RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13908
         (149 letters)



>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 31.4 bits (71), Expect = 0.013
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 17 DFISWEADNN----LHEVKIMRRFGIQKRQDYTTYNKLSRLIRT 56
            I+WE  N         ++ RR+G +K +    Y+KLSR +R 
Sbjct: 23 SCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRY 66


>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
          SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 30.3 bits (68), Expect = 0.046
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 17 DFISWEADNN----LHEVKIMRRFGIQKRQDYTTYNKLSRLIRT 56
            I W +++     L   ++ R +GI+K +    Y+KLSR +R 
Sbjct: 21 HMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRY 64


>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 110

 Score = 28.7 bits (64), Expect = 0.12
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 17 DFISWEADNN----LHEVKIMRRFGIQKRQDYTTYNKLSRLIR 55
          D ISW  D           + +++G +K +    Y KLSR +R
Sbjct: 18 DCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60


>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 142

 Score = 28.7 bits (64), Expect = 0.15
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 17  DFISWEADNN----LHEVKIMRRFGIQKRQDYTTYNKLSRLIRT 56
            FISW  D          ++ RR+G +K +    Y KLSR +R 
Sbjct: 57  SFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY 100


>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of
          nonstructural protein NS1 {Influenza B virus [TaxId:
          11520]}
          Length = 89

 Score = 28.1 bits (62), Expect = 0.18
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 34 RRFGIQKRQDYTTYNKLSRLIRTLAQKIKDLDPKDP 69
           RF  Q+  DY   ++L RL R L  +IK  +  +P
Sbjct: 18 ERFSWQRALDYPGQDRLHRLKRKLESRIKTHNKSEP 53


>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
          transcription SPDEF {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 27.5 bits (61), Expect = 0.24
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 17 DFISWEADNN-----LHEVKIMRRFGIQKRQDYTTYNKLSRLIR 55
           FI W              ++ R +GI+K +    Y+KLSR IR
Sbjct: 21 RFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIR 64


>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 86

 Score = 26.7 bits (59), Expect = 0.45
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 17 DFISWEADNN-----LHEVKIMRRFGIQKRQDYTTYNKLSRLIRT 56
            ISW + +      +   ++ R +G++K +    Y+KLSR +R 
Sbjct: 18 HIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRY 62


>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 94

 Score = 24.8 bits (54), Expect = 2.9
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 17 DFISWEADNN-----LHEVKIMRRFGIQKRQDYTTYNKLSRLIR 55
            + WE         +    + + +G +K+ D  TY KLSR +R
Sbjct: 20 GILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR 63


>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
           [TaxId: 549]}
          Length = 456

 Score = 25.1 bits (54), Expect = 4.5
 Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 5/31 (16%)

Query: 109 RLPVVMYRNKMVQQLRLATQ-----FIEQAH 134
             P   +R K V+ + + ++      +++A 
Sbjct: 2   NYPAEPFRIKSVETVSMISRDERVKKMQEAG 32


>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli
           [TaxId: 562]}
          Length = 204

 Score = 24.8 bits (54), Expect = 4.5
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 104 SFCKRRLPVVMYRNKMVQQLRLATQFIEQAHVRVG 138
           +  + RL  V+YR         A Q +    + V 
Sbjct: 90  ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 124


>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine
          phosphoribosyltransferase PH0095 {Pyrococcus horikoshii
          [TaxId: 53953]}
          Length = 153

 Score = 24.0 bits (51), Expect = 8.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 44 YTTYNKLSRLIRTLAQKIKDLDP 66
          Y T+ ++ R I  LA+K+++  P
Sbjct: 5  YLTWWQVDRAIFALAEKLREYKP 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,373
Number of extensions: 24815
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 17
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)