BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13909
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KI84|SYHC_BOVIN Histidine--tRNA ligase, cytoplasmic OS=Bos taurus GN=HARS PE=2 SV=1
Length = 509
Score = 277 bits (708), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 168/224 (75%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGVP +FRTICSSVDKLDK SWE+V+ EM EKGL+ +AD+IG YVQQHG
Sbjct: 216 ILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 275
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ +QD L +K AL GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 276 GVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVI 335
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE VGSVA GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E
Sbjct: 336 YEAVLLQPPARAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 395
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+L A K+RTTE QV VASAQK LLEER+++ S LW GI A+
Sbjct: 396 RLEALEEKVRTTETQVLVASAQKKLLEERLKLISELWDAGIKAE 439
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 2 DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYD 61
DR + + ++ Q + +R LK + E +++E+ KL +LK++L
Sbjct: 3 DRAALEDLVRVQGERVRGLKQ-QKASAEQIEEEVAKLLKLKAQLGPDEGKP--------- 52
Query: 62 QVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
K LKTPKGTRDY P M +R+ V + IIS FKRHGA+ IDTPV
Sbjct: 53 --KFVLKTPKGTRDYSPRQMAVREKVFDVIISCFKRHGAEVIDTPV 96
>sp|Q61035|SYHC_MOUSE Histidine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Hars PE=2
SV=2
Length = 509
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/224 (61%), Positives = 168/224 (75%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGVP +FRTICSSVDKLDK SWE+V+ EM EKGL+ +AD+IG YVQQHG
Sbjct: 216 ILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 275
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ +QD L +K A+ GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 276 GVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFGIDDKISFDLSLARGLDYYTGVI 335
Query: 229 YEAVLIG-DRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE VGS+A GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E
Sbjct: 336 YEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 395
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+L A K+RTTE QV VASAQK LLEER+++ S LW GI A+
Sbjct: 396 RLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 439
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 12/106 (11%)
Query: 2 DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYD 61
DR + ++ Q +R LK+ + E +++E+ KL +LK++L +
Sbjct: 3 DRAALEELVRLQGAHVRGLKE-QKASAEQIEEEVTKLLKLKAQLGQDEGKQ--------- 52
Query: 62 QVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
K LKTPKGTRDY P M +R+ V + II FKRHGA+ IDTPV
Sbjct: 53 --KFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPV 96
>sp|P70076|SYHC_TAKRU Histidine--tRNA ligase, cytoplasmic OS=Takifugu rubripes GN=hars
PE=3 SV=1
Length = 519
Score = 274 bits (700), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 136/234 (58%), Positives = 166/234 (70%), Gaps = 14/234 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGVP FRTICS+VDKLDK WE V+ EM EKGLS+ AD+IG+YV G
Sbjct: 221 ILDGMFAVCGVPDNMFRTICSTVDKLDKLPWEAVKNEMVNEKGLSEEAADQIGVYVGMQG 280
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
+L E+ +QD + S A GL IKLL SY ++++TDKV+FDLSLARGLDYYTGII
Sbjct: 281 GMDLAERLLQDQKMCQSTQACAGLTDIKLLFSYLQLFQVTDKVVFDLSLARGLDYYTGII 340
Query: 229 YEAVL-------IGDRKKGES-------VGSVAGGGRYDKLVGMFDPRQRNVPCVGISIG 274
YEA+L + E+ VGSVAGGGRYD LVGMFDP+ R VPCVG+SIG
Sbjct: 341 YEAILTQAGVAPVAPETSNEAPTEECVTVGSVAGGGRYDGLVGMFDPKGRKVPCVGVSIG 400
Query: 275 VERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+ERIFS++E K A K+RTTEVQV VA+AQKNLLEER+R+ + LW GI A+
Sbjct: 401 IERIFSIMEQKAEASTEKIRTTEVQVMVAAAQKNLLEERLRLITELWNAGIKAE 454
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+ LKT KGTRDY P+ M +R+ V I+S FKRHGA+TIDTPV
Sbjct: 58 QFVLKTAKGTRDYNPKQMAIREKVFNTIVSCFKRHGAETIDTPV 101
>sp|Q5R4R2|SYHC_PONAB Histidine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=HARS PE=2
SV=1
Length = 509
Score = 274 bits (700), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 167/224 (74%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGV +FRTICSSVDKLDK SWE+V+ EM EKGL+ +AD+IG YVQQHG
Sbjct: 216 ILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 275
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ +QD L SK AL GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 276 GVSLVEQLLQDPKLSQSKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 335
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE VGSVA GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E
Sbjct: 336 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 395
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+L A K+RTTE QV VASAQK LLEER+++ S LW GI A+
Sbjct: 396 RLEALEEKVRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 439
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 12/98 (12%)
Query: 10 IKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKT 69
+K Q + +R LK + E++++E+ KL +LK++L + K LKT
Sbjct: 11 VKLQGERVRGLKQ-QKASAELIEEEVAKLLKLKAQLGPDESKQ-----------KFVLKT 58
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
PKGTRDY P M +R+ V + II FKRHGA+ IDTPV
Sbjct: 59 PKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPV 96
