BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13908
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T0M3|IMP3_BOVIN U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus
GN=IMP3 PE=2 SV=1
Length = 184
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 117/145 (80%), Gaps = 1/145 (0%)
Query: 1 MVRKLKYHEQKLLKKVDFISWE-ADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQ 59
MVRKLK+HEQKLLK+VDF++WE D+NLHE++++RR+ +Q+R+DYT YN+LSR +R LA+
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 60 KIKDLDPKDPFRVESSAKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKM 119
+++DL +DPFRV SSA LL+KLY +GL+ T+ E C+ VTASSFC+RRLP V+ + +M
Sbjct: 61 RLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 120 VQQLRLATQFIEQAHVRVGPELEGD 144
Q L+ A F+EQ HVRVGP++ D
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTD 145
>sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus
GN=Imp3 PE=2 SV=1
Length = 184
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 118/145 (81%), Gaps = 1/145 (0%)
Query: 1 MVRKLKYHEQKLLKKVDFISWE-ADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQ 59
MVRKLK+HEQKLLK+VDF++WE D+NLHE++++RR+ +Q+R++YT YN+LSR +R LA+
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELAR 60
Query: 60 KIKDLDPKDPFRVESSAKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKM 119
+++DL +DPFRV +SA LL+KLY MGL+ T+ LE C+ V+ASSFC+RRLP ++ + +M
Sbjct: 61 RLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRM 120
Query: 120 VQQLRLATQFIEQAHVRVGPELEGD 144
Q L+ A F+EQ HVRVGP++ D
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTD 145
>sp|Q9NV31|IMP3_HUMAN U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens
GN=IMP3 PE=1 SV=1
Length = 184
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 83/145 (57%), Positives = 117/145 (80%), Gaps = 1/145 (0%)
Query: 1 MVRKLKYHEQKLLKKVDFISWE-ADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQ 59
MVRKLK+HEQKLLK+VDF++WE D+NLHE++++RR+ +Q+R+DYT YN+LSR +R LA+
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 60 KIKDLDPKDPFRVESSAKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKM 119
+++DL +D FRV +SA LL+KLY +GL+ T+ LE C+ VTASSFC+RRLP V+ + +M
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 120 VQQLRLATQFIEQAHVRVGPELEGD 144
Q L+ A F+EQ HVRVGP++ D
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTD 145
>sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP3 PE=1
SV=1
Length = 183
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
MVRKLK+HEQKLLKKVDF+ W+ D + ++MR + IQ R+DY YN++ IR LA K
Sbjct: 1 MVRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANK 60
Query: 61 IKDLDPKDPFRVESSAKLLEKLYLMGLIRTKWDLENC-NKVTASSFCKRRLPVVMYRNKM 119
+ L P DPFR + LL+KLY MG++ TK + + NKVT S+ C+RRLPV+M+R KM
Sbjct: 61 LSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKM 120
Query: 120 VQQLRLATQFIEQAHVRVGPELEGD 144
+ ++ A +FIEQ HVRVGP L D
Sbjct: 121 AETIQDAVKFIEQGHVRVGPNLIND 145
>sp|O01513|YS4L_CAEEL Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans
GN=C48B6.2 PE=3 SV=1
Length = 183
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 91/144 (63%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
MVRKLK HEQKLLKK DF+SW+ D + ++R+F ++KR+ Y YN L+ R +A
Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADL 60
Query: 61 IKDLDPKDPFRVESSAKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMV 120
IK+L DPFR + + +L K Y GL+ T LE KVT +SF +RRLPVVM M
Sbjct: 61 IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMC 120
Query: 121 QQLRLATQFIEQAHVRVGPELEGD 144
+ ++ A+ +EQ HVR+G +L D
Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTD 144
>sp|O13835|IMP3_SCHPO U3 small nucleolar ribonucleoprotein protein imp3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp3 PE=3 SV=1
Length = 183
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 100/145 (68%), Gaps = 2/145 (1%)
Query: 2 VRKLKYHEQKLLKKVDFISWEADNNLH-EVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
+R LK+HEQKLL+KVDF++++ D+N H +V +MRR+ I KR++Y YN + R LA +
Sbjct: 1 MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60
Query: 61 IKDLDPKDPFRVESSAKLLEKLYLMGLIRTKWDLENC-NKVTASSFCKRRLPVVMYRNKM 119
+ LDP DPFR++ LLEKL+ MG++ +K + + NK S+ C+RRLPV+M + +M
Sbjct: 61 LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120
Query: 120 VQQLRLATQFIEQAHVRVGPELEGD 144
Q + AT+ IEQ HVRVGP + D
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITD 145
>sp|Q01688|YS4L_PNECA Putative 37S ribosomal protein S4-like (Fragment) OS=Pneumocystis
carinii GN=RBP PE=3 SV=1
Length = 169
