psy13907 72 DSTTPQE---LIDYHRPRIEALIQGGIDLLAIET------------LP-------------AQEEAMVLAELIKEYP--G 121 (698)
Q Consensus 72 ~~~s~ee---l~~~~~~qi~~l~~~GVD~il~ET------------i~-------------~l~Ea~aa~~a~~~~~--~ 121 (698)
..++.+| +.+.|.+-++...++|.|.+=+=. .. +...+..+++++++.. +
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d 221 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED 221 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 3466555 556666667777789999985542 01 1334567777777653 6
Q ss_pred CeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 122 LKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 122 ~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
.|+++-++..+ ....|.++++++..+......+++.|-+
T Consensus 222 ~~v~vri~~~~--~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 222 KPLFVRISATD--WVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred ceEEEEEcccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 78888777543 2335667777766443223356666644
No 366
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=34.59 E-value=3.5e+02 Score=27.86 Aligned_cols=65 Identities=6% Similarity=-0.044 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCcc---CCCCcHHHHHHHHHH
Q psy13907 422 RPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHT---CHGDKFGLIARDVYA 489 (698)
Q Consensus 422 ~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l---~~G~~l~~~v~~~~~ 489 (698)
.++++.+++.|+|-+++-|..- .+ ..+.++++++.+-.+++|+-+++. +. .++.++.+.++.+..
T Consensus 90 ~edv~~~l~~Ga~~viigt~~~-~~-~~~~~~~~~~~~~~iivslD~~~~-~~~~~~~~~~~~~~~~~~~~ 157 (233)
T cd04723 90 LENAQEWLKRGASRVIVGTETL-PS-DDDEDRLAALGEQRLVLSLDFRGG-QLLKPTDFIGPEELLRRLAK 157 (233)
T ss_pred HHHHHHHHHcCCCeEEEcceec-cc-hHHHHHHHhcCCCCeEEEEeccCC-eeccccCcCCHHHHHHHHHH
Confidence 3677888889999888876543 33 566677777654368889987643 33 356666677776654
No 367
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.49 E-value=6.9e+02 Score=28.91 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEE-EecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHH---HHHHHHHhh
Q psy13907 77 QELIDYHRPRIEALIQGGIDLLA-IETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG---LIARDVYAK 152 (698)
Q Consensus 77 eel~~~~~~qi~~l~~~GVD~il-~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~---~~~~~l~~~ 152 (698)
+++.+.| ++...+.|+|+|- |--+.+++.++.+++++|+ .++-+.++++...+ .-.+++ +.++.+.
T Consensus 104 ddvv~~f---v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~-~G~~~~~~i~yt~s----p~~t~~y~~~~a~~l~-- 173 (468)
T PRK12581 104 DDIVDKF---ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKK-TGKEAQLCIAYTTS----PVHTLNYYLSLVKELV-- 173 (468)
T ss_pred chHHHHH---HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHH-cCCEEEEEEEEEeC----CcCcHHHHHHHHHHHH--
Confidence 3444444 5556678999974 5567788889999999998 46654444444322 122333 3444442
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
..|++.|.|-=+. .-+ -|.++.++++.+.+.
T Consensus 174 -~~Gad~I~IkDta---------------G~l-----------~P~~v~~Lv~alk~~ 204 (468)
T PRK12581 174 -EMGADSICIKDMA---------------GIL-----------TPKAAKELVSGIKAM 204 (468)
T ss_pred -HcCCCEEEECCCC---------------CCc-----------CHHHHHHHHHHHHhc
Confidence 3567766554332 112 799999999998654
No 368
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.49 E-value=6.7e+02 Score=27.68 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCc----HHHHHHHH
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDK----FGLIARDV 487 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~----l~~~v~~~ 487 (698)
.+.+.+.++= ..+...+..++|.|++=-.+-+.. +.....+.++|+...-..-..+..|+. +...++.+
T Consensus 43 ~~~~~l~~~K-~lv~~~l~~~asaILld~~yG~~a------~~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a 115 (340)
T PRK12858 43 ASYTDLVDFK-LAVSEALTPYASAILLDPEYGLPA------AKVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRI 115 (340)
T ss_pred cchhhHHHHH-HHHHHHHhhCCCEEEEccccChhh------hcccCCCCCeEEEecccccccCCCCCCccccccccHHHH
Confidence 3444454444 444445556899999842111111 122335678888854211001222221 11224444
Q ss_pred HHhCCCCceEEEEcC-CChh-------hhHHHHHHhc-----CCCCEEE----ecCCCCCcCCCCcccccCCChhhHHHH
Q psy13907 488 YAKNPAQLVAVGVNC-LAPH-------YVESLLTSAG-----RDVPLLC----CPNSGETFDPGQRIWMNKDSVPSVDTY 550 (698)
Q Consensus 488 ~~~~~~~~~~iGlNC-~~p~-------~~~~~l~~l~-----~~~pl~~----yPNaG~~~d~~~g~~~~~~~p~~~a~~ 550 (698)
.+ .+.++|.+.+ .+|+ .+...|+++. .++|+++ ||-.+.-. ...+| ....|+.++..
T Consensus 116 ~~---~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~--~~~~~-a~~~p~~V~~a 189 (340)
T PRK12858 116 KE---AGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDK--KAEEF-AKVKPEKVIKT 189 (340)
T ss_pred HH---cCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccc--ccccc-cccCHHHHHHH
Confidence 33 5566777777 5554 3444566654 6788666 55433211 11123 13467889999
Q ss_pred HHHHHH--cCCeEEe
Q psy13907 551 VPRWLD--TGVKYVG 563 (698)
Q Consensus 551 ~~~~~~--~G~~iiG 563 (698)
++.+.+ .|+.|+=
T Consensus 190 ~r~~~~~elGaDvlK 204 (340)
T PRK12858 190 MEEFSKPRYGVDVLK 204 (340)
T ss_pred HHHHhhhccCCeEEE
Confidence 999995 8987764
No 369
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.17 E-value=1.5e+02 Score=32.11 Aligned_cols=64 Identities=8% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 84 RPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
.+|++..+++|+|.|++..| +.++++.+++.++. .+.+.. ..|-+++.+.+... .|+|.|-+-
T Consensus 215 leea~eA~~aGaDiImLDnm-spe~l~~av~~~~~----~~~lEa--------SGGIt~~ni~~yA~----tGVD~IS~g 277 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNF-TLDMMREAVRVTAG----RAVLEV--------SGGVNFDTVRAFAE----TGVDRISIG 277 (294)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHhhcC----CeEEEE--------ECCCCHHHHHHHHh----cCCCEEEeC
Confidence 45666667899999999997 56788888876653 122222 13677777766553 578887665
Q ss_pred C
Q psy13907 164 C 164 (698)
Q Consensus 164 C 164 (698)
.
T Consensus 278 a 278 (294)
T PRK06978 278 A 278 (294)
T ss_pred c
Confidence 5
No 370
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=34.00 E-value=5.8e+02 Score=26.86 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=56.5
Q ss_pred HHHHHhCCCCEEEec-ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEc--
Q psy13907 425 IEALIQGGIDLLAIE-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN-- 501 (698)
Q Consensus 425 i~~L~~~GvDlll~E-Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlN-- 501 (698)
++...+.|+|.+-+- ...++.+++.+++.+++. ++.|.+++ .+ .++.+....++.+......++..|.+-
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~~--~~----a~~~~~~~~~~~~~~~~~~g~~~i~l~DT 160 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEK-GYEVFFNL--MA----ISGYSDEELLELLELVNEIKPDVFYIVDS 160 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHC-CCeEEEEE--Ee----ecCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 444567899985443 456777788888888764 55555444 34 233455433333322112345554443
Q ss_pred --CCChhhhHHHHHHhc--CC--CCEEEecCC
Q psy13907 502 --CLAPHYVESLLTSAG--RD--VPLLCCPNS 527 (698)
Q Consensus 502 --C~~p~~~~~~l~~l~--~~--~pl~~yPNa 527 (698)
+..|+.+..+++.+. .+ .|+.++...
T Consensus 161 ~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 161 FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 246999999999886 23 788776643
No 371
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=33.89 E-value=1.8e+02 Score=30.96 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHhCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 90 LIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 90 l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
..+.|+|.|.+-.|+. .+++.+++.+++. +++|+++|- |-+++.+.+.+. .++++|
T Consensus 199 A~~~gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~AsG----------GI~~~ni~~~~~----~Gvd~I 255 (272)
T cd01573 199 AAEAGADILQLDKFSP-EELAELVPKLRSLAPPVLLAAAG----------GINIENAAAYAA----AGADIL 255 (272)
T ss_pred HHHcCCCEEEECCCCH-HHHHHHHHHHhccCCCceEEEEC----------CCCHHHHHHHHH----cCCcEE
Confidence 3467899999988755 5777777777653 357766553 566666665443 567776
No 372
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=33.89 E-value=1.7e+02 Score=30.40 Aligned_cols=178 Identities=14% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy13907 349 GLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEAL 428 (698)
Q Consensus 349 g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L 428 (698)
||+.+-...+.+.-.+..++-++.. ..+..|--| ++-+..-.+.+.-.+++..+.-..-++.|
T Consensus 9 GMgpeST~~yyr~ine~~~~~~g~~--------h~~~i~~~s---------~~f~~~~~~q~~~~w~~~~~~L~~~a~~L 71 (230)
T COG1794 9 GMGPESTAPYYRKINEAVRAKLGGL--------HSAELLLYS---------VDFPEIETLQRAGEWDEAGEILIDAAKKL 71 (230)
T ss_pred CCChHHHHHHHHHHHHHHHHHhCCc--------Ccchhheec---------CCcccHHHHHccCccccHHHHHHHHHHHH
Confidence 6766666667777776666665542 112222222 11111112335668899999999999999
Q ss_pred HhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhh
Q psy13907 429 IQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYV 508 (698)
Q Consensus 429 ~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~ 508 (698)
.++|+|+|++=|-. +....+.+++..++|+. +. +..+++++.......+.-+|-+=+ |
T Consensus 72 e~~GAd~i~l~~NT----~H~~~d~iq~~~~iPll-hI-------------idaTa~~ik~~g~kkvgLLgT~~T----m 129 (230)
T COG1794 72 ERAGADFIVLPTNT----MHKVADDIQKAVGIPLL-HI-------------IDATAKAIKAAGAKKVGLLGTRFT----M 129 (230)
T ss_pred HhcCCCEEEEeCCc----HHHHHHHHHHhcCCCee-hH-------------HHHHHHHHHhcCCceeEEeeccch----H
Confidence 99999999986522 45667777776788853 43 235566664321122333333221 2
Q ss_pred HH--HHHHhc-CCCCEEEecCCCCC-------cC-CCCcccccCCChhhHHHHHHHHHHcCC-eEEeecCC
Q psy13907 509 ES--LLTSAG-RDVPLLCCPNSGET-------FD-PGQRIWMNKDSVPSVDTYVPRWLDTGV-KYVGGCCR 567 (698)
Q Consensus 509 ~~--~l~~l~-~~~pl~~yPNaG~~-------~d-~~~g~~~~~~~p~~~a~~~~~~~~~G~-~iiGGCCG 567 (698)
.+ +-+.+. .... .+-|+.-.. |+ ...|.. .+.+.+.|...++++.+.|+ -||=||-.
T Consensus 130 ~~~fY~~~l~~~gie-vvvPdd~~q~~v~~iIy~El~~G~~-~~~sr~~~~~ii~~l~~~Gae~vIlGCTE 198 (230)
T COG1794 130 EQGFYRKRLEEKGIE-VVVPDDDEQAEVNRIIYEELCQGIV-KDASRELYLAVIERLAERGAEGVILGCTE 198 (230)
T ss_pred HhHHHHHHHHHCCce-EecCCHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 22 112232 2222 345665311 11 012211 13455667788888888884 35667854
No 373
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.79 E-value=5.4e+02 Score=26.40 Aligned_cols=147 Identities=13% Similarity=0.222 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhCCCCEEEecc-----cCCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCc-------------c---CCC
Q psy13907 420 YHRPRIEALIQGGIDLLAIET-----LPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKH-------------T---CHG 477 (698)
Q Consensus 420 ~y~~qi~~L~~~GvDlll~ET-----i~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~-------------l---~~G 477 (698)
...++++.|.++|+|.|-+-- +|++.=--..++++++. +++|+=|-+.+.+..+ + ..-
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~ 92 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEAS 92 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCc
Confidence 356888889999998875421 23332233456666664 4566544444432111 0 011
Q ss_pred CcHHHHHHHHHHhCCCCceEEEEcC-CChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHH
Q psy13907 478 DKFGLIARDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLD 556 (698)
Q Consensus 478 ~~l~~~v~~~~~~~~~~~~~iGlNC-~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~ 556 (698)
..+..++..+.+. +. -.++-+|. +..+.+.++++.+..=.-.++.|-.|... |. ..+.+ --..++++.+
T Consensus 93 ~~~~~~l~~ik~~-g~-k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~------fi-~~~le-kI~~l~~~~~ 162 (220)
T PRK08883 93 EHVDRTLQLIKEH-GC-QAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQS------FI-PHTLD-KLRAVRKMID 162 (220)
T ss_pred ccHHHHHHHHHHc-CC-cEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCce------ec-HhHHH-HHHHHHHHHH
Confidence 2244555555431 22 24677888 77778888877664222244555433211 21 11112 2334455553
Q ss_pred -cC----CeEEeecCCCchHHHHHHHhc
Q psy13907 557 -TG----VKYVGGCCRTNADDMKNVNQV 579 (698)
Q Consensus 557 -~G----~~iiGGCCGTtP~hI~al~~~ 579 (698)
.| +.+.|| .++++|+.+.++
T Consensus 163 ~~~~~~~I~vdGG---I~~eni~~l~~a 187 (220)
T PRK08883 163 ESGRDIRLEIDGG---VKVDNIREIAEA 187 (220)
T ss_pred hcCCCeeEEEECC---CCHHHHHHHHHc
Confidence 34 234555 789999888764
No 374
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=33.71 E-value=4.9e+02 Score=25.87 Aligned_cols=158 Identities=13% Similarity=0.180 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEec-c-cCC---HHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHH
Q psy13907 410 DSTTPQELIDYHRPRIEALIQGGIDLLAIE-T-LPA---QEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIA 484 (698)
Q Consensus 410 ~~~t~del~~~y~~qi~~L~~~GvDlll~E-T-i~~---~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v 484 (698)
+..+.++++......++.+..+||=-++.= + .+. .....+.++++++..+.-+++...+.+...........+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (275)
T cd01292 26 EELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLL 105 (275)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEeccCCCCccccchhHHHHHH
Confidence 457889999999999999999997444321 1 111 13456677777764333333333332210000011122222
Q ss_pred HHHHHhCCCCceEEEEcC--C----ChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHc
Q psy13907 485 RDVYAKNPAQLVAVGVNC--L----APHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDT 557 (698)
Q Consensus 485 ~~~~~~~~~~~~~iGlNC--~----~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~ 557 (698)
+.+.........+++++. . .++.+.+.++... .+.|+.++...+... ...+.+.++.....
T Consensus 106 ~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~~------------~~~~~~~~~~~~~~ 173 (275)
T cd01292 106 ELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELPDP------------TRALEDLVALLRLG 173 (275)
T ss_pred HHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeEEEeeCCcccC------------ccCHHHHHHHHhcC
Confidence 333211113456677765 1 4567777777766 788998887654210 01122222222223
Q ss_pred CCeEEeecCCCchHHHHHHHhc
Q psy13907 558 GVKYVGGCCRTNADDMKNVNQV 579 (698)
Q Consensus 558 G~~iiGGCCGTtP~hI~al~~~ 579 (698)
+..+++=|+..+++.++.+++.
T Consensus 174 ~~~~~~H~~~~~~~~~~~~~~~ 195 (275)
T cd01292 174 GRVVIGHVSHLDPELLELLKEA 195 (275)
T ss_pred CCEEEECCccCCHHHHHHHHHc
Confidence 4667888888899999999875
No 375
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.27 E-value=94 Score=35.18 Aligned_cols=100 Identities=11% Similarity=0.244 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHhCCCCceEEEEcCC---ChhhhHHHHHHhcC-----CCCEEEecCCCCCcCCCCcccccCCChhhHHHH
Q psy13907 479 KFGLIARDVYAKNPAQLVAVGVNCL---APHYVESLLTSAGR-----DVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTY 550 (698)
Q Consensus 479 ~l~~~v~~~~~~~~~~~~~iGlNC~---~p~~~~~~l~~l~~-----~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~ 550 (698)
.|.+++..+++...+...+|--.|. --+++..+++++.. +.|++.-.-.|-.-+...| | + ..+...
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G-~--~---~a~~al 144 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEG-Y--D---TAVRSI 144 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHH-H--H---HHHHHH
Confidence 4556666665544455555666662 23456666666541 3444322222211000111 1 0 111222
Q ss_pred HHHHHH-----cCCeEEeecCCCchHHHHHHHhccccCCCC
Q psy13907 551 VPRWLD-----TGVKYVGGCCRTNADDMKNVNQVPVKFSIT 586 (698)
Q Consensus 551 ~~~~~~-----~G~~iiGGCCGTtP~hI~al~~~v~~~~~~ 586 (698)
++.|.. ..+||+||+ .+|.+++.|++.+++..-+
T Consensus 145 ~~~~~~~~~~~~~VNlig~~--~~~~D~~ei~~lL~~~Gl~ 183 (429)
T cd03466 145 VKNIAVDPDKIEKINVIAGM--MSPADIREIKEILREFGIE 183 (429)
T ss_pred HHHhccCCCCCCcEEEECCC--CChhHHHHHHHHHHHcCCC
Confidence 233332 239999998 5799999999999875444
No 376
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=33.19 E-value=96 Score=35.00 Aligned_cols=106 Identities=13% Similarity=0.243 Sum_probs=57.1
Q ss_pred ccCCC-CcHHHHHHHHHHhCCCCceEEEEcCC---ChhhhHHHHHHhc------CCCCEEEecCCCCCcCCCCcccccCC
Q psy13907 473 HTCHG-DKFGLIARDVYAKNPAQLVAVGVNCL---APHYVESLLTSAG------RDVPLLCCPNSGETFDPGQRIWMNKD 542 (698)
Q Consensus 473 ~l~~G-~~l~~~v~~~~~~~~~~~~~iGlNC~---~p~~~~~~l~~l~------~~~pl~~yPNaG~~~d~~~g~~~~~~ 542 (698)
....| ..|.+++..+.+...+...+|--.|. --+++...++++. ...|++.....|-.-+...| |
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G-~---- 135 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETG-Y---- 135 (428)
T ss_pred eeECcHHHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHH-H----
Confidence 33444 35557777666544455566666673 2356777777764 35677666655422111112 2
Q ss_pred ChhhHHHHHHHHHH------c-CCeEEeecCCCchHHHHHHHhccccCCC
Q psy13907 543 SVPSVDTYVPRWLD------T-GVKYVGGCCRTNADDMKNVNQVPVKFSI 585 (698)
Q Consensus 543 ~p~~~a~~~~~~~~------~-G~~iiGGCCGTtP~hI~al~~~v~~~~~ 585 (698)
...+...++.|.. . .+||+||+..+.. +++.|++.+++..-
T Consensus 136 -~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~-d~~el~~lL~~~Gl 183 (428)
T cd01965 136 -DNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPG-DVREIKRILEAFGL 183 (428)
T ss_pred -HHHHHHHHHHHhcccCCCCCCeEEEECCCCCCcc-CHHHHHHHHHHcCC
Confidence 1122223333322 2 3999999886544 66777777765443
No 377
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=33.07 E-value=8e+02 Score=28.73 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cC--cCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDLLAIE-TL--PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~E-Ti--~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
++..+.++.+.+.|+|.|.+= |+ ....++...++.+++.. .+.++|.+.++ .|.-+..++..+.
T Consensus 158 ~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~--~v~i~~H~HND----~GlA~ANslaAi~ 224 (524)
T PRK12344 158 EYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP--GVPLGIHAHND----SGCAVANSLAAVE 224 (524)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCC----CChHHHHHHHHHH
Confidence 466667777888999988754 43 35677888888888743 56688998887 4666677766664
No 378
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.01 E-value=6.5e+02 Score=29.96 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=55.7
Q ss_pred HHHHhCCCCEEE-EecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCCC
Q psy13907 88 EALIQGGIDLLA-IETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 88 ~~l~~~GVD~il-~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
+...+.|+|.|- |-.++++..++.+++++++ .++-+-+.+++.... -.+++..++.+......+++.|.+-=+.
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~-~G~~v~~~i~~t~~p----~~t~~~~~~~a~~l~~~Gad~I~i~Dt~ 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALNDVRNMEVAIKAAKK-AGAHVQGTISYTTSP----VHTIEKYVELAKELEEMGCDSICIKDMA 177 (592)
T ss_pred HHHHHCCCCEEEEEEecChHHHHHHHHHHHHH-cCCEEEEEEEeccCC----CCCHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 334568999765 4577889999999999998 466555444332211 1345444443322223567665443222
Q ss_pred hhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 167 PHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 167 p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
.-+ -|.++.++++.+++.
T Consensus 178 ---------------G~~-----------~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 178 ---------------GLL-----------TPYAAYELVKALKEE 195 (592)
T ss_pred ---------------CCc-----------CHHHHHHHHHHHHHh
Confidence 112 699999999999775
No 379
>PLN02433 uroporphyrinogen decarboxylase
Probab=32.99 E-value=6.8e+02 Score=27.31 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCc--HHHHHHHHHHhCCCCceEEEEcC
Q psy13907 425 IEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDK--FGLIARDVYAKNPAQLVAVGVNC 502 (698)
Q Consensus 425 i~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~--l~~~v~~~~~~~~~~~~~iGlNC 502 (698)
++.+.+.|+|.+-+.-..|+.|++..+ +-.+.+...+.. .+..|+. +.+.+..+.+....+...+..-|
T Consensus 246 ~~~~~~~~~~~i~~d~~~dl~e~~~~~-------g~~~~l~GNi~p--~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc 316 (345)
T PLN02433 246 LERLAGTGVDVIGLDWTVDMADARRRL-------GSDVAVQGNVDP--AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGH 316 (345)
T ss_pred HHHHHhcCCCEEEcCCCCCHHHHHHHh-------CCCeEEEeCCCc--hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCC
Confidence 445667899999988888888865432 223455666643 3445532 33333333332222224455556
Q ss_pred -C----ChhhhHHHHHHh
Q psy13907 503 -L----APHYVESLLTSA 515 (698)
Q Consensus 503 -~----~p~~~~~~l~~l 515 (698)
. .++.+..+++..
