RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13907
(698 letters)
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism,
homocysteinemia, zinc, thiol alkyl transfer; HET: CBH
CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A*
1umy_A
Length = 406
Score = 131 bits (332), Expect = 2e-33
Identities = 58/329 (17%), Positives = 109/329 (33%), Gaps = 57/329 (17%)
Query: 266 QKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKD--NPLWCSAFLHSNRQAVIDTHRD 323
+ I E + ++ + DGGF L K + P + +AV HR+
Sbjct: 11 KGILERLNAGEIVIGDGGFVFALEKR----GYVKAGPWTPEAA----VEHPEAVRQLHRE 62
Query: 324 YVRAGCDIVTTNTYQASVEGFVQH--LGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIA 381
++RAG +++ T T+ AS + L + ++ A ++
Sbjct: 63 FLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQ----------VAD 112
Query: 382 SRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL 441
VAG + ++L + E+ ++E ++ +D L E
Sbjct: 113 EGDALVAGGVSQTPSYLSA-----------KSETEVKKVFLQQLEVFMKKNVDFLIAEYF 161
Query: 442 PAQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVN 501
EEA+ E + G + + + HG A +GVN
Sbjct: 162 EHVEEAVWAVETLIAS-GKPVAATMAI-GPEGDLHG---VPPGEAAVRLVKAGASIIGVN 216
Query: 502 C------LAPH--YVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPS------- 546
C ++ L +A L+ P + T D ++ +++ P
Sbjct: 217 CHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVA 276
Query: 547 ----VDTYVPRWLDTGVKYVGGCCRTNAD 571
+ Y + GV+Y+GGCC
Sbjct: 277 TRWDIQKYAREAYNLGVRYIGGCCGFEPY 305
Score = 61.8 bits (150), Expect = 3e-10
Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 26/153 (16%)
Query: 12 LSEDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYI 71
L + ++ A ++ VAG + ++L
Sbjct: 91 LEKISGQEVNEAAADIARQVA----------DEGDALVAGGVSQTPSYLSA--------- 131
Query: 72 DSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWISFSCK 131
+ E+ ++E ++ +D L E EEA+ E + G + +
Sbjct: 132 --KSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIAS-GKPVAATMAI- 187
Query: 132 DEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 164
+ HG A +GVNC
Sbjct: 188 GPEGDLHG---VPPGEAAVRLVKAGASIIGVNC 217
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport;
HET: CAF; 2.10A {Homo sapiens}
Length = 341
Score = 129 bits (326), Expect = 3e-33
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 582 KFSITPESLTNARDKFNIPR-FRISGHLDSTECSVVRPFTGEIVIEQTELPIKSVELQLV 640
+ + P+ + + + I I + ++ + G+I + I+ +ELQL+
Sbjct: 155 QLATYPDVNNSIKMEVGIEDXLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLI 214
Query: 641 RVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTLITSN--FKI 696
+ E G + + I +I +G G IPI + PT+ N F +
Sbjct: 215 KKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSV 272
Score = 63.9 bits (155), Expect = 4e-11
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 194 SRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVFVNVQYNLKCEL 253
+ +++ ELA G++ + FE KP +E+Y G V ++Y LK +
Sbjct: 84 KSNTHEFVNLVKELALPGELTQSRS-YDFEFMQVEKP----YESYIGANVRLRYFLKVTI 138
Query: 254 KRSHFNILSKDLQKINEFILEN 275
R DL K + I+
Sbjct: 139 VRR-----LTDLVKEYDLIVHQ 155
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer,
fibronectin III, arrestin domain, membrane,
phosphorylation, protein transport; 2.10A {Mus musculus}
PDB: 3lh9_A 3lh8_A 3lha_A
Length = 340
Score = 127 bits (320), Expect = 2e-32
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query: 567 RTNADDMKNVNQVPVKFSITPESLTNARDKFNIPR-FRISGHLDSTECSVVRPFTGEIVI 625