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 2 VRKLKYHEQKLLKKVDFISWEADNNLH-EVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
+RKLKYHE+KLL K DF++++ D+N H +V ++RR+ I +R+DY YN+L L+ +A K
Sbjct: 1 MRKLKYHEKKLLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANK 60
Query: 61 IKDLDPKDPFRVESSAKLLEKLYLMGLIRTKWDLENC-NKVTASSFCKRRLPVVMYRNKM 119
+ L+P D F LL KL+ M L+ + L + NK+T S+FC+RRLPVVM R KM
Sbjct: 61 LSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKM 120
Query: 120 VQQLRLATQFIEQAHVRVGPELEGD 144
+ + + +++E HVRVGPE+ D
Sbjct: 121 CETVSTSVKYVEHGHVRVGPEVITD 145
>sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2
SV=1
Length = 197
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 29 EVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGL 87
E+K++ +G++ KR+ + LSR IR A+++ LD K+P R+ LL ++ GL
Sbjct: 29 ELKLVGEYGLRCKRELWRVQYTLSR-IRNAARELLTLDEKNPRRIFEGEALLRRMNRYGL 87
Query: 88 I-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPEL 141
+ T+ L+ +T +F +RRL +++++ M + + A I Q H+RVG +L
Sbjct: 88 LDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQL 142
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1
SV=1
Length = 185
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 29 EVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGLI 88
E+K++ FG++ + + IR A+++ LD KDP R+ + LL +L+ +G++
Sbjct: 24 ELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVM 83
Query: 89 -RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPEL 141
+K L+ + F +RRL ++++N + + + A I+ H+RVG +L
Sbjct: 84 EESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQL 137
>sp|Q9LXG1|RS91_ARATH 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1
SV=1
Length = 198
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 29 EVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGL 87
E+K++ +G++ KR+ + LSR IR A+ + LD K P R+ LL ++ GL
Sbjct: 29 ELKLVGEYGLRNKRELWRVQYSLSR-IRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGL 87
Query: 88 I-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPEL 141
+ ++ L+ +T +F +RRL +++++ M + + + I Q H+RVG +L
Sbjct: 88 LDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQL 142
>sp|A1RWT8|RS4_THEPD 30S ribosomal protein S4 OS=Thermofilum pendens (strain Hrk 5)
GN=rps4 PE=3 SV=1
Length = 172
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W + L E++++ +G++ +++ L R IR A+K+ L ++ ++E L+
Sbjct: 18 WRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEERIKLEKP--LVS 75
Query: 81 KLYLMGLIRTK-WDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
+LY MGL+ ++ L++ +T +RRL ++YR + +R A Q I H+ V
Sbjct: 76 RLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAV 133
>sp|A0B9L2|RS4_METTP 30S ribosomal protein S4 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps4 PE=3 SV=1
Length = 183
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVE-SSAKLL 79
WEAD +EV++++ +G++ +++ + R R + + + + R + +A ++
Sbjct: 18 WEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVI 77
Query: 80 EKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
+L G+++ DL+ + + +RRL +YR + +R A QFI H++V
Sbjct: 78 NRLSRFGILKDGADLDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQV 135
>sp|Q9YB58|RS4_AERPE 30S ribosomal protein S4 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps4 PE=3
SV=2
Length = 171
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 29 EVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGLI 88
E ++M R+G++ +++ L+R R A+ + L P+ R E+S L+E LY MGLI
Sbjct: 26 ERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPE--VRREASRVLVESLYRMGLI 83
Query: 89 -RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
D++ + A +RRL ++Y+ + + + A Q + H+ +
Sbjct: 84 DNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIA 134
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1
Length = 190
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
+EA E+K++ +G++ KR+ + LS+ IR A+++ LD KDP R+ L+
Sbjct: 17 FEAARLDSELKLVGEYGLRNKREVWRVLLTLSK-IRRAARELLTLDEKDPKRLFEGNALI 75
Query: 80 EKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+L +G++ ++ L+ + A F +RRL ++Y+ + + + A I Q H+RVG
Sbjct: 76 RRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVG 135
Query: 139 PEL 141
++
Sbjct: 136 KQI 138
>sp|A2BK77|RS4_HYPBU 30S ribosomal protein S4 OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=rps4 PE=3 SV=1
Length = 176
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 20 SWEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
W + + E++++ R+G++ +++ L+R R A+ + L P+ R + LL