T Consensus 317 ~i~~~tp~eNi~a~v~av 334 (345)
T PLN02433 317 GVLVGTPEENVAHFFDVA 334 (345)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 2 234455555444
No 380
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=32.53 E-value=7.2e+02 Score=27.48 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEe-c----ccCCHHHHHHHHHHHHhcC----CCeEEEEEEecCCCccCCCCcHHHHH
Q psy13907 414 PQELIDYHRPRIEALIQGGIDLLAI-E----TLPAQEEAMVLAELIKEYP----GLKAWISFSCKDEKHTCHGDKFGLIA 484 (698)
Q Consensus 414 ~del~~~y~~qi~~L~~~GvDlll~-E----Ti~~~~Eakaa~~a~~~~~----~~Pv~iS~t~~~~g~l~~G~~l~~~v 484 (698)
.+++...|++.++.|.++||+.|-+ | +..+..+.+.+..+.+... +.++.++..+.+ +..+.
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~---------~~~~~ 247 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGS---------LGENL 247 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccc---------hHHHH
Confidence 5889999999999999999998743 2 2333445666666666431 355776643322 23555
Q ss_pred HHHHHhCCCCceEEEEcCC-ChhhhHHHHHH-hcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHH--cCCe
Q psy13907 485 RDVYAKNPAQLVAVGVNCL-APHYVESLLTS-AGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLD--TGVK 560 (698)
Q Consensus 485 ~~~~~~~~~~~~~iGlNC~-~p~~~~~~l~~-l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~--~G~~ 560 (698)
..+.+ .+++++++-+. ++..+.++ +. +..+..|++ |.. |.. -.| .+++++....+++..+ ..=-
T Consensus 248 ~~l~~---l~Vd~l~le~~~~~~~l~~l-~~~~~~~k~l~l----GvI-d~r-n~~--~ed~e~i~~~i~~a~~~v~~~l 315 (360)
T cd03312 248 DLLAS---LPVDGLHLDLVRGPENLEAV-LKAGFADKVLSA----GVV-DGR-NIW--RADLAASLALLETLAAILGDRL 315 (360)
T ss_pred HHHHc---CCCCEEEEEecCCcccHHHH-HhcCCCCCEEEE----EEE-cCC-CCC--cCCHHHHHHHHHHHHHHhcCcE
Confidence 55532 67889999984 43444444 32 222222211 211 111 114 5667777666666554 2334
Q ss_pred EEeecCCC
Q psy13907 561 YVGGCCRT 568 (698)
Q Consensus 561 iiGGCCGT 568 (698)
+|.=-||-
T Consensus 316 ~lsp~CgL 323 (360)
T cd03312 316 VVSPSCSL 323 (360)
T ss_pred EEECCCCC
Confidence 56667773
No 381
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=32.37 E-value=4e+02 Score=27.05 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEE
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 498 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~i 498 (698)
+.|.+.++.+++.|+|++=+|--..-...+. ....+. .+..+++|.. +-..+++-..+.+.++.+.. .+++.+
T Consensus 75 ~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~-~~~~iI~S~H--~f~~tp~~~~l~~~~~~~~~---~gadiv 147 (224)
T PF01487_consen 75 EEYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARK-GGTKIILSYH--DFEKTPSWEELIELLEEMQE---LGADIV 147 (224)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHH-TTSEEEEEEE--ESS---THHHHHHHHHHHHH---TT-SEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhh-CCCeEEEEec--cCCCCCCHHHHHHHHHHHHh---cCCCeE
Confidence 5666777778888899999998643333333 333333 5789999997 22233333335555555543 344444
Q ss_pred EEcC--CChhhhHHHHHHhc-----CCCCEEEecCC
Q psy13907 499 GVNC--LAPHYVESLLTSAG-----RDVPLLCCPNS 527 (698)
Q Consensus 499 GlNC--~~p~~~~~~l~~l~-----~~~pl~~yPNa 527 (698)
=+-| ..+++...+++... .+.|+++++-+
T Consensus 148 Kia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 148 KIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred EEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 4444 45666655555443 47999998755
No 382
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.18 E-value=2.8e+02 Score=27.29 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEE-EEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 84 RPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWIS-FSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iS-ft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
..+++.+.+.|+|++.+=..+...++..+++.+++ .++++.+. ++.. +..+....+. .+++.|++
T Consensus 67 ~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~-~g~~~~v~~~~~~---------t~~e~~~~~~----~~~d~v~~ 132 (202)
T cd04726 67 ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKK-YGKEVQVDLIGVE---------DPEKRAKLLK----LGVDIVIL 132 (202)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHH-cCCeEEEEEeCCC---------CHHHHHHHHH----CCCCEEEE
Q ss_pred c
Q psy13907 163 N 163 (698)
Q Consensus 163 N 163 (698)
+
T Consensus 133 ~ 133 (202)
T cd04726 133 H 133 (202)
T ss_pred c
No 383
>PRK12999 pyruvate carboxylase; Reviewed
Probab=32.17 E-value=1e+03 Score=30.78 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=62.6
Q ss_pred HHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEEEEEEec----CCCccCCCCcHH---HHHHHHHHhCCCCce
Q psy13907 425 IEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWISFSCK----DEKHTCHGDKFG---LIARDVYAKNPAQLV 496 (698)
Q Consensus 425 i~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~----~~g~l~~G~~l~---~~v~~~~~~~~~~~~ 496 (698)
++...+.|+|++ +|-...++.+++.+++++++. +.-+.++++.. |..+. -.++. +.++.+.+ .++.
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~--~~~~~~~~~~a~~l~~---~Ga~ 706 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRET-GKIAEAAICYTGDILDPARA--KYDLDYYVDLAKELEK---AGAH 706 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCC--CCCHHHHHHHHHHHHH---cCCC
Confidence 556678899997 567888899999999999985 55444555444 32221 13444 44444433 4455
Q ss_pred EEEEcC----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 497 AVGVNC----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 497 ~iGlNC----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
.|.+-= ..|..+..+++.+. .+.||.+|-.
T Consensus 707 ~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~H 742 (1146)
T PRK12999 707 ILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTH 742 (1146)
T ss_pred EEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 555533 36889999998887 5678777654
No 384
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.08 E-value=5.9e+02 Score=26.34 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCCCEEEec
Q psy13907 419 DYHRPRIEALIQGGIDLLAIE 439 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~E 439 (698)
+...+.++.|.++|||+|=+.
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 14 ETTLEILKALVEAGADIIELG 34 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEEC
Confidence 445677888999999999776
No 385
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=31.88 E-value=63 Score=33.61 Aligned_cols=48 Identities=23% Similarity=0.156 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCH--HHHHHHHHHHHhcCCCeEEEEE
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQ--EEAMVLAELIKEYPGLKAWISF 466 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~--~Eakaa~~a~~~~~~~Pv~iS~ 466 (698)
+...+.++.+.++|.|.|++----+. .+....+.++++..++|+|+-.
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEec
Confidence 44568899999999999999854444 4588899999966789988543
No 386
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=31.82 E-value=1.3e+02 Score=32.47 Aligned_cols=63 Identities=8% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 502 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC 502 (698)
+|+...+++|+|+|++.+|+ ..+++.++..++. +..+-+| .|-++..+.+.. ..+++.|.+-+
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~--~~~ieaS----------GGI~~~ni~~yA----~tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG--RALLEVS----------GNVTLETLREFA----ETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC--CeEEEEE----------CCCCHHHHHHHH----hcCCCEEEeCc
Confidence 45555677999999999977 7999999986653 2233222 345555444433 24566666665
No 387
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=31.73 E-value=6.6e+02 Score=26.76 Aligned_cols=140 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecC-CcCCCCCCCCC
Q psy13907 325 VRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLG-SYGAFLHDGSE 403 (698)
Q Consensus 325 l~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiG-P~~~~l~~~~e 403 (698)
+++|++.|... +.+|.......++.+.+++-+.....++.|++.-... .+-.-..| ||....
T Consensus 84 ~~~g~~~i~i~-~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v-----------~~~~~d~~~~~r~~~----- 146 (280)
T cd07945 84 KSAGAKVLNLL-TKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV-----------NIYLEDWSNGMRDSP----- 146 (280)
T ss_pred HHCCCCEEEEE-EeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE-----------EEEEEeCCCCCcCCH-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---ccCCHHHHHHHHHHHHhcCCCe-EEEEEEecCCCccCCCCc
Q psy13907 404 YRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---TLPAQEEAMVLAELIKEYPGLK-AWISFSCKDEKHTCHGDK 479 (698)
Q Consensus 404 y~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E---Ti~~~~Eakaa~~a~~~~~~~P-v~iS~t~~~~g~l~~G~~ 479 (698)
+++.+.++.+.+.|+|.|-+= -+-+..+....+..+++ ..| +.+++-+.+ ..|..
T Consensus 147 ---------------~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~--~~~~~~i~~H~Hn----d~Gla 205 (280)
T cd07945 147 ---------------DYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVK--RYPNLHFDFHAHN----DYDLA 205 (280)
T ss_pred ---------------HHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHh--hCCCCeEEEEeCC----CCCHH
Q ss_pred HHHHHHHHHHhCCCCceEEEEcCCC
Q psy13907 480 FGLIARDVYAKNPAQLVAVGVNCLA 504 (698)
Q Consensus 480 l~~~v~~~~~~~~~~~~~iGlNC~~ 504 (698)
+..++.++.. +....-..+|-.|
T Consensus 206 ~AN~laA~~a--Ga~~vd~s~~GlG 228 (280)
T cd07945 206 VANVLAAVKA--GIKGLHTTVNGLG 228 (280)
T ss_pred HHHHHHHHHh--CCCEEEEeccccc
No 388
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=31.53 E-value=2.3e+02 Score=31.48 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhc----CCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCC
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY----PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ 494 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~----~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~ 494 (698)
+.--+|+..|.++|+|++=+ |+|+..++++.-+..+++ ...|++.-+-|+- + -+++++. .
T Consensus 31 ~atv~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~--~--------lAl~a~~----~- 94 (359)
T PF04551_consen 31 EATVAQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDY--R--------LALEAIE----A- 94 (359)
T ss_dssp HHHHHHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTC--H--------HHHHHHH----C-
T ss_pred HHHHHHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCH--H--------HHHHHHH----H-
Confidence 44558999999999999987 899998887766555541 4588887776532 1 1333331 2
Q ss_pred ceEEEEcC--C---------C-hhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH----Hc
Q psy13907 495 LVAVGVNC--L---------A-PHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL----DT 557 (698)
Q Consensus 495 ~~~iGlNC--~---------~-p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~----~~ 557 (698)
++.|=+|= . + .+.+..+++... ..+|+=+=-|+|.........| ..+|+.|.+.+.+++ +.
T Consensus 95 v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky--~~t~~amvesA~~~~~~le~~ 172 (359)
T PF04551_consen 95 VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKY--GPTPEAMVESALEHVRILEEL 172 (359)
T ss_dssp -SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHH--CHHHHHHHHHHHHHHHHHHHC
T ss_pred hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhc--cchHHHHHHHHHHHHHHHHHC
Confidence 55677776 3 2 566777777776 6788888889984321111112 346777877666654 45
Q ss_pred C-CeEEeecCCCc-hHHHHHHHhccc
Q psy13907 558 G-VKYVGGCCRTN-ADDMKNVNQVPV 581 (698)
Q Consensus 558 G-~~iiGGCCGTt-P~hI~al~~~v~ 581 (698)
| =+|+=-+.-+. +..|++-+...+
T Consensus 173 ~f~~iviSlKsSdv~~~i~ayr~la~ 198 (359)
T PF04551_consen 173 GFDDIVISLKSSDVPETIEAYRLLAE 198 (359)
T ss_dssp T-GGEEEEEEBSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEeCChHHHHHHHHHHHH
Confidence 6 44444455544 455766444444
No 389
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=31.38 E-value=3.3e+02 Score=26.76 Aligned_cols=119 Identities=14% Similarity=0.036 Sum_probs=60.7
Q ss_pred HHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEe----cCCCccCCCCcHHHHHHHHHH---------hCCCC
Q psy13907 428 LIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSC----KDEKHTCHGDKFGLIARDVYA---------KNPAQ 494 (698)
Q Consensus 428 L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~----~~~g~l~~G~~l~~~v~~~~~---------~~~~~ 494 (698)
|.++.=-+|++----...++...+..+.+..++||+.+..- .+.|.....-.+.++...+.. ..+.=
T Consensus 24 Lk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~Dl 103 (162)
T TIGR00315 24 IKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDL 103 (162)
T ss_pred HHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCE
Confidence 34455556666543322344444444444458999988742 223333333344444443321 11234
Q ss_pred ceEEEEcCCChhhhHHHHHHhc-----CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHH
Q psy13907 495 LVAVGVNCLAPHYVESLLTSAG-----RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWL 555 (698)
Q Consensus 495 ~~~iGlNC~~p~~~~~~l~~l~-----~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~ 555 (698)
++.+|.||--.+.|...|+..+ +=++.- +|||...+- ..+.++|.++.++.+
T Consensus 104 vlfvG~~~y~~~~~ls~lk~f~~~~~i~l~~~y-~pnA~~Sf~--------n~~~~~~~~~l~~~~ 160 (162)
T TIGR00315 104 VLFLGIIYYYLSQMLSSLKHFSHIVTIAIDKYY-QPNADYSFP--------NLSKDEYLDYLRKLL 160 (162)
T ss_pred EEEeCCcchHHHHHHHHHHhhcCcEEEEecCCC-CCCCceecc--------ccCHHHHHHHHHHHh
Confidence 6789999955566777777554 111111 788864431 233455666665543
No 390
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.38 E-value=2.3e+02 Score=30.52 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh-cCCCeEEEEE
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE-YPGLKAWISF 466 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~-~~~~Pv~iS~ 466 (698)
+|+...++.|+|+|++.. +++.+++.++..+++ ..+.|+.+|.
T Consensus 207 eea~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leAsG 250 (288)
T PRK07428 207 EQVQEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEASG 250 (288)
T ss_pred HHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 444445578999999997 557899999988874 3456665554
No 391
>PLN02433 uroporphyrinogen decarboxylase
Probab=31.36 E-value=7.2e+02 Score=27.10 Aligned_cols=138 Identities=10% Similarity=0.114 Sum_probs=74.6
Q ss_pred HHHHHHHHhCCCCEE-Eecc---cCCHHHH--------HHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHHHHHHHH
Q psy13907 422 RPRIEALIQGGIDLL-AIET---LPAQEEA--------MVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVY 488 (698)
Q Consensus 422 ~~qi~~L~~~GvDll-l~ET---i~~~~Ea--------kaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~ 488 (698)
.+.+++++++|+|++ +++. +-+..+- +-++..+++. .+.|+ +-+.| |.+ ...+.+.
T Consensus 182 ~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~-ilh~c--------G~~--~~~~~~~ 250 (345)
T PLN02433 182 IEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPL-ILYAN--------GSG--GLLERLA 250 (345)
T ss_pred HHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeC--------CCH--HHHHHHH
Confidence 355666778999987 4442 2233332 2344455542 13453 34443 222 3345553
Q ss_pred HhCCCCceEEEEcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCe---EEeec
Q psy13907 489 AKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVK---YVGGC 565 (698)
Q Consensus 489 ~~~~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~---iiGGC 565 (698)
+ .+..++++--. ..+..+.+.++.+ +.+.-|-- |. ....+++++.+.+++.++.+.. |+.--
T Consensus 251 ~---~~~~~i~~d~~--~dl~e~~~~~g~~--~~l~GNi~-p~-------ll~gt~e~i~~~v~~~i~~~~~~g~Il~~G 315 (345)
T PLN02433 251 G---TGVDVIGLDWT--VDMADARRRLGSD--VAVQGNVD-PA-------VLFGSKEAIEKEVRDVVKKAGPQGHILNLG 315 (345)
T ss_pred h---cCCCEEEcCCC--CCHHHHHHHhCCC--eEEEeCCC-ch-------hhCCCHHHHHHHHHHHHHHcCCCCeEEecC
Confidence 3 24444444331 2344444444322 33444442 11 1145788999999998876433 66655
Q ss_pred CC----CchHHHHHHHhccccCCC
Q psy13907 566 CR----TNADDMKNVNQVPVKFSI 585 (698)
Q Consensus 566 CG----TtP~hI~al~~~v~~~~~ 585 (698)
|| |-|++|+++.++++.+.-
T Consensus 316 c~i~~~tp~eNi~a~v~av~~~~~ 339 (345)
T PLN02433 316 HGVLVGTPEENVAHFFDVARELRY 339 (345)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCh
Confidence 65 678999999999987543
No 392
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=31.33 E-value=8.3e+02 Score=29.13 Aligned_cols=91 Identities=13% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHHhCCCCEE-EEecCcCHHHHHHHHHHHHhcCCCeEEE--EEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 87 IEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWI--SFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 87 i~~l~~~GVD~i-l~ETi~~l~Ea~aa~~a~~~~~~~Pv~i--Sft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
++...+.|+|.| +|-.+.++..++.+++++|+ .++.+-. +++..+. + +=..+.+.++.+. ..+++.|.+-
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~-~--~~~~~~~~a~~l~---~~Gad~i~i~ 175 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLETALKAVRK-VGAHAQGTLSYTTSPV-H--TLQTWVDLAKQLE---DMGVDSLCIK 175 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHH-cCCeEEEEEEEeeCCc-c--CHHHHHHHHHHHH---HcCCCEEEEC
Confidence 444567899975 55677888999999999998 4666543 4444321 1 1111334444332 3567766553
Q ss_pred CCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 164 CLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 164 C~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
=+. .-+ -|.++.++++.+++.
T Consensus 176 Dt~---------------G~l-----------~P~~~~~lv~~lk~~ 196 (593)
T PRK14040 176 DMA---------------GLL-----------KPYAAYELVSRIKKR 196 (593)
T ss_pred CCC---------------CCc-----------CHHHHHHHHHHHHHh
Confidence 332 112 799999999999875
No 393
>PRK06498 isocitrate lyase; Provisional
Probab=31.31 E-value=93 Score=35.78 Aligned_cols=31 Identities=39% Similarity=0.536 Sum_probs=26.7
Q ss_pred HhCCCCEEEecc-cCCHHHHHHHHHHHHh-cCC
Q psy13907 429 IQGGIDLLAIET-LPAQEEAMVLAELIKE-YPG 459 (698)
Q Consensus 429 ~~~GvDlll~ET-i~~~~Eakaa~~a~~~-~~~ 459 (698)
...++|+||+|| -|++.+++...+++++ +++
T Consensus 342 ~apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~ 374 (531)
T PRK06498 342 LQNGADLLWIETEKPHVAQIAGMVNRIREVVPN 374 (531)
T ss_pred hcCcCcEEEecCCCCCHHHHHHHHHHHHHHCCC
Confidence 356899999998 8999999999999996 444
No 394
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=31.14 E-value=9e+02 Score=28.20 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=57.3
Q ss_pred HHHHHhCCCCEE-EEecCcCHHHHHHHHHHHHhcCCCeE--EEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 87 IEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKA--WISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 87 i~~l~~~GVD~i-l~ETi~~l~Ea~aa~~a~~~~~~~Pv--~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
++...+.|+|+| +|--++++..++.+++++++ .+.-+ -++++.... .+++..++.+......|++.|.|-
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~-ag~~~~~~i~yt~sp~------~t~e~~~~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKK-VGKHAQGTICYTVSPI------HTVEGFVEQAKRLLDMGADSICIK 175 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHH-hCCeEEEEEEEecCCC------CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 444556899997 56788999999999999998 45544 334444321 144444433322223577766543
Q ss_pred CCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 164 CLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 164 C~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
=+. .-+ -|.++..+++.|.+.
T Consensus 176 Dta---------------Gll-----------~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 176 DMA---------------ALL-----------KPQPAYDIVKGIKEA 196 (499)
T ss_pred CCc---------------cCC-----------CHHHHHHHHHHHHHh
Confidence 332 112 799999999999875
No 395
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=31.11 E-value=7.5e+02 Score=29.27 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHH---hCCCCEEEecccCCHHHHHHHHHHHHh
Q psy13907 418 IDYHRPRIEALI---QGGIDLLAIETLPAQEEAMVLAELIKE 456 (698)
Q Consensus 418 ~~~y~~qi~~L~---~~GvDlll~ETi~~~~Eakaa~~a~~~ 456 (698)
.+.|+.|++++. +.|..-|++=.+.+..|++.+..+++.
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 407 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEE 407 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHH
Confidence 467788888874 468999999999999999999998884
No 396
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=31.01 E-value=1.2e+02 Score=32.02 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=16.5
Q ss_pred CCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEE
Q psy13907 93 GGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISF 128 (698)
Q Consensus 93 ~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSf 128 (698)
..+|+++.=|-|.. ....++.+-+ .++|+++..