>sp|P12081|SYHC_HUMAN Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1
SV=2
Length = 509
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 167/224 (74%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGV +FRTICSSVDKLDK SWE+V+ EM EKGL+ +AD+IG YVQQHG
Sbjct: 216 ILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 275
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ +QD L +K AL GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 276 GVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 335
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE VGSVA GGRYD LVGMFDP+ R VPCVG+SIGVERIFS++E
Sbjct: 336 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 395
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+L A K+RTTE QV VASAQK LLEER+++ S LW GI A+
Sbjct: 396 RLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 439
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 12/98 (12%)
Query: 10 IKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKT 69
+K Q + +R LK + E++++E+ KL +LK++L + K LKT
Sbjct: 11 VKLQGERVRGLKQ-QKASAELIEEEVAKLLKLKAQLGPDESKQ-----------KFVLKT 58
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
PKGTRDY P M +R+ V + II FKRHGA+ IDTPV
Sbjct: 59 PKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPV 96
>sp|Q5R5E5|SYHM_PONAB Probable histidine--tRNA ligase, mitochondrial OS=Pongo abelii
GN=HARS2 PE=2 SV=1
Length = 506
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 126/224 (56%), Positives = 166/224 (74%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
++DG+F CGVP +FR ICSS+DKLDK +W+DVR+EM +KGL+ +AD+IG YVQ HG
Sbjct: 217 IVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEVADRIGDYVQCHG 276
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ QD L +K AL GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 277 GVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVI 336
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE +VGSVA GGRYD LVGMFDP+ VPCVG+SIGVERIF ++E
Sbjct: 337 YEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVGMFDPKGHKVPCVGLSIGVERIFYIVEQ 396
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
++ + K+RTTE QV+VA+ QKN L+ER+++ + LW +GI A+
Sbjct: 397 RMKTKGEKVRTTETQVFVATPQKNFLQERLKLIAELWNSGIKAE 440
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 61 DQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
++ +KTPKGTRD P+ MV+R+ +L+ +IS FKRHGA+ +DTP
Sbjct: 51 EKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAKGMDTPA 97
>sp|P49590|SYHM_HUMAN Probable histidine--tRNA ligase, mitochondrial OS=Homo sapiens
GN=HARS2 PE=1 SV=1
Length = 506
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 126/224 (56%), Positives = 166/224 (74%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
++DG+F CGVP +FR ICSS+DKLDK +W+DVR+EM +KGL+ +AD+IG YVQ HG
Sbjct: 217 IVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEVADRIGDYVQCHG 276
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ QD L +K AL GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 277 GVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVI 336
Query: 229 YEAVLI-GDRKKGE---SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ + GE +VGSVA GGRYD LVGMFDP+ VPCVG+SIGVERIF ++E
Sbjct: 337 YEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVGMFDPKGHKVPCVGLSIGVERIFYIVEQ 396
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
++ + K+RTTE QV+VA+ QKN L+ER+++ + LW +GI A+
Sbjct: 397 RMKTKGEKVRTTETQVFVATPQKNFLQERLKLIAELWDSGIKAE 440
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 61 DQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
++ +KTPKGTRD P+ MV+R+ +L+ +IS FKRHGA+ +DTP
Sbjct: 51 EKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAKGMDTPA 97
>sp|A5D7V9|SYHM_BOVIN Probable histidine--tRNA ligase, mitochondrial OS=Bos taurus
GN=HARS2 PE=2 SV=1
Length = 506
Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/224 (57%), Positives = 162/224 (72%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGVP +F ICSSVDKLDK SW+DVR+EM +KGL+ +AD+IG YVQ HG
Sbjct: 217 ILDGIFAVCGVPESKFHAICSSVDKLDKISWKDVRHEMVVKKGLAPEVADRIGDYVQCHG 276
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ QD L +K AL GL +KLL Y ++ + +KV FDLSLARGLDYYTG+I
Sbjct: 277 GISLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGVAEKVSFDLSLARGLDYYTGVI 336
Query: 229 YEAVLIGDRKKGE----SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ E ++GSVA GGRYD LVGMFDPR VPCVG+SIGVERIFS++E
Sbjct: 337 YEAVLLQTPVHAEEEPLNMGSVAAGGRYDGLVGMFDPRGHKVPCVGLSIGVERIFSIVEQ 396
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
++ K+RTTE QV+VA+ QKN L+ER+++ + LW GI A+
Sbjct: 397 RIKTFGEKIRTTETQVFVATPQKNFLQERLKLIAELWDAGIKAE 440
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 61 DQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
++ T+KTPKGTRD P+ MV+R+ +L+ ++S FKRHGA+ +DTP
Sbjct: 51 EKSNFTIKTPKGTRDLSPQQMVVREKILDVVVSCFKRHGAKGLDTPA 97
>sp|Q99KK9|SYHM_MOUSE Probable histidine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Hars2 PE=2 SV=1
Length = 505
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/224 (55%), Positives = 159/224 (70%), Gaps = 4/224 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
++DG+F CGVP + RTICSS+DKLDK SWE VR+EM +KGL+ +AD+IG +VQ HG
Sbjct: 216 VVDGIFAVCGVPESKLRTICSSMDKLDKMSWEGVRHEMVAKKGLAPEVADRIGDFVQYHG 275
