BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13909
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 167/224 (74%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGV +FRTICSSVDKLDK SWE+V+ EM EKGL+ +AD+IG YVQQHG
Sbjct: 227 ILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 286
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ +QD L +K AL GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 287 GVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 346
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE VGSVA GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E
Sbjct: 347 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 406
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+L A K+RTTE QV VASAQK LLEER+++ S LW GI A+
Sbjct: 407 RLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 450
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
K LKTPKGTRDY P M +R+ V + II FKRHGA+ IDTPV
Sbjct: 64 KFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPV 107
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 167/224 (74%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGV +FRTICSSVDKLDK SWE+V+ EM EKGL+ +AD+IG YVQQHG
Sbjct: 174 ILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 233
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ +QD L +K AL GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 234 GVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 293
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE VGSVA GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E
Sbjct: 294 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 353
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+L A K+RTTE QV VASAQK LLEER+++ S LW GI A+
Sbjct: 354 RLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 397
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+ LKTPKGTRDY P M +R+ V + II FKRHGA+ IDTPV
Sbjct: 11 QFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPV 54
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 12/221 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G F+S + Q ++ S +D L+K V+ E+ +E G++ KI +V+ G
Sbjct: 189 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKE-GINPEQTQKIIDFVKIDG 247
Query: 169 H-KELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDK-VIFDLSLARGLDYYT 225
++++K L S+ +G++ ++ +++ + DK DL++ARGL+YYT
Sbjct: 248 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYT 307
Query: 226 GIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
G +YE LIG E++GS+ GGRY++LVG F + P VGISIG+ R+ S +
Sbjct: 308 GTVYETTLIGH----EALGSICSGGRYEELVGTFIGEK--XPGVGISIGLTRLISRLLK- 360
Query: 286 LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGIN 326
A L T QV V + Q L +++ L + G+N
Sbjct: 361 -AGILNTLPPTPAQVVVVNXQDELXPTYLKVSQQLRQAGLN 400
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L + E GV A +F +C VDK++K E+V ++ GL + D I +
Sbjct: 192 ILQTVVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAA-IGLESNVVDAITSTLSLKT 250
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
E+ ++ ++ + ++ ++ + Y D VIFD S+ RGL YYTGI+
Sbjct: 251 IDEIAQRIGEEH---------EAVRELRDFITQIEAYGFGDWVIFDASVVRGLAYYTGIV 301
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
+E DR + ++ GGGRYD L+ + VPCVG G I L+ K
Sbjct: 302 FEGF---DRDG--NFRALCGGGRYDNLLTTYG-SPTAVPCVGFGFGDCVIVELLNEK 352
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+G RD+ PE M LRK + + S ++ G + D+PV
Sbjct: 33 QGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPV 69
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L + E GV + +F +C VDK++K E+V ++ GL + D I +
Sbjct: 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAV-LGLEPTVVDAITTTLSLKS 250
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
E+ ++ ++ + ++ + Y D V+FD S+ RGL YYTGI+
Sbjct: 251 IDEIAQRVGEEH---------EAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIV 301
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
+E DR+ ++ GGGRYD L+ + +PC G G I L++ K
Sbjct: 302 FEGF---DREG--KFRALCGGGRYDNLLTTYG-SPTPIPCAGFGFGDCVIVELLQEK 352
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+G RD+ PE M R+++ + + K G + D PV
Sbjct: 33 QGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPV 69
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 11/79 (13%)
Query: 208 TDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGS-VAGGGRYDKLVGMFDPRQRNV 266
+D V FDL+L R LDYYTG+++E G VG+ +A GGRYD+L+ F
Sbjct: 298 SDVVTFDLALHRELDYYTGLVFEMFAPG-------VGAPIAQGGRYDELLAQFGA---GA 347
Query: 267 PCVGISIGVERIFSLIESK 285
P VG + VER+ +++E++
Sbjct: 348 PAVGFAFEVERVMAVLEAQ 366
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 177 MQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGD 236
+ D L + S+ GL KLL S Y + +++ RGLDYY ++E V
Sbjct: 224 LGDYLDEESREHFAGLC--KLLESAGIAYTVNQRLV------RGLDYYNRTVFEWVT--- 272
Query: 237 RKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
S G+V GGRYD LV R P VG ++G+ER+ L+++
Sbjct: 273 -NSLGSQGTVCAGGRYDGLVEQLGGRA--TPAVGFAMGLERLVLLVQA 317