T Consensus 67 ~~~DvVIdfT~p~~--~~~~~~~al~-~g~~vVigt 99 (266)
T TIGR00036 67 TDPDVLIDFTTPEG--VLNHLKFALE-HGVRLVVGT 99 (266)
T ss_pred CCCCEEEECCChHH--HHHHHHHHHH-CCCCEEEEC
Confidence 45787664443333 2333333333 367777644
No 397
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=31.01 E-value=5.8e+02 Score=25.90 Aligned_cols=76 Identities=14% Similarity=-0.018 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEE
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVG 161 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIG 161 (698)
.|.+.++..++.|+|++=+|--. ......+..+++ .+.++++|+.-.+ .+.+-..+.+.+..+. ..++|.+=
T Consensus 77 ~~~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~-~~~kiI~S~H~f~--~tp~~~~l~~~~~~~~---~~gadivK 148 (225)
T cd00502 77 EYLELLEEALKLGPDYVDIELDS--ALLEELINSRKK-GNTKIIGSYHDFS--GTPSDEELVSRLEKMA---ALGADIVK 148 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHh-CCCEEEEEeccCC--CCcCHHHHHHHHHHHH---HhCCCEEE
Confidence 44445566666789999999433 334445555555 5789999986332 2221122334444443 34566666
Q ss_pred EcCC
Q psy13907 162 VNCL 165 (698)
Q Consensus 162 iNC~ 165 (698)
+=+.
T Consensus 149 la~~ 152 (225)
T cd00502 149 IAVM 152 (225)
T ss_pred EEec
Confidence 6554
No 398
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=30.85 E-value=4e+02 Score=29.12 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCc----CHHHHHHHHHHHHh-cCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhh
Q psy13907 78 ELIDYHRPRIEALIQGGIDLLAIETLP----AQEEAMVLAELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152 (698)
Q Consensus 78 el~~~~~~qi~~l~~~GVD~il~ETi~----~l~Ea~aa~~a~~~-~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~ 152 (698)
.....-+..+++-.+.|+.+.+= ... +. |.......+|+ .++.|+++++-+.... .+. .+++.+.+...
T Consensus 67 ~~~~in~~La~~a~~~g~~~~~G-s~~~~~~~~-~~~~~~~~vr~~~~~~p~i~nl~~~~~~---~~~-~~~~~~~i~~i 140 (333)
T TIGR02151 67 EAGKINRNLARAARELGIPMGVG-SQRAALKDP-ETADTFEVVREEAPNGPLIANIGAPQLV---EGG-PEEAQEAIDMI 140 (333)
T ss_pred hHHHHHHHHHHHHHHcCCCeEEc-CchhhccCh-hhHhHHHHHHHhCCCCcEEeecCchhhc---ccc-HHHHHHHHHHh
Confidence 34455666777777888776652 222 22 23333356666 4789999988664331 111 33343333221
Q ss_pred CCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEee
Q psy13907 153 NPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAK 229 (698)
Q Consensus 153 ~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (698)
...+..|++||.. ...-|. +...+ ...++.++++.+. . +.||.++
T Consensus 141 -~adal~i~ln~~q----------------~~~~p~--g~~~f--~~~le~i~~i~~~------~-----~vPVivK 185 (333)
T TIGR02151 141 -EADALAIHLNVLQ----------------ELVQPE--GDRNF--KGWLEKIAEICSQ------L-----SVPVIVK 185 (333)
T ss_pred -cCCCEEEcCcccc----------------cccCCC--CCcCH--HHHHHHHHHHHHh------c-----CCCEEEE
Confidence 2466778888865 111111 11111 3456778888776 3 6788887
No 399
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=30.80 E-value=3.2e+02 Score=29.21 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----EecccC-C-HHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHH
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLL-----AIETLP-A-QEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIA 484 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDll-----l~ETi~-~-~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v 484 (698)
-+.+-+.+|-+..++.+.+ -|..+ ++|..- . +.-.+..+..+++ .++||++-+-.-| =|.|....+
T Consensus 34 ~~~~~~~~f~~~ivd~~~~-~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~-~g~~VilD~K~~D-----I~nTv~~ya 106 (278)
T PRK00125 34 GDADGLFEFCRIIVDATAD-LVAAFKPQIAYFEAHGAEGLAQLERTIAYLRE-AGVLVIADAKRGD-----IGSTAEAYA 106 (278)
T ss_pred ccHHHHHHHHHHHHHhcCC-cccEEeccHHHHHhcCchhhhHHHHHHHHHHH-CCCcEEEEeecCC-----hHHHHHHHH
Confidence 4567788888888887764 23332 334331 1 1112335666766 3688887665544 245556666
Q ss_pred HHHHHhCCCCceEEEEcC-CChhhhHHHHHHhc-C--CCCEEE-ecCCCCCcCCCCcccccCC-C-hhhHHHHHHHHHH-
Q psy13907 485 RDVYAKNPAQLVAVGVNC-LAPHYVESLLTSAG-R--DVPLLC-CPNSGETFDPGQRIWMNKD-S-VPSVDTYVPRWLD- 556 (698)
Q Consensus 485 ~~~~~~~~~~~~~iGlNC-~~p~~~~~~l~~l~-~--~~pl~~-yPNaG~~~d~~~g~~~~~~-~-p~~~a~~~~~~~~- 556 (698)
+++.. ...+++++-+|+ .|.+.|.++++... . ...+.| --|.|...-...+ . .+. + .+.+++.+.+|.+
T Consensus 107 ~a~~~-~~~g~DavTVhp~~G~d~l~~~~~~~~~~~k~vfVlvlTSnp~s~~lq~~~-~-~~~~~l~~~V~~~a~~~~~~ 183 (278)
T PRK00125 107 KAAFE-SPLEADAVTVSPYMGFDSLEPYLEYAEEHGKGVFVLCRTSNPGGSDLQFLR-T-ADGRPLYQHVADLAAALNNL 183 (278)
T ss_pred HHHhc-CccCCcEEEECCcCCHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHhhh-c-cCCCcHHHHHHHHHHHHhcc
Confidence 66542 025678999999 89999999988764 2 233333 3444311000001 0 011 1 1234445554443
Q ss_pred ----cCCeEEe-ecCCCchHHHHHHHhcccc
Q psy13907 557 ----TGVKYVG-GCCRTNADDMKNVNQVPVK 582 (698)
Q Consensus 557 ----~G~~iiG-GCCGTtP~hI~al~~~v~~ 582 (698)
.| .+| ==|.|-|+.++.|++.+.+
T Consensus 184 ~~~~~g--~~G~VVgaT~p~e~~~iR~~~~~ 212 (278)
T PRK00125 184 GNCGYG--SIGLVVGATFPPELAAVRKILGG 212 (278)
T ss_pred ccCCCC--CCEEEECCCCHHHHHHHHHhCCC
Confidence 34 233 1233669999999998754
No 400
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=30.60 E-value=1.3e+02 Score=29.96 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=40.3
Q ss_pred cccChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEE
Q psy13907 310 LHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAG 389 (698)
Q Consensus 310 ~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAG 389 (698)
.+.+|+-.+.+++ |-+.|||+..| |+ +..+.+ +|++.+..++ .+|.+|..
T Consensus 4 Dl~~~~gr~~l~~--L~~~ADV~i~n-~r--pg~~~~-lGl~~~~l~~------------------------~nP~LV~~ 53 (191)
T PF02515_consen 4 DLKSPEGRAALRR--LLATADVVIEN-FR--PGVLER-LGLDYEALRA------------------------INPRLVYC 53 (191)
T ss_dssp ETTSHHHHHHHHH--HHHT-SEEEEE-SS--TTHHHH-TT-SHHHHHH------------------------H-TT-EEE
T ss_pred eCcCHHHHHHHHH--HHHhCCEEEEC-Cc--hhhhHh-cCCCHHHHHh------------------------hCCCCeEE
Confidence 4566665554443 45579999999 44 333444 5886544322 13678999
Q ss_pred ecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q psy13907 390 SLGSYGAFLHDGSEYRGDYIDSTTPQELIDYH 421 (698)
Q Consensus 390 siGP~~~~l~~~~ey~g~y~~~~t~del~~~y 421 (698)
|+.++|. .|+|.+-..+|.+.+++
T Consensus 54 ~isgfG~--------~Gp~~~~~~~d~~~qA~ 77 (191)
T PF02515_consen 54 SISGFGQ--------DGPYADRPGYDLVAQAA 77 (191)
T ss_dssp EEESS-S--------SSTTTTS---HHHHHHH
T ss_pred EEEeecC--------CCccccCCCCCcccccc
Confidence 9999985 35666556666665554
No 401
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.59 E-value=1.8e+02 Score=31.44 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
+|++..++.|+|+|++..| +.++++.+++.++. . +.+.. ..|-+++.+.+... .|+|.|-+-+
T Consensus 208 eea~~a~~agaDiImLDnm-spe~l~~av~~~~~--~--~~lea--------SGGI~~~ni~~yA~----tGVD~Is~ga 270 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG--R--SRIEC--------SGNIDMTTISRFRG----LAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC--c--eEEEE--------ECCCCHHHHHHHHh----cCCCEEEeCc
Confidence 4556666799999999986 57788888887653 2 22222 14777877777553 6888887766
No 402
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=30.57 E-value=4.1e+02 Score=32.72 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=47.7
Q ss_pred ecCCcC-CCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHhCCCCEEEec-----ccCCHHHHHHHHHHHHhc--
Q psy13907 390 SLGSYG-AFLHDGSEYRGDYIDSTT----PQELIDYHRPRIEALIQGGIDLLAIE-----TLPAQEEAMVLAELIKEY-- 457 (698)
Q Consensus 390 siGP~~-~~l~~~~ey~g~y~~~~t----~del~~~y~~qi~~L~~~GvDlll~E-----Ti~~~~Eakaa~~a~~~~-- 457 (698)
-+||+. ..++... .|.| +..+ .+++...|.+.++.|.+.||+.|-+. |=.+..+..++..+.++.
T Consensus 155 l~GP~T~l~Lsk~~--~~~~-~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~ 231 (766)
T PLN02475 155 LVGPVSYLLLSKPA--KGVD-KSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELES 231 (766)
T ss_pred EECHHHHHHHhccc--cccc-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHh
Confidence 789987 4444321 1112 2223 58899999999999999999987442 111224556666666643
Q ss_pred --CCCeEEEEEEecC
Q psy13907 458 --PGLKAWISFSCKD 470 (698)
Q Consensus 458 --~~~Pv~iS~t~~~ 470 (698)
.+.++++...+.+
T Consensus 232 ~~~~~~i~l~TyFg~ 246 (766)
T PLN02475 232 TLSGLNVLVETYFAD 246 (766)
T ss_pred ccCCCeEEEEccCCC
Confidence 2457776665443
No 403
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=30.20 E-value=8.1e+02 Score=30.41 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccC-CCCC---HH---HHHHH
Q psy13907 77 QELIDYHRPRIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTC-HGDK---FG---LIARD 148 (698)
Q Consensus 77 eel~~~~~~qi~~l~~~GVD~i-l~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~-~G~~---~~---~~~~~ 148 (698)
+.+..+|-.|. .++|+|+| +|..+..++.++.+++++++ .++=+=+++.+. |.++ .+.+ +. ..++.
T Consensus 629 DnVi~~Fvkqa---a~~GIDvFRiFDsLNwv~~M~vaidAV~e-~gkv~EatiCYT--GDildp~r~kY~L~YY~~lA~e 702 (1149)
T COG1038 629 DNVIREFVKQA---AKSGIDVFRIFDSLNWVEQMRVAIDAVRE-AGKVAEATICYT--GDILDPGRKKYTLDYYVKLAKE 702 (1149)
T ss_pred hHHHHHHHHHH---HhcCccEEEeehhhcchhhhhhHHHHHHh-cCCeEEEEEEec--cccCCCCcccccHHHHHHHHHH
Confidence 45555555554 36899998 67899999999999999998 565555555553 2233 2322 22 33334
Q ss_pred HHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 149 VYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 149 l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
+. ..|+..+||-= |.... .|.....++..|++.
T Consensus 703 l~---~~GaHIlaIKD------------MAGLL--------------KP~AA~~Li~aLr~~ 735 (1149)
T COG1038 703 LE---KAGAHILAIKD------------MAGLL--------------KPAAAYRLISALRET 735 (1149)
T ss_pred HH---hcCCcEEEehh------------hhhcc--------------CHHHHHHHHHHHHHh
Confidence 42 35666666643 22222 788888899999876
No 404
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=30.06 E-value=3.7e+02 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=24.7
Q ss_pred ChhhhHHHHHHhHhhcc-cccccccccccCCChHHHHHHHHHHHHc
Q psy13907 166 APHYVESLLTSAEVEGQ-SLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 166 ~p~~i~~~l~~~~~~~~-~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
.++++.++.+.+.+.+- .+.+++..|.. .|.++.++++.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~--~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLADTVGIM--TPEDVAELVRALREA 178 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEEETTS-S---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCeEEEeeCccCCc--CHHHHHHHHHHHHHh
Confidence 44555555555544331 13444444444 799999999999887
No 405
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.84 E-value=5.8e+02 Score=26.35 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCcc------CCCCcHHHHHHHHH
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHT------CHGDKFGLIARDVY 488 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l------~~G~~l~~~v~~~~ 488 (698)
++++.+++.|+|-+.+-|.. ..+.....++.+++.+. +++|+-..++.-. .++.++.+.++.+.
T Consensus 89 e~v~~~l~~Ga~kvvigt~a-~~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~ 158 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKG-IQDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLS 158 (234)
T ss_pred HHHHHHHHCCCCEEEECchH-hcCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHH
Confidence 55667777999999887643 22334444555665544 7788876543111 23444555555553
No 406
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.82 E-value=1.4e+02 Score=31.69 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEe
Q psy13907 428 LIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSC 468 (698)
Q Consensus 428 L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~ 468 (698)
..+.|+|.+++..|+ ..+.+.++..++...++|+.+|.-+
T Consensus 197 A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~~~i~i~asGGI 236 (269)
T cd01568 197 ALEAGADIIMLDNMS-PEELKEAVKLLKGLPRVLLEASGGI 236 (269)
T ss_pred HHHcCCCEEEECCCC-HHHHHHHHHHhccCCCeEEEEECCC
Confidence 345799999999975 5788887777765445677666533
No 407
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=29.81 E-value=6.4e+02 Score=26.05 Aligned_cols=222 Identities=15% Similarity=0.111 Sum_probs=114.1
Q ss_pred ccChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEe
Q psy13907 311 HSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGS 390 (698)
Q Consensus 311 l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGs 390 (698)
-..++...++-+.++++|.+.+.|.....+ |- ++++...+.+- . .. +.+.++|+.=
T Consensus 13 ~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~--------g~----sE~~lg~~l~~-------~--~~---~r~~~~i~tK 68 (283)
T PF00248_consen 13 RVSEEEAEAILRRALEAGINFFDTADSYGN--------GR----SERILGRALRK-------S--RV---PRDDIFISTK 68 (283)
T ss_dssp TSTHHHHHHHHHHHHHTT--EEEECGGGGG--------GT----HHHHHHHHHHH-------T--SS---TGGGSEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCeecccccccc--------cc----ccccccccccc-------c--cc---cccccccccc
Confidence 346677777888899999999988765311 22 22222222221 0 00 2345788777
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecccCC----HHHHHHHHHHHHhcCCCeEEEEE
Q psy13907 391 LGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPA----QEEAMVLAELIKEYPGLKAWISF 466 (698)
Q Consensus 391 iGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ETi~~----~~Eakaa~~a~~~~~~~Pv~iS~ 466 (698)
+.+.+ ......+.+.+.+...+.++.|--.-+|++++--... ..++-.+++.+++. ++-=.|.+
T Consensus 69 ~~~~~-----------~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGv 136 (283)
T PF00248_consen 69 VYGDG-----------KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKE-GKIRHIGV 136 (283)
T ss_dssp EESSS-----------STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHT-TSEEEEEE
T ss_pred ccccc-----------cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccc-cccccccc
Confidence 72211 1123467889999999988888766899998865443 44455555555552 33323344
Q ss_pred EecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC--CChhhhHHHHHHhc-CCCCEEEec-CCCCCc--CCCCccccc
Q psy13907 467 SCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC--LAPHYVESLLTSAG-RDVPLLCCP-NSGETF--DPGQRIWMN 540 (698)
Q Consensus 467 t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC--~~p~~~~~~l~~l~-~~~pl~~yP-NaG~~~--d~~~g~~~~ 540 (698)
+ +.+. +.++.+.......+..+-++. ........+++... ..+.+++|- -+|... ......+..
T Consensus 137 s---------~~~~-~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~ 206 (283)
T PF00248_consen 137 S---------NFSP-EQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPP 206 (283)
T ss_dssp E---------S--H-HHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTST
T ss_pred c---------cccc-cccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCcc
Confidence 3 2232 344444222235566777776 32334445555444 456666653 222111 000000000
Q ss_pred C--------C-----------ChhhHHHHHHHHHH---cCCeEEeecCCCchHHHHHHHhcc
Q psy13907 541 K--------D-----------SVPSVDTYVPRWLD---TGVKYVGGCCRTNADDMKNVNQVP 580 (698)
Q Consensus 541 ~--------~-----------~p~~~a~~~~~~~~---~G~~iiGGCCGTtP~hI~al~~~v 580 (698)
. . .....++.+-.|+- .+..++-|| ++|+|++...+++
T Consensus 207 ~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~--~~~~~l~en~~a~ 266 (283)
T PF00248_consen 207 SRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGA--SSPEHLEENLAAL 266 (283)
T ss_dssp TTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB---SSHHHHHHHHGGS
T ss_pred cccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCC--CCHHHHHHHHHHh
Confidence 0 0 00134556667764 456666666 8999999887777
No 408
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=29.81 E-value=8.2e+02 Score=27.25 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=40.5
Q ss_pred CCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEecc--------------c-----CC
Q psy13907 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIET--------------L-----PA 443 (698)
Q Consensus 383 ~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~ET--------------i-----~~ 443 (698)
++++|...++..+..-. +..--+++.++|.++++ +|+=+|+.|- + .+
T Consensus 13 kNRiv~apm~~~~~~~~----------dg~~t~~~~~yy~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~ 78 (382)
T cd02931 13 KNRFAMAPMGPLGLADN----------DGAFNQRGIDYYVERAK----GGTGLIITGVTMVDNEIEQFPMPSLPCPTYNP 78 (382)
T ss_pred eCCcEeCCcCcccccCC----------CCCCCHHHHHHHHHHhc----CCCCEEEEEEEEeCCcccccCCCCccccccCC
Confidence 45777776665331111 12334688889988765 6787877662 1 11
Q ss_pred ---HHHHHHHHHHHHhcCCCeEEEEEE
Q psy13907 444 ---QEEAMVLAELIKEYPGLKAWISFS 467 (698)
Q Consensus 444 ---~~Eakaa~~a~~~~~~~Pv~iS~t 467 (698)
....|.+.+++++. +-++++.+.
T Consensus 79 ~~~i~~~k~l~davh~~-G~~i~~QL~ 104 (382)
T cd02931 79 TAFIRTAKEMTERVHAY-GTKIFLQLT 104 (382)
T ss_pred HHHhHHHHHHHHHHHHc-CCEEEEEcc
Confidence 23356677777764 556666653
No 409
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=29.76 E-value=5.2e+02 Score=26.99 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHHc
Q psy13907 196 KPIQLLSIELELAAA 210 (698)
Q Consensus 196 gP~~~~~~~~~l~~~ 210 (698)
-|.++.++++.++++
T Consensus 168 ~P~~v~~lv~~l~~~ 182 (263)
T cd07943 168 LPDDVRERVRALREA 182 (263)
T ss_pred CHHHHHHHHHHHHHh
Confidence 799999999999886
No 410
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=29.59 E-value=80 Score=33.98 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCEEEEec-CcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 82 YHRPRIEALIQGGIDLLAIET-LPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ET-i~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
.--+|++++.++|+|.+.+|- ..+.+|++.+.+.+.. .+|+.
T Consensus 167 eAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~--p~pv~ 209 (290)
T TIGR02321 167 EAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPG--KVPLV 209 (290)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCC--CCCeE
Confidence 345589999999999999997 5899998888776532 35765
No 411
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=29.44 E-value=4.1e+02 Score=27.89 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCEEEEec----CcCHHHHHHHHHHHHhcCCCeE
Q psy13907 83 HRPRIEALIQGGIDLLAIET----LPAQEEAMVLAELIKEYPGLKA 124 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il~ET----i~~l~Ea~aa~~a~~~~~~~Pv 124 (698)
-.++++.+++.|+|+|=+=. ....+|++-++..+++..+.|+
T Consensus 28 ~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~~~pi 73 (252)
T cd00740 28 ALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEPTVPL 73 (252)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 34567777789999987655 3345566666666776556663
No 412
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.34 E-value=4.4e+02 Score=30.51 Aligned_cols=93 Identities=22% Similarity=0.357 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCC
Q psy13907 317 VIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGA 396 (698)
Q Consensus 317 V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~ 396 (698)
+.+.-+.++++|+|+|.-.+=+.+...+ .++-++.+.+| | +--.+||.+...
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a~~~~~~~------------------~~~i~~ik~~~-------p-~~~v~agnv~t~-- 279 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTAHGHQEKM------------------LEALRAVRALD-------P-GVPIVAGNVVTA-- 279 (479)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCccHHH------------------HHHHHHHHHHC-------C-CCeEEeeccCCH--
Confidence 4566778899999998777655442211 23334455554 1 124677766552
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---------------ccCCHHHHHHHHHHHHhcCCCe
Q psy13907 397 FLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---------------TLPAQEEAMVLAELIKEYPGLK 461 (698)
Q Consensus 397 ~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E---------------Ti~~~~Eakaa~~a~~~~~~~P 461 (698)
++++.|.++|+|.+-+- +.|++.-...+.+++++ .+.|
T Consensus 280 --------------------------~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~-~~~~ 332 (479)
T PRK07807 280 --------------------------EGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARE-LGAH 332 (479)
T ss_pred --------------------------HHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHh-cCCc
Confidence 66778888999998621 23444444445555545 3688
Q ss_pred EEE
Q psy13907 462 AWI 464 (698)
Q Consensus 462 v~i 464 (698)
|+.