R D +K ++ V S PE ++ + + I I + ++ + G+I
Sbjct: 140 RRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYF 199
Query: 626 EQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFT 685
+ IK +E+ +++ ET G + I +I +G G IPI +
Sbjct: 200 LLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYEL 259
Query: 686 CPTLITSN--FKI 696
PT+ N F +
Sbjct: 260 TPTMRDINKKFSV 272
Score = 65.9 bits (160), Expect = 1e-11
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 194 SRKPIQLLSIELELAAAGKMPSGTTQIPFEAPLKAKPNRSLFETYHGVFVNVQYNLKCEL 253
+ +S+ +LA G++ FE KP +E+Y G V ++Y L+ +
Sbjct: 84 RGNHHEFVSLVKDLARPGEITQSQA-FDFEFTHVEKP----YESYTGQNVKLRYFLRATI 138
Query: 254 KRSHFNILSKDLQKINEFILENK 276
R D+ K + ++
Sbjct: 139 SRR-----LNDVVKEMDIVVHTL 156
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 93.0 bits (232), Expect = 7e-20
Identities = 65/315 (20%), Positives = 120/315 (38%), Gaps = 67/315 (21%)
Query: 272 ILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDI 331
+L ++ L+DG + ++ K+ +D V+ HR Y+ +G D+
Sbjct: 10 LLSERVLLLDGAYGTEFMKYGYDDL-----PEELN----IKAPDVVLKVHRSYIESGSDV 60
Query: 332 VTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSL 391
+ TNT+ A+ + GL ED+ ++R+AV+ + A + V G +
Sbjct: 61 ILTNTFGATRMKL-RKHGL-EDKLDPIVRNAVRIARRA------AGEKL------VFGDI 106
Query: 392 GSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETL--PAQEEAMV 449
G G T +E + R +E +++ G+D + ET + +A V
Sbjct: 107 GPTGELP---YPLGS-----TLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAV 158
Query: 450 LAELIKEY-PGLKAWISFSCKDEKHTCHGDKFG--LIARDV----YAKNPAQLVAVGVNC 502
LA +E + + D+ G L D + + A+G+NC
Sbjct: 159 LA--AREVSRDVFLIAHMTF---------DEKGRSLTGTDPANFAITFDELDIDALGINC 207
Query: 503 ------LAPHYVESLLTSAGRDVPLLCCPNSG--ETFDPGQRIWMNKDSVP-SVDTYVPR 553
+ P + L D L+ PN+G + G+ ++ P ++
Sbjct: 208 SLGPEEILPI-FQELSQYT--DKFLVVEPNAGKPIVEN-GKTVY---PLKPHDFAVHIDS 260
Query: 554 WLDTGVKYVGGCCRT 568
+ + GV GGCC T
Sbjct: 261 YYELGVNIFGGCCGT 275
Score = 41.7 bits (99), Expect = 7e-04
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 24/108 (22%)
Query: 14 EDQSVQLIRDAVKYVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDS 73
ED+ ++R+AV+ + A + V G +G G
Sbjct: 79 EDKLDPIVRNAVRIARRA------AGEKL------VFGDIGPTGELP---YPLGS----- 118
Query: 74 TTPQELIDYHRPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIKEY 119
T +E + R +E +++ G+D + ET + +A VLA +E
Sbjct: 119 TLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLA--AREV 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 82.0 bits (202), Expect = 4e-16
Identities = 107/611 (17%), Positives = 184/611 (30%), Gaps = 219/611 (35%)
Query: 6 FVQHLGLSEDQSVQLIRDAVK-YVKEAIVLEEKRDPAIAS---RHVRVAGSLGSYGAFLH 61
L D ++ ++ +K Y+ I+ + D S R V G+ F
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIF-- 160
Query: 62 DGSEYRG-----DYIDSTTPQELID-YH--RPRIEALIQGGIDLLAIETLPAQEEAMVLA 113
G G DY + EL D Y + LI+ + ETL E
Sbjct: 161 -G----GQGNTDDYFE-----ELRDLYQTYHVLVGDLIK-----FSAETL--SELIRTTL 203
Query: 114 ELIKEYP-GL--KAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYV 170
+ K + GL W+ + D P +GV LA HYV
Sbjct: 204 DAEKVFTQGLNILEWL-----ENPSNTPDK-------DYLLSIPISCPLIGVIQLA-HYV 250
Query: 171 ESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIELE--LAAAGKMPSGTTQIPFEAPLKA 228
+A++ G + P R ++ + + + A + + + F + KA