Sbjct: 17 PWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPE--VREKEEKALL 74
Query: 80 EKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+L +G++ L++ +TA F +RRL ++Y+ + + + A Q I H+ +
Sbjct: 75 ARLNELGVLPENATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIA 133
>sp|A8MDS5|RS4_CALMQ 30S ribosomal protein S4 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=rps4 PE=3
SV=1
Length = 181
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W +D + E++++ +G++ +++ L R I+ A++I L R E+ +L +
Sbjct: 20 WNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREI--LSAPMEIRGEAEKRLKD 77
Query: 81 KLYLMGLIR-TKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
+L+ MGLI L++ + ++ +RRL ++YR M + + A Q I H+ +
Sbjct: 78 RLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISI 135
>sp|O15612|RS9_ENTHI 40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2
SV=2
Length = 185
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQK 60
M R L+ H + K + +E + E+K++ +FG++ +++ + + +RT+A+
Sbjct: 1 MGRCLRNHS--ITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKV 58
Query: 61 IKDLDPKDPFRVESSAKLLEKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKM 119
+ D KDP R+ A LL +L+ +G++ R + LE + + +RRL ++YR
Sbjct: 59 MLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGF 118
Query: 120 VQQLRLATQFIEQAHVRVGPEL 141
+ + A I ++VG ++
Sbjct: 119 AKSIHHARVLIRGKMIKVGKQV 140
>sp|A3DMQ4|RS4_STAMF 30S ribosomal protein S4 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps4 PE=3 SV=1
Length = 168
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W + + E+K++ +G++ +++ + R R A+ + L R ++ LL
Sbjct: 18 WRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSL--LAAPQEIREQAEKALLN 75
Query: 81 KLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+LY +GL+ LE+ +T +RRL ++Y+ + + + A Q I H+ +
Sbjct: 76 RLYRLGLLHENASLEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIA 133
>sp|Q8TVC0|RS4_METKA 30S ribosomal protein S4 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps4 PE=3 SV=1
Length = 186
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 20 SWEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
WEA+ +E K+MR++G++++++ + + R A+++ + DP L
Sbjct: 17 PWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKEL--MARTDPEAQREREALF 74
Query: 80 EKLYLMGLIRTKWD---LENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVR 136
KLY +G++ K + L++ ++T +RRL ++YR + + A Q + H+
Sbjct: 75 RKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIA 134
Query: 137 VG 138
+G
Sbjct: 135 IG 136
>sp|A8A8W3|RS4_IGNH4 30S ribosomal protein S4 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rps4 PE=3 SV=1
Length = 166
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 20 SWEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
W + + E+K+M +G++ +++ + R R A+++ L + R + LL
Sbjct: 17 PWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAE--VREKEEKALL 74
Query: 80 EKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
++LY +GL+ L++ +T +RRL V+Y+ + + + A Q + H+ +
Sbjct: 75 KRLYDLGLVDENATLDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAI 132
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3
SV=1
Length = 189
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
+E + E+K++ FG++ KR+ + L++ +R A+++ L+ KDP R+ LL
Sbjct: 19 FEKERLDQELKLIGTFGLKNKREVWRVKYTLAK-VRKAARELLTLEDKDPKRLFEGNALL 77
Query: 80 EKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
+L +G++ TK L+ + F +RRL +++ + + + A I+Q H+RV
Sbjct: 78 RRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRV 136
>sp|Q74NF7|RS4_NANEQ 30S ribosomal protein S4 OS=Nanoarchaeum equitans (strain Kin4-M)
GN=rps4 PE=3 SV=1
Length = 180
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W+ + E ++M+ +G++ +++ ++R R A+ + E + L
Sbjct: 15 WQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLT 74
Query: 81 KLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPE 140
KL +G++ +L++ +T +RRL ++ R + + ++ A QFI H+ V E
Sbjct: 75 KLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGE 134
Query: 141 L 141
+
Sbjct: 135 V 135
>sp|Q96YV8|RS4_SULTO 30S ribosomal protein S4 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=rps4 PE=3 SV=1
Length = 177
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 32 IMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGLI-RT 90
++ ++G++ +++ + R R A+ + L P + R +L++KLY MG+I +
Sbjct: 29 LIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKD 86
Query: 91 KWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
L++ + ++ +RRL ++Y+ + + + A Q I H+ +G