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 177 MQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGD 236
+ D L + S+ GL KLL S Y + +++ RGLDYY ++E V
Sbjct: 225 LGDYLDEESREHFAGLC--KLLESAGIAYTVNQRLV------RGLDYYNRTVFEWVT--- 273
Query: 237 RKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
S G+V GGRYD LV R P VG ++G+ER+ L+++
Sbjct: 274 -NSLGSQGTVCAGGRYDGLVEQLGGRA--TPAVGFAMGLERLVLLVQA 318
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 183 KTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGES 242
K+S+ A LL SY V +D S+ RGL YYTGI++EA DR
Sbjct: 234 KSSEEIARXAAVEDLLASYG-----VKNVRYDFSIVRGLSYYTGIVFEAY---DRSG--Q 283
Query: 243 VGSVAGGGRYDKLVGMFDPRQRNVPCVGISIG 274
++ GGGRYD L + +VP VG G
Sbjct: 284 FRAILGGGRYDNLASLXSG--ESVPAVGFGXG 313
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 177 MQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGD 236
+ D L + S+ GL KLL S Y + +++ RGLDYY ++E V
Sbjct: 232 LGDYLDEESREHFAGLC--KLLESAGIAYTVNQRLV------RGLDYYNRTVFEWVT--- 280
Query: 237 RKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
S G+V GGRYD LV R P VG ++G+ER+ L+++
Sbjct: 281 -NSLGSQGTVCAGGRYDGLVEQLGGRA--TPAVGFAMGLERLVLLVQA 325
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Query: 217 LARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVE 276
L RGLDYY ++E V K + G+VA GGRYD L+ + G ++G+E
Sbjct: 284 LVRGLDYYNLTVFEWVT----DKLGAQGTVAAGGRYDPLIEQLG--GKPTAACGWAMGIE 337
Query: 277 RIFSLI-ESKLAAERTKLRTTEVQVYV------ASAQKNLLEERMR 315
RI L+ E L E+ V VYV A Q ++ ER+R
Sbjct: 338 RILELLKEEHLVPEQEG-----VDVYVVHQGDAAREQAFIVAERLR 378
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 14/74 (18%)
Query: 216 SLARGLDYYTGIIYEAVLIGDRKKGESVGS---VAGGGRYDKLVGMFD-PRQRNVPCVGI 271
+L RGLDYY +E E +G+ + GGGRYD L + PR VP VG
Sbjct: 256 ALVRGLDYYVRTAFEV-------HHEEIGAQSALGGGGRYDGLSELLGGPR---VPGVGF 305
Query: 272 SIGVERIFSLIESK 285
+ GVER+ +E++
Sbjct: 306 AFGVERVALALEAE 319
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 20/158 (12%)
Query: 131 VDKLDKWSWED--VRY-EMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKS 187
D+L ++ +E V Y E + LS I ++ + G + +E+ L++T K
Sbjct: 185 ADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLXNLLSLRGGRAAIEE--ARGLIQTEKG 242
Query: 188 ALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVG-SV 246
LA L + Y ++ V FDL+L YYTG+++E G +G +
Sbjct: 243 K-TALAEXTKLYEVLESYGASEYVKFDLTLVLHXSYYTGVVFEGY-------GNRLGVPL 294
Query: 247 AGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
GGRYD+L+ F + P GV RI L+E+
Sbjct: 295 CSGGRYDELLSKF-----HRPAQATGFGV-RIDLLVEA 326
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 214 DLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFD 260
D +L RGLDYYT +E ++ G ++ ++ GGGRY+ L+ + D
Sbjct: 252 DPNLVRGLDYYTHTAFELMMDNPNYDG-AITTLCGGGRYNGLLELLD 297
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 197 LLLSYCDIYELTDK------VIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGG 250
L+ S+ + E ++K +I DL + +DYYT ++++A + + GG
Sbjct: 252 LISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAY------SSAANQPILSGG 305
Query: 251 RYDKLVGMFDPRQRNVPCVGISIGVERIFSLIE 283
RYD+L+ F Q +G ++ I +E
Sbjct: 306 RYDQLLSNF---QEEAFAIGFCCHMDTILKALE 335
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVI---FDLSLARGLDYYT 225
H EL+ ++ ++KT K V LA + + C+ Y + + I +S Y
Sbjct: 9 HSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYAL 68
Query: 226 GIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
++++ + G K VGS +G L F R V C G IG++ I L++
Sbjct: 69 ELLFDQLHEG--AKALDVGSGSG-----ILTACF---ARMVGCTGKVIGIDHIKELVDDS 118
Query: 286 LAAER----TKLRTTEVQVYVASAQKNLLEE 312
+ R T L + VQ+ V + EE
Sbjct: 119 VNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE 149
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
pdb|1NY3|A Chain A, Crystal Structure Of Adp Bound To Map Kap Kinase 2
Length = 400
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 113 LFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGI 162
+ +S VP T S V K DK WEDV+ EMT ++ ++I I
Sbjct: 325 IMQSTKVPQTPLHT--SRVLKEDKERWEDVKEEMTSALATMRVDYEQIKI 372
>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
Length = 406
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 113 LFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGI 162
+ +S VP T S V K DK WEDV+ EMT ++ ++I I
Sbjct: 331 IMQSTKVPQTPLHT--SRVLKEDKERWEDVKEEMTSALATMRVDYEQIKI 378
>pdb|2OZA|A Chain A, Structure Of P38alpha Complex
Length = 356
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 113 LFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGI 162
+ +S VP T S V K DK WEDV+ EMT ++ ++I I
Sbjct: 281 IMQSTKVPQTPLHT--SRVLKEDKERWEDVKEEMTSALATMRVDYEQIKI 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,001,991
Number of Sequences: 62578
Number of extensions: 353204
Number of successful extensions: 1170
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 36
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)