Sbjct: 251 ----VTAKLLGFT---PGE----LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 229 KPNRSLFETYHGVFVNVQYNLKCELKRSH--FNILSKDLQKINEFILENK------LYLI 280
LF + GV R + + S + + + N+ L I
Sbjct: 300 I--TVLF--FIGV-------------RCYEAYPNTSLPPSILEDSLENNEGVPSPML-SI 341
Query: 281 DGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQ---AVIDTHRDYVRAGCDIVTTNTY 337
Q+ +V + N + L + +Q ++++ ++ V +G
Sbjct: 342 SNLTQEQVQDYVNKTN-----------SHLPAGKQVEISLVNGAKNLVVSG--------P 382
Query: 338 QASVEGFVQHL-------GLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGS 390
S+ G L GL DQS R + + +R ++R
Sbjct: 383 PQSLYGLNLTLRKAKAPSGL--DQS----R--IPF--------SERKLKFSNR------- 419
Query: 391 LGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVL 450
FL +P +H LL PA + ++
Sbjct: 420 ------FL-----------PVASP-----FHSH-----------LLV----PASD--LIN 440
Query: 451 AELIKEYPGLKAWISFSCKDEK----HTCHGDKFGLIARDVYAKNPAQLVAVGVNCLA-- 504
+L+K +SF+ KD + T G D+ + V+C+
Sbjct: 441 KDLVKN------NVSFNAKDIQIPVYDTFDG-------SDL-RVLSGSISERIVDCIIRL 486
Query: 505 P-HYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLD-TGVKYV 562
P + + A +L F PG + R D TGV+ +
Sbjct: 487 PVKWETTTQFKATH---ILD-------FGPG--------GASGLGVLTHRNKDGTGVRVI 528
Query: 563 -GGCCRTNADD 572
G N DD
Sbjct: 529 VAGTLDINPDD 539
Score = 67.4 bits (164), Expect = 1e-11
Identities = 80/495 (16%), Positives = 137/495 (27%), Gaps = 172/495 (34%)
Query: 284 FSSQLSKHVGEDNVTEKDNP-----LWCSAFLH-----------SNRQAVIDT-----HR 322
F+ L + + D P L FL V++
Sbjct: 37 FNKILPEP--TEGFAADDEPTTPAELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 323 DYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVK-YVKEAIALEEKRDPAIA 381
Y+ G DI L D ++ ++ +K Y+ I + D
Sbjct: 94 CYLE-GNDIHA----------LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 382 S---RHVRVAGSLGSYGAFLHDGSEYRG-----DYIDSTTPQELID-YH--RPRIEALIQ 430
S R V G+ F G G DY + EL D Y + LI+
Sbjct: 143 SALFRAVG-EGNAQLVAIF---G----GQGNTDDYFE-----ELRDLYQTYHVLVGDLIK 189
Query: 431 GGIDLLAIETLPAQEEAMVLAELIKEYP-GL--KAWISFSCKDEKHTCHGDKF------- 480
+ ETL E + K + GL W+ + +
Sbjct: 190 -----FSAETL--SELIRTTLDAEKVFTQGLNILEWL-----ENPSNTPDKDYLLSIPIS 237
Query: 481 ----GL-------IARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGE 529
G+ + + P +L + + H + L+T+ + +S E
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSY-LKGATGH-SQGLVTAV-----AIAETDSWE 290
Query: 530 TFD---------------------PGQRIW--MNKDSVPSVDTYVPRW-LDTGVKYVGGC 565
+F P + + +DS+ + + VP L +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSPML--SIS---NL 344
Query: 566 CRTNADD-MKNVNQ-VPV--KFSITPESLTNARDKFNIPRFRISGHLDSTE--CSVVR-- 617
+ D + N +P + I SL N +SG S +R
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEI---SLVNGAKNLV-----VSGPPQSLYGLNLTLRKA 396
Query: 618 -----------PFTGEIVIEQTE-LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGE 665
PF+ + LP+ A+++ N + +
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPV-----------ASPFHSHLLVPASDLINKDLVK 445
Query: 666 GNV-FTG--IPIPIY 677
NV F I IP+Y
Sbjct: 446 NNVSFNAKDIQIPVY 460
Score = 42.7 bits (100), Expect = 5e-04
Identities = 59/340 (17%), Positives = 111/340 (32%), Gaps = 124/340 (36%)
Query: 92 QGGIDLLAIETLPAQEEAMVLAELIKEYPGLKA-WISFSCKDE--KHTCHGDKFGLIARD 148
QG +QE+ M + +L K + W + H D +G D
Sbjct: 1624 QG-----------SQEQGMGM-DLYKTSKAAQDVW------NRADNHF--KDTYGFSILD 1663
Query: 149 VYAKNPAQLV----AVGVNCLAPHYVESLLTSAEVEGQSLELPVNNTLISRKPIQLLSIE 204
+ NP L + +Y +++ V+G+ + + S