Sbjct: 87 NATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIG 134
>sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9B PE=1 SV=4
Length = 195
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
+E+ E+K+ FG++ KR+ Y +LS+ IR A+ + D KDP R+ L+
Sbjct: 19 YESSRLDAELKLAGEFGLKNKREIYRISFQLSK-IRRAARDLLTRDEKDPKRLFEGNALI 77
Query: 80 EKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+L +G++ K L+ + F +RRL +Y+ + + + A I Q H+ VG
Sbjct: 78 RRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVG 137
Query: 139 PEL 141
++
Sbjct: 138 KQI 140
>sp|Q0W1V5|RS4_UNCMA 30S ribosomal protein S4 OS=Uncultured methanogenic archaeon RC-I
GN=rps4 PE=3 SV=1
Length = 205
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLD-----PKDPFRVESS 75
W+ E +++++G++ ++ + R R+ A+ + + P+D + +
Sbjct: 18 WQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDA 77
Query: 76 AKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHV 135
+++KL +G+++ LE+ + +RRL ++YR ++ A QFI H+
Sbjct: 78 QNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHI 137
>sp|Q6KZP7|RS4_PICTO 30S ribosomal protein S4 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps4
PE=3 SV=1
Length = 183
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIK-DLDPKDPFRVESSAKLL 79
WE D E +++ ++G++ +++ + RT A+ ++ L DP ++ L+
Sbjct: 18 WEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLI 77
Query: 80 EKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
KL + L+ L++ + +RRL ++Y+ + ++ A QFI H++V
Sbjct: 78 GKLSRLNLLGENATLDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVN 136
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4
Length = 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 HEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMG 86
E+K++ +G++ KR+ + L++ IR A+++ LD KDP R+ LL +L +G
Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAK-IRKAARELLTLDEKDPRRLFEGNALLRRLVRIG 85
Query: 87 LI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
++ K L+ + F +RRL +++ + + + A I Q H+RV
Sbjct: 86 VLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 137
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 HEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMG 86
E+K++ +G++ KR+ + L++ IR A+++ LD KDP R+ LL +L +G
Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAK-IRKAARELLTLDEKDPRRLFEGNALLRRLVRIG 85
Query: 87 LI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
++ K L+ + F +RRL +++ + + + A I Q H+RV
Sbjct: 86 VLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 137
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3
Length = 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 HEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMG 86
E+K++ +G++ KR+ + L++ IR A+++ LD KDP R+ LL +L +G
Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAK-IRKAARELLTLDEKDPRRLFEGNALLRRLVRIG 85
Query: 87 LI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
++ K L+ + F +RRL +++ + + + A I Q H+RV
Sbjct: 86 VLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 137
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
Length = 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 HEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMG 86
E+K++ +G++ KR+ + L++ IR A+++ LD KDP R+ LL +L +G
Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAK-IRKAARELLTLDEKDPRRLFEGNALLRRLVRIG 85
Query: 87 LI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
++ K L+ + F +RRL +++ + + + A I Q H+RV
Sbjct: 86 VLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 137
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 HEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMG 86
E+K++ +G++ KR+ + L++ IR A+++ LD KDP R+ LL +L +G
Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAK-IRKAARELLTLDEKDPRRLFEGNALLRRLVRIG 85
Query: 87 LI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
++ K L+ + F +RRL +++ + + + A I Q H+RV
Sbjct: 86 VLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 137
>sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9a PE=1 SV=2
Length = 191
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 29 EVKIMRRFGIQKRQD-YTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGL 87
E+K+ +G++ + + + LS+ IR A+++ LD KDP R+ ++ +L +G+
Sbjct: 27 ELKLAGEYGLRNKHEIWRVALTLSK-IRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGI 85
Query: 88 I-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPEL 141
+ T+ L+ + F +RRL +++ + + + A I Q H+RVG ++
Sbjct: 86 LDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQI 140
