RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13907
(698 letters)
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 361
Score = 113 bits (284), Expect = 6e-28
Identities = 59/321 (18%), Positives = 109/321 (33%), Gaps = 43/321 (13%)
Query: 270 EFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHRDYVRAGC 329
E + ++ + DGGF L K G W + +AV HR+++RAG
Sbjct: 5 ERLNAGEIVIGDGGFVFALEKR-GYV-----KAGPWTPEAAVEHPEAVRQLHREFLRAGS 58
Query: 330 DIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIASRHVRVAG 389
+++ T T+ AS + + YV E I+ +E + +A
Sbjct: 59 NVMQTFTFYASEDKL---------------ENRGNYVLEKISGQE-----VNEAAADIAR 98
Query: 390 SLGSYGAFL-HDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQEEAM 448
+ G L G Y+ + + E+ ++E ++ +D L E EEA+
Sbjct: 99 QVADEGDALVAGGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAV 158
Query: 449 VLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNCL----A 504
E + + + E R V A V +
Sbjct: 159 WAVETLIASGK-PVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKT 217
Query: 505 PHYVESLLTSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVP-----------SVDTYVPR 553
++ L +A L+ P + T D ++ +++ P + Y
Sbjct: 218 VKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYARE 277
Query: 554 WLDTGVKYVGGCCRTNADDMK 574
+ GV+Y+GGCC ++
Sbjct: 278 AYNLGVRYIGGCCGFEPYHIR 298
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase
MetH, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 300
Score = 109 bits (273), Expect = 5e-27
Identities = 55/315 (17%), Positives = 109/315 (34%), Gaps = 38/315 (12%)
Query: 263 KDLQKINEFILENKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCSAFLHSNRQAVIDTHR 322
++ +++++ +L ++ L+DG + ++ K+ +D V+ HR
Sbjct: 2 RNRREVSK-LLSERVLLLDGAYGTEFMKYGYDD---------LPEELNIKAPDVVLKVHR 51
Query: 323 DYVRAGCDIVTTNTYQASVEGFVQHLGLSEDQSVQLIRDAVKYVKEAIALEEKRDPAIAS 382
Y+ +G D++ TNT+ A+ +H + + I + A E+ I
Sbjct: 52 SYIESGSDVILTNTFGATRMKLRKH---GLEDKLDPIVRNAVRIARRAAGEKLVFGDIGP 108
Query: 383 RHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLP 442
+ ST +E + R +E +++ G+D + ET
Sbjct: 109 TG-------------------ELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFS 149
Query: 443 AQEEAMVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAKNPAQLVAVGVNC 502
E +E I+ DEK A + + A+G+NC
Sbjct: 150 DILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTD--PANFAITFDELDIDALGINC 207
Query: 503 LAPHYVESLL---TSAGRDVPLLCCPNSGETFDPGQRIWMNKDSVPSVDTYVPRWLDTGV 559
+ S D L+ PN+G+ + ++ + + GV
Sbjct: 208 SLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTV-YPLKPHDFAVHIDSYYELGV 266
Query: 560 KYVGGCCRTNADDMK 574
GGCC T + +K
Sbjct: 267 NIFGGCCGTTPEHVK 281
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 261
Score = 31.5 bits (71), Expect = 0.29
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 78 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI---SFSCKDEK 134
++ P ++ LI I + ETL A V L + G + D
Sbjct: 20 SVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGG 79
Query: 135 HTC--HGDKFGLIARDVYAKNPAQLVAVG 161
+ G I +V A ++A+G
Sbjct: 80 YWGKVGGRNMYDICAEV-APKAKAVIAIG 107
Score = 31.5 bits (71), Expect = 0.29
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 416 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI---SFSCKDEK 472
++ P ++ LI I + ETL A V L + G + D
Sbjct: 20 SVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGG 79
Query: 473 HTC--HGDKFGLIARDVYAKNPAQLVAVG 499
+ G I +V A ++A+G
Sbjct: 80 YWGKVGGRNMYDICAEV-APKAKAVIAIG 107
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 261
Score = 31.0 bits (70), Expect = 0.43
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 78 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI-----SFSCKD 132
I +P I+ALI I L ET+ A A L + G + D
Sbjct: 20 AAIRTIKPYIDALILDTISLDYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPTID 79
Query: 133 EKHTCH--GDKFGLIARDVYAKNPAQLVAVG 161
G + A ++ +G
Sbjct: 80 GGQWGMVAGHPMIETCKKA-AAKAKGIICIG 109
Score = 31.0 bits (70), Expect = 0.43
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 416 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI-----SFSCKD 470
I +P I+ALI I L ET+ A A L + G + D
Sbjct: 20 AAIRTIKPYIDALILDTISLDYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPTID 79
Query: 471 EKHTCH--GDKFGLIARDVYAKNPAQLVAVG 499
G + A ++ +G
Sbjct: 80 GGQWGMVAGHPMIETCKKA-AAKAKGIICIG 109
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 267
Score = 29.9 bits (67), Expect = 0.88
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 6/90 (6%)
Query: 78 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI-----SFSCKD 132
++ P I+ LI + L ET+ A A L + +I
Sbjct: 23 SVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAA 82
Query: 133 EKHTC-HGDKFGLIARDVYAKNPAQLVAVG 161
+ L ++A G
Sbjct: 83 NGIYGKVANHTMLDICSRILPKAQAVIAYG 112
Score = 29.9 bits (67), Expect = 0.88