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENY-SAMIFETIVDGKLKTEKIFKEI----NEHSTSYT 1718
Query: 205 LELAAAGKMPSGT--TQIP---------FEAPLKAK---PNR------SL---------- 234
+ G + S T TQ P FE LK+K P SL
Sbjct: 1719 FR-SEKGLL-SATQFTQ-PALTLMEKAAFED-LKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 235 ----FET------YHGVFVNVQYNLKCELKRSHFNILSKDLQKINEFILENKL-YLIDGG 283
E+ Y G+ + V + EL RS++ +++ + ++ + L Y+++
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVP-RDELGRSNYGMIAINPGRVAASFSQEALQYVVE-- 1831
Query: 284 FSSQLSKHVGE------DNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTY 337
++ K G NV N+Q V AG D+
Sbjct: 1832 ---RVGKRTGWLVEIVNYNV--------------ENQQYVA--------AG-DL------ 1859
Query: 338 QASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRD 377
+++ L + Q + +I ++++++LEE
Sbjct: 1860 -RALDTVTNVLNFIKLQKIDIIE-----LQKSLSLEEVEG 1893
Score = 40.8 bits (95), Expect = 0.002
Identities = 52/310 (16%), Positives = 95/310 (30%), Gaps = 108/310 (34%)
Query: 330 DIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHV--RV 387
DIV N ++ H G + + IR+ Y A+ E D + + + +
Sbjct: 1663 DIVINNPVNLTI-----HFGGEKGKR---IRE--NY--SAMIFETIVDGKLKTEKIFKEI 1710
Query: 388 AGSLGSYGAFLHDGSEYRGDYIDST--TPQELIDYHRPRI--------EALI-QGGIDLL 436
SY F + + +T T Q P + E L +G I
Sbjct: 1711 NEHSTSY-TFRSEKGL-----LSATQFT-Q-------PALTLMEKAAFEDLKSKGLIPAD 1756
Query: 437 AI-------E-T-LPAQEEAMVLAELIK--EYPGLKAWISFSCKDEKHTCHGDKFGLIAR 485
A E L + + M + L++ Y G+ + D+ G
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM---------QVAVPRDELGRSNY 1807
Query: 486 DVYAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCP---NSGETFDPGQRIWMNKD 542
+ A NP ++ A + ++ ++ G+ L N Q
Sbjct: 1808 GMIAINPGRVAAS----FSQEALQYVVERVGKRTGWLVEIVNYNV-----ENQ------- 1851
Query: 543 SVPSVDTYV----PRWLDTGVKYVGGCCRTNADDMKNVNQVPVKFSITPESLTNARDKFN 598
YV R LDT + N ++ ++ + ++ S++ E
Sbjct: 1852 ------QYVAAGDLRALDTVTNVL------NFIKLQKIDIIELQKSLSLE---------- 1889
Query: 599 IPRFRISGHL 608
+ GHL
Sbjct: 1890 ----EVEGHL 1895
Score = 40.4 bits (94), Expect = 0.002
Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 61/233 (26%)
Query: 283 GFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVE 342
GFS + V +NP+ + +H + +Y + ++ V+
Sbjct: 1658 GFS--ILDIV-------INNPV--NLTIHFGGEKGKRIRENY--------SAMIFETIVD 1698
Query: 343 GFVQHLGLSEDQSVQLIRDAVKYV----KEAIALEEKRDPAI------ASRHVR------ 386
G ++ + ++ + + Y K ++ + PA+ A ++
Sbjct: 1699 GKLKTEKIFKE----INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 387 ----VAG-SLGSYGA--------FLHDGSE---YRGDYIDSTTPQELIDYHRPRIEALIQ 430
AG SLG Y A + E YRG + P++ + + A+
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 431 GGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWIS-FSCKDEKHTCHGDKFGL 482
G + +QE + E + + G I ++ +++++ GD L
Sbjct: 1815 GRVAASF-----SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Score = 39.6 bits (92), Expect = 0.004
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 25/130 (19%)
Query: 31 AI--VLEEK-RDPAIASRHVRVAG-SLGSYGA--------FLHDGSE---YRGDYIDSTT 75
A L+ K PA A+ AG SLG Y A + E YRG +
Sbjct: 1742 AAFEDLKSKGLIPADAT----FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 76 PQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWIS-FSCKDEK 134
P++ + + A+ G + +QE + E + + G I ++ ++++
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASF-----SQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 135 HTCHGDKFGL 144