>sp|Q5JJF2|RS4_PYRKO 30S ribosomal protein S4 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps4 PE=3 SV=1
Length = 180
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 77 KLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVR 136
+LL++LY +GL+ L++ +T +RRL ++YR + + ++ A Q I H+
Sbjct: 72 QLLQRLYRLGLLPADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIE 131
Query: 137 V 137
V
Sbjct: 132 V 132
>sp|O28000|RS4_ARCFU 30S ribosomal protein S4 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps4 PE=3 SV=1
Length = 172
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKI---KDLDPKDPFRVESSAK 77
W+ E++++ ++G++ +++ + + R R +A+ + L K+ ++ A+
Sbjct: 18 WDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQ 77
Query: 78 -LLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVR 136
+++KL MG++ L++ ++ F +RRL ++YR + + ++ A QFI H+
Sbjct: 78 TVIKKLNKMGILPENATLDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIA 137
Query: 137 V 137
V
Sbjct: 138 V 138
>sp|P39467|RS4_SULAC 30S ribosomal protein S4 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps4 PE=3 SV=3
Length = 176
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W N E ++ ++G++ +++ + R R A+ + L P + R +L++
Sbjct: 18 WIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAE--RNIREKQLIQ 75
Query: 81 KLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
KLY MG++ + L++ +T ++ +RRL ++Y+ + + + A Q I H+ +
Sbjct: 76 KLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAI 133
>sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9A PE=1 SV=3
Length = 197
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLL 79
+E+ E+K+ FG++ K++ Y +LS+ IR A+ + D KDP R+ L+
Sbjct: 19 YESSRLDAELKLAGEFGLKNKKEIYRISFQLSK-IRRAARDLLTRDEKDPKRLFEGNALI 77
Query: 80 EKLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
+L +G++ K L+ + F +RRL +Y+ + + + A I Q H+ VG
Sbjct: 78 RRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVG 137
Query: 139 PEL 141
++
Sbjct: 138 KQI 140
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9b PE=1 SV=3
Length = 192
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 29 EVKIMRRFGIQKRQD-YTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMGL 87
E+K+ +G++ + + + LS+ IR A+++ LD KDP R+ ++ +L +G+
Sbjct: 27 ELKLAGEYGLRNKHEIWRVALTLSK-IRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGI 85
Query: 88 I-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVGPEL 141
+ ++ L+ + F +RRL +++ + + + A I Q H+RVG ++
Sbjct: 86 LDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQI 140
>sp|Q12ZR5|RS4_METBU 30S ribosomal protein S4 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps4 PE=3 SV=1
Length = 184
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 21 WEADNNLHEVKIMRRFGIQ-KRQDYTTYNKLSRL---IRTLAQKIKDLDPKDPFRVESSA 76
W+A+ EV++++++G++ KR+ + + + L R R L + + D + E+
Sbjct: 18 WQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEAD- 76
Query: 77 KLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVR 136
+LL KL ++++ ++++ + + +RRL ++R + + R A QFI H+
Sbjct: 77 QLLTKLIRFSILKSDSNIDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIA 136
Query: 137 V 137
+
Sbjct: 137 I 137
>sp|C5A251|RS4_THEGJ 30S ribosomal protein S4 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps4 PE=3 SV=1
Length = 180
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 77 KLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVR 136
+LL++L+ +GL+ L++ +T +RRL ++Y+ + + +R A Q I H+
Sbjct: 72 QLLQRLHRLGLLPADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIE 131
Query: 137 VGPEL 141
V ++
Sbjct: 132 VNGQI 136
>sp|P55935|RS9_DROME 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=2
SV=2
Length = 195
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 28 HEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLMG 86
E+KI+ +G++ KR+ + L++ IR A+++ LD KD R+ LL +L +G
Sbjct: 28 QELKIIGEYGLRNKREVWRVKYALAK-IRKAARELLTLDEKDEKRLFQGNALLRRLVRIG 86
Query: 87 LI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
++ ++ L+ + F +RRL +++ + + + A I Q H+RV
Sbjct: 87 VLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 138
>sp|A9A436|RS4_NITMS 30S ribosomal protein S4 OS=Nitrosopumilus maritimus (strain SCM1)
GN=rps4 PE=3 SV=1
Length = 201
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 27 LHEVKIMRRFGIQ-KRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLEKLYLM 85
+ E+K + FG++ KR+ + + +LSR +R A+ + L + R E L++ L +
Sbjct: 24 MEELKTLGTFGLRTKRELWKAHTELSR-VRHQARSLLAL--RQEVRAEKEPILMKSLARI 80
Query: 86 GLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
GL+ + L++ +TA+ RRL ++ + + A Q + H+ +G