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE +D L S+ AL GL +KLL Y ++ + DK+ DLSLARGLDYYTG+I
Sbjct: 276 GISLVEDLFKDPRLSQSQLALQGLGDLKLLFEYLRLFGIADKISLDLSLARGLDYYTGVI 335
Query: 229 YEAVLIGDR----KKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284
YEAVL+ K+ SVGSVA GGRYD LV FDP+ +VPCVG+SIGVERIF L+E
Sbjct: 336 YEAVLLESPAQAGKETLSVGSVAAGGRYDNLVAQFDPKGHHVPCVGLSIGVERIFYLVEQ 395
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
K+ K+RTTE QV+VA+ QKN L+ER++I + LW GI A+
Sbjct: 396 KMKMSGEKVRTTETQVFVATPQKNFLQERLKIIAELWDAGIKAE 439
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 52 TVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
T E+ ++ +K PKGTRD P+ MV+R+ +L++IIS FKRHGA+ +DTP
Sbjct: 41 TSEQLKSHQEKPNFVIKVPKGTRDLSPQQMVVREKILDKIISCFKRHGAKGLDTPA 96
>sp|P07178|SYHC_MESAU Histidine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=HARS
PE=2 SV=1
Length = 508
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 154/223 (69%), Gaps = 3/223 (1%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGVP +FRTICSSVDKLDK SWE+V+ EM EKGL+ +AD+IG YVQQHG
Sbjct: 216 ILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 275
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
LVE+ +QD L +K A+ GL +KLL Y ++ + DK+ FDLSLARGLDYYTG+I
Sbjct: 276 EVCLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 335
Query: 229 YEAVLIG-DRKKGES--VGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
Y AVL+ GE G RYD LVGMFDP+ R VPCVG+SIGVERIFS++E +
Sbjct: 336 YVAVLLQMPTGAGEEPWCGQCGCWRRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQR 395
Query: 286 LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
L A K+RTTE QV VASAQK L + C LW GI A+
Sbjct: 396 LEALEEKVRTTETQVLVASAQKKLAGGETKACLQLWDAGIKAE 438
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 22/105 (20%)
Query: 3 RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQ 62
R R++ +K+Q+ + + +++E+ KL +LK++L HD E Q
Sbjct: 14 RHRLVRGLKQQK-----------ASADQIEEEVAKLLKLKAQL---------GHD-ESKQ 52
Query: 63 VKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
K LKTPKGTRDY P M +R+ V + II FKRHGA+ IDTPV
Sbjct: 53 -KFVLKTPKGTRDYSPRQMAVREKVFDVIICCFKRHGAEVIDTPV 96
>sp|Q86AS6|SYHC_DICDI Histidine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=hisS PE=3 SV=1
Length = 481
Score = 207 bits (527), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 145/221 (65%), Gaps = 7/221 (3%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LLD +F CGVPA +FR ICS+VDKLDK WE+VR EM + K L +ADKI +V
Sbjct: 199 LLDAIFAICGVPADKFRAICSAVDKLDKSPWEEVRKEMVEVKALDGAVADKIEKFVSLKD 258
Query: 169 HK-ELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGI 227
+L++ + +K A L+ ++ L Y + + +T ++FDLSLARGLDYYTGI
Sbjct: 259 EPIKLLQHLRATGMCDGNKDATEALSQLETLFGYLECFGVTQHILFDLSLARGLDYYTGI 318
Query: 228 IYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLA 287
IYEAVL G + VGS+A GGRYD LVGM+ +++VP VG SIG+ERIF+++E +
Sbjct: 319 IYEAVLTGQ----DRVGSIAAGGRYDGLVGMYG--KKDVPAVGFSIGIERIFTILEDEYK 372
Query: 288 AERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
E K+R QV+V +K+L++ER+ I S LWK GINA+
Sbjct: 373 KENKKIRENATQVFVVQMEKDLIKERLAIVSELWKAGINAE 413
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
K+ LKTPKGT+DY P M +R+ V + I VFKRHGA TI+TPV
Sbjct: 36 KVQLKTPKGTQDYNPRQMTIREQVFDGIKQVFKRHGAVTIETPV 79
>sp|O43011|SYH_SCHPO Histidine--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hts1 PE=1 SV=2
Length = 563
Score = 205 bits (521), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 149/247 (60%), Gaps = 29/247 (11%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F CGVP + RTI S+VDKLDK WEDVR EM EKGL + +ADKI YV G
Sbjct: 249 ILDGIFTVCGVPDDKIRTISSAVDKLDKLPWEDVRREMVVEKGLKEEVADKIKEYVLLKG 308
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
+ L++K D LL ++ SA+ ++LL Y + + + D+ FD+SLARGLDYYTGII
Sbjct: 309 DRSLLDKLEADSLLSSNSSAVAAFNDMRLLFDYLEAFGVLDRFSFDMSLARGLDYYTGII 368
Query: 229 YEAVL-------------------IGDRKKGES--VGSVAGGGRYDKLVGMFDPRQR-NV 266
YEAV DR +S VGS+A GGRYD LVGMF ++ +
Sbjct: 369 YEAVTEASAPKIKSSAEKKKSADPEADRSNDDSIGVGSIAAGGRYDNLVGMFAAKKNAKI 428
Query: 267 PCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVAS-----AQKNLLEERMRICSYLW 321
PCVGIS+G+ERIFS++ SK+ E +R +V V+V + L+ERM +C LW
Sbjct: 429 PCVGISLGLERIFSILRSKIPDE--DIRANDVDVFVMAFGGGKEWTGFLKERMSVCKDLW 486
Query: 322 KNGINAD 328
NGI A+
Sbjct: 487 ANGIKAE 493
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLL 110
TLKTPKGT+D+ + +VLR+++ + +FKRHG T+DTPV L
Sbjct: 86 FTLKTPKGTKDWCDKDVVLREHIFSTVTEIFKRHGGVTLDTPVFEL 131
>sp|P93422|SYH_ORYSJ Histidine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os05g0150900 PE=2 SV=2
Length = 788
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 10/222 (4%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LLDG+ E CGVP ++FRT+CSS+DKLDK ++E V+ E+ EKG+S ADKIG V+ G
Sbjct: 511 LLDGMLEICGVPPEKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNETADKIGDLVKTRG 570
Query: 169 H--KELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
+ L+E + + ++ L +++L D K++FDLSLARGLDYYTG
Sbjct: 571 PPLEVLLELRKEGSKFMGNAGSVTALNELEILFKALDKANAIGKIVFDLSLARGLDYYTG 630
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKL 286
+IYEAV G + VGS+A GGRYD LVGMF +Q VP VG+S+G+ER+F+++E +
Sbjct: 631 VIYEAVFKGTTQ----VGSIAAGGRYDNLVGMFSGKQ--VPAVGVSLGIERVFAIMEQQ- 683
Query: 287 AAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
E+ ++R TE +V V+ K+L+ + S LW GI A+