+ GD L
Sbjct: 1853 YVAAGDLRAL 1862
Score = 39.6 bits (92), Expect = 0.004
Identities = 46/274 (16%), Positives = 69/274 (25%), Gaps = 129/274 (47%)
Query: 430 QGGIDLLAIETLPAQEEAMVLAELIKEYPGLKA-WISFSCKDE--KHTCHGDKFGLIARD 486
QG +QE+ M + +L K + W + H D +G D
Sbjct: 1624 QG-----------SQEQGMGM-DLYKTSKAAQDVW------NRADNHF--KDTYGFSILD 1663
Query: 487 VYAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPS 546
+ NP L H GE G+RI N
Sbjct: 1664 IVINNPVNLTI--------H-------------------FGGEK---GKRIREN------ 1687
Query: 547 VDTYVPRWLDTGVKYVGGCCRTNADDMKNVNQVPVKFSITPESLTNARDKFNIPRFRISG 606
Y T D ++ + + S T F + G
Sbjct: 1688 --------------YSAMIFETIVDGKLKTEKIFKEINEHSTSYT-----FRSEK----G 1724
Query: 607 HLDSTECSVVRPFTGEIVIEQTELP-IKSVELQLVRV--------ETCGCAEGYSRDATE 657
L +T+ FT Q P + +E A G+S
Sbjct: 1725 LLSATQ------FT------Q---PALTLMEKAAFEDLKSKGLIPADATFA-GHS----- 1763
Query: 658 IQNIQIGE-------GNVFTGIPIP--IYMVFPR 682
+GE +V I + +VF R
Sbjct: 1764 -----LGEYAALASLADVM---SIESLVEVVFYR 1789
Score = 38.5 bits (89), Expect = 0.010
Identities = 34/225 (15%), Positives = 58/225 (25%), Gaps = 68/225 (30%)
Query: 6 FVQHLGLSEDQSVQLIRDAVK-YVKEAIVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGS 64
F G S I D V + + +R Y A +
Sbjct: 1653 FKDTYGFS-------ILDIVINNPVNLTIHF----GGEKGKRIREN-----YSAMI---- 1692
Query: 65 EYRGDYIDSTTPQELIDYHRPRIEALI-QGGIDLLAIETLPAQEEAMVLA-----ELIK- 117
+ +++ + + LL+ T Q A+ L E +K
Sbjct: 1693 -FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQP-ALTLMEKAAFEDLKS 1749
Query: 118 ----------------EYPGLKAW---ISFSCKD-----------EKHTCHGDKFGLIAR 147
EY L + +S + D+ G
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIE--SLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 148 DVYAKNPAQLVAVGVNCLAPHYVESLLTSAEVEGQSLELPVN-NT 191
+ A NP ++ A + VE + + G +E VN N
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERV---GKRTGWLVE-IVNYNV 1848
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 3e-10
Identities = 81/615 (13%), Positives = 162/615 (26%), Gaps = 242/615 (39%)
Query: 3 VEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVLEEKRD----PAIASRHVRVAGSLGSYGA 58
+ FV ++ + ++D K + EE S +R+ +L S
Sbjct: 26 EDAFV------DNFDCKDVQD---MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 59 -----FLHDG-------------SEYRG------DYIDS-----TTPQELIDYHRPRIE- 88
F+ + +E R YI+ Q Y+ R++
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 89 ------ALIQ------------GGI--DLLAIETLPAQEEAMVLAELIKEYPGLKAWISF 128
AL++ G +A++ + ++ + W++
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-------KVQCKMDFKIFWLNL 189
Query: 129 SCKDEKHT--------CH---------GDKFG--------------------------LI 145
+ T + D L+
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 146 ARDVYAKNPAQLVAVGVNCLAPHYVESLLTS----------AEVEGQSLELPVNNTLISR 195
+V N A ++C + LLT+ A + TL
Sbjct: 250 LLNVQ--NAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 196 KPIQLLSIELELAAAGKMPSGTTQI-PFE-----APLKAKPNRSLFETYH---------- 239
+ LL L+ +P P ++ ++ +
Sbjct: 302 EVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTI 358
Query: 240 -GVFVNVQYNLKCELKRSHFN---ILSKDLQKINEFILE---------------NKLY-- 278
+N L+ R F+ + I +L NKL+
Sbjct: 359 IESSLN---VLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 279 -LIDGGFSS--------QLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVID---THRDYVR 326
L++ L V +N LH ++++D + +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYA----------LH---RSIVDHYNIPKTFDS 461