Sbjct: 81 GLVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIG 133
>sp|Q3IQT8|RS4_NATPD 30S ribosomal protein S4 OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=rps4 PE=3 SV=1
Length = 174
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 72 VESSAKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIE 131
E+ ++ L +L +G++ + L++ + + +RRL V YR + + A QFI
Sbjct: 69 AEAGSEFLARLKRIGVLDDEDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIA 128
Query: 132 QAHVRV 137
HV V
Sbjct: 129 HGHVTV 134
>sp|Q8TRR1|RS4_METAC 30S ribosomal protein S4 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps4 PE=3 SV=1
Length = 218
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKI-------KDLDPKDPFRVE 73
W+ EV++++ +G++ +++ + R+ R+ A+K+ ++ + +R +
Sbjct: 18 WQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQ 77
Query: 74 SSAKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQA 133
S ++L KL G+I++ ++++ + + +RRL + R + + + A QFI
Sbjct: 78 SE-EILSKLIRYGIIKSDANIDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHG 136
Query: 134 HVRV 137
H+ +
Sbjct: 137 HIAI 140
>sp|B6YSQ1|RS4_THEON 30S ribosomal protein S4 OS=Thermococcus onnurineus (strain NA1)
GN=rps4 PE=3 SV=1
Length = 180
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 76 AKLLEKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHV 135
A+LL++L +GL+ L++ +T RRL ++++ + + +R A Q I H+
Sbjct: 71 AQLLQRLNRLGLLPADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHI 130
Query: 136 RVGPEL 141
V ++
Sbjct: 131 EVNGQI 136
>sp|Q9HJD7|RS4_THEAC 30S ribosomal protein S4 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps4 PE=3 SV=1
Length = 199
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKD-LDPKDPFRVESSAKLL 79
WE + E KI+ ++G++ +++ L IR+ A+ ++ L D + +++
Sbjct: 18 WEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQKQLERMI 77
Query: 80 EKLYLMGLIRTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
++L L+ L++ +T + RRL +++R + +R A Q I H+ V
Sbjct: 78 KRLNRYKLLSENATLDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVA 136
>sp|C3N8R6|RS4_SULIY 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W + +E +++ ++G++ +++ + R R A+ + L P + R +L+
Sbjct: 18 WIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVG 75
Query: 81 KLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
KL MGL+ R +++ +T +RRL ++Y+ + A Q I H+ V
Sbjct: 76 KLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAV 133
>sp|C3NMQ2|RS4_SULIN 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=rps4 PE=3 SV=1
Length = 181
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W + +E +++ ++G++ +++ + R R A+ + L P + R +L+
Sbjct: 18 WIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVG 75
Query: 81 KLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
KL MGL+ R +++ +T +RRL ++Y+ + A Q I H+ V
Sbjct: 76 KLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAV 133
>sp|C3MZ03|RS4_SULIM 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W + +E +++ ++G++ +++ + R R A+ + L P + R +L+
Sbjct: 18 WIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVG 75
Query: 81 KLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
KL MGL+ R +++ +T +RRL ++Y+ + A Q I H+ V
Sbjct: 76 KLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAV 133
>sp|C3MJP5|RS4_SULIL 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W + +E +++ ++G++ +++ + R R A+ + L P + R +L+
Sbjct: 18 WIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVG 75
Query: 81 KLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
KL MGL+ R +++ +T +RRL ++Y+ + A Q I H+ V
Sbjct: 76 KLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAV 133
>sp|C4KJ91|RS4_SULIK 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=rps4 PE=3 SV=1
Length = 181
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 WEADNNLHEVKIMRRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDPFRVESSAKLLE 80
W + +E +++ ++G++ +++ + R R A+ + L P + R +L+
Sbjct: 18 WIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVG 75
Query: 81 KLYLMGLI-RTKWDLENCNKVTASSFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRV 137
KL MGL+ R +++ +T +RRL ++Y+ + A Q I H+ V
Sbjct: 76 KLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAV 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,037,385
Number of Sequences: 539616
Number of extensions: 1732677
Number of successful extensions: 5299
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 5164
Number of HSP's gapped (non-prelim): 135
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)