Sbjct: 684 EMEKNQIRATETEVLVSIIGKDLILA-AELVSELWNAGIKAE 724
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 14 RDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEE--HDVEYDQVKLTLKTPK 71
RD++ K+++ N ++ + +L L C + V++ VE ++V+ K PK
Sbjct: 298 RDLVTNGKEVLSVNSALLAEWGTELSLLFDPKCPRLVSLVDKVKEIVETNEVRRLPKIPK 357
Query: 72 GTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
GTRD+G E M +R++ I VFK HGA ++DTPV
Sbjct: 358 GTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPV 393
>sp|P34183|SYH_CAEEL Histidine--tRNA ligase OS=Caenorhabditis elegans GN=hrs-1 PE=2 SV=3
Length = 521
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 23/238 (9%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQH- 167
+L+G+F G+PAK F+TICSSVDKLDK WEDV EM EK L+K K+G V+
Sbjct: 223 ILEGMFAVSGIPAKDFKTICSSVDKLDKTPWEDVEQEMINEKFLTKEQTGKLGELVRFRE 282
Query: 168 -----GHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLD 222
+ EL+EK Q L + G +K+L+ Y ++ +T V ++ SLARGLD
Sbjct: 283 LNSDLNNLELLEKMSQLPDLGQNDKFKKGAEELKVLIEYLNVDGVT-TVRYEPSLARGLD 341
Query: 223 YYTGIIYEAVLI----------GDRKKGE--SVGSVAGGGRYDKLVGMFDPRQRNVPCVG 270
YYTG IYEAV + G+ VGSVA GGRYD LV MFD + NVPC G
Sbjct: 342 YYTGAIYEAVAPKALEGTAVENSEDTAGQPVGVGSVAAGGRYDGLVKMFDSKA-NVPCCG 400
Query: 271 ISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+S G+ER+F+++E++ ++ +RTT+ +VYVASAQKNL+ +R ++ L GI +
Sbjct: 401 VSFGIERLFAIMEAR---QKVAIRTTQTEVYVASAQKNLVRDRKKLVKMLRSAGIKTE 455
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 17 IRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDY 76
+R+ ++ V P I ++ ++KE K L + E K LKT KGTRDY
Sbjct: 13 VRQAEETVKPRIAYAQRSGRRIKE-KVALMQAKRKEAGETGAPEKPGKFVLKTGKGTRDY 71
Query: 77 GPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
GP LR +VL+ + F R+GA+TIDTPV
Sbjct: 72 GPAQSALRNSVLQTVTETFNRYGAETIDTPV 102
>sp|P07263|SYH_YEAST Histidine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HTS1 PE=1 SV=2
Length = 546
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 143/248 (57%), Gaps = 29/248 (11%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+LDG+F+ GV + R I S+VDKLDK WE V+ EMT+EKG S+ ADKIG YV+ +G
Sbjct: 215 ILDGIFQIAGVKDEDVRKISSAVDKLDKSPWEAVKKEMTEEKGQSEETADKIGEYVKLNG 274
Query: 169 H-KELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGI 227
KE+ D + +++ A GL I L+ Y + +++ + FDLSLARGLDYYTG+
Sbjct: 275 SLKEIHAVLSADANITSNEKAKQGLDDIATLMKYTEAFDIDSFISFDLSLARGLDYYTGL 334
Query: 228 IYEAVLIGD---------RKKGES---------VGSVAGGGRYDKLVGMFD----PRQRN 265
IYE V +KK +S VGS+A GGRYD LV MF +
Sbjct: 335 IYEVVTSASAPPENASELKKKAKSAEDASEFVGVGSIAAGGRYDNLVNMFSEASGKKSTQ 394
Query: 266 VPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQ-----KNLLEERMRICSYL 320
+PCVGIS GVERIFSLI+ ++ + T ++ T QV+V + L ERM++ L
Sbjct: 395 IPCVGISFGVERIFSLIKQRINSS-TTIKPTATQVFVMAFGGGKDWTGYLPERMKVTKQL 453
Query: 321 WKNGINAD 328
W GI A+
Sbjct: 454 WDAGIEAE 461
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 62 QVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLL 110
+++++LKTPKGT+D+ MV+R+ + + +FK+HG TIDTPV L
Sbjct: 50 KLQVSLKTPKGTKDWADSDMVIREAIFSTLSGLFKKHGGVTIDTPVFEL 98
>sp|C4V9J0|SYHC_NOSCE Probable histidine--tRNA ligase, cytoplasmic OS=Nosema ceranae
(strain BRL01) GN=NCER_101238 PE=3 SV=1
Length = 430
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 131/222 (59%), Gaps = 20/222 (9%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G+FE C +P F T+ SS+DKLDK + D+ E+ + KGL+ + IY+Q+ G
Sbjct: 163 ILYGIFEVCEIPNNLFATVSSSIDKLDKIAVNDINKEL-KLKGLTDKQIINLNIYIQKSG 221
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
++++ ++D+ K A+ L L YC I + +D +I DLSLARGLDYYTG+I
Sbjct: 222 TVDVLDFLRENDVYKKCSEAVDDLCK---LYEYCKIMKCSDHLIIDLSLARGLDYYTGMI 278
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVGMFD----PRQRNVPCVGISIGVERIFSLIES 284
E + +++GSVAGGGRYD L+G + NVPC G SIG+ RIFS I+
Sbjct: 279 IEGKYL-----NKNIGSVAGGGRYDNLIGSLENSSYTNTYNVPCAGFSIGLSRIFSCIQK 333
Query: 285 KLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGIN 326
T V+V+++++ K LLEER++I S LW+ I+
Sbjct: 334 PKV-------NTNVKVFISASGKLLLEERLKIQSILWEANIS 368
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
++LKTPKGT D P+ ++ ++++++ ++FK HGA IDTPV
Sbjct: 1 MSLKTPKGTTDLNPDDALVYEDLIDRTKNIFKLHGAVPIDTPV 43
>sp|Q6E6B4|SYHC_ANTLO Probable histidine--tRNA ligase, cytoplasmic OS=Antonospora
locustae PE=3 SV=1
Length = 445
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 131/222 (59%), Gaps = 13/222 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L+ L E G+ F T+CS++DK+D+ W D+ E+ + KGL + YV G
Sbjct: 162 ILNALMEHSGIGRNNFATVCSTIDKMDRLPWADIAAEL-RTKGLVDGQVAVLKRYVCVSG 220
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
E+++ +L S G+ + LL Y IY + D+ + DLSLARGLDYYTG+I
Sbjct: 221 GIEVIDTLRSGELYLYSDGK-KGIDDLALLFKYLGIYGVGDRAVVDLSLARGLDYYTGVI 279
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVG--MFDPRQRNVPCVGISIGVERIFSLIESKL 286
+EA L+ D K VGSVAGGGRYD LV + + +VPCVG S+GV RI S++ L
Sbjct: 280 FEAALV-DFK---DVGSVAGGGRYDNLVSSVLGKKSEWSVPCVGFSLGVTRILSVM---L 332
Query: 287 AAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+R RTTE +V+V S+ LLEERM + S LW+ G+ A+
Sbjct: 333 KVDRR--RTTETEVFVGSSGGLLLEERMGVLSRLWRAGVAAE 372
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
+ L+TPKGT DYGP L L + VF+ HGA IDTP
Sbjct: 1 MDLRTPKGTHDYGPRECYLLNRFLRAVTEVFETHGAACIDTP 42
