BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13908
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CQJ|A Chain A, Solution Structure Of The S4 Domain Of U3 Small Nucleolar
Ribonucleoprotein Protein Imp3 Homolog
Length = 71
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 102 ASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPELEGD 144
+S RRLP V+ + +M Q L+ A F+EQ HVRVGP++ D
Sbjct: 2 SSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTD 44
>pdb|3IZ6|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 195
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 29 EVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGL 87
E+K++ +G++ KR+ + LSR IR A+ + LD K+P R+ LL ++ GL
Sbjct: 29 ELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGL 87
Query: 88 IRTKWD-LENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+ + L+ +T +F RRL ++++ M + + A I Q H+RVG
Sbjct: 88 LADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVG 139
>pdb|2XZM|D Chain D, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|D Chain D, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 181
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
+E + +E+K++ FG++ +++ + R A+++ LDPKDP R+ + LL
Sbjct: 19 YEKERLDNEMKLIGTFGLKNKREVWRVQMILAKFRKAARELLTLDPKDPRRLFEGSALLR 78
Query: 81 KLYLMGLIRTK-WDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGP 139
+++ GL+ + L+ +T +RRL +++ + + + I Q H++VG
Sbjct: 79 RMFKYGLLSEQERKLDYVLGLTIHKLMERRLQTRVFKLNLANSIHHSRVLIRQRHIKVGK 138
Query: 140 EL 141
L
Sbjct: 139 NL 140
>pdb|1S1H|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 179
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
+E+ E+K+ FG++ K++ Y +LS+ IR A+ + D KDP R+ L+
Sbjct: 1 YESSRLDAELKLAGEFGLKNKKEIYRISFQLSK-IRRAARDLLTRDEKDPKRLFEGNALI 59
Query: 80 EKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+L +G++ K L+ + F +RRL +Y+ + + + A I Q H+ VG
Sbjct: 60 RRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVG 119
Query: 139 PEL 141
++
Sbjct: 120 KQI 122
>pdb|3JYV|D Chain D, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 158
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
+E+ E+K+ FG++ K++ Y +LS+ IR A+ + D KDP R+ L+
Sbjct: 14 YESSRLDAELKLAGEFGLKNKKEIYRISFQLSK-IRRAARDLLTRDEKDPKRLFEGNALI 72
Query: 80 EKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+L +G++ K L+ + F +RRL +Y+ + + + A I Q H+ VG
Sbjct: 73 RRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVG 132
Query: 139 PEL 141
++
Sbjct: 133 KQI 135
>pdb|3IZB|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|E Chain E, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|E Chain E, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|J Chain J, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|J Chain J, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 197
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
+E+ E+K+ FG++ K++ Y +LS+ IR A+ + D KDP R+ L+
Sbjct: 19 YESSRLDAELKLAGEFGLKNKKEIYRISFQLSK-IRRAARDLLTRDEKDPKRLFEGNALI 77
Query: 80 EKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+L +G++ K L+ + F +RRL +Y+ + + + A I Q H+ VG
Sbjct: 78 RRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVG 137
Query: 139 PEL 141
++
Sbjct: 138 KQI 140
>pdb|3J20|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 180
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 77 KLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVR 136
+LL +L +GL+ L++ +T +RRL ++Y+ + + +R A Q I H+
Sbjct: 72 QLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIE 131
Query: 137 V 137
V
Sbjct: 132 V 132
>pdb|3ZEY|6 Chain 6, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 190
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 29 EVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGL 87
E+K+ ++G++ KR+ + LS++ RT A+ + L P R+ + ++ + + G
Sbjct: 26 EMKLCGQYGLRCKREIWRVNMTLSKMRRT-ARLLLTLPENHPRRLLEGSAIMRRCHGYGF 84
Query: 88 IRTKWD-LENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPEL 141
+ D L+ +T +RRL V++++ + + + + I+Q H+ V ++
Sbjct: 85 LDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQI 139
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1 Complexed With Dna
Length = 106
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 18 FISWEADNN----LHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FI+W + ++ RR+GIQK + Y+KLSR +R +K
Sbjct: 30 FIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEK 76
>pdb|1XEA|A Chain A, Crystal Structure Of A Gfo/idh/moca Family Oxidoreductase
From Vibrio Cholerae
pdb|1XEA|B Chain B, Crystal Structure Of A Gfo/idh/moca Family Oxidoreductase
From Vibrio Cholerae
pdb|1XEA|C Chain C, Crystal Structure Of A Gfo/idh/moca Family Oxidoreductase
From Vibrio Cholerae