Query: 327 AGCDIVTTNTYQASVEGFVQHLG-----LSEDQSVQLIRDA---VKYVKEAIALEEKRDP 378
+ Y F H+G + + + L R +++++ I
Sbjct: 462 DDLIPPYLDQY------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-------- 507
Query: 379 AIASRHVRVA-GSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLA 437
RH A + GS L Y+ YI + P+ E L+ +L
Sbjct: 508 ----RHDSTAWNASGSILNTLQQLKFYK-PYI---CDND------PKYERLVN---AIL- 549
Query: 438 IETLPAQEEAMVLAE 452
+ LP EE ++ ++
Sbjct: 550 -DFLPKIEENLICSK 563
Score = 55.6 bits (133), Expect = 5e-08
Identities = 53/420 (12%), Positives = 115/420 (27%), Gaps = 134/420 (31%)
Query: 321 HRDYVRAGCDIVTTNTYQASVEGFVQHL--GLSEDQSVQLIRDAVKYVKEAIALEEKRD- 377
H D+ T +Q + + ++ + ++D K ++ EE
Sbjct: 6 HMDF--------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQD---MPKSILSKEEIDHI 54
Query: 378 ---PAIASRHVRVAGSLGSYGA-----FLHDG-------------SEYRG------DYID 410
S +R+ +L S F+ + +E R YI+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 411 S-----TTPQELIDYHRPRIE-------ALIQ------------GGI--DLLAIETLPAQ 444
Q Y+ R++ AL++ G +A++ +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 445 EEAMVLAELIKEYPGLKAWISFSCKDEKHT--------CHGDKFGLIARDVYAKNPAQLV 496
++ + W++ + T + +R ++ N +
Sbjct: 175 -------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 497 AVGVNCL-----APHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWM---NK---DSVP 545
L + Y LL +V + F+ +I + K D +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVL--LNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 546 SVDTYVPRWLDTGV------------KYVGGCCRTNADD----MKNVNQVPVKFSITPES 589
+ T + KY+ D + N P + SI ES
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLD----CRPQDLPREVLTTN--PRRLSIIAES 336
Query: 590 LTNARDKFNIPRFR----------ISGHLDSTECSVVRPFTGEIVI--EQTELPIKSVEL 637
+ + ++ ++ I L+ E + R + + +P + L
Sbjct: 337 IRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.37
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 8/31 (25%)
Query: 352 EDQSVQLIRDAVK-YVKEAIALEEKRDPAIA 381
E Q+++ ++ ++K Y ++ A PA+A
Sbjct: 18 EKQALKKLQASLKLYADDS-A------PALA 41
Score = 31.1 bits (69), Expect = 0.58
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 8/31 (25%)
Query: 14 EDQSVQLIRDAVK-YVKEAIVLEEKRDPAIA 43
E Q+++ ++ ++K Y ++ PA+A
Sbjct: 18 EKQALKKLQASLKLYADDSA-------PALA 41
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 31.5 bits (72), Expect = 0.97
Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 39/130 (30%)
Query: 314 RQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVK--------- 364
+ + + G V + V + + E +++ + + +
Sbjct: 221 KHYIESAQEHLLSLG---VHS----------VGFMSVGEK-ALKALFELEREGRLKMNVF 266
Query: 365 ---YVKEAIALEEKRDPAIASRHVRVA-------GSLGSYGAFLH----DGSEYRGDYID 410
+ LEE R +R+ GSLG+ A L D G+ +
Sbjct: 267 AYLSPELLDKLEELNLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELV- 325
Query: 411 STTPQELIDY 420
E+++
Sbjct: 326 -MNKDEIVEV 334
Score = 30.7 bits (70), Expect = 1.9
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 13/60 (21%)
Query: 34 LEEKRDPAIASRHVRVA-------GSLGSYGAFLH----DGSEYRGDYIDSTTPQELIDY 82
LEE R +R+ GSLG+ A L D G+ + E+++
Sbjct: 277 LEELNLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELV--MNKDEIVEV 334
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 31.0 bits (71), Expect = 1.0
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 20/70 (28%)