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 6/90 (6%)
Query: 416 ELIDYHRPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGLKAWI-----SFSCKD 470
++ P I+ LI + L ET+ A A L + +I
Sbjct: 23 SVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAA 82
Query: 471 EKHTC-HGDKFGLIARDVYAKNPAQLVAVG 499
+ L ++A G
Sbjct: 83 NGIYGKVANHTMLDICSRILPKAQAVIAYG 112
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 29.7 bits (65), Expect = 1.4
Identities = 30/170 (17%), Positives = 43/170 (25%), Gaps = 12/170 (7%)
Query: 411 STTPQELIDYHRPRIEALIQGGIDLLAIETL--PAQEEAMVLAELIK--EYPGLKAWISF 466
L + RI AL + G L A+ L A +EA + G I
Sbjct: 20 ELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDGRLRGPLHGIPL 79
Query: 467 SCKDE-----KHTCHGDKFGLIARDVYAKNPAQLVAVGVNCLAPHYVESLLTSAGRDVPL 521
KD T G R A +L G L + G D
Sbjct: 80 LLKDNINAAPMATSAGSLALQGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSIS 139
Query: 522 LCCPNSGETFDPGQRIWM---NKDSVPSVDTYVPRWLDTGVKYVGGCCRT 568
G+T +P + + + G + G
Sbjct: 140 GWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCP 189
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 75 TPQELIDYHRPRIEALIQGGID--LLAIETLPAQEEAM-VLAELIKEY 119
TP E I +IEAL + G+ + P +E+++ +L E+I +
Sbjct: 278 TPDEFIP----KIEALGEMGVTQYVAGSPIGPDKEKSIKLLGEVIASF 321
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 413 TPQELIDYHRPRIEALIQGGID--LLAIETLPAQEEAM-VLAELIKEY 457
TP E I +IEAL + G+ + P +E+++ +L E+I +
Sbjct: 278 TPDEFIP----KIEALGEMGVTQYVAGSPIGPDKEKSIKLLGEVIASF 321
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD
{Escherichia coli [TaxId: 562]}
Length = 413
Score = 28.1 bits (61), Expect = 3.7
Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 5/102 (4%)
Query: 253 LKRSHFNILSKDLQKINEFILE-----NKLYLIDGGFSSQLSKHVGEDNVTEKDNPLWCS 307
L S F ++ ++ L +L +DG + LS N
Sbjct: 49 LINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGSGYEVSINDDRQG 108
Query: 308 AFLHSNRQAVIDTHRDYVRAGCDIVTTNTYQASVEGFVQHLG 349
+ + ++ I + + + H+
Sbjct: 109 LPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHIT 150
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 27.4 bits (59), Expect = 6.6
Identities = 8/95 (8%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 32 IVLEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELI---------DY 82
++ D A+ + + S + + + + + +
Sbjct: 230 YSVDPDYDKAVEALRFWAGCLVPSMFKYKVYDPKEVQLHANLVHCDTIKENYMCATDAEE 289
Query: 83 HRPRIEALIQGGIDLLAIETL-PAQEEAMVLAELI 116
IE + GI+ + P + + + +
Sbjct: 290 MIKEIERFKEAGINHFCLGNSSPDVNFGIDIFKEV 324
Score = 27.4 bits (59), Expect = 7.1
Identities = 8/95 (8%), Positives = 27/95 (28%), Gaps = 10/95 (10%)
Query: 370 IALEEKRDPAIASRHVRVAGSLGSYGAFLHDGSEYRGDYIDSTTPQELI---------DY 420
+++ D A+ + + S + + + + + +
Sbjct: 230 YSVDPDYDKAVEALRFWAGCLVPSMFKYKVYDPKEVQLHANLVHCDTIKENYMCATDAEE 289
Query: 421 HRPRIEALIQGGIDLLAIETL-PAQEEAMVLAELI 454
IE + GI+ + P + + + +
Sbjct: 290 MIKEIERFKEAGINHFCLGNSSPDVNFGIDIFKEV 324
>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 353
Score = 27.4 bits (60), Expect = 6.6
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 17/163 (10%)
Query: 3 VEGFVQHLGLSEDQSVQLIRDAVKYVKEAIVL------EEKRDPAIASRHVRVAGSLGSY 56
V + + ++ D K IV + + + V S Y
Sbjct: 192 VLDIIATINKGSIVWQEVFDDKAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWY 251
Query: 57 GAFLHDGSEYRGDYIDSTTPQELIDYHRPRIEALIQGGIDLLAIETLPAQE-------EA 109
+ G ++R Y + + L GG L E + A A
Sbjct: 252 LDLISYGQDWRKYYKVEPLDFGGT----QKQKQLFIGGEACLWGEYVDATNLTPRLWPRA 307
Query: 110 MVLAELIKEYPGLKAWISFSCKDEKHTCHGDKFGLIARDVYAK 152
+ E + ++ + +H C + G+ A+ +YA
Sbjct: 308 SAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAG 350
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
{Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Length = 262
Score = 26.8 bits (59), Expect = 7.8
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 8 QHLGLSEDQSVQLIRDAVKYVKEAIVLEEKR 38
+ LGL+E Q+V+ ++D + ++ EK
Sbjct: 234 RRLGLTEYQAVREMQDGIL----EMIKMEKA 260
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 26.4 bits (58), Expect = 9.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 84 RPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGL 122
P +AL+ GG+ +L + TL + + + KE P
Sbjct: 30 VPMAKALVAGGVRVLNV-TLRTECAVDAIRAIAKEVPEA 67
Score = 26.4 bits (58), Expect = 9.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 422 RPRIEALIQGGIDLLAIETLPAQEEAMVLAELIKEYPGL 460
P +AL+ GG+ +L + TL + + + KE P
Sbjct: 30 VPMAKALVAGGVRVLNV-TLRTECAVDAIRAIAKEVPEA 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,595,894
Number of extensions: 123866
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 27
Length of query: 698
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 606
Effective length of database: 1,144,436
Effective search space: 693528216
Effective search space used: 693528216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.1 bits)