T Consensus 333 via 335 (479)
T PRK07807 333 VWA 335 (479)
T ss_pred EEe
Confidence 873
No 413
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=29.33 E-value=1.4e+02 Score=32.55 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=11.4
Q ss_pred HHHHHHHhCCCCEEEE
Q psy13907 85 PRIEALIQGGIDLLAI 100 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ 100 (698)
++++.+.++|||+|.+
T Consensus 147 ~~A~~l~~aGaD~I~v 162 (325)
T cd00381 147 EAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 4556667788888876
No 414
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=29.27 E-value=6.8e+02 Score=29.26 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 83 HRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
|.+.++..++.|+|++=+|-... +++...+..++. .+.++++|+. +-..+.+-..+.+.++.+. ..++|.+=+
T Consensus 99 ~~~ll~~~~~~~~d~iDiEl~~~-~~~~~~~~~~~~-~~~~vI~S~H--~f~~tP~~~el~~~~~~~~---~~gaDi~Ki 171 (529)
T PLN02520 99 RQDALRLAMELGADYVDVELKVA-HEFINSISGKKP-EKCKVIVSSH--NYENTPSVEELGNLVARIQ---ATGADIVKI 171 (529)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCc-hhHHHHHHhhhh-cCCEEEEEec--CCCCCCCHHHHHHHHHHHH---HhCCCEEEE
Confidence 34445555667899999996443 355556666665 4788999875 2223333222334444443 357788777
Q ss_pred cCCC
Q psy13907 163 NCLA 166 (698)
Q Consensus 163 NC~~ 166 (698)
-++.
T Consensus 172 a~~~ 175 (529)
T PLN02520 172 ATTA 175 (529)
T ss_pred ecCC
Confidence 7753
No 415
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=29.09 E-value=5.5e+02 Score=28.11 Aligned_cols=128 Identities=12% Similarity=0.004 Sum_probs=66.6
Q ss_pred CCCH---HHHHHHHHHHHHHHHhCCCCEEEEecCc-------------------------CHHHHHHHHHHHHhcCCC-e
Q psy13907 73 STTP---QELIDYHRPRIEALIQGGIDLLAIETLP-------------------------AQEEAMVLAELIKEYPGL-K 123 (698)
Q Consensus 73 ~~s~---eel~~~~~~qi~~l~~~GVD~il~ETi~-------------------------~l~Ea~aa~~a~~~~~~~-P 123 (698)
.+|. +++.+.|..-++...++|.|.+=+=.-. ...=++.+++++|+..+. |
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~ 220 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR 220 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc
Confidence 4554 4466677777777788999998553111 122244566666654333 6
Q ss_pred EEEEEEEcCCC-ccCCCCCHHHHHHHHHhhCCCCceEEEEcCCChh-----hhHHHHHHhHhhcccccccc-cccccCCC
Q psy13907 124 AWISFSCKDEK-HTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPH-----YVESLLTSAEVEGQSLELPV-NNTLISRK 196 (698)
Q Consensus 124 v~iSft~~~~g-~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~~p~-----~i~~~l~~~~~~~~~~~~p~-~~~~~~~g 196 (698)
+++-++..+.. ....|.++++.+..++.....++|.|-+.+.... .-....+.+++. ..+|+ -.|.+.
T Consensus 221 v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~---~~ipvi~~G~i~-- 295 (338)
T cd02933 221 VGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKA---FKGPLIAAGGYD-- 295 (338)
T ss_pred eEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHH---cCCCEEEECCCC--
Confidence 77766654321 1123557776665443323356788777654321 122223333332 23454 344453
Q ss_pred hHHHHHHHH
Q psy13907 197 PIQLLSIEL 205 (698)
Q Consensus 197 P~~~~~~~~ 205 (698)
|+.+.++++
T Consensus 296 ~~~a~~~l~ 304 (338)
T cd02933 296 AESAEAALA 304 (338)
T ss_pred HHHHHHHHH
Confidence 776666544
No 416
>PRK15108 biotin synthase; Provisional
Probab=29.08 E-value=6.8e+02 Score=27.48 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.3
Q ss_pred HHhcchhhcccccCCh
Q psy13907 326 RAGCDIVTTNTYQASV 341 (698)
Q Consensus 326 ~AGAdII~TNTf~as~ 341 (698)
++|-.+.+-+||..++
T Consensus 307 ~~g~~~~~~~~~~~~~ 322 (345)
T PRK15108 307 KLGLNPQQTAVLAGDN 322 (345)
T ss_pred HcCCCcccccccccch
Confidence 7888888888886554
No 417
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.03 E-value=4.8e+02 Score=26.55 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHH
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDV 487 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~ 487 (698)
+|++...++|+++++= |.+. ..+++.+++ .++|++ +.-.|.+++..+.
T Consensus 67 e~a~~ai~aGA~FivS---P~~~--~~vi~~a~~-~~i~~i-----------PG~~TptEi~~A~ 114 (201)
T PRK06015 67 KQFEDAAKAGSRFIVS---PGTT--QELLAAAND-SDVPLL-----------PGAATPSEVMALR 114 (201)
T ss_pred HHHHHHHHcCCCEEEC---CCCC--HHHHHHHHH-cCCCEe-----------CCCCCHHHHHHHH
Confidence 6788888999999984 3332 345556666 478875 4556788888876
No 418
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.96 E-value=6.4e+02 Score=25.78 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=20.4
Q ss_pred ccChHHHHHHHHHHHHHhcchhhcc
Q psy13907 311 HSNRQAVIDTHRDYVRAGCDIVTTN 335 (698)
Q Consensus 311 l~~Pe~V~~iH~~yl~AGAdII~TN 335 (698)
..+++-..++-+.-.++|.++|+--
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEit 47 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVT 47 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3577788888999999999999743
No 419
>KOG0623|consensus
Probab=28.95 E-value=1e+02 Score=33.67 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=30.2
Q ss_pred CccEEeecCCCCceeecCeeeeeeeccchhhhccccchhh---hhHHHHHHHHhhCceEE
Q psy13907 223 EAPLKAKPNRSLFETYHGVFVNVQYNLKCELKRSHFNILS---KDLQKINEFILENKLYL 279 (698)
Q Consensus 223 ~~~~~~~pnag~p~~~~~~~~~~~~~~~~~~~~~~~~~f~---~~~~~~~~~~~~~~~~i 279 (698)
+.|+.+.+-||.|+-....|.. -+-+++.-++ .|+ -..+.++|.++..++.+
T Consensus 485 ~IPVIASSGAG~P~HFeEvF~k--T~adAaLaAG---iFHR~e~~i~dVKEyL~eh~i~V 539 (541)
T KOG0623|consen 485 GIPVIASSGAGTPDHFEEVFEK--TNADAALAAG---IFHRKEVPIQDVKEYLQEHRIEV 539 (541)
T ss_pred CCceEecCCCCCcHHHHHHHHh--cCchhhhhcc---ceecCccchHHHHHHHHhhceee
Confidence 7899999999999866543321 1222333333 342 34456677766666544
No 420
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=28.85 E-value=1.5e+02 Score=30.75 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCC
Q psy13907 194 SRKPIQLLSIELELAAAGKMPSGT 217 (698)
Q Consensus 194 ~~gP~~~~~~~~~l~~~~~~~~~~ 217 (698)
+.|++-+.+.++.|.++|+.+.|+
T Consensus 88 D~G~~gl~~Tl~~L~~~gi~~~Ga 111 (250)
T PF09587_consen 88 DYGEEGLLDTLEALDKAGIPYVGA 111 (250)
T ss_pred cccHHHHHHHHHHHHHCCCcEeEC
Confidence 459999999999999998888884
No 421
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.79 E-value=1.7e+02 Score=31.49 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC
Q psy13907 424 RIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 502 (698)
Q Consensus 424 qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC 502 (698)
|+...++.|+|+|++..| ++.+++.++..++. ..|+-+| .|-++..+.+.. . .+++.|.+-.
T Consensus 206 ea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~~--~~~leaS----------GGI~~~ni~~yA-~---tGVD~Is~Ga 267 (281)
T PRK06106 206 QLEEALELGVDAVLLDNM-TPDTLREAVAIVAG--RAITEAS----------GRITPETAPAIA-A---SGVDLISVGW 267 (281)
T ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhCC--CceEEEE----------CCCCHHHHHHHH-h---cCCCEEEeCh
Confidence 444456789999999996 57899999887753 3343322 345555444433 2 4566666655
No 422
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=28.71 E-value=5.5e+02 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCEEEEecCc--CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 86 RIEALIQGGIDLLAIETLP--AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 86 qi~~l~~~GVD~il~ETi~--~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
-++.|.++|+|++.+-.-. ....+...+..+|+. ...++. |=.+++++..... .|+|.||--
T Consensus 56 ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~-~~l~MA-----------Dist~ee~~~A~~----~G~D~I~TT 119 (192)
T PF04131_consen 56 EVDALAEAGADIIALDATDRPRPETLEELIREIKEK-YQLVMA-----------DISTLEEAINAAE----LGFDIIGTT 119 (192)
T ss_dssp HHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHC-TSEEEE-----------E-SSHHHHHHHHH----TT-SEEE-T
T ss_pred HHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHh-CcEEee-----------ecCCHHHHHHHHH----cCCCEEEcc
Confidence 3667888999999998332 234566677777773 355553 3346888887653 689988876
Q ss_pred CCC
Q psy13907 164 CLA 166 (698)
Q Consensus 164 C~~ 166 (698)
=+.
T Consensus 120 LsG 122 (192)
T PF04131_consen 120 LSG 122 (192)
T ss_dssp TTT
T ss_pred ccc
Confidence 544
No 423
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=28.71 E-value=3.5e+02 Score=30.66 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----EEe-cCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHH
Q psy13907 74 TTPQELIDYHRPRIEALIQGGIDLL-----AIE-TLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFG 143 (698)
Q Consensus 74 ~s~eel~~~~~~qi~~l~~~GVD~i-----l~E-Ti~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~ 143 (698)
++.+++. +++..+..+|+|+| +.. ++.-++| ++++.+++++. ++...+-++.+. |. ..
T Consensus 156 lsp~~~a----~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-------~~-~~ 223 (406)
T cd08207 156 LTPEETA----ALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNIT-------DD-ID 223 (406)
T ss_pred CCHHHHH----HHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecC-------CC-HH
Confidence 4455544 45555667899984 333 2334443 55666666542 677777677664 22 56
Q ss_pred HHHHHHHhhCCCCceEEEEcCCC
Q psy13907 144 LIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 144 ~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
+..+..+.....+..++.+|...
T Consensus 224 em~~ra~~~~~~G~~~~mv~~~~ 246 (406)
T cd08207 224 EMRRNHDLVVEAGGTCVMVSLNS 246 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEeccc
Confidence 66665432234677888888754
No 424
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=28.69 E-value=2.8e+02 Score=31.22 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCE------EEEecCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDL------LAIETLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~------il~ETi~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
+.|.+++..+..+|+|+ +.=..+.-++| ++++.+++++. ++.+.+-.+.+..+ ..+..+..+
T Consensus 140 ~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~--------~~em~~ra~ 211 (391)
T cd08209 140 DDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGP--------VFTLKEKAR 211 (391)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC--------HHHHHHHHH
Q ss_pred hhCCCCceEEEEcCCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcCccEEeec
Q psy13907 151 AKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKP 230 (698)
Q Consensus 151 ~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 230 (698)
.....++.++.+|-.. .=...+..|.+..+. ++||.++|
T Consensus 212 ~~~~~G~~~~mv~~~~-----------------------------~G~~~l~~l~~~~~~------------~lpIhaHr 250 (391)
T cd08209 212 RLVEAGANALLFNVFA-----------------------------YGLDVLEALASDPEI------------NVPIFAHP 250 (391)
T ss_pred HHHHhCCCEEEEeccc-----------------------------cchHHHHHHHhcCcC------------CcEEEecC
Q ss_pred C
Q psy13907 231 N 231 (698)
Q Consensus 231 n 231 (698)
|
T Consensus 251 a 251 (391)
T cd08209 251 A 251 (391)
T ss_pred C
No 425
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=28.59 E-value=7.2e+02 Score=26.21 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEe-cCc--CHHHHHHHHHHHHhcCCCe-EEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDLLAIE-TLP--AQEEAMVLAELIKEYPGLK-AWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~E-Ti~--~l~Ea~aa~~a~~~~~~~P-v~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
+++.+.++.+.+.|+|.|.+= |+- ...++...++.+++. .| +-++|.+.++ .|..+..++..+.
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~--~~~~~l~~H~Hnd----~Gla~An~laA~~ 218 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRER--LPGVPLGIHAHND----SGLAVANSLAAVE 218 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh--CCCCeeEEEecCC----CCcHHHHHHHHHH
Confidence 466667777788899987653 543 567788888888873 24 5567877776 4777788887774
No 426
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.56 E-value=5.7e+02 Score=26.05 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCEEEecccC----CHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCce
Q psy13907 421 HRPRIEALIQGGIDLLAIETLP----AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLV 496 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ETi~----~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~ 496 (698)
+.++++.+.+.|+|.+.+=... ...+....+.-+.+..+.|++|..-+++ ++++-..+ ..+..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~---------~~~~~~~~----~~Ga~ 100 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRS---------AEDAASLL----DLGVD 100 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCC---------HHHHHHHH----HcCCC
Q ss_pred EEEEcC---CChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChh-hHHHHHHHHHHcCCeEE
Q psy13907 497 AVGVNC---LAPHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVP-SVDTYVPRWLDTGVKYV 562 (698)
Q Consensus 497 ~iGlNC---~~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~-~~a~~~~~~~~~G~~ii 562 (698)
.|-++. ..|+.+..+.+.+. ..+.+++--..|... ..| | ..+.. ...+.++.+.+.|+..+
T Consensus 101 ~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~--~~g-~--~~~~~~~~~~~~~~~~~~G~~~i 166 (241)
T PRK13585 101 RVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVV--IKG-W--TEKTGYTPVEAAKRFEELGAGSI 166 (241)
T ss_pred EEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEE--ECC-C--cccCCCCHHHHHHHHHHcCCCEE
No 427
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.52 E-value=2.2e+02 Score=30.29 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEe
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSC 468 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~ 468 (698)
+|+....+.|+|.+.+..|+ +.+.+.++..++. ++|+.+|.-+
T Consensus 193 eea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~--~ipi~AiGGI 235 (268)
T cd01572 193 EQLKEALEAGADIIMLDNMS-PEELREAVALLKG--RVLLEASGGI 235 (268)
T ss_pred HHHHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC--CCcEEEECCC
Confidence 44444556899999999986 7888887776643 5787766533
No 428
>PRK09389 (R)-citramalate synthase; Provisional
Probab=28.48 E-value=5.5e+02 Score=29.75 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCC
Q psy13907 325 VRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEY 404 (698)
Q Consensus 325 l~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey 404 (698)
+++|+++|... ...|...+...++++.+++.+....+++.|++.-... .+++--.+..+-
T Consensus 83 ~~~g~~~v~i~-~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v----------------~~~~ed~~r~~~--- 142 (488)
T PRK09389 83 LECDVDSVHLV-VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV----------------ELSGEDASRADL--- 142 (488)
T ss_pred HhCCcCEEEEE-EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE----------------EEEEeeCCCCCH---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEec---ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHH
Q psy13907 405 RGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIE---TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFG 481 (698)
Q Consensus 405 ~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~E---Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~ 481 (698)
++..+.++.+.+.|+|.|-+= -+....+....+..+++ ..++-+++-+.+ -.|..+.
T Consensus 143 --------------~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~--~~~v~l~~H~HN----D~GlAvA 202 (488)
T PRK09389 143 --------------DFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSE--LVKGPVSIHCHN----DFGLAVA 202 (488)
T ss_pred --------------HHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHh--hcCCeEEEEecC----CccHHHH
Q ss_pred HHHHHHHHhCCCCceEEEEcCCC
Q psy13907 482 LIARDVYAKNPAQLVAVGVNCLA 504 (698)
Q Consensus 482 ~~v~~~~~~~~~~~~~iGlNC~~ 504 (698)
.++.++.. +....-.-+|..|
T Consensus 203 NalaAv~a--Ga~~Vd~Ti~GiG 223 (488)
T PRK09389 203 NTLAALAA--GADQVHVTINGIG 223 (488)
T ss_pred HHHHHHHc--CCCEEEEEccccc
No 429
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=28.47 E-value=3e+02 Score=31.86 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE-----Ee-cCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHH
Q psy13907 74 TTPQELIDYHRPRIEALIQGGIDLLA-----IE-TLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFG 143 (698)
Q Consensus 74 ~s~eel~~~~~~qi~~l~~~GVD~il-----~E-Ti~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~ 143 (698)
++.+++. +++..+..+|+|+|= .. .+.-++| ++++.+++++. ++.+.+.++.+. +.+..
T Consensus 180 Lsp~~~A----~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-------a~~~~ 248 (475)
T CHL00040 180 LSAKNYG----RAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNAT-------AGTCE 248 (475)
T ss_pred CCHHHHH----HHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccC-------CCCHH
Confidence 4445444 445556678999862 22 2333333 55666666542 566655566543 33456
Q ss_pred HHHHHHHhhCCCCceEEEEcCCC
Q psy13907 144 LIARDVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 144 ~~~~~l~~~~~~~~~aIGiNC~~ 166 (698)
++.+..+.....+..++.+|-..
T Consensus 249 em~~ra~~a~e~G~~~~mv~~~~ 271 (475)
T CHL00040 249 EMYKRAVFARELGVPIVMHDYLT 271 (475)
T ss_pred HHHHHHHHHHHcCCceEEEeccc
Confidence 66665533234677778887754
No 430
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=28.42 E-value=7.6e+02 Score=26.44 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccCCH-----------HHHHHHHHHHHhc---CCCeEEEEEEecCCCccCCC
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIETLPAQ-----------EEAMVLAELIKEY---PGLKAWISFSCKDEKHTCHG 477 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~-----------~Eakaa~~a~~~~---~~~Pv~iS~t~~~~g~l~~G 477 (698)
.+.++++..-+..+.-++..|| ..+|...+. ...++++.++++. .++-+-+..++.+. .+.
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv--~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~---~~~ 139 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGV--VYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRH---KQP 139 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--EEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCC---CCH
Confidence 4678888888888888888998 567754332 2234455555431 23333333343331 112
Q ss_pred CcHHHHHHHHHHhCCCCceEEEEcCC----ChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHH
Q psy13907 478 DKFGLIARDVYAKNPAQLVAVGVNCL----APHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVP 552 (698)
Q Consensus 478 ~~l~~~v~~~~~~~~~~~~~iGlNC~----~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~ 552 (698)
+.+.+.++.+.......+.++|+.+. .++.+...++... ...++-++..- .. ++.... .
T Consensus 140 ~~~~~~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E--~~-----------~~~~~~---~ 203 (324)
T TIGR01430 140 EAAEETLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGE--LG-----------GPESVR---E 203 (324)
T ss_pred HHHHHHHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCC--CC-----------ChHHHH---H
Confidence 23334444432211123455555552 1344445544444 56666555432 10 111121 1
Q ss_pred HHHHcCCeEEeecCCC--chHHHHHHHhc
Q psy13907 553 RWLDTGVKYVGGCCRT--NADDMKNVNQV 579 (698)
Q Consensus 553 ~~~~~G~~iiGGCCGT--tP~hI~al~~~ 579 (698)
.....|+..+|-|+.. +|+.|+.|++.
T Consensus 204 ~~~~~g~~ri~Hg~~l~~~~~~i~~l~~~ 232 (324)
T TIGR01430 204 ALDDLGATRIGHGVRALEDPELLKRLAQE 232 (324)
T ss_pred HHHHcCchhcchhhhhccCHHHHHHHHHc
Confidence 1225688888988888 77889988865
No 431
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=28.36 E-value=7.2e+02 Score=26.81 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=7.1
Q ss_pred HHHHHHHHHHc
Q psy13907 200 LLSIELELAAA 210 (698)
Q Consensus 200 ~~~~~~~l~~~ 210 (698)
...+++++.+.