>sp|Q8SRR3|SYHC_ENCCU Probable histidine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0620 PE=3 SV=1
Length = 435
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 13/220 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L + E GV + + T+CS++DK++K SWED+ E+ KGLS+ Y+ G
Sbjct: 164 ILTSILEVVGVSCESYGTVCSTIDKIEKMSWEDIGRELVL-KGLSEEQVRTTKKYMTMGG 222
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
KE V ++ D + + + ++ L C I + ++ D+SLARGLDYYTG+I
Sbjct: 223 -KEDVLGLLKADPVYGIERCKAAVHDMEELFRLCRILGCSGSLVMDISLARGLDYYTGMI 281
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAA 288
EA +G +SVGSV GGGRYD L R + PCVG S+GV RIFSL+ +
Sbjct: 282 LEAEYVG-----KSVGSVIGGGRYDNLTENLGERCVSTPCVGFSVGVSRIFSLLYEEYDK 336
Query: 289 ERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
E + + VYV ++ L+ER+ + L I ++
Sbjct: 337 ESSTM------VYVGASGGLFLDERLSVLRILQDANICSE 370
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 66 TLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
+LKTPKGT D P L + ++E+I VF +GA I TP
Sbjct: 3 SLKTPKGTMDESPRQCFLHEEIIERIRRVFVLYGAVPISTP 43
>sp|B2J5J5|SYH_NOSP7 Histidine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 /
PCC 73102) GN=hisS PE=3 SV=1
Length = 470
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 125/221 (56%), Gaps = 12/221 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G F+S G+ + ++ + VD L+K V+ E+ +E G+S KI +++ G
Sbjct: 194 VLTGFFKSVGITEDKIKSCINIVDNLEKIGESKVKQELEKE-GVSGEQTQKIIDFIKIDG 252
Query: 169 H-KELVEKFMQDDL-LKTSKSALVGLAAIKLLLSYCDIYELT-DKVIFDLSLARGLDYYT 225
E+++K L L ++ +G++ ++ +++ +T ++ DLS+ARGLDYYT
Sbjct: 253 SVDEVLDKLKHLTLNLPETEQLSLGISELETVIAGVRNLGVTENRFCIDLSIARGLDYYT 312
Query: 226 GIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
G +YE L+G E++GS+ GGRY++LVG+F +P VGISIG+ R+ S +
Sbjct: 313 GTVYETTLLGH----EALGSICSGGRYEELVGVF--LGEKMPGVGISIGLTRLISRLLK- 365
Query: 286 LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGIN 326
A + L T QV V + Q++L+ +++ +L + GIN
Sbjct: 366 -AGILSTLAATPAQVMVVNMQEDLMPTYLKVSQHLRQAGIN 405
>sp|Q3MAV8|SYH_ANAVT Histidine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=hisS PE=3 SV=1
Length = 462
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 12/221 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G F+S + Q ++ S +D L+K V+ E+ +E G++ KI +++ G
Sbjct: 186 VLTGFFQSLDISETQIKSCISIIDNLEKIGEAKVKLELEKE-GINPEQTQKIIDFIKIDG 244
Query: 169 H-KELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDK-VIFDLSLARGLDYYT 225
++++K L S+ +G++ ++ +++ + DK DL++ARGL+YYT
Sbjct: 245 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYT 304
Query: 226 GIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
G +YE LIG E++GS+ GGRY++LVG F + +P VGISIG+ R+ S +
Sbjct: 305 GTVYETTLIGH----EALGSICSGGRYEELVGTFIGEK--MPGVGISIGLTRLISRLLK- 357
Query: 286 LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGIN 326
A L T QV V + Q NL+ +++ L + G+N
Sbjct: 358 -AGILNTLPPTPAQVVVVNMQDNLMPTYLKVSQQLRQAGLN 397
>sp|Q8YMC2|SYH_NOSS1 Histidine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=hisS PE=1 SV=1
Length = 462
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 12/221 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G F+S + Q ++ S +D L+K V+ E+ +E G++ KI +V+ G
Sbjct: 186 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKE-GINPEQTQKIIDFVKIDG 244
Query: 169 H-KELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDK-VIFDLSLARGLDYYT 225
++++K L S+ +G++ ++ +++ + DK DL++ARGL+YYT
Sbjct: 245 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYT 304
Query: 226 GIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
G +YE LIG E++GS+ GGRY++LVG F + +P VGISIG+ R+ S +
Sbjct: 305 GTVYETTLIGH----EALGSICSGGRYEELVGTFIGEK--MPGVGISIGLTRLISRLLK- 357
Query: 286 LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGIN 326
A L T QV V + Q L+ +++ L + G+N
Sbjct: 358 -AGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLN 397
>sp|Q7NHH9|SYH_GLOVI Histidine--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=hisS PE=3 SV=1
Length = 467
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 11/177 (6%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LL GL E G+ + T+ +S+DKLDK E VR E+ KGL+ D + + G
Sbjct: 188 LLKGLIEQAGIAPTKEATVLTSIDKLDKLPPEKVRLELAG-KGLNADQLDALFQVIALEG 246
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIF--DLSLARGLDYYTG 226
E V + + LL S++A G+ + LL Y + + D + DL+LARGLDYYTG
Sbjct: 247 TSEQVLEGARS-LLAGSEAAQRGIGELTKLLHYLEALGV-DSAYYRIDLALARGLDYYTG 304
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIE 283
I+E V VGSV GGRYD+L+ + ++P G S G++RI + ++
Sbjct: 305 TIFETV------SAAKVGSVGAGGRYDRLIYDLSGGKADLPACGTSFGLDRILAAMD 355
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
L T GTRD+ P+ M+ R+ V++ + ++F+++G + ++TP
Sbjct: 4 LGTMGGTRDFLPDEMIRREYVIDTLKTIFRKYGFEPLETPA 44
>sp|B8ER30|SYH_METSB Histidine--tRNA ligase OS=Methylocella silvestris (strain BL2 / DSM
15510 / NCIMB 13906) GN=hisS PE=3 SV=1
Length = 501
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 21/195 (10%)
Query: 109 LLDGLFESCGVP----AKQFRTICSSVDKLDKWSWEDVRY-----------EMTQEKGLS 153
+LDG+ E+ G+ A + T+ ++DKLDK+ E V + T+ GL
Sbjct: 178 VLDGVLEAIGLGGEENAGRRMTVLRAIDKLDKFGPEGVALLLGPGRKDESGDFTKGAGLE 237
Query: 154 KIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIF 213
+ +++ YV G + + S+ G+A + + + D + ++
Sbjct: 238 RTAVERVLNYVAAQGEGTAQMLGVLRASVAGSQRGEEGVAELAEIAALIDAAGFSARIRI 297