Query: 303 PLWCSAFLHSNRQAVIDTH----------RDYVRAGCDIVTTNTYQASVEGFVQHLGLSE 352
P + S + +D H RAG D +T E
Sbjct: 46 PFFVSQ-VKKLATKPLDCHLMVTRPQDYIAQLARAGADFIT-----LHPETINGQA---- 95
Query: 353 DQSVQLIRDA 362
+ + IR
Sbjct: 96 FRLIDEIRRH 105
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 31.0 bits (71), Expect = 1.5
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 9/44 (20%)
Query: 517 RDVPLLCCPNSGE--------TFDPGQRIWMNKDSVPSVDTYVP 552
V L + + DP RI M PS
Sbjct: 28 TTVELRVPEGTNSVLVKNLYLSCDPYMRIRMG-KPDPSTAALAQ 70
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 30.2 bits (69), Expect = 1.6
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 303 PLWCSAFLHSNRQAVIDTH----------RDYVRAGCDIVTTNTYQASVEGFVQHLGLSE 352
PL + L +D H D+++AG DIV+ + + S HL
Sbjct: 57 PLVVDS-LRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVH-CEQSS---TIHL---- 107
Query: 353 DQSVQLIRDA 362
+++ I+
Sbjct: 108 HRTINQIKSL 117
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 29.9 bits (68), Expect = 3.0
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 531 FDPGQRIWMNKDSVPSVDTYVPRW 554
DP R MN+D+ Y+ W
Sbjct: 54 VDPYMRCRMNEDTGTD---YITPW 74
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 29.4 bits (66), Expect = 3.3
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 84 RPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIKEYPGL 122
P +AL+ GG+ +L + TL +A+ + KE P
Sbjct: 31 VPMAKALVAGGVRVLNV-TLRTECAVDAI--RAIAKEVPEA 68
Score = 29.4 bits (66), Expect = 3.3
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 422 RPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIKEYPGL 460
P +AL+ GG+ +L + TL +A+ + KE P
Sbjct: 31 VPMAKALVAGGVRVLNV-TLRTECAVDAI--RAIAKEVPEA 68
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 29.0 bits (66), Expect = 3.8
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 21/70 (30%)
Query: 303 PLWCSAFLHSNRQAVIDTH----------RDYVRAGCDIVTTNTYQASVEGFVQHLGLSE 352
++ + + + V D H + +AG DI+T + +++ H+
Sbjct: 50 ADVVAS-MRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIH-TESTR-----HI---- 98
Query: 353 DQSVQLIRDA 362
++Q I+ A
Sbjct: 99 HGALQKIKAA 108
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese,
pyrrolidone carboxylic acid, glycoprotein,
metal-binding; HET: NAG BMA MAN HEM; 1.15A
{Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB:
1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A*
2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Length = 299
Score = 29.2 bits (64), Expect = 4.9
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 335 NTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAGSLGSY 394
+ + F+ H+G++ + +A + + L
Sbjct: 49 ISRETLQNAFLNHMGIANSVIELALTNAFVVCEYVTGSDCGDSLVNL-------TLLAEP 101
Query: 395 GAFLHDGSEYRGDY 408
AF HD S R DY
Sbjct: 102 HAFEHDHSFSRKDY 115
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 28.7 bits (65), Expect = 5.4
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 21/71 (29%)
Query: 303 PLWCSAFLHSNRQAVIDTH----------RDYVRAGCDIVTTNTYQASVEGF-VQHLGLS 351
PL A + + +D H D+ +AG DI++ VE HL
Sbjct: 51 PLIVDA-IRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIIS-----VHVEHNASPHL--- 101
Query: 352 EDQSVQLIRDA 362
+++ IR+
Sbjct: 102 -HRTLCQIREL 111
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 28.7 bits (63), Expect = 6.3
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 112 LAELIKEYPGLKAWISFSCKDEKHTCHGDKF 142
+ IK YP +A + +