T Consensus 149 ~~~ll~~v~~~ 159 (307)
T TIGR03151 149 TMALVPQVVDA 159 (307)
T ss_pred HHHHHHHHHHH
Confidence 45677777665
No 432
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.33 E-value=4.6e+02 Score=26.56 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 502 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC 502 (698)
+|++...++|+++++- |.+. ..+++.+++. ++|++ +.-.|.+++..++. .+...+=+-=
T Consensus 71 e~a~~a~~aGA~FivS---P~~~--~~v~~~~~~~-~i~~i-----------PG~~TptEi~~A~~----~G~~~vK~FP 129 (196)
T PF01081_consen 71 EQAEAAIAAGAQFIVS---PGFD--PEVIEYAREY-GIPYI-----------PGVMTPTEIMQALE----AGADIVKLFP 129 (196)
T ss_dssp HHHHHHHHHT-SEEEE---SS----HHHHHHHHHH-TSEEE-----------EEESSHHHHHHHHH----TT-SEEEETT
T ss_pred HHHHHHHHcCCCEEEC---CCCC--HHHHHHHHHc-CCccc-----------CCcCCHHHHHHHHH----CCCCEEEEec
Confidence 6778888899999985 4443 3455566653 78865 23346677777763 2323333322
Q ss_pred CChhhh--HHHHHHhcCCCC-EEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEeecC
Q psy13907 503 LAPHYV--ESLLTSAGRDVP-LLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCC 566 (698)
Q Consensus 503 ~~p~~~--~~~l~~l~~~~p-l~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCC 566 (698)
.+.+ ..+++.|+...| +-+.|-.|... + -+.+|++.|+..+|+--
T Consensus 130 --A~~~GG~~~ik~l~~p~p~~~~~ptGGV~~-------------~----N~~~~l~ag~~~vg~Gs 177 (196)
T PF01081_consen 130 --AGALGGPSYIKALRGPFPDLPFMPTGGVNP-------------D----NLAEYLKAGAVAVGGGS 177 (196)
T ss_dssp --TTTTTHHHHHHHHHTTTTT-EEEEBSS--T-------------T----THHHHHTSTTBSEEEES
T ss_pred --chhcCcHHHHHHHhccCCCCeEEEcCCCCH-------------H----HHHHHHhCCCEEEEECc
Confidence 1111 245555553222 44456555322 1 24789999965555433
No 433
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.26 E-value=3.6e+02 Score=29.44 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCEEEEec-CcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 83 HRPRIEALIQGGIDLLAIET-LPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~il~ET-i~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
..++++.++++|+|+|.+-+ ..+.......++.+++. +++|+++ | +..+.+.+...+. .++|+|
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-------G---~v~t~~~A~~l~~----aGaD~I 160 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-------G---NVVTAEAARDLID----AGADGV 160 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-------C---CCCCHHHHHHHHh----cCCCEE
Confidence 45688899999999998875 33445566677777763 3467775 1 2344555544332 678887
Q ss_pred EE
Q psy13907 161 GV 162 (698)
Q Consensus 161 Gi 162 (698)
-+
T Consensus 161 ~v 162 (325)
T cd00381 161 KV 162 (325)
T ss_pred EE
Confidence 55
No 434
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.25 E-value=6.7e+02 Score=26.94 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccC------------------------CC
Q psy13907 84 RPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTC------------------------HG 139 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~------------------------~G 139 (698)
++.++...+.|-=+..|-+. +++-++++++++++ .+.|++++++-..-.... +|
T Consensus 7 k~ll~~A~~~~yaV~AfN~~-n~e~~~avi~AAe~-~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~ 84 (283)
T PRK07998 7 RILLDRIQEKHVLAGAFNTT-NLETTISILNAIER-SGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHG 84 (283)
T ss_pred HHHHHHHHHCCCEEEEEeeC-CHHHHHHHHHHHHH-hCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCC
Q ss_pred CCHHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhc--ccccccc--ccccc-------------CCChHHHHH
Q psy13907 140 DKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEG--QSLELPV--NNTLI-------------SRKPIQLLS 202 (698)
Q Consensus 140 ~~~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~--~~~~~p~--~~~~~-------------~~gP~~~~~ 202 (698)
.+++.+.+.+. .|.+.|++-.|+..+-+.+-..-+... ++.++|+ +.|.+ -..|++..+
T Consensus 85 ~~~e~i~~Ai~----~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~ 160 (283)
T PRK07998 85 KTFEDVKQAVR----AGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKD 160 (283)
T ss_pred CCHHHHHHHHH----cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHH
Q ss_pred HHHHH
Q psy13907 203 IELEL 207 (698)
Q Consensus 203 ~~~~l 207 (698)
++++.
T Consensus 161 Fv~~T 165 (283)
T PRK07998 161 FVERT 165 (283)
T ss_pred HHHHh
No 435
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=28.22 E-value=2.8e+02 Score=29.82 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE 456 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~ 456 (698)
+|++..+++|+|++++.. ++..+++.++..+++
T Consensus 200 eqa~ea~~agaDiI~LDn-~~~e~l~~av~~~~~ 232 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDK-FSPQQATEIAQIAPS 232 (284)
T ss_pred HHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhhc
Confidence 455556789999999987 468899999888764
No 436
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=28.17 E-value=1.6e+02 Score=30.61 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCEEEecccC---CHHHHHHHHHHHHhcCCCeEEEE
Q psy13907 419 DYHRPRIEALIQGGIDLLAIETLP---AQEEAMVLAELIKEYPGLKAWIS 465 (698)
Q Consensus 419 ~~y~~qi~~L~~~GvDlll~ETi~---~~~Eakaa~~a~~~~~~~Pv~iS 465 (698)
..|.+++...+++|.|++. |... +..+++.++.++++ .+.+++|.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~-~g~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARS-SGRKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHh-cCCEEEEC
Confidence 5688999999999999988 5543 66788888888887 57777765
No 437
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.17 E-value=2.1e+02 Score=30.67 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
+|++..++.|+|+|++..| +.++++.+++.++. .. .+.. ..|-++..+.+... .++|.|-+-.
T Consensus 204 ee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~--~~--~lea--------SGgI~~~ni~~yA~----tGVD~Is~ga 266 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDG--RA--IVEA--------SGNVNLNTVGAIAS----TGVDVISVGA 266 (281)
T ss_pred HHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCC--Ce--EEEE--------ECCCCHHHHHHHHh----cCCCEEEeCc
Confidence 4455556789999999986 57788888887764 12 1221 14777887777653 5788776655
No 438
>PRK12999 pyruvate carboxylase; Reviewed
Probab=27.91 E-value=1.7e+02 Score=37.63 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=68.7
Q ss_pred EEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCc---CHHHHHHHHHHHHhcCCCeE
Q psy13907 48 RVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLP---AQEEAMVLAELIKEYPGLKA 124 (698)
Q Consensus 48 ~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~---~l~Ea~aa~~a~~~~~~~Pv 124 (698)
.+-++|+..|..+.+ +++.| +. ++|.+.++.+.+.|+|.|.+=-+. ...++...++++|+..++|
T Consensus 669 ~~~~~i~ytg~~~d~---~~~~~----~~----~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ip- 736 (1146)
T PRK12999 669 IAEAAICYTGDILDP---ARAKY----DL----DYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLP- 736 (1146)
T ss_pred eEEEEEEEEecCCCC---CCCCC----CH----HHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCe-
Confidence 445667666654432 23322 22 588888888999999999886443 5678888888888744566
Q ss_pred EEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc------CCChhhhHHHHHHhHhh
Q psy13907 125 WISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN------CLAPHYVESLLTSAEVE 180 (698)
Q Consensus 125 ~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN------C~~p~~i~~~l~~~~~~ 180 (698)
+.|.+.++ .|..+..++.++. .|++.|=.- |+.--.++.++..|+..
T Consensus 737 -i~~H~Hnt----~Gla~an~laA~~----aGad~vD~av~glg~~tgn~~le~vv~~L~~~ 789 (1146)
T PRK12999 737 -IHLHTHDT----SGNGLATYLAAAE----AGVDIVDVAVASMSGLTSQPSLNSIVAALEGT 789 (1146)
T ss_pred -EEEEeCCC----CchHHHHHHHHHH----hCCCEEEecchhhcCCcCCHHHHHHHHHHHhc
Confidence 46666665 5777777777664 355544332 23323345555555443
No 439
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=27.85 E-value=3.2e+02 Score=30.49 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCCEEE-----E-ecCcCHHH-HHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh
Q psy13907 82 YHRPRIEALIQGGIDLLA-----I-ETLPAQEE-AMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIARDVYA 151 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il-----~-ETi~~l~E-a~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~ 151 (698)
.|.+++..+..+|+|+|= . ..+.-++| ++++.+++++. ++.+.+-++.+..+ . .+..+..+.
T Consensus 144 ~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-------~-~em~~ra~~ 215 (366)
T cd08148 144 YTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTAG-------T-FEIIERAER 215 (366)
T ss_pred HHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccCC-------H-HHHHHHHHH
Confidence 344556667778999852 2 23333444 55555555542 66676667766432 2 455554432
Q ss_pred hCCCCceEEEEcCCC
Q psy13907 152 KNPAQLVAVGVNCLA 166 (698)
Q Consensus 152 ~~~~~~~aIGiNC~~ 166 (698)
....++.++.+|...
T Consensus 216 ~~~~G~~~~mv~~~~ 230 (366)
T cd08148 216 ALELGANMLMVDVLT 230 (366)
T ss_pred HHHhCCCEEEEeccc
Confidence 234678888888854
No 440
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.84 E-value=1.6e+02 Score=30.75 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHH-hCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEE
Q psy13907 73 STTPQELIDYHRPRIEALI-QGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAW 125 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~-~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~ 125 (698)
.-|.+++.+...+.++.|. +.|||++++=. +..-+ .+++.+++..++|++
T Consensus 39 ~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaC--NTA~a-~~~~~l~~~~~iPii 89 (251)
T TIGR00067 39 EKSPEFILEYVLELLTFLKERHNIKLLVVAC--NTASA-LALEDLQRNFDFPVV 89 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCEEEEeC--chHHH-HHHHHHHHHCCCCEE
Confidence 3678999999999999999 99999998542 11111 235555554468865
No 441
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=27.75 E-value=1.3e+02 Score=32.82 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=49.5
Q ss_pred CeEEEEecCCc-CCCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----EE-ecCcCHHH-HHHHHHHHH
Q psy13907 46 HVRVAGSLGSY-GAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLL-----AI-ETLPAQEE-AMVLAELIK 117 (698)
Q Consensus 46 ~v~VAGSIGP~-g~~l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~i-----l~-ETi~~l~E-a~aa~~a~~ 117 (698)
+.++..-|=|- | ++.+++.+. +..+..+|+|+| +. ..+.-++| ++++.++++
T Consensus 14 RPL~~tiiKP~~G----------------lsp~~~a~~----~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~ 73 (309)
T PF00016_consen 14 RPLLGTIIKPKLG----------------LSPEELAEL----AYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVD 73 (309)
T ss_dssp S-EEEEEESSSST----------------S-HHHHHHH----HHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHH
T ss_pred ceEEccccCccee----------------ecccchhhH----HHhhhhcccceecccccccCcccccHhHhHHhhhhhhh
Confidence 45666677773 3 445555544 444556899997 23 24444544 555555555
Q ss_pred hc---CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 118 EY---PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 118 ~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
+. ++.+.+-.+.+. +.++.+..+..+.....++.++.+|-
T Consensus 74 ~a~~eTG~~~ly~~NiT-------~~~~~em~~ra~~a~~~G~~~vmv~~ 116 (309)
T PF00016_consen 74 RAEEETGEKKLYAANIT-------ADTPDEMIERAEYAKEAGANAVMVNV 116 (309)
T ss_dssp HHHHHHSS--EEEEEE--------SSSHHHHHHHHHHHHHHTGSEEEEEH
T ss_pred ccccccceecceecccc-------cccHHHHHHhhhhhhhhccchhhccc
Confidence 32 677777777764 33355555544322235778888875
No 442
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=27.69 E-value=84 Score=34.55 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCCEEE---EecCc------------CHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHH
Q psy13907 84 RPRIEALIQGGIDLLA---IETLP------------AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARD 148 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il---~ETi~------------~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~ 148 (698)
+++++.|.++|+|.+. +||+. +.++...+++.+++ .++++-.+|-+. .|++.++.++.
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~-~Gi~~~sg~i~G------lgEt~edrv~~ 222 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE-LGLKTNATMLYG------HIETPAHRVDH 222 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH-cCCCcceEEEee------CCCCHHHHHHH
Confidence 5668889999999774 88863 34555578888888 488887777553 37888888876
Q ss_pred HHhhCCCCceEEEEcCCCh
Q psy13907 149 VYAKNPAQLVAVGVNCLAP 167 (698)
Q Consensus 149 l~~~~~~~~~aIGiNC~~p 167 (698)
+......++.-.|+|...|
T Consensus 223 l~~Lr~l~~~~~~f~~fiP 241 (351)
T TIGR03700 223 MLRLRELQDETGGFQAFIP 241 (351)
T ss_pred HHHHHHhhHhhCCceEEEe
Confidence 6543345666667777664
No 443
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=27.67 E-value=1.1e+02 Score=32.48 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=34.2
Q ss_pred CCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCH
Q psy13907 60 LHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQ 106 (698)
Q Consensus 60 l~~gseY~g~y~~~~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l 106 (698)
..+|..|-+.+ .+.+....+.++.+.+|..-|+|.++||+|.+.
T Consensus 242 PS~G~~~G~a~---pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~ 285 (305)
T COG5309 242 PSDGRTYGSAV---PSVANQKIAVQEILNALRSCGYDVFVFEAFDDD 285 (305)
T ss_pred CCCCCccCCcC---CChhHHHHHHHHHHhhhhccCccEEEeeecccc
Confidence 34454555554 567888899999999998899999999999764
No 444
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=27.63 E-value=1.3e+02 Score=34.31 Aligned_cols=107 Identities=12% Similarity=0.185 Sum_probs=55.0
Q ss_pred ccCCC-CcHHHHHHHHHHhCC-CCceEEEEcCC---ChhhhHHHHHHhc---------CCCCEEEecCCCCCcCCCCccc
Q psy13907 473 HTCHG-DKFGLIARDVYAKNP-AQLVAVGVNCL---APHYVESLLTSAG---------RDVPLLCCPNSGETFDPGQRIW 538 (698)
Q Consensus 473 ~l~~G-~~l~~~v~~~~~~~~-~~~~~iGlNC~---~p~~~~~~l~~l~---------~~~pl~~yPNaG~~~d~~~g~~ 538 (698)
....| ..|.++++.+.+... +.+.+|--.|. --+++..+++++. .+.|++.-.-.|-.-....| |
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G-~ 144 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTG-Y 144 (454)
T ss_pred eEECcHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHH-H
Confidence 33444 356677777765432 44556666672 2356666666542 13444332222211000111 1
Q ss_pred ccCCChhhHHHHHHHHHH----cC-CeEEeecCCCchHHHHHHHhccccCCCCC
Q psy13907 539 MNKDSVPSVDTYVPRWLD----TG-VKYVGGCCRTNADDMKNVNQVPVKFSITP 587 (698)
Q Consensus 539 ~~~~~p~~~a~~~~~~~~----~G-~~iiGGCCGTtP~hI~al~~~v~~~~~~~ 587 (698)
+ ..+...++.|.. .+ +||+||+ -+|.+++.|++.++...-+.
T Consensus 145 --~---~a~~ali~~~~~~~~~~~~VNii~~~--~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 145 --D---EAVRSVVKTIAKKGAPSGKLNVFTGW--VNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred --H---HHHHHHHHHhcccCCCCCcEEEECCC--CChHHHHHHHHHHHHcCCCE
Confidence 0 112222333332 23 9999997 45999999999988765543
No 445
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.53 E-value=5.2e+02 Score=27.59 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred CcccchhhcccChHHHHHHHHHHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccC
Q psy13907 302 NPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIA 381 (698)
Q Consensus 302 ~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~ 381 (698)
.|.|.-+..-.+|+...+.-+.-.+.|+|.|..|-=....... ...+..++.++.+
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~----------------~~~~~i~~l~~~~-------- 171 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR----------------LTWDDLAWLRSQW-------- 171 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC----------------CCHHHHHHHHHhc--------
Q ss_pred CCCcEEEEecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe---------cccCCHHHHHHHHH
Q psy13907 382 SRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAI---------ETLPAQEEAMVLAE 452 (698)
Q Consensus 382 ~~~~~VAGsiGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDlll~---------ETi~~~~Eakaa~~ 452 (698)
+.++.|-+.+.+ +.++.+.+.|||.|.+ ...++..-+..+..
T Consensus 172 ~~pvivK~v~s~-----------------------------~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~ 222 (299)
T cd02809 172 KGPLILKGILTP-----------------------------EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVA 222 (299)
T ss_pred CCCEEEeecCCH-----------------------------HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHH
Q ss_pred HHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEE
Q psy13907 453 LIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 453 a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGl 500 (698)
.+.. +.||+.+.-+.+ -.++++++ ..+.++|++
T Consensus 223 ~~~~--~ipvia~GGI~~---------~~d~~kal----~lGAd~V~i 255 (299)
T cd02809 223 AVGG--RIEVLLDGGIRR---------GTDVLKAL----ALGADAVLI 255 (299)
T ss_pred HhcC--CCeEEEeCCCCC---------HHHHHHHH----HcCCCEEEE
No 446
>PRK06256 biotin synthase; Validated
Probab=27.35 E-value=2.7e+02 Score=30.18 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=7.9
Q ss_pred ChHHHHHHHHHHH
Q psy13907 196 KPIQLLSIELELA 208 (698)
Q Consensus 196 gP~~~~~~~~~l~ 208 (698)
.|.++++.+.-++
T Consensus 253 ~~~e~l~~ia~~R 265 (336)
T PRK06256 253 TPLECLKTIAIFR 265 (336)
T ss_pred CHHHHHHHHHHHH
Confidence 5667776666443
No 447
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=27.22 E-value=3.9e+02 Score=30.83 Aligned_cols=43 Identities=30% Similarity=0.506 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCEEEeccc-CCHHHHHHHHHHHHh-cCCCeEEE
Q psy13907 422 RPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKE-YPGLKAWI 464 (698)
Q Consensus 422 ~~qi~~L~~~GvDlll~ETi-~~~~Eakaa~~a~~~-~~~~Pv~i 464 (698)
.+.++.|+++|+|+|.+.+- .+.......+..+++ +++.|+++
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~ 274 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA 274 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE
Confidence 68899999999999988763 555555556666664 34788876
No 448
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.14 E-value=7.1e+02 Score=25.71 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEE--
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV-- 500 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGl-- 500 (698)
+|++...++|+++++-= .+. ..+++.+++ .++|++ +.-.|.+++..++. .+...|=+
T Consensus 82 e~a~~a~~aGA~FiVsP---~~~--~~v~~~~~~-~~i~~i-----------PG~~TpsEi~~A~~----~Ga~~vKlFP 140 (222)
T PRK07114 82 ATAALYIQLGANFIVTP---LFN--PDIAKVCNR-RKVPYS-----------PGCGSLSEIGYAEE----LGCEIVKLFP 140 (222)
T ss_pred HHHHHHHHcCCCEEECC---CCC--HHHHHHHHH-cCCCEe-----------CCCCCHHHHHHHHH----CCCCEEEECc
Confidence 77888899999999853 322 345566666 478875 44567788888763 12222222
Q ss_pred -cCCChhhhHHHHHHhcCCCC-EEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEee
Q psy13907 501 -NCLAPHYVESLLTSAGRDVP-LLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGG 564 (698)
Q Consensus 501 -NC~~p~~~~~~l~~l~~~~p-l~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGG 564 (698)
+..||. +++.|+...| +-+.|-.|... + .+-+.+|++.|+..+|.
T Consensus 141 A~~~G~~----~ikal~~p~p~i~~~ptGGV~~-----------~----~~n~~~yl~aGa~avg~ 187 (222)
T PRK07114 141 GSVYGPG----FVKAIKGPMPWTKIMPTGGVEP-----------T----EENLKKWFGAGVTCVGM 187 (222)
T ss_pred ccccCHH----HHHHHhccCCCCeEEeCCCCCc-----------c----hhcHHHHHhCCCEEEEE
Confidence 234554 4455542222 22344444221 0 11247799999988883
No 449
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=27.09 E-value=6.9e+02 Score=25.51 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=44.3
Q ss_pred HhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCC
Q psy13907 91 IQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL 165 (698)
Q Consensus 91 ~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~ 165 (698)
...++|++=+|-......++.+++.+++ .+..+++|+.-. .++.+-..+.+.+..+. ..|+|.+=+-+.
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H~f--~~tp~~~~l~~~~~~~~---~~gaDivKia~~ 157 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKK-GGTKIIMSYHDF--QKTPSWEEIVERLEKAL---SYGADIVKIAVM 157 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHH-CCCEEEEeccCC--CCCCCHHHHHHHHHHHH---HhCCCEEEEEec
Confidence 4578999999976665556666676666 578999998632 22333223444555443 356777777764
No 450
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.01 E-value=8.8e+02 Score=26.74 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHHHHc
Q psy13907 196 KPIQLLSIELELAAA 210 (698)
Q Consensus 196 gP~~~~~~~~~l~~~ 210 (698)
-|.++.++++.+.+.
T Consensus 169 ~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 169 DPFSTYELVRALRQA 183 (365)
T ss_pred CHHHHHHHHHHHHHh
Confidence 799999999998765
No 451
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.01 E-value=3.2e+02 Score=27.93 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
+|++..+++|+++++ -|.+.+ .+++++++ .++|++ + | -.++.++...+. .+++.|++
T Consensus 79 ~~~~~a~~aGA~Fiv---sP~~~~--~v~~~~~~-~~i~~i------P-G----~~T~~E~~~A~~----~Gad~vkl 135 (213)
T PRK06552 79 VTARLAILAGAQFIV---SPSFNR--ETAKICNL-YQIPYL------P-G----CMTVTEIVTALE----AGSEIVKL 135 (213)
T ss_pred HHHHHHHHcCCCEEE---CCCCCH--HHHHHHHH-cCCCEE------C-C----cCCHHHHHHHHH----cCCCEEEE
Confidence 366666778888887 455543 45566666 577776 1 1 234667776553 68899987
No 452
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=26.89 E-value=8e+02 Score=26.18 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccCC-----------HHHHHHHHHHHHhc---CCCeEEEEEEecCCCccCCC
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIETLPA-----------QEEAMVLAELIKEY---PGLKAWISFSCKDEKHTCHG 477 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ETi~~-----------~~Eakaa~~a~~~~---~~~Pv~iS~t~~~~g~l~~G 477 (698)
.+.++++..-+..++-+++.||= .+|...+ -...++++.++++. .++-+.+.+++... .+.
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt--~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~---~~~ 140 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVV--YAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRH---LSP 140 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCE--EEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCC---CCH
Confidence 46788888888888888899983 4553222 12344545555431 24444444443221 111
Q ss_pred CcHHHHHHHHHHhCCCCceEEEEcCC----ChhhhHHHHHHhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHH
Q psy13907 478 DKFGLIARDVYAKNPAQLVAVGVNCL----APHYVESLLTSAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVP 552 (698)
Q Consensus 478 ~~l~~~v~~~~~~~~~~~~~iGlNC~----~p~~~~~~l~~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~ 552 (698)
..+.+.++.+.......+.++++.|. .++.+.++++... ...++.++-.-. . .+... .
T Consensus 141 ~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~--~-----------~~~~~----~ 203 (325)
T cd01320 141 ESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEA--G-----------GPESV----R 203 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCC--C-----------CHHHH----H
Confidence 22334444443221234677888772 2355666665555 667776664321 0 11122 2
Q ss_pred HHHH-cCCeEEeecCCC--chHHHHHHHhc
Q psy13907 553 RWLD-TGVKYVGGCCRT--NADDMKNVNQV 579 (698)
Q Consensus 553 ~~~~-~G~~iiGGCCGT--tP~hI~al~~~ 579 (698)
+.++ .|+.-+|-|+.. .|+.|+.|++.