Query: 214 DLSLARGLDYYTGIIYEAVLI----GDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCV 269
D S+ RGL+YYTG ++EA L G+ K GS+ GGGRYD LVG F R NVP
Sbjct: 298 DPSVVRGLEYYTGPVFEAELTFEVQGEDGKPVRFGSIGGGGRYDGLVGRF--RGENVPAT 355
Query: 270 GISIGVERIFSLIES 284
G SIGV R++S +++
Sbjct: 356 GFSIGVSRLYSALKA 370
>sp|Q638Q6|SYH1_BACCZ Histidine--tRNA ligase 1 OS=Bacillus cereus (strain ZK / E33L)
GN=hisS1 PE=3 SV=1
Length = 425
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LL+G+ ES +P ++ + S+DK++K + VR ++ E+G+S+ +AD I V
Sbjct: 164 LLNGILESINIPTERTSDVILSLDKIEKIGIDGVRKDVL-ERGISEEMADTICNTVLS-- 220
Query: 169 HKELVEKFMQDDLLKTSKSALV--GLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
K DD + LV G+ ++ L Y + + IF+ LARGL YTG
Sbjct: 221 ----CLKLSIDDFKDAFNTPLVAEGVNELQQLQQYLIALGINENAIFNPFLARGLTMYTG 276
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
+YE L K G S+ GGRYD ++G F N P VGIS G++ I++ + K
Sbjct: 277 TVYEIFL----KDGSITSSIGSGGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQK 331
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
+ +K KGT+DY PE VLR + F+R+G ++++TP
Sbjct: 1 MEMKNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKSLETP 42
>sp|Q8P9P5|SYH_XANCP Histidine--tRNA ligase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=hisS PE=3
SV=1
Length = 477
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 22/230 (9%)
Query: 109 LLDGLFESCGVPAKQFR-TICSSVDKLDKWSWEDVRYEMTQEK-GLSKIIADKIGIYV-- 164
LL G FES GV + + + VDK+DK E VR + E G++ DKI +V
Sbjct: 184 LLRGFFESLGVAEGELQLAVLREVDKIDKRGAEYVRDTLAGEGFGIAAAQVDKILAFVAV 243
Query: 165 QQHGHKELVEKFMQDDLLKTSKSALV----GLAAIKLLLSYCDIYELTDKVI-FDLSLAR 219
+ +GH + Q L+TS A V G+A ++ +L + + + S+AR
Sbjct: 244 RSNGH---ADALAQLQALETSVGASVTLGEGIAELREVLELVKALGVPETAYCLNFSIAR 300
Query: 220 GLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIF 279
GLDYYTG +YE L + +GS+ GGRY+ L + + +P VGISIG+ R+F
Sbjct: 301 GLDYYTGTVYETTLTDHPQ----IGSICSGGRYENLASHYT--KSKLPGVGISIGLTRLF 354
Query: 280 -SLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
L E+ L A + + V VA ++ L++ + I L GIN +
Sbjct: 355 WQLREAGLIA---GIAESSVHAMVALMDESRLDDALDIARRLRIGGINTE 401
>sp|B6YS23|SYH_AZOPC Histidine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=hisS PE=3 SV=1
Length = 458
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 11/207 (5%)
Query: 122 KQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDL 181
K+ I +++DKLDK V E+ Q KG+S D++ + G + +++ +
Sbjct: 198 KKITDITTAMDKLDKVGLTKVNEELLQ-KGISIQAIDQLQPFFLLKGSNQNKISTLKN-I 255
Query: 182 LKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGE 241
L TS + GL I+ + + ++ + + FDL+LARGL+YYTG I+E +
Sbjct: 256 LSTSPIGIKGLQEIETIFNKLNLIPTRNTIKFDLTLARGLNYYTGTIFEVKCL-----NV 310
Query: 242 SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVY 301
+GSV GGGRYD L +F N+ VGIS G +RIF ++ T T++ ++
Sbjct: 311 PIGSVLGGGRYDNLTNIFG--LSNLSGVGISFGADRIFDILNQLNLYPNTNASHTQI-LF 367
Query: 302 VASAQKNLLEERMRICSYLWKNGINAD 328
V +K ++ + + L K GINA+
Sbjct: 368 VNLGEKG-VDFILPVLFSLRKVGINAE 393
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
L PKGTRD+ P M R + + I SVF +G + I+TP
Sbjct: 4 LSIPKGTRDFTPCEMDKRNYIFDTIRSVFYLYGFKQIETP 43
>sp|Q4UU37|SYH_XANC8 Histidine--tRNA ligase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=hisS PE=3 SV=1
Length = 477
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 109 LLDGLFESCGVPAKQFR-TICSSVDKLDKWSWEDVRYEMTQEK-GLSKIIADKIGIYV-- 164
LL G FES GV + + + VDK+DK E VR +T E G++ DKI +V
Sbjct: 184 LLRGFFESLGVAEGELQLAVLREVDKIDKRGAEYVRDTLTGEGFGIATAQVDKILAFVAV 243
Query: 165 QQHGHKELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVI-FDLSLARGLD 222
+ +GH + + + + + S + G+A ++ +L + + + S+ARGLD
Sbjct: 244 RSNGHADALAQLQALEASVGASATLGEGIAELREVLELVKALGVPETAYCLNFSIARGLD 303
Query: 223 YYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIF-SL 281
YYTG +YE L + +GS+ GGRY+ L + + +P VGISIG+ R+F L
Sbjct: 304 YYTGTVYETTLTDHPQ----IGSICSGGRYENLASHYT--KSKLPGVGISIGLTRLFWQL 357
Query: 282 IESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
E+ L A + + V VA ++ L++ + I L GIN +
Sbjct: 358 REAGLIA---GIAESSVHAMVALMDESRLDDALDIARRLRIGGINTE 401
>sp|P62367|SYH1_BACC1 Histidine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 10987)
GN=hisS1 PE=3 SV=1
Length = 436
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LL+G+ ES +P ++ + S+DK++K + VR ++ E+G+S+ +AD I V
Sbjct: 164 LLNGILESINIPTERTSDVILSLDKIEKIGIDGVRKDVL-ERGISEEMADTICNTVLS-- 220
Query: 169 HKELVEKFMQDDLLKTSKSALV--GLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
K D + + LV G+ ++ L Y + + IF+ LARGL YTG
Sbjct: 221 ----CLKLTIADFKEAFNNPLVADGVNELQQLQQYLIALGINENAIFNPFLARGLTMYTG 276
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
+YE L K G S+ GGRYD ++G F N P VGIS G++ I++ + K
Sbjct: 277 TVYEIFL----KDGSITSSIGSGGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQK 331
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
+ +K KGT+DY PE VLR + F+R+G + ++TP
Sbjct: 1 MEMKNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETP 42
>sp|Q892X7|SYH_CLOTE Histidine--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=hisS PE=3 SV=1
Length = 439
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 25/224 (11%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L+G FE V + + + ++DK++K + VR E+ QE GL DKI ++ G
Sbjct: 170 VLNGFFEGTDVEDR--KGVLRAIDKIEKIGEDGVRKEL-QELGLEDSKIDKIINFINIKG 226