Sbjct: 148 FRDFIKIYPETEAIVIGIRHTDPFGEALKPI 178
Score = 28.7 bits (63), Expect = 6.3
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 450 LAELIKEYPGLKAWISFSCKDEKHTCHGDKF 480
+ IK YP +A + +
Sbjct: 148 FRDFIKIYPETEAIVIGIRHTDPFGEALKPI 178
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.80A {Thermus
thermophilus} SCOP: e.22.1.1
Length = 348
Score = 28.8 bits (65), Expect = 6.4
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 13/70 (18%)
Query: 95 IDLLAIETLPAQEEAMVLAELIKEY-----PGLKAWISFSCKDEKHTCHGDKFGLIARDV 149
+L A++TLP L E K + + +AR V
Sbjct: 154 AELRALKTLPLPTFKEGLVEAFK-HGLIAGDEALLKVEDLTPQSPRLEA-----FLARAV 207
Query: 150 YAKNPAQLVA 159
K ++
Sbjct: 208 AVK--VRVTE 215
Score = 28.8 bits (65), Expect = 6.4
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 13/70 (18%)
Query: 433 IDLLAIETLPAQEEAMVLAELIKEY-----PGLKAWISFSCKDEKHTCHGDKFGLIARDV 487
+L A++TLP L E K + + +AR V
Sbjct: 154 AELRALKTLPLPTFKEGLVEAFK-HGLIAGDEALLKVEDLTPQSPRLEA-----FLARAV 207
Query: 488 YAKNPAQLVA 497
K ++
Sbjct: 208 AVK--VRVTE 215
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 28.3 bits (63), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 84 RPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIKEYPGL 122
P +AL+ GG+ LL + TL A A+ + + K P
Sbjct: 28 IPMAKALVAGGVHLLEV-TLRTEAGLAAI--SAIKKAVPEA 65
Score = 28.3 bits (63), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 422 RPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIKEYPGL 460
P +AL+ GG+ LL + TL A A+ + + K P
Sbjct: 28 IPMAKALVAGGVHLLEV-TLRTEAGLAAI--SAIKKAVPEA 65
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 27.9 bits (63), Expect = 9.1
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 20/62 (32%)
Query: 311 HSNRQAVIDTH----------RDYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIR 360
+ D H + AG + T + +A+ ++ ++ IR
Sbjct: 60 QLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFH-LEAT-----ENP----GALIKDIR 109
Query: 361 DA 362
+
Sbjct: 110 EN 111
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 27.9 bits (63), Expect = 9.4
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 20/70 (28%)
Query: 303 PLWCSAFLHSNRQAVIDTH----------RDYVRAGCDIVTTNTYQASVEGFVQHLGLSE 352
+ L + +A +D H +AG T +E +
Sbjct: 53 APVIQS-LRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFT-----FHIEVSRDNW---- 102
Query: 353 DQSVQLIRDA 362
+ +Q I+
Sbjct: 103 QELIQSIKAK 112
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 27.9 bits (62), Expect = 9.9
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 84 RPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIKEYPGL 122
P + L + G+ + I T A +A+ L P
Sbjct: 32 LPLADTLAKNGLSVAEI-TFRSEAAADAI--RLLRANRPDF 69
Score = 27.9 bits (62), Expect = 9.9
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 422 RPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIKEYPGL 460
P + L + G+ + I T A +A+ L P
Sbjct: 32 LPLADTLAKNGLSVAEI-TFRSEAAADAI--RLLRANRPDF 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,764,532
Number of extensions: 674366
Number of successful extensions: 2179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2163
Number of HSP's successfully gapped: 53
Length of query: 698
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 598
Effective length of database: 3,909,693
Effective search space: 2337996414
Effective search space used: 2337996414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.5 bits)