T Consensus 204 ~a~~~~g~~~i~H~~~l~~~~~~~~~l~~~ 233 (325)
T cd01320 204 DALDLLGAERIGHGIRAIEDPELVKRLAER 233 (325)
T ss_pred HHHHHcCCcccchhhccCccHHHHHHHHHc
Confidence 2333 687778888888 47788888764
No 453
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=26.85 E-value=7.6e+02 Score=26.83 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=63.8
Q ss_pred CC-CEEEecccCCHHHHHHH-HHHHHh-cCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC-CCh--
Q psy13907 432 GI-DLLAIETLPAQEEAMVL-AELIKE-YPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC-LAP-- 505 (698)
Q Consensus 432 Gv-Dlll~ETi~~~~Eakaa-~~a~~~-~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC-~~p-- 505 (698)
|+ |+..=|.+..-.=...- -..+.. -.+.|+.+++.- .+.+.+.+++..+.+ .+.+.|-||| +.-
T Consensus 24 g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g------~~p~~~~~aA~~~~~---~g~d~IDlN~GCP~~~ 94 (318)
T TIGR00742 24 SKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG------SDPNDLAKCAKIAEK---RGYDEINLNVGCPSDR 94 (318)
T ss_pred CCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc------CCHHHHHHHHHHHHh---CCCCEEEEECCCCHHH
Confidence 65 88877766543111000 011111 135788877742 234555566665533 4678899999 421
Q ss_pred --------------hhhHHHHHHhc--CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEE---eec
Q psy13907 506 --------------HYVESLLTSAG--RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYV---GGC 565 (698)
Q Consensus 506 --------------~~~~~~l~~l~--~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~ii---GGC 565 (698)
+.+..+++.+. .+.||++.--.|... ..+.+...++++...+.|+..| |+.
T Consensus 95 v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~---------~~~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 95 VQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP---------LDSYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred hCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC---------cchHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 12345555554 578998887765211 1223455667777778886644 664
No 454
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=26.82 E-value=5.9e+02 Score=26.30 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCCEEEEec--CcCHHHHHHHHHHHHhcCCCeEEEEEEEcCC-----CccCCCCCHHHHHHHHHhhCCCCc
Q psy13907 85 PRIEALIQGGIDLLAIET--LPAQEEAMVLAELIKEYPGLKAWISFSCKDE-----KHTCHGDKFGLIARDVYAKNPAQL 157 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ET--i~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~-----g~l~~G~~~~~~~~~l~~~~~~~~ 157 (698)
++++.+++.|+|-+.+=| +.+.+-++.+++.+.+ .+.+|+-+... |...+..++.+.++.+. ..++
T Consensus 88 edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~----~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~---~~G~ 160 (241)
T PRK14024 88 ESLEAALATGCARVNIGTAALENPEWCARVIAEHGD----RVAVGLDVRGHTLAARGWTRDGGDLWEVLERLD---SAGC 160 (241)
T ss_pred HHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhh----hEEEEEEEeccEeccCCeeecCccHHHHHHHHH---hcCC
Confidence 566777778999887654 4566666655554432 25666655332 22223445667776664 3677
Q ss_pred eEEEEcCCC
Q psy13907 158 VAVGVNCLA 166 (698)
Q Consensus 158 ~aIGiNC~~ 166 (698)
..+-++...
T Consensus 161 ~~iiv~~~~ 169 (241)
T PRK14024 161 SRYVVTDVT 169 (241)
T ss_pred CEEEEEeec
Confidence 777666644
No 455
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=26.64 E-value=1.6e+02 Score=34.13 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCEEEE--------ec-------CcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHH
Q psy13907 85 PRIEALIQGGIDLLAI--------ET-------LPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDV 149 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~--------ET-------i~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l 149 (698)
++++.+.++|+|+|.+ .| +|.+.-+..+.+++++ .++|+|. +|-..+ ..++++++
T Consensus 294 ~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~-~~v~vIa------dGGi~~---~~di~kAl 363 (495)
T PTZ00314 294 DQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARE-RGVPCIA------DGGIKN---SGDICKAL 363 (495)
T ss_pred HHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhh-cCCeEEe------cCCCCC---HHHHHHHH
Confidence 5777888899999864 12 3555555556666666 4688774 333333 34555555
Q ss_pred HhhCCCCceEEEE
Q psy13907 150 YAKNPAQLVAVGV 162 (698)
Q Consensus 150 ~~~~~~~~~aIGi 162 (698)
. .|+++|.+
T Consensus 364 a----~GA~~Vm~ 372 (495)
T PTZ00314 364 A----LGADCVML 372 (495)
T ss_pred H----cCCCEEEE
Confidence 3 56666554
No 456
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.57 E-value=7.6e+02 Score=25.83 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=34.7
Q ss_pred CChhhHHHHHHHHHHcCCeEEeecCCC----chHHHHHHHhccccCCC
Q psy13907 542 DSVPSVDTYVPRWLDTGVKYVGGCCRT----NADDMKNVNQVPVKFSI 585 (698)
Q Consensus 542 ~~p~~~a~~~~~~~~~G~~iiGGCCGT----tP~hI~al~~~v~~~~~ 585 (698)
.+++.+.+.++++.+.|+..|. .|-| +|+.+..+-+.+++.-+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~-l~DT~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTIN-IPDTVGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-ECCCCCCCCHHHHHHHHHHHHHhCC
Confidence 4688889999999999988875 4544 99999998888876544
No 457
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=26.56 E-value=8.5e+02 Score=27.61 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----EecccCCHHH--HHHHHHHHHh---cCCCeEEEEEEecCCCccCCCCcHH
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLL-----AIETLPAQEE--AMVLAELIKE---YPGLKAWISFSCKDEKHTCHGDKFG 481 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDll-----l~ETi~~~~E--akaa~~a~~~---~~~~Pv~iS~t~~~~g~l~~G~~l~ 481 (698)
++.+++. +++..+..+|+|++ +..--++.-+ ++++.+++++ .++...+-++.+++ . ..
T Consensus 156 lsp~~~a----~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-------~-~~ 223 (406)
T cd08207 156 LTPEETA----ALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITD-------D-ID 223 (406)
T ss_pred CCHHHHH----HHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-------C-HH
Confidence 4555544 55555777999995 4443333333 4566666663 35666677787654 2 33
Q ss_pred HHHHHHHHhCCCCceEEEEcC--CChhhhHHHHHHhcCCCCEEEecCCCCCcCC--CCcccccCCChhhHHHHHHHHHHc
Q psy13907 482 LIARDVYAKNPAQLVAVGVNC--LAPHYVESLLTSAGRDVPLLCCPNSGETFDP--GQRIWMNKDSVPSVDTYVPRWLDT 557 (698)
Q Consensus 482 ~~v~~~~~~~~~~~~~iGlNC--~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~--~~g~~~~~~~p~~~a~~~~~~~~~ 557 (698)
+..+...-....+..++.+|. .|...+..+-+. .+.||.++|+.-..+.. ..| .+ +.-+.+-|.-.
T Consensus 224 em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~--~~l~IhaHra~~ga~~r~p~~G-----is---~~vl~kl~RLa 293 (406)
T cd08207 224 EMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRH--SQLPIHGHRNGWGMLTRSPALG-----IS---FQAYQKLWRLA 293 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhc--CCceEEECCCcceecccCCCCC-----Cc---HHHHHHHHHHc
Confidence 443333211124445677777 455444444332 58999999987433211 112 12 22244555556
Q ss_pred CCe--EE---eecCCCchHHHHHHHhcccc
Q psy13907 558 GVK--YV---GGCCRTNADDMKNVNQVPVK 582 (698)
Q Consensus 558 G~~--ii---GGCCGTtP~hI~al~~~v~~ 582 (698)
|+. ++ ||==.-+.+...++++.+..
T Consensus 294 GaD~~~~~~~~Gkf~~~~~~~~~~~~~~~~ 323 (406)
T cd08207 294 GVDHLHVNGLASKFWESDDSVIESARACLT 323 (406)
T ss_pred CCCccccCCCcCCcCCCcHHHHHHHHHHhC
Confidence 633 34 44333455666666655543
No 458
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=26.35 E-value=92 Score=28.85 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHh
Q psy13907 74 TTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE 118 (698)
Q Consensus 74 ~s~eel~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~ 118 (698)
-+.+++......-++.+-+.|+|.|++|.+|+..+-.|+..-+++
T Consensus 78 ~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 78 GDPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp TSHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 456777777777888898889999999999987777777665554
No 459
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=26.28 E-value=8.4e+02 Score=26.25 Aligned_cols=101 Identities=16% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCCCEEEeccc----------------CCHHHHHHHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHHHH
Q psy13907 422 RPRIEALIQGGIDLLAIETL----------------PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIA 484 (698)
Q Consensus 422 ~~qi~~L~~~GvDlll~ETi----------------~~~~Eakaa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~~v 484 (698)
.+-++.+.++||-.+.+|-. -+..|...=+.++++. .+.+++|---. +.+ ..+..+.+++
T Consensus 93 ~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ART--Da~-~~~~g~deAI 169 (290)
T TIGR02321 93 HYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV--EAL-IAGLGQQEAV 169 (290)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEe--ccc-cccCCHHHHH
Confidence 45578889999999999974 2445555556666643 23456655533 222 2355678888
Q ss_pred HHHHHhCCCCceEEEEcC--CChhhhHHHHHHhcCCCCEEEec
Q psy13907 485 RDVYAKNPAQLVAVGVNC--LAPHYVESLLTSAGRDVPLLCCP 525 (698)
Q Consensus 485 ~~~~~~~~~~~~~iGlNC--~~p~~~~~~l~~l~~~~pl~~yP 525 (698)
+.......++.++|=+-+ ..++++..+.+.+....|+.+.|
T Consensus 170 ~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~~~~ 212 (290)
T TIGR02321 170 RRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVP 212 (290)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeEEec
Confidence 877544347788888875 57899999999887667887766
No 460
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=26.25 E-value=7.8e+02 Score=25.89 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=53.1
Q ss_pred HHHHHhCCCCEEEEe-cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCC
Q psy13907 87 IEALIQGGIDLLAIE-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL 165 (698)
Q Consensus 87 i~~l~~~GVD~il~E-Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~ 165 (698)
++...+.|+|.+-+- ...++++++.+++.+|+ .+..+.+++.. . .+.+.+...+.+......+++.|.+-=|
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~-~G~~v~~~~~~--a----~~~~~~~~~~~~~~~~~~g~~~i~l~DT 160 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKE-KGYEVFFNLMA--I----SGYSDEELLELLELVNEIKPDVFYIVDS 160 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHH-CCCeEEEEEEe--e----cCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 334456788974433 45678888888888887 36655554433 2 1245554444332222346665544333
Q ss_pred ChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 166 APHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 166 ~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
. .-+ -|+++.++++.++++
T Consensus 161 ~---------------G~~-----------~P~~v~~lv~~l~~~ 179 (266)
T cd07944 161 F---------------GSM-----------YPEDIKRIISLLRSN 179 (266)
T ss_pred C---------------CCC-----------CHHHHHHHHHHHHHh
Confidence 2 111 799999999998765
No 461
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=26.19 E-value=1.6e+02 Score=34.29 Aligned_cols=111 Identities=10% Similarity=0.221 Sum_probs=58.5
Q ss_pred ecCCCccCCC-CcHHHHHHHHHHhCCCCceEEEEcCC---ChhhhHHHHHHhc------CCCCEEEecCC-CCCcCCCCc
Q psy13907 468 CKDEKHTCHG-DKFGLIARDVYAKNPAQLVAVGVNCL---APHYVESLLTSAG------RDVPLLCCPNS-GETFDPGQR 536 (698)
Q Consensus 468 ~~~~g~l~~G-~~l~~~v~~~~~~~~~~~~~iGlNC~---~p~~~~~~l~~l~------~~~pl~~yPNa-G~~~d~~~g 536 (698)
++++.....| ..|.++++.+++...+.+.+|---|. --+++..+++.+. .+.||+ +-|. |-.-....|
T Consensus 117 m~E~~aVfGG~~~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~~~pVi-~v~TpgF~Gs~~~G 195 (515)
T TIGR01286 117 MTEDAAVFGGLKNMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPDDFPVP-FAHTPSFVGSHITG 195 (515)
T ss_pred CCCCceeeCcHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCCCCceE-EeeCCCCcccHHHH
Confidence 3344444445 45667777666544556666666672 2356666766654 134443 3332 100000122
Q ss_pred ccccCCChhhHHHHHHHHHH----------cC-CeEEeecCCCchHHHHHHHhccccCCCC
Q psy13907 537 IWMNKDSVPSVDTYVPRWLD----------TG-VKYVGGCCRTNADDMKNVNQVPVKFSIT 586 (698)
Q Consensus 537 ~~~~~~~p~~~a~~~~~~~~----------~G-~~iiGGCCGTtP~hI~al~~~v~~~~~~ 586 (698)
| +. .+...++.+.. .+ +|||||+-.+ |.+++.|++.++...-+
T Consensus 196 -y--d~---a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~ 249 (515)
T TIGR01286 196 -Y--DN---MFKGILEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVG 249 (515)
T ss_pred -H--HH---HHHHHHHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCC
Confidence 2 11 12222233321 13 9999998655 89999999999866544
No 462
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=26.04 E-value=2.4e+02 Score=27.33 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCcCH--------HHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHH
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIETLPAQ--------EEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIAR 147 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~ETi~~l--------~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~ 147 (698)
.+.+.+.++..++.+.+.||. +.+|+.+.. .++..+++.+.. |- +.++++.......|.++.+.++
T Consensus 107 ~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~l~~~~~----~~-~~i~~D~~h~~~~~~~~~~~i~ 180 (213)
T PF01261_consen 107 WERLAENLRELAEIAEEYGVR-IALENHPGPFSETPFSVEEIYRLLEEVDS----PN-VGICFDTGHLIMAGEDPDEAIK 180 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSSEESSHHHHHHHHHHHTT----TT-EEEEEEHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcce-EEEecccCccccchhhHHHHHHHHhhcCC----Cc-ceEEEehHHHHHcCCCHHHHHH
Confidence 455666666666666677887 666998865 566655555443 22 5566654444556778888887
Q ss_pred HHH
Q psy13907 148 DVY 150 (698)
Q Consensus 148 ~l~ 150 (698)
.+.
T Consensus 181 ~~~ 183 (213)
T PF01261_consen 181 RLA 183 (213)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 463
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=26.03 E-value=1.5e+02 Score=33.93 Aligned_cols=114 Identities=14% Similarity=0.251 Sum_probs=61.1
Q ss_pred EecCCCccCCCC-cHHHHHHHHHHhCCCCceEEEEcCC---ChhhhHHHHHHhc------CCCCEEEecCCCCCcCCCCc
Q psy13907 467 SCKDEKHTCHGD-KFGLIARDVYAKNPAQLVAVGVNCL---APHYVESLLTSAG------RDVPLLCCPNSGETFDPGQR 536 (698)
Q Consensus 467 t~~~~g~l~~G~-~l~~~v~~~~~~~~~~~~~iGlNC~---~p~~~~~~l~~l~------~~~pl~~yPNaG~~~d~~~g 536 (698)
.+.+......|+ .|.+++..+.+...+...+|--.|. --+++..+++++. ...|++.-...|-.-....|
T Consensus 66 ~l~E~d~VfGg~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G 145 (455)
T PRK14476 66 AMDEVTTILGGDENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDG 145 (455)
T ss_pred cCCccceEeCCHHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHH
Confidence 343333344443 4556666665443455566666672 3356777777665 14666665554421111122
Q ss_pred ccccCCChhhHHHHHHHHHH--------cC-CeEEeecCCCchHHHHHHHhccccCCCCC
Q psy13907 537 IWMNKDSVPSVDTYVPRWLD--------TG-VKYVGGCCRTNADDMKNVNQVPVKFSITP 587 (698)
Q Consensus 537 ~~~~~~~p~~~a~~~~~~~~--------~G-~~iiGGCCGTtP~hI~al~~~v~~~~~~~ 587 (698)
| + ..+...++.+.. .+ +|||||+= .+|.+++.|++.++...-+.
T Consensus 146 -~--~---~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~-~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 146 -W--A---AAVEAIVEALVPPASSTGRRPRQVNVLPGSH-LTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred -H--H---HHHHHHHHHhcccccCCCCCCCcEEEECCCC-CCcccHHHHHHHHHHcCCce
Confidence 2 1 111222222322 23 99999973 57899999999888665543
No 464
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=26.03 E-value=4.2e+02 Score=26.92 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=42.8
Q ss_pred EEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh-hCCCCceEEEEcCCC
Q psy13907 99 AIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYA-KNPAQLVAVGVNCLA 166 (698)
Q Consensus 99 l~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~-~~~~~~~aIGiNC~~ 166 (698)
+..|+.+.+.++++-+++++. ...+||+.+-+.. |--+.|.+..++.+.+.. ....++...|+-|-.
T Consensus 95 ~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~-Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH~ 163 (224)
T cd06824 95 WVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISG-EDSKSGVAPEDAAELAEAISQLPNLRLRGLMAIP 163 (224)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCC-CCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEeC
Confidence 457899999999888877663 1256677776542 334568887655443322 123567888888743
No 465
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.98 E-value=3.9e+02 Score=28.46 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCC-CCEEEE------------ecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHH
Q psy13907 82 YHRPRIEALIQGG-IDLLAI------------ETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARD 148 (698)
Q Consensus 82 ~~~~qi~~l~~~G-VD~il~------------ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~ 148 (698)
.|..-++.+.+.| +|.|=+ .-..+.+.+..+++++++..++|+++-++.. -+.+.+.++.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~-------~~~~~~~a~~ 177 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN-------VTDIVEIAKA 177 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC-------chhHHHHHHH
Confidence 3444555566677 888744 2233456677788888875578888877521 1234455554
Q ss_pred HHhhCCCCceEEEE-cCCC
Q psy13907 149 VYAKNPAQLVAVGV-NCLA 166 (698)
Q Consensus 149 l~~~~~~~~~aIGi-NC~~ 166 (698)
+. ..++++|-+ |++.
T Consensus 178 l~---~~G~d~i~~~nt~~ 193 (301)
T PRK07259 178 AE---EAGADGLSLINTLK 193 (301)
T ss_pred HH---HcCCCEEEEEcccc
Confidence 43 257777544 5554
No 466
>PLN02321 2-isopropylmalate synthase
Probab=25.97 E-value=8.6e+02 Score=29.25 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ecCc--CHHHHHHHHHHHHhc-CCC-eEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDLLAI-ETLP--AQEEAMVLAELIKEY-PGL-KAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~-ETi~--~l~Ea~aa~~a~~~~-~~~-Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
++-.+.++.+.+.|+|.|-+ -|+- ...|+...++.+++. ++. ++++++.|.++ .|.-+..++..+.
T Consensus 240 d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND----~GlAvANslaAv~ 310 (632)
T PLN02321 240 EFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQND----LGLSTANTLAGAH 310 (632)
T ss_pred HHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCC----CCHHHHHHHHHHH
Confidence 34555667777889998865 3543 567888889988864 333 48899999887 3666666666664
No 467
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=25.88 E-value=3.4e+02 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHH
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDV 487 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~ 487 (698)
+|++..+++|+|++++.. ++..+++.++..+++. ...+.+.. ..|-++..+.+..
T Consensus 199 eea~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~-~~~~~lea--------sGGI~~~ni~~ya 253 (277)
T TIGR01334 199 EQALTVLQASPDILQLDK-FTPQQLHHLHERLKFF-DHIPTLAA--------AGGINPENIADYI 253 (277)
T ss_pred HHHHHHHHcCcCEEEECC-CCHHHHHHHHHHHhcc-CCCEEEEE--------ECCCCHHHHHHHH
Confidence 556667789999999997 6789999999988742 22333343 2455665554443
No 468
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=25.87 E-value=4e+02 Score=28.01 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCCEEEEe-cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 85 PRIEALIQGGIDLLAIE-TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~E-Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
.|+....+.|+|.+++- +.-+..+++.+++.++++ ++-+++-+. +.+++-... ..+++.||+|
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l-Gl~~lvevh-----------~~~E~~~A~----~~gadiIgin 187 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDYAHSL-GLDVLVEVH-----------DEEELERAL----KLGAPLIGIN 187 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEeC-----------CHHHHHHHH----HcCCCEEEEC
Confidence 37888888999998887 444667889999999884 666665542 233443322 2589999998
No 469
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=25.83 E-value=7.2e+02 Score=25.34 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=56.5
Q ss_pred HhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcC--CChh
Q psy13907 429 IQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC--LAPH 506 (698)
Q Consensus 429 ~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC--~~p~ 506 (698)
...++|++=+|--.+-...+..+..+++ .+..+++|.. +-.++++-..+.+.++.+.+ .+.+.+=+-+ ..+.