Query: 169 HKELVEKFM-----QDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVI-FDLSLARGLD 222
K V K + ++D+ K G+ ++ ++ Y + + DK DL++ARGLD
Sbjct: 227 TKSEVIKSLKELDIENDVFKE------GVYELEKVVHYIKSFNVPDKNYKIDLTIARGLD 280
Query: 223 YYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIF-SL 281
YYTG +YE VL +GSV GGRYD L + + +P VGISIG+ R+F L
Sbjct: 281 YYTGTVYETVL----NNYPQIGSVCSGGRYDNLAEHY--TNQKLPGVGISIGLTRLFYQL 334
Query: 282 IESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGI 325
E+K+ E ++ V + +E +++ + L +N I
Sbjct: 335 REAKIIGENASSTLSQALVIPVG---DTMEYSIKVANKLRENEI 375
>sp|Q558U1|IFKA_DICDI Probable serine/threonine-protein kinase ifkA OS=Dictyostelium
discoideum GN=ifkA PE=2 SV=1
Length = 2258
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 49/263 (18%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLD-KWSWEDVRYEMTQEKGLSKIIADKIGIYVQQH 167
LLD + CGV + F + +V +L + +W V + +E GLS I I Y +Q
Sbjct: 1700 LLDSILSECGVEKRFFTVVYQTVAQLHWRLNWAQVAQSL-KEHGLSASIVSNISTYFRQR 1758
Query: 168 GHKELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
G EL + Q + LL K A G++ +K+L+ + + + + DLSL YY G
Sbjct: 1759 G--ELAQCVTQLESLLANHKEATTGISDLKILVRNLQMINIIPRFLLDLSLIHNHQYYEG 1816
Query: 227 IIYEAVL----IGDRKKGESVGSVAGGGRYDKLVGMFDPR----QRNVPCVGISIGVERI 278
++++A + + + + E + S GGRYDKL+ P V VG+++ E+I
Sbjct: 1817 LVFQAYIERPTLSNPSRTEIIMS---GGRYDKLIKSLHPNPSLSNNIVSGVGVTLACEKI 1873
Query: 279 FS--------LIESKLAAERTKLR-------------------------TTEVQVYVASA 305
+ L+ + T+ + ++V+V S
Sbjct: 1874 VNSVLNYRQHLLNNCFNTTYTRRNKDPPNSNNNPNNNNLNNNVSIFTKFQSHIEVFVCSL 1933
Query: 306 QKNLLEERMRICSYLWKNGINAD 328
+LL E++++ S LW GI AD
Sbjct: 1934 GSSLLGEKLQVASQLWSAGIKAD 1956
>sp|Q81B71|SYH1_BACCR Histidine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=hisS-1 PE=3 SV=1
Length = 426
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 13/179 (7%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LL+G+ ES +P + + S+DK++K + VR ++ E+G+S+ +AD I V
Sbjct: 165 LLNGILESINIPTELTSDVILSLDKIEKIGIDGVRKDVL-ERGISEEMADTICNTVLS-- 221
Query: 169 HKELVEKFMQDDLLKTSKSALV--GLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
K D + + LV G+ ++ L Y + + IF+ LARGL YTG
Sbjct: 222 ----CLKLTIADFKEAFNNPLVADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTG 277
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
+YE + + DR S+GS GGRYD ++G F N P VGIS G++ I++ + K
Sbjct: 278 TVYE-IFLKDRSITSSIGS---GGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQK 332
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
+ ++ KGT+DY PE VLR + F+R+G + ++TP
Sbjct: 2 MEMRNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETP 43
>sp|Q550L8|IFKB_DICDI Probable serine/threonine-protein kinase ifkB OS=Dictyostelium
discoideum GN=ifkB PE=2 SV=1
Length = 1358
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 49/263 (18%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLD-KWSWEDVRYEMTQEKGLSKIIADKIGIYVQQH 167
LLD + CGV + F + +V +L + +W V + +E GLS I I Y +Q
Sbjct: 800 LLDSILSECGVEKRFFTVVYQTVAQLHWRLNWAQVAQSL-KEHGLSASIVSNISTYFRQR 858
Query: 168 GHKELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
G EL + Q + LL K A G++ +K+L+ + + + + DLSL YY G
Sbjct: 859 G--ELAQCVTQLESLLANHKEATTGISDLKILVRNLQMINIIPRFLLDLSLIHNHQYYEG 916
Query: 227 IIYEAVL----IGDRKKGESVGSVAGGGRYDKLVGMFDPR----QRNVPCVGISIGVERI 278
++++A + + + + E + S GGRYDKL+ P V VG+++ E+I
Sbjct: 917 LVFQAYIERPTLSNPSRTEIIMS---GGRYDKLIKSLHPNPSLSNNIVSGVGVTLACEKI 973
Query: 279 FS--------LIESKLAAERTKLR-------------------------TTEVQVYVASA 305
+ L+ + T+ + ++V+V S
Sbjct: 974 VNSVLNYRQHLLNNCFNTTYTRRNKDPPNSNNNPNNNNLNNNVSIFTKFQSHIEVFVCSL 1033
Query: 306 QKNLLEERMRICSYLWKNGINAD 328
+LL E++++ S LW GI AD
Sbjct: 1034 GSSLLGEKLQVASQLWSAGIKAD 1056
>sp|A6LIF7|SYH_PARD8 Histidine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=hisS PE=3 SV=1
Length = 451
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 25/239 (10%)
Query: 77 GPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCL-------LDGLFESCGVPAKQFRTICS 129
G + ++ +++ + VF R G + VC+ L G+ E G A + I
Sbjct: 152 GSDSLINEVELIQIMDEVFHRFGIR-----VCIKMNNRKILSGIAEIIG-EADKIVDITV 205
Query: 130 SVDKLDKWSWEDVRYEMTQEKGLSKIIADKI-GIYVQQHGHKELVEKFMQDDLLKTSKSA 188
++DKLDK ++V E+ + KGL + +++ I + Q ++E + + +L S++
Sbjct: 206 AIDKLDKIGLDNVNEEL-RSKGLPEEAIERLQPIIMLQGSNQEKIATLKK--VLSASETG 262
Query: 189 LVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAG 248
L G+A + +L + ++ DL+LARGL+YYTG I+E + +GS+ G
Sbjct: 263 LKGVAELDFILERISHTSIRAELELDLTLARGLNYYTGAIFEV-----KALDVQIGSITG 317
Query: 249 GGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQK 307
GGRYD L G+F V VG S G +RIF ++ L+TT++ ++V QK
Sbjct: 318 GGRYDNLTGVFG--MEGVSGVGFSFGADRIFDVLNQLDLYPEGSLKTTQL-LFVNFGQK 373
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
PKGTRD+ PE M R + I VF +G Q I+TP
Sbjct: 7 PKGTRDFSPEEMAKRNYIFNTIREVFHLYGFQQIETPA 44
>sp|Q7UZ20|SYH_RHOBA Histidine--tRNA ligase OS=Rhodopirellula baltica (strain SH1)
GN=hisS PE=3 SV=1
Length = 442
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 108 CLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQH 167
+L GL ES G+ A + + S+DKL K E EM + G++ AD + +
Sbjct: 164 AILTGLLESLGL-ADKTTPVLRSLDKLGKIGREKTANEMVESAGVTAEQADAVLRLAECD 222
Query: 168 GHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELT-DKVIFDLSLARGLDYYTG 226
G E + + + + +++A G+ + + ++ D++ D+S+ARGLDYYTG