pdb|1XEA|D Chain D, Crystal Structure Of A Gfo/idh/moca Family Oxidoreductase
From Vibrio Cholerae
Length = 323
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 5 LKYH-EQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQ 59
L YH + LL ++D + W+ + L R+FGI +Y+ ++ L + Q
Sbjct: 188 LTYHXSEGLLARLD-VQWQTGDTLLHASXNRQFGITTEHVTASYDNVAYLFDSFTQ 242
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 19 ISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
I+WE N ++ ++ RR+G +K + Y+KLSR +R K
Sbjct: 25 ITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDK 70
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 54 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 100
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 75 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 121
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 74 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 120
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 74 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 120
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 58 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 104
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 23 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 69
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 53 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 99
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 34 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 80
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 18 FISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
FISW D ++ ++ RR+G +K + Y KLSR +R K
Sbjct: 83 FISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK 129
>pdb|3K2D|A Chain A, Crystal Structure Of Immunogenic Lipoprotein A From Vibrio
Vulnificus
pdb|3K2D|B Chain B, Crystal Structure Of Immunogenic Lipoprotein A From Vibrio
Vulnificus
Length = 237
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 47 YNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLM------GLIRTKWDL-ENCNK 99
Y+K + + LA ++ P DP + S LLE+ L+ GL+ T D+ EN
Sbjct: 92 YSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPKN 151
Query: 100 VTASSFCKRRLP 111
+T +LP
Sbjct: 152 ITIMELDAAQLP 163
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 19 ISWEADNNLHEV----KIMRRFGIQKRQDYTTYNKLSRLIR 55
I+WE + ++ ++ RR+G +K + Y+KLSR +R
Sbjct: 27 IAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR 67
>pdb|3I4H|X Chain X, Crystal Structure Of Cas6 In Pyrococcus Furiosus
Length = 273
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLD 65
W+ LHE+K++R K+ + +T+ LS + T+ +K K D
Sbjct: 116 WDERFYLHEIKVLRE---PKKFNGSTFVTLSPIAVTVVRKGKSYD 157
>pdb|3R66|A Chain A, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza Virus B, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
pdb|3R66|B Chain B, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza Virus B, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
pdb|3SDL|A Chain A, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza B Virus, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
pdb|3SDL|B Chain B, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza B Virus, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
Length = 113
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 35 RFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDP 69
RF Q+ DY ++L RL R L +IK + +P
Sbjct: 43 RFSWQRALDYPGQDRLHRLKRKLESRIKTHNKSEP 77
>pdb|1XEQ|A Chain A, Crystal Tructure Of Rna Binding Domain Of Influenza B
Virus Non- Structural Protein
pdb|1XEQ|B Chain B, Crystal Tructure Of Rna Binding Domain Of Influenza B
Virus Non- Structural Protein
Length = 103
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 35 RFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDP 69
RF Q+ DY ++L RL R L +IK + +P
Sbjct: 33 RFSWQRALDYPGQDRLHRLKRKLESRIKTHNKSEP 67
>pdb|3RT3|C Chain C, Complex Of Influenza Virus Protein With Host Anti-Viral
Factor
Length = 109
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 35 RFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDP 69
RF Q+ DY ++L RL R L +IK + +P
Sbjct: 33 RFSWQRALDYPGQDRLHRLKRKLESRIKTHNKSEP 67
>pdb|3PKM|A Chain A, Crystal Structure Of Cas6 With Its Substrate Rna
pdb|3PKM|X Chain X, Crystal Structure Of Cas6 With Its Substrate Rna
Length = 269
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLD 65
W+ LHE+K++R K+ + +T+ LS + T+ +K K D
Sbjct: 112 WDERFYLHEIKVLRE---PKKFNGSTFVTLSPIAVTVVRKGKSYD 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,061,413
Number of Sequences: 62578
Number of extensions: 133856
Number of successful extensions: 333
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 31
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)