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~-~~~kvI~S~H--~f~~tp~~~~l~~~~~~~~~---~gaDivKia~~a~~~~ 162 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKK-GGTKIIMSYH--DFQKTPSWEEIVERLEKALS---YGADIVKIAVMANSKE 162 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHH-CCCEEEEecc--CCCCCCCHHHHHHHHHHHHH---hCCCEEEEEeccCCHH
Confidence 5678999999977666666666666665 4678999985 32334444444455555533 3334444555 4566
Q ss_pred hhHHHHHHhc-----CCCCEEEecCC
Q psy13907 507 YVESLLTSAG-----RDVPLLCCPNS 527 (698)
Q Consensus 507 ~~~~~l~~l~-----~~~pl~~yPNa 527 (698)
+...+++... .+.|++++.-+
T Consensus 163 D~~~ll~~~~~~~~~~~~p~i~~~MG 188 (228)
T TIGR01093 163 DVLTLLEITNKVDEHADVPLITMSMG 188 (228)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 6555554432 45798888754
No 470
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=3.2e+02 Score=30.27 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=44.9
Q ss_pred HHHHHHhCCCCEEEEe-c---------CcCHHHHHHHHHHHHhcCCCeEEEEEEEc-CCCccCCCCCHHHHHHHHHhhCC
Q psy13907 86 RIEALIQGGIDLLAIE-T---------LPAQEEAMVLAELIKEYPGLKAWISFSCK-DEKHTCHGDKFGLIARDVYAKNP 154 (698)
Q Consensus 86 qi~~l~~~GVD~il~E-T---------i~~l~Ea~aa~~a~~~~~~~Pv~iSft~~-~~g~l~~G~~~~~~~~~l~~~~~ 154 (698)
.++..++.|+|.+.+= + -.+.+|++.+++.+.+ .++.+++.++.- -++.+ ..+.+.+..+. .
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~-~gkk~~V~~N~~~~~~~~---~~~~~~l~~l~---e 90 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHS-AGKKVYVAVNTLLHNDEL---ETLERYLDRLV---E 90 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHH-cCCeEEEEeccccccchh---hHHHHHHHHHH---H
Confidence 4555667899998875 3 1566789999999998 578777776532 11111 11344555443 3
Q ss_pred CCceEEEEc
Q psy13907 155 AQLVAVGVN 163 (698)
Q Consensus 155 ~~~~aIGiN 163 (698)
.++|+|=++
T Consensus 91 ~GvDaviv~ 99 (347)
T COG0826 91 LGVDAVIVA 99 (347)
T ss_pred cCCCEEEEc
Confidence 688887765
No 471
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.56 E-value=38 Score=35.80 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=30.7
Q ss_pred cEEE-EeecCCchhhhhhhhhcccccccccchhhhhhhhhhhhccccccCCCC
Q psy13907 622 EIVI-EQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIP 673 (698)
Q Consensus 622 ~~~v-Er~nv~~~s~~~~Lir~e~~~~~~~~~~~~~~iq~~qi~~g~~~~~~~ 673 (698)
++.| ||.|++ +..+.+.++..++..+.. ...-|+.+|...-++.
T Consensus 1 ~~~IGErin~~-~~~~~~~~~~~d~~~i~~-------~A~~~~~~GAdiIDVg 45 (261)
T PRK07535 1 MIIIGERINGT-RKSIAEAIEAKDAAFIQK-------LALKQAEAGADYLDVN 45 (261)
T ss_pred CcEEEeccchh-hHHHHHHHHcCCHHHHHH-------HHHHHHHCCCCEEEEC
Confidence 3678 999999 999999997555544444 4456777776655553
No 472
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=25.49 E-value=73 Score=32.87 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHhcchhhcccccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13907 323 DYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIAL 372 (698)
Q Consensus 323 ~yl~AGAdII~TNTf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~ 372 (698)
+-.+||||||..|-=..+--..+.+-++|.++..++.....+-+|-.+++
T Consensus 171 a~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd 220 (276)
T COG5564 171 AMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKD 220 (276)
T ss_pred HHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhc
Confidence 45689999998763222221222223567778888888888777777654
No 473
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.40 E-value=8.2e+02 Score=25.79 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=79.1
Q ss_pred ccCCHHHHHHHHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCChhhhHHHHHHhc---
Q psy13907 440 TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAG--- 516 (698)
Q Consensus 440 Ti~~~~Eakaa~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~p~~~~~~l~~l~--- 516 (698)
-.||+.....++.++.+. +.. +|-+-+.-+.=+.||..+.++-....+ |++..+.....+++++
T Consensus 21 G~P~~~~~~~~~~~l~~~-Gad-~iElGiPfSDP~aDGpvIq~a~~~AL~-----------~G~~~~~~~~~~~~~r~~~ 87 (258)
T PRK13111 21 GDPDLETSLEIIKALVEA-GAD-IIELGIPFSDPVADGPVIQAASLRALA-----------AGVTLADVFELVREIREKD 87 (258)
T ss_pred CCCCHHHHHHHHHHHHHC-CCC-EEEECCCCCCCcccCHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHhcC
Confidence 347888888877777652 222 223322223345788877765444322 4445666777777765
Q ss_pred CCCC--EEEecCC----CCCc-------CCCCcccccCCChhhHHHHHHHHHHcCCeEEeecCCCch-HHHHHHHhcccc
Q psy13907 517 RDVP--LLCCPNS----GETF-------DPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVGGCCRTNA-DDMKNVNQVPVK 582 (698)
Q Consensus 517 ~~~p--l~~yPNa----G~~~-------d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP-~hI~al~~~v~~ 582 (698)
.+.| ++.|-|- |... -..+|-..+|..+++..++.....+.|...|=-|--+|| +.|+.+++.-.+
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g 167 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG 167 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC
Confidence 3556 4556674 3110 112444456777777778888888889888887888775 668888777544
No 474
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.40 E-value=1.2e+03 Score=27.73 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHHHhCCCCEEEE-ecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcCC
Q psy13907 87 IEALIQGGIDLLAI-ETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL 165 (698)
Q Consensus 87 i~~l~~~GVD~il~-ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC~ 165 (698)
++...+.|+|.|-+ -.+++...++.+++++++ .++.+.+++++...- =.+++..++.++.....+++.|.+-=+
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~-~G~~v~~~i~~t~~p----~~~~~~~~~~~~~~~~~Gad~I~i~Dt 171 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKK-HGAHAQGTISYTTSP----VHTLETYLDLAEELLEMGVDSICIKDM 171 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHH-cCCEEEEEEEeccCC----CCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 33345689997644 466788899999999998 466655544332211 134444333332222356665544222
Q ss_pred ChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 166 APHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 166 ~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
. .-+ -|.++..+++.+++.
T Consensus 172 ~---------------G~~-----------~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 172 A---------------GIL-----------TPKAAYELVSALKKR 190 (582)
T ss_pred C---------------CCc-----------CHHHHHHHHHHHHHh
Confidence 2 112 799999999999765
No 475
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=25.37 E-value=1.1e+03 Score=27.25 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHHhcchhhcc---cccCChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEE
Q psy13907 313 NRQAVIDTHRDYVRAGCDIVTTN---TYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAG 389 (698)
Q Consensus 313 ~Pe~V~~iH~~yl~AGAdII~TN---Tf~as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAG 389 (698)
..+-...|-+..-++|.+.|+.- ||.+. .++ ++++ ..+..|+.+... .+..+.+-
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~----~~F--l~e~--------p~e~l~~l~~~~--------~~~~l~~l 80 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVC----VRF--LNEN--------PWERLKEIRKRL--------KNTKIQML 80 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhh----hcc--cCCC--------HHHHHHHHHHhC--------CCCEEEEE
Confidence 34444557778889999999882 33221 111 1122 122223332221 12345566
Q ss_pred ecCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-EecccCCHHHHHHHHHHHHhcCCCeEE--EEE
Q psy13907 390 SLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAW--ISF 466 (698)
Q Consensus 390 siGP~~~~l~~~~ey~g~y~~~~t~del~~~y~~qi~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~~~Pv~--iS~ 466 (698)
+.|+-- .| | ++ -.+++++.+-+ ...+.|+|.+ ++-..+++.+++.+++++++. +.-+. ++.
T Consensus 81 ~r~~N~---------~G-~-~~-~~dDvv~~fv~---~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~-G~~v~~~i~~ 144 (467)
T PRK14041 81 LRGQNL---------VG-Y-RH-YADDVVELFVK---KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKH-GAHVQGAISY 144 (467)
T ss_pred eccccc---------cC-c-cc-ccchhhHHHHH---HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHC-CCEEEEEEEe
Confidence 666621 12 1 11 13455555433 4567899976 555778899999999999874 44444 333
Q ss_pred EecCCCccCCCCcHH---HHHHHHHHhCCCCceEEEEcC----CChhhhHHHHHHhc--CCCCEEEecC
Q psy13907 467 SCKDEKHTCHGDKFG---LIARDVYAKNPAQLVAVGVNC----LAPHYVESLLTSAG--RDVPLLCCPN 526 (698)
Q Consensus 467 t~~~~g~l~~G~~l~---~~v~~~~~~~~~~~~~iGlNC----~~p~~~~~~l~~l~--~~~pl~~yPN 526 (698)
|+.. -.++. +.++.+.+ .+++.|.+-= ..|..+..+++.+. .+.||.+|-.
T Consensus 145 t~~p------~~t~e~~~~~a~~l~~---~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~H 204 (467)
T PRK14041 145 TVSP------VHTLEYYLEFARELVD---MGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSH 204 (467)
T ss_pred ccCC------CCCHHHHHHHHHHHHH---cCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEec
Confidence 3321 12343 44444433 4455554432 36899999999887 4578777654
No 476
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=25.26 E-value=8.8e+02 Score=26.16 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=73.9
Q ss_pred HHHHHHHHHhCCCCEEE-ecc---cCCHHHHH--------HHHHHHHhc-CCCeEEEEEEecCCCccCCCCcHHHHHHHH
Q psy13907 421 HRPRIEALIQGGIDLLA-IET---LPAQEEAM--------VLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDV 487 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll-~ET---i~~~~Eak--------aa~~a~~~~-~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~ 487 (698)
-.+.+++++++|+|++. ++. +-+..+-+ -++..+++. ...|++ -++ . |. ...++.+
T Consensus 182 ~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~il-h~c-g-------~~--~~~~~~~ 250 (338)
T TIGR01464 182 TIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVI-LFA-K-------GA--GHLLEEL 250 (338)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEe-C-------Cc--HHHHHHH
Confidence 34666777889999875 553 44444333 234455543 234542 332 1 21 1345555
Q ss_pred HHhCCCCceEEEEcCCChhhhHHHHHHhcCCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCC----eEEe
Q psy13907 488 YAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGV----KYVG 563 (698)
Q Consensus 488 ~~~~~~~~~~iGlNC~~p~~~~~~l~~l~~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~----~iiG 563 (698)
.+ .+..+++++-.. .+..+.+.+..+ +.+.-|-- |. .. ..++++..+.+++.++.+. -|+.
T Consensus 251 ~~---~~~~~~s~d~~~--dl~e~~~~~~~~--~~i~Gni~-p~------~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~ 315 (338)
T TIGR01464 251 AE---TGADVVGLDWTV--DLKEARKRVGPG--VAIQGNLD-PA------VL-YAPEEALEEKVEKILEAFGGKSRYIFN 315 (338)
T ss_pred Hh---cCCCEEEeCCCC--CHHHHHHHhCCC--eeEEeCCC-hH------Hh-cCCHHHHHHHHHHHHHHhccCCCceec
Confidence 43 345667776621 244444444322 33444441 11 11 2478889999999887643 3554
Q ss_pred -ecC---CCchHHHHHHHhccc
Q psy13907 564 -GCC---RTNADDMKNVNQVPV 581 (698)
Q Consensus 564 -GCC---GTtP~hI~al~~~v~ 581 (698)
||. +|-++.|+|+.++++
T Consensus 316 ~Gc~i~~~tp~eni~a~v~a~~ 337 (338)
T TIGR01464 316 LGHGILPDTPPENVKALVEYVH 337 (338)
T ss_pred CCCcCCCCcCHHHHHHHHHHHh
Confidence 453 577899999988875
No 477
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=25.17 E-value=6e+02 Score=29.88 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCEEEecccC--CHH---------HHHHHHHHHHhcCCCeEEEEEEec
Q psy13907 422 RPRIEALIQGGIDLLAIETLP--AQE---------EAMVLAELIKEYPGLKAWISFSCK 469 (698)
Q Consensus 422 ~~qi~~L~~~GvDlll~ETi~--~~~---------Eakaa~~a~~~~~~~Pv~iS~t~~ 469 (698)
.++++.+++.|+|-+.+-|.- +.+ +-..+-++++++.+.-|++|+-.+
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k 395 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPR 395 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecC
Confidence 478888999999999998732 211 134566667777666688888764
No 478
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=25.16 E-value=9.1e+02 Score=26.26 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhC-CCCEEE-EecCcC-------HHH--------HHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCC
Q psy13907 79 LIDYHRPRIEALIQG-GIDLLA-IETLPA-------QEE--------AMVLAELIKEYPGLKAWISFSCKDEKHTCHGDK 141 (698)
Q Consensus 79 l~~~~~~qi~~l~~~-GVD~il-~ETi~~-------l~E--------a~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~ 141 (698)
+.++..+.++.++++ |+|+|. ++++.+ .++ .+.+++.+++..+.|++ -+++ |..
T Consensus 153 ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~pii-lH~c--------G~~ 223 (321)
T cd03309 153 LTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIV-HHSC--------GAA 223 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceE-EEeC--------CCc
Confidence 333444445555566 999988 475543 222 35566666663355655 3444 221
Q ss_pred HHHHHHHHHhhCCCCceEEEEcCCChhhhHHHHHHhHhhcccc--cccccccccCCC-hHHHHHHHHHHHHc
Q psy13907 142 FGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSL--ELPVNNTLISRK-PIQLLSIELELAAA 210 (698)
Q Consensus 142 ~~~~~~~l~~~~~~~~~aIGiNC~~p~~i~~~l~~~~~~~~~~--~~p~~~~~~~~g-P~~~~~~~~~l~~~ 210 (698)
...+..+.+ .+++++++-... ..+..+.+.+.... .+ .++.. -....| |+++.+.++++.+.
T Consensus 224 -~~~l~~~~e---~g~dvl~~d~~~-~dl~eak~~~g~k~-~l~GNlDp~-~L~~~~t~E~i~~~v~~~l~~ 288 (321)
T cd03309 224 -ASLVPSMAE---MGVDSWNVVMTA-NNTAELRRLLGDKV-VLAGAIDDV-ALDTATWPEEDARGVAKAAAE 288 (321)
T ss_pred -HHHHHHHHH---cCCCEEEecCCC-CCHHHHHHHhCCCe-EEEcCCChH-HhcCCCCHHHHHHHHHHHHHH
Confidence 123343322 466666543322 13344444442211 01 11111 122334 79899999988775
No 479
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=25.14 E-value=1.1e+03 Score=27.22 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHHHhCCCCEE-EEecCcCHHHHHHHHHHHHhcCCCeEEE--EEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEc
Q psy13907 87 IEALIQGGIDLL-AIETLPAQEEAMVLAELIKEYPGLKAWI--SFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 163 (698)
Q Consensus 87 i~~l~~~GVD~i-l~ETi~~l~Ea~aa~~a~~~~~~~Pv~i--Sft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiN 163 (698)
++...+.|+|.| +|-.++++..++..++++++ .++.+.. ++++.+ -.+++..++.++.....|++.|.+-
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~-~G~~v~~~i~~t~~p------~~t~e~~~~~a~~l~~~Gad~I~i~ 173 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKK-HGAHVQGAISYTVSP------VHTLEYYLEFARELVDMGVDSICIK 173 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHH-CCCEEEEEEEeccCC------CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 333457899975 44567788889999999988 4665553 333321 1234433333222123566655443
Q ss_pred CCChhhhHHHHHHhHhhcccccccccccccCCChHHHHHHHHHHHHc
Q psy13907 164 CLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELELAAA 210 (698)
Q Consensus 164 C~~p~~i~~~l~~~~~~~~~~~~p~~~~~~~~gP~~~~~~~~~l~~~ 210 (698)
=+. .-+ -|.++.++++.+++.
T Consensus 174 Dt~---------------G~l-----------~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 174 DMA---------------GLL-----------TPKRAYELVKALKKK 194 (467)
T ss_pred Ccc---------------CCc-----------CHHHHHHHHHHHHHh
Confidence 222 112 799999999999875
No 480
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=24.92 E-value=6.6e+02 Score=29.74 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=65.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCCCCCCCCCccCCCCCCCCHHHHHHHHHHHH
Q psy13907 8 QHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRI 87 (698)
Q Consensus 8 ~~~gl~~~~~~eln~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~~l~~gseY~g~y~~~~s~eel~~~~~~qi 87 (698)
+.++.+.+++.+....++++|++.... +.+.+|.--. -+|++.-....+.+-+.+ .+
T Consensus 134 ~~l~~s~ee~l~~~~~~v~~ak~~~~~--------------~~~~~~~~~~-----v~f~~Ed~~r~d~~~l~~----~~ 190 (564)
T TIGR00970 134 VVFRASRAEVQAIATDGTKLVRKCTKQ--------------AAKYPGTQWR-----FEYSPESFSDTELEFAKE----VC 190 (564)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhccc--------------ccccccceEE-----EEEecccCCCCCHHHHHH----HH
Confidence 336888888888888888888876421 1222222100 023333111233444444 45
Q ss_pred HHHHhCCCC------EE-EEecCc--CHHHHHHHHHHHHhc-CC-CeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 88 EALIQGGID------LL-AIETLP--AQEEAMVLAELIKEY-PG-LKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 88 ~~l~~~GVD------~i-l~ETi~--~l~Ea~aa~~a~~~~-~~-~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
+.+.+.|++ .| +.-|+- ...++...++.+++. ++ ..+.+++.|.++ -|.-+..++..+.
T Consensus 191 ~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND----~GlAvANslaAv~ 260 (564)
T TIGR00970 191 EAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHND----RGTAVAAAELGFL 260 (564)
T ss_pred HHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCC----CChHHHHHHHHHH
Confidence 555666653 33 345544 456677777777753 22 246789999988 4666777776664
No 481
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.83 E-value=8e+02 Score=25.52 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCEEEEecCcCHHHHHHH-HHHHHhcCCCeEE--EEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 86 RIEALIQGGIDLLAIETLPAQEEAMVL-AELIKEYPGLKAW--ISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 86 qi~~l~~~GVD~il~ETi~~l~Ea~aa-~~a~~~~~~~Pv~--iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
.+++|..-|+.=|.+=| |..+++-.. .+.+.+ .+.-|. .+|-+.++.. ..-.+.+.+.+.+.+....++|+|=+
T Consensus 111 ~~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~-~G~eV~~~~~~~~~~~~~-ia~i~p~~i~~~~~~~~~~~aDAifi 187 (239)
T TIGR02990 111 AVDGLAALGVRRISLLT-PYTPETSRPMAQYFAV-RGFEIVNFTCLGLTDDRE-MARISPDCIVEAALAAFDPDADALFL 187 (239)
T ss_pred HHHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHh-CCcEEeeeeccCCCCCce-eeecCHHHHHHHHHHhcCCCCCEEEE
Confidence 35566666888898888 666665444 344444 455554 3444444433 23344445444443334568999999
Q ss_pred cCCC
Q psy13907 163 NCLA 166 (698)
Q Consensus 163 NC~~ 166 (698)
-|+.
T Consensus 188 sCTn 191 (239)
T TIGR02990 188 SCTA 191 (239)
T ss_pred eCCC
Confidence 9998
No 482
>PRK08445 hypothetical protein; Provisional
Probab=24.74 E-value=2.9e+02 Score=30.43 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCCEE---EEecCcC------------HHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHH
Q psy13907 83 HRPRIEALIQGGIDLL---AIETLPA------------QEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIAR 147 (698)
Q Consensus 83 ~~~qi~~l~~~GVD~i---l~ETi~~------------l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~ 147 (698)
+.++++.|.++|+|-+ -+||..+ .++-..+++.+++ .++++..+|-+. .|++.++.++
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~-~Gi~~~sg~i~G------~~Et~edr~~ 215 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL-IGMKSTATMMFG------TVENDEEIIE 215 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCeeeeEEEec------CCCCHHHHHH
Confidence 3789999999999954 4896653 3444566677777 589999888764 3677777776
Q ss_pred HHHhhCCCCceEEEEcCCC
Q psy13907 148 DVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 148 ~l~~~~~~~~~aIGiNC~~ 166 (698)
.+......+....|++...
T Consensus 216 ~l~~lreLq~~~~g~~~fi 234 (348)
T PRK08445 216 HWERIRDLQDETGGFRAFI 234 (348)
T ss_pred HHHHHHHHHHHhCCeeEEe
Confidence 5533223455556666643
No 483
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=24.63 E-value=92 Score=28.86 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHh
Q psy13907 412 TTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKE 456 (698)
Q Consensus 412 ~t~del~~~y~~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~ 456 (698)
-+.++........++.|-+.|+|.|++|.+++.....|+..=+++
T Consensus 78 ~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 78 GDPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp TSHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 467888888889999999999999999999988777777665554
No 484
>KOG1268|consensus
Probab=24.57 E-value=1.9e+02 Score=33.59 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=57.4
Q ss_pred CEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEec----------CCCc---cCCCCcHHHHHHHHHHhCCCCceEEEE
Q psy13907 434 DLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCK----------DEKH---TCHGDKFGLIARDVYAKNPAQLVAVGV 500 (698)
Q Consensus 434 Dlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~----------~~g~---l~~G~~l~~~v~~~~~~~~~~~~~iGl 500 (698)
-++++-.-.+..-+.|....++++.++||+|-+..+ |+.. -.||+|.. ++-++.=-...+.+.||+
T Consensus 357 Rli~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDflDR~~pifRdDvc~FvSqSGETaD-tllaL~Yc~~~gAl~vGv 435 (670)
T KOG1268|consen 357 RLIMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETAD-TLLALRYCKERGALTVGV 435 (670)
T ss_pred ccEEEEecchHHHHHHHHHHHHHHhcCCeeeehhhhhHhcCCCceeccEEEEEecCCchHH-HHHHHHHHHhcCceEEEe
Confidence 356666777888889999999999999999877532 1111 15888764 333331101257788886
Q ss_pred -cCCChhhhHHHHHHhcCCCCEEEecCCCCC
Q psy13907 501 -NCLAPHYVESLLTSAGRDVPLLCCPNSGET 530 (698)
Q Consensus 501 -NC~~p~~~~~~l~~l~~~~pl~~yPNaG~~ 530 (698)
||+|..- +....-+++-|||..
T Consensus 436 tNtvGSsI--------sR~thCGvHiNaGpE 458 (670)
T KOG1268|consen 436 TNTVGSSI--------SRETHCGVHINAGPE 458 (670)
T ss_pred ecccCccc--------ccccccceeccCCCc
Confidence 8877532 234667899999954
No 485
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.53 E-value=1.7e+02 Score=30.56 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhccCCccCCCCeEEEEecCCcCC
Q psy13907 22 RDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGA 58 (698)
Q Consensus 22 ~~Av~lAreA~~~~~~~~~~~~~~~v~VAGSIGP~g~ 58 (698)
+.++++.+.|++.+ .+..+.|++=|.|.
T Consensus 205 eE~i~v~~~AR~~f---------~~pv~iGCmrP~Ge 232 (275)
T COG1856 205 EEAIKVVKYARKKF---------PNPVSIGCMRPRGE 232 (275)
T ss_pred HHHHHHHHHHHHhC---------CCCeeEeecCcCch
Confidence 34566666666654 23689999999876
No 486
>PLN02321 2-isopropylmalate synthase
Probab=24.07 E-value=1.3e+03 Score=27.74 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred hcchhhccccc-CChhchHhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcEEEEecCCcCCCCCCCCCCCC
Q psy13907 328 GCDIVTTNTYQ-ASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRG 406 (698)
Q Consensus 328 GAdII~TNTf~-as~~~l~~~~g~~~~~~~eln~~av~lAr~A~~~~~~~~~~~~~~~~~VAGsiGP~~~~l~~~~ey~g 406 (698)
|++-...++|- ++...+...++++.+++.+....++++||+.-. . .|. .+|- +.+
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~------------~-~v~--fs~E---------Da~ 235 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGC------------E-DVE--FSPE---------DAG 235 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC------------c-eEE--Eecc---------cCC
Confidence 44434455554 455555555688888888888888877776421 1 122 2231 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEe-ccc--CCHHHHHHHHHHHHhc-CCC-eEEEEEEecC
Q psy13907 407 DYIDSTTPQELIDYHRPRIEALIQGGIDLLAI-ETL--PAQEEAMVLAELIKEY-PGL-KAWISFSCKD 470 (698)
Q Consensus 407 ~y~~~~t~del~~~y~~qi~~L~~~GvDlll~-ETi--~~~~Eakaa~~a~~~~-~~~-Pv~iS~t~~~ 470 (698)
..+. ++..+.++.+.+.|+|.|-+ -|+ ....+....+..+++. +.. .+.+++-|.+
T Consensus 236 ----rtd~----d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HN 296 (632)
T PLN02321 236 ----RSDP----EFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQN 296 (632)
T ss_pred ----CCCH----HHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 2344 44456666778899998854 343 3456888888888753 333 4788999876
No 487
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=24.05 E-value=3.1e+02 Score=27.11 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEE
Q psy13907 85 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGV 162 (698)
Q Consensus 85 ~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGi 162 (698)
+++....+.|+|++.+ +|.-......++.++.. +++|++++- |-+.+.+.+.+. .++++|++
T Consensus 108 ~e~~~A~~~Gad~i~~--~p~~~~g~~~~~~l~~~~~~~p~~a~G----------GI~~~n~~~~~~----~G~~~v~v 170 (190)
T cd00452 108 TEIMQALELGADIVKL--FPAEAVGPAYIKALKGPFPQVRFMPTG----------GVSLDNAAEWLA----AGVVAVGG 170 (190)
T ss_pred HHHHHHHHCCCCEEEE--cCCcccCHHHHHHHHhhCCCCeEEEeC----------CCCHHHHHHHHH----CCCEEEEE
No 488
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=23.95 E-value=4.1e+02 Score=30.89 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCEEEEecC-cCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEE
Q psy13907 84 RPRIEALIQGGIDLLAIETL-PAQEEAMVLAELIKEY-PGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAV 160 (698)
Q Consensus 84 ~~qi~~l~~~GVD~il~ETi-~~l~Ea~aa~~a~~~~-~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aI 160 (698)
.+++++|+++|+|+|.+-+- .+...+...++.+++. +++|+++ | +..+.+++...+. .|+|+|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-------G---~V~t~~~a~~~~~----aGad~I 307 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-------G---NVVTADQAKNLID----AGADGL 307 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-------C---CcCCHHHHHHHHH----cCCCEE
Confidence 67899999999999998652 1223334456666653 5678876 2 2344555554432 577776
No 489
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.79 E-value=9.4e+02 Score=29.46 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=53.2
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEEecC----------c-----------C----HHHHHHHHHHHHhc--CCC
Q psy13907 73 STTPQE---LIDYHRPRIEALIQGGIDLLAIETL----------P-----------A----QEEAMVLAELIKEY--PGL 122 (698)
Q Consensus 73 ~~s~ee---l~~~~~~qi~~l~~~GVD~il~ETi----------~-----------~----l~Ea~aa~~a~~~~--~~~ 122 (698)
.+|.+| +.+.|..-++...++|.|.|=+=-= | + ..=+..+++++++. .+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 466555 5556666666667899999854211 1 1 23355666677764 346
Q ss_pred eEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCCceEEEEcC
Q psy13907 123 KAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164 (698)
Q Consensus 123 Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~~~aIGiNC 164 (698)
|+.+-++..+ ....|.++++.+..++.....++|.|-|-.
T Consensus 620 ~v~~ri~~~~--~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 620 PMSVRISAHD--WVEGGNTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred eeEEEEcccc--ccCCCCCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 7777776532 334577787766544333345778776654
No 490
>PLN02389 biotin synthase
Probab=23.77 E-value=4.4e+02 Score=29.50 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=4.5
Q ss_pred ChHHHHHHHH
Q psy13907 196 KPIQLLSIEL 205 (698)
Q Consensus 196 gP~~~~~~~~ 205 (698)
.|.+.++.+.
T Consensus 281 s~~e~lr~iA 290 (379)
T PLN02389 281 EIWEMVRMIA 290 (379)
T ss_pred CHHHHHHHHH
Confidence 3444444444
No 491
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=23.77 E-value=1.9e+02 Score=25.74 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCEEEecc--cCCHHHHHHHHHHHHhcCCCeEEEE
Q psy13907 421 HRPRIEALIQGGIDLLAIET--LPAQEEAMVLAELIKEYPGLKAWIS 465 (698)
Q Consensus 421 y~~qi~~L~~~GvDlll~ET--i~~~~Eakaa~~a~~~~~~~Pv~iS 465 (698)
|.+.+..+++.|. -+++|- ..++.|++.+++++++. +.+++|.
T Consensus 75 h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~-~~~~~Vg 119 (120)
T PF01408_consen 75 HAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEK-GVKVMVG 119 (120)
T ss_dssp HHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHH-TSCEEEE
T ss_pred hHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHh-CCEEEEe
Confidence 6677777777777 444463 45677777777777763 5556654
No 492
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=23.75 E-value=1.8e+02 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEE
Q psy13907 82 YHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISF 128 (698)
Q Consensus 82 ~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSf 128 (698)
....-.+.|.+.|+|+|++..|.-..+.|..++. ..++||+.|=
T Consensus 166 ~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~---~~g~PVlLsr 209 (221)
T PF07302_consen 166 ELAAAARELAEQGADLIVLDCMGYTQEMRDIVQR---ALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHH---HhCCCEEeHH
Confidence 3445567788899999999999999998877643 3689998753
No 493
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=23.67 E-value=1.7e+02 Score=35.82 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecCcCHHHHHHH---HHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHhhCCCC
Q psy13907 80 IDYHRPRIEALIQGGIDLLAIETLPAQEEAMVL---AELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQ 156 (698)
Q Consensus 80 ~~~~~~qi~~l~~~GVD~il~ETi~~l~Ea~aa---~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~~~~~~ 156 (698)
.++|...++.+.++|+-+|.+--|.-+.-=.|+ +.++|+..++||-+.. .+. +|..+.....++. .|
T Consensus 693 L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHT--HDT----sG~~~at~~aA~~----AG 762 (1149)
T COG1038 693 LDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHT--HDT----SGNGVATYLAAVE----AG 762 (1149)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhcCCceEEec--cCC----CccHHHHHHHHHH----cC
Confidence 379999999999999999999998877655555 4455554688976543 222 4666655555443 45
Q ss_pred ceEE
Q psy13907 157 LVAV 160 (698)
Q Consensus 157 ~~aI 160 (698)
+|+|
T Consensus 763 vDiv 766 (1149)
T COG1038 763 VDIV 766 (1149)
T ss_pred Cchh
Confidence 5544
No 494
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=23.63 E-value=1.4e+02 Score=32.00 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=34.1
Q ss_pred HhCCCCEEEEecCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHHh-hCCCCceEEEEcCCC
Q psy13907 91 IQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYA-KNPAQLVAVGVNCLA 166 (698)
Q Consensus 91 ~~~GVD~il~ETi~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~~-~~~~~~~aIGiNC~~ 166 (698)
.+..+|++.+=|-+++ -...+.++++. +++|+| +.. -..+++++-+-+.. .+..-...||.|--.
T Consensus 64 ~~~~iD~V~Iatp~~~-H~e~~~~AL~a--GkhVl~----EKP----la~t~~ea~~l~~~a~~~~~~l~v~~~~Rf 129 (342)
T COG0673 64 ADPDIDAVYIATPNAL-HAELALAALEA--GKHVLC----EKP----LALTLEEAEELVELARKAGVKLMVGFNRRF 129 (342)
T ss_pred cCCCCCEEEEcCCChh-hHHHHHHHHhc--CCEEEE----cCC----CCCCHHHHHHHHHHHHHcCCceeeehhhhc
Confidence 3345888888774444 45566666664 566553 211 13344444322211 122346778888866
No 495
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=23.52 E-value=6.6e+02 Score=25.37 Aligned_cols=45 Identities=24% Similarity=0.505 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCEEEecccCCHHHHHHHHHHHHhcCCCeEEEEEEec
Q psy13907 423 PRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCK 469 (698)
Q Consensus 423 ~qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~~~Pv~iS~t~~ 469 (698)
++++.+.+.|+|.+++-|..- .+...+.++.+++.+ .+++|+.+.
T Consensus 87 ed~~~~~~~Ga~~vilg~~~l-~~~~~l~ei~~~~~~-~i~vsid~k 131 (233)
T PRK00748 87 ETVEALLDAGVSRVIIGTAAV-KNPELVKEACKKFPG-KIVVGLDAR 131 (233)
T ss_pred HHHHHHHHcCCCEEEECchHH-hCHHHHHHHHHHhCC-Cceeeeecc
Confidence 456666678999988765331 122233444454422 366677664
No 496
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.40 E-value=1.4e+02 Score=33.85 Aligned_cols=101 Identities=11% Similarity=0.191 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHhCCCCceEEEEcCC---ChhhhHHHHHHhc--C----CCCEEEecCCCCCcCCCCcccccCCChhhHH
Q psy13907 478 DKFGLIARDVYAKNPAQLVAVGVNCL---APHYVESLLTSAG--R----DVPLLCCPNSGETFDPGQRIWMNKDSVPSVD 548 (698)
Q Consensus 478 ~~l~~~v~~~~~~~~~~~~~iGlNC~---~p~~~~~~l~~l~--~----~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a 548 (698)
+.|.+++..+.+...+...+|--.|. --+++..+++++. . +.|++...-.|-.-+...| | + ..+.
T Consensus 71 ~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G-~--~---~a~~ 144 (435)
T cd01974 71 NNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITG-Y--D---NMVK 144 (435)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHH-H--H---HHHH
Confidence 45556666665544455566666662 2355666666554 1 4555444333211111112 1 1 1122
Q ss_pred HHHHHHHH-------c-CCeEEeecCCCchHH-HHHHHhccccCCCC
Q psy13907 549 TYVPRWLD-------T-GVKYVGGCCRTNADD-MKNVNQVPVKFSIT 586 (698)
Q Consensus 549 ~~~~~~~~-------~-G~~iiGGCCGTtP~h-I~al~~~v~~~~~~ 586 (698)
..++.+.. . .+||+||.. +|.. ++.|++.+++..-+
T Consensus 145 al~~~l~~~~~~~~~~~~VNli~~~~--~~~d~~~el~~lL~~~Gl~ 189 (435)
T cd01974 145 GILTHLTEGSGGAGKNGKLNIIPGFD--TYAGNMREIKRLLELMGVD 189 (435)
T ss_pred HHHHHHhcccCCCCCCCeEEEECCCC--CCcchHHHHHHHHHHcCCC
Confidence 22223322 1 399999876 3333 77787777765433
No 497
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=23.33 E-value=5.1e+02 Score=28.22 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe----cCc-CHHHHHHHHHHHHhc---CCCeEEEEEEEcCCCccCCCCCHHHHHH
Q psy13907 76 PQELIDYHRPRIEALIQGGIDLLAIE----TLP-AQEEAMVLAELIKEY---PGLKAWISFSCKDEKHTCHGDKFGLIAR 147 (698)
Q Consensus 76 ~eel~~~~~~qi~~l~~~GVD~il~E----Ti~-~l~Ea~aa~~a~~~~---~~~Pv~iSft~~~~g~l~~G~~~~~~~~ 147 (698)
.+++...|.+.++.|.+.||+.+-++ +.. +-.+..++..+-+++ .+.+++++..|.+. .+.+.
T Consensus 176 l~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~~~~~~~ill~TYFg~~---------~~~l~ 246 (310)
T PF08267_consen 176 LDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELAAAPRPKILLATYFGDL---------GDNLE 246 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHCCTTTSEEEEE--SS-----------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHhcCCCCcEEEECCCCch---------hhHHH
Confidence 46788899999999999999998665 111 233444444444443 56899999888542 22333
Q ss_pred HHHhhCCCCceEEEEcCCC
Q psy13907 148 DVYAKNPAQLVAVGVNCLA 166 (698)
Q Consensus 148 ~l~~~~~~~~~aIGiNC~~ 166 (698)
.+ ....+++||+.++.
T Consensus 247 ~l---~~lpv~~l~lDlv~ 262 (310)
T PF08267_consen 247 LL---LDLPVDGLHLDLVR 262 (310)
T ss_dssp HH---TTSSESEEEEETTT
T ss_pred HH---hcCCCcEEEeeccC
Confidence 33 24789999999998
No 498
>PRK00915 2-isopropylmalate synthase; Validated
Probab=23.31 E-value=9e+02 Score=28.15 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ecCc--CHHHHHHHHHHHHhcCCCe----EEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 81 DYHRPRIEALIQGGIDLLAI-ETLP--AQEEAMVLAELIKEYPGLK----AWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 81 ~~~~~qi~~l~~~GVD~il~-ETi~--~l~Ea~aa~~a~~~~~~~P----v~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
++..+.++.+.+.|+|.|.+ -|+- ...++...++.+++. .| +.++|.+.++ .|.-+..++..+.
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~--~~~~~~v~l~~H~HND----~GlAvANslaAv~ 219 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRER--VPNIDKAIISVHCHND----LGLAVANSLAAVE 219 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHh--CCCcccceEEEEecCC----CCHHHHHHHHHHH
Confidence 45666677777889998765 3543 577888888888863 33 6789999887 4666667776664
No 499
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.22 E-value=9.4e+02 Score=25.72 Aligned_cols=204 Identities=16% Similarity=0.232 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEe--cCcCHHHHHHHHHHHHhcCCCeEEEEEEEcCCCccCCCCCHHHHHHHHH
Q psy13907 73 STTPQELIDYHRPRIEALIQGGIDLLAIE--TLPAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVY 150 (698)
Q Consensus 73 ~~s~eel~~~~~~qi~~l~~~GVD~il~E--Ti~~l~Ea~aa~~a~~~~~~~Pv~iSft~~~~g~l~~G~~~~~~~~~l~ 150 (698)
.-|.++++++-.+.++.|.+.+++++++= |.+ -.+++.+|+.-+.||+=-+ .| +..+++.-+
T Consensus 46 ~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTAS-----a~al~~LR~~~~iPVvGvi---------Pa--ik~A~~~t~ 109 (269)
T COG0796 46 EKSEEEIRERTLEIVDFLLERGIKALVIACNTAS-----AVALEDLREKFDIPVVGVI---------PA--IKPAVALTR 109 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHH-----HHHHHHHHHhCCCCEEEec---------cc--hHHHHHhcc
Confidence 35779999999999999999999998764 333 2467777764578887222 11 334443222
Q ss_pred hhCCCCceEEEEcCC-ChhhhHHHHHHhHhhc------ccccccccccccCCChHHHHHHHHHHHHcCCCCCCCcCCCcC
Q psy13907 151 AKNPAQLVAVGVNCL-APHYVESLLTSAEVEG------QSLELPVNNTLISRKPIQLLSIELELAAAGKMPSGTTQIPFE 223 (698)
Q Consensus 151 ~~~~~~~~aIGiNC~-~p~~i~~~l~~~~~~~------~~~~~p~~~~~~~~gP~~~~~~~~~l~~~~~~~~~~~~~~~~ 223 (698)
...+-+|+-++| .-.....+++.+.... -|..+|.-+..+..||..+ +.++++.. |
T Consensus 110 ---~~~IgViaT~~Tvks~~y~~~i~~~~~~~~V~~la~p~lV~lvE~g~~~~~~~~-~~l~~~l~-----------~-- 172 (269)
T COG0796 110 ---NGRIGVIATPATVKSNAYRDLIARFAPDCEVESLACPELVPLVEEGIRGGPVAL-EVLKEYLP-----------P-- 172 (269)
T ss_pred ---CCeEEEEeccchhccHHHHHHHHHhCCCCEEEEecCcchHHHHhcccccCHHHH-HHHHHHhc-----------c--
Confidence 235778888886 4455677777664332 2346788888888887766 44443321 1
Q ss_pred ccEEeecCCCCceeecCeeeeeeeccchhhhccccchhhhhHHHHHHHHhhCceEEEeccccc--ccccccCCCCcCcCC
Q psy13907 224 APLKAKPNRSLFETYHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKLYLIDGGFSS--QLSKHVGEDNVTEKD 301 (698)
Q Consensus 224 ~~~~~~pnag~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~i~dG~~gt--~l~~~~g~~~~~~~~ 301 (698)
..++| +. ..| +.| -|+..+....+ + ++...+-++|.+-.+ .+.+.....+..-++
T Consensus 173 -----~~~~~-~D----tlV-----LGC----THyPll~~~i~---~-~~~~~v~lids~~~~a~~~~~~L~~~~~~~~~ 229 (269)
T COG0796 173 -----LQEAG-PD----TLV-----LGC----THYPLLKPEIQ---Q-VLGEHVALIDSGAETARRLARLLSPEGLLAKG 229 (269)
T ss_pred -----hhccC-CC----EEE-----EeC----cCcHHHHHHHH---H-HhCCCceEeCCHHHHHHHHHHHhChhhhcccc
Confidence 12333 21 111 222 34445544333 2 456679999998533 222221110000000
Q ss_pred --CcccchhhcccChHHHHHHHHHHHHHhcchh
Q psy13907 302 --NPLWCSAFLHSNRQAVIDTHRDYVRAGCDIV 332 (698)
Q Consensus 302 --~~lws~~~~l~~Pe~V~~iH~~yl~AGAdII 332 (698)
++.-...+.-.+|+...++-..|+..+-..+
T Consensus 230 ~~~~~~~~f~~tg~~~~~~~~~~~~l~~~~~~~ 262 (269)
T COG0796 230 ADGGPDHRFFTTGDPDEFEQLLKRWLGLGFEGV 262 (269)
T ss_pred cCCCcceEEEEcCCcHHHHHHHHHHhccCccce
Confidence 0000144556788888888888887765533
No 500
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.12 E-value=2.1e+02 Score=32.12 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=59.4
Q ss_pred HHHHHH-HHHHHHhcCCCeEEEEEEecCCCccCCCCcHHHHHHHHHHhCCCCceEEEEcCCC--hh-------hhHHHHH
Q psy13907 444 QEEAMV-LAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLA--PH-------YVESLLT 513 (698)
Q Consensus 444 ~~Eaka-a~~a~~~~~~~Pv~iS~t~~~~g~l~~G~~l~~~v~~~~~~~~~~~~~iGlNC~~--p~-------~~~~~l~ 513 (698)
-.+++. +.++.+++...-++|-.||..+ .-|+.+..+++.+.+.. +...+-++|-+ -. .+..+++
T Consensus 71 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~~---~iGdDi~~v~~~~~~~~--~~~vi~v~t~gf~g~~~~G~~~a~~~l~~ 145 (410)
T cd01968 71 EKKLYKAILEIIERYHPKAVFVYSTCVVA---LIGDDIDAVCKTASEKF--GIPVIPVHSPGFVGNKNLGNKLACEALLD 145 (410)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCchh---hhccCHHHHHHHHHHhh--CCCEEEEECCCcccChhHHHHHHHHHHHH
Confidence 334443 4444444432234444444332 67888988888875432 44567888832 11 1223333
Q ss_pred Hhc-CCCCEEEecCCCCCcCCCCcccccCCChhhHHHHHHHHHHcCCeEEe-ecCCCchHHHHHHHhccccC
Q psy13907 514 SAG-RDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGVKYVG-GCCRTNADDMKNVNQVPVKF 583 (698)
Q Consensus 514 ~l~-~~~pl~~yPNaG~~~d~~~g~~~~~~~p~~~a~~~~~~~~~G~~iiG-GCCGTtP~hI~al~~~v~~~ 583 (698)
.+. ...+-..-||. .| --|.+. .+.++.+.-+-+.+.|++++. =++++|-++|+.+.++--..
T Consensus 146 ~l~~~~~~~~~~~~~--VN--iig~~~---~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lni 210 (410)
T cd01968 146 HVIGTEEPEPLTPYD--IN--LIGEFN---VAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLNV 210 (410)
T ss_pred HhcCCCCcccCCCCc--EE--EECCCC---CcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEEE
Confidence 332 11110000111 11 112121 122333322333356865543 24458999999998765544
Done!