Sbjct: 223 GDAESILASLPE-ITGGNETAAAGIERLTQIYRGALASGVSPDRLKIDVSIARGLDYYTG 281
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKL 286
+I+E L D G +GSV GGRYD L G++ ++++P +G S+G++R+ + +ES
Sbjct: 282 VIFETTL--DELPG--IGSVCSGGRYDNLAGLY--TKQHLPGIGASLGLDRLLAALES-- 333
Query: 287 AAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
R + V+V K ++ +++ S L GI +
Sbjct: 334 -LGRLSGVSKPCAVFVPFFDKGHRDDYLKLASQLRDAGIGVE 374
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+T KG RDY P M+ R+ +++ VF+ G IDTP
Sbjct: 5 RTLKGFRDYLPAAMIPREQLMQTAREVFRSFGFAPIDTPT 44
>sp|Q8A6N7|SYH_BACTN Histidine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=hisS
PE=3 SV=1
Length = 454
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G+ E G A + I ++DKLDK E+V E+ +EKG+S K+ + G
Sbjct: 187 ILSGIAEIIG-EADKIVDITVAIDKLDKIGLENVNAEL-KEKGISDEAIAKLQPIILLSG 244
Query: 169 HKELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGI 227
EK +L S++ + G+ + +L + L +++ DL+LARGL+YYTG
Sbjct: 245 TN--TEKLATLKSVLAASETGMKGVEESEFILGTLETMGLKNEIELDLTLARGLNYYTGA 302
Query: 228 IYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLI 282
I+E + +GS+ GGGRYD L G+F V VGIS G +RIF ++
Sbjct: 303 IFEV-----KALDVQIGSITGGGRYDNLTGVFG--MAGVSGVGISFGADRIFDVL 350
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
PKGTRD+ P M R + I V+ +G Q I+TP
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVYHLYGFQQIETP 44
>sp|Q64QS2|SYH_BACFR Histidine--tRNA ligase OS=Bacteroides fragilis (strain YCH46)
GN=hisS PE=3 SV=1
Length = 454
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 25/204 (12%)
Query: 88 LEQII-SVFKRHGAQTIDTPVCL-------LDGLFESCGVPAKQFRTICSSVDKLDKWSW 139
L QI+ +VF R G + VC+ L G+ E G A + I ++DKLDK
Sbjct: 163 LMQIVDTVFTRFGIR-----VCIKINNRKILTGIAEIIG-EADKIVDITVAIDKLDKIGL 216
Query: 140 EDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQ-DDLLKTSKSALVGLAAIKLL 198
++V E+ EKG+S+ K+ + G EK +L S++ L G+ + +
Sbjct: 217 DNVNKELA-EKGISEEAIAKLQPIILLSGTN--TEKLATLKTVLSDSETGLKGVEESEFI 273
Query: 199 LSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGM 258
L+ L +++ DL+LARGL+YYTG I+E + +GS+ GGGRYD L G+
Sbjct: 274 LNTLQTMGLKNEIELDLTLARGLNYYTGAIFEV-----KALDVQIGSITGGGRYDNLTGV 328
Query: 259 FDPRQRNVPCVGISIGVERIFSLI 282
F V VGIS G +RIF ++
Sbjct: 329 FG--MAGVSGVGISFGADRIFDVL 350
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
PKGTRD+ P M R + I V+ +G Q I+TP
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVYHLYGFQQIETP 44
>sp|A6KXA6|SYH_BACV8 Histidine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 /
DSM 1447 / NCTC 11154) GN=hisS PE=3 SV=1
Length = 454
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G+ E G A + I ++DKLDK E+V E+ KG+ + DK+ + G
Sbjct: 187 ILTGIAEIIG-EADKIVDITVAIDKLDKIGLENVNAELAS-KGIPQEAIDKLQPIILLSG 244
Query: 169 HKELVEKF-MQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGI 227
E EK +L TS++ L G+ + +L + +V DL+LARGL+YYTG
Sbjct: 245 SNE--EKLETLKTVLATSEAGLKGVEESEFILKTVSALGVKSEVELDLTLARGLNYYTGA 302
Query: 228 IYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLI 282
I+E + +GS++GGGRYD L G+F + VGIS G +RIF ++
Sbjct: 303 IFEV-----KALDVQIGSISGGGRYDNLTGVFG--MDGMSGVGISFGADRIFDVL 350
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
PKGTRD+ P M R + I VF G Q I+TP
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVFHLFGYQQIETP 44
>sp|Q5LAE0|SYH_BACFN Histidine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=hisS PE=3 SV=1
Length = 454
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 25/204 (12%)
Query: 88 LEQII-SVFKRHGAQTIDTPVCL-------LDGLFESCGVPAKQFRTICSSVDKLDKWSW 139
L QI+ +VF R G + VC+ L G+ E G A + I ++DKLDK
Sbjct: 163 LMQIVDTVFTRFGIR-----VCIKINNRKILTGIAEIIG-EADKIVDITVAIDKLDKIGL 216
Query: 140 EDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQ-DDLLKTSKSALVGLAAIKLL 198
++V E+ EKG+S K+ + G EK +L S++ L G+ + +
Sbjct: 217 DNVNKELA-EKGISGEAIAKLQPIILLSGTN--AEKLATLKTVLSDSETGLKGVEESEFI 273
Query: 199 LSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGM 258
L+ L +++ DL+LARGL+YYTG I+E + +GS+ GGGRYD L G+
Sbjct: 274 LNTLQTMGLKNEIELDLTLARGLNYYTGAIFEV-----KALDVQIGSITGGGRYDNLTGV 328
Query: 259 FDPRQRNVPCVGISIGVERIFSLI 282
F V VGIS G +RIF ++
Sbjct: 329 FG--MAGVSGVGISFGADRIFDVL 350
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
PKGTRD+ P M R + I V+ +G Q I+TP
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVYHLYGFQQIETP 44
>sp|B1L6B4|SYH_KORCO Histidine--tRNA ligase OS=Korarchaeum cryptofilum (strain OPF8)
GN=hisS PE=3 SV=1
Length = 428
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 20/172 (11%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LL G+FE F I ++DKLDK + V+ E+ + +I + + +
Sbjct: 164 LLTGVFEEELGINNPF-PIYRAIDKLDKIGVDGVKGELARLGAHESLIGRIMELISTRGS 222
Query: 169 HKELVEKF--MQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
E+ F +++D +K AL L I ++S D+++FDLSL RGLDYYTG
Sbjct: 223 FNEISNTFRRIENDKVKV---ALDHLEEIFSIVS-------DDRLVFDLSLVRGLDYYTG 272
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERI 278
++E + R +GS+AGGGRYD+L+G++ ++VP G+S+GVER+
Sbjct: 273 PVFETSVSEPR-----IGSLAGGGRYDRLIGLYS--GKDVPATGVSLGVERL 317
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
P+G RD+ P M+LRK VL +I +F+R+G I+TP
Sbjct: 5 PRGFRDFPPPMMILRKRVLSKIEEIFRRYGFDPIETP 41
>sp|A5F9R5|SYH_FLAJ1 Histidine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=hisS PE=3 SV=1
Length = 475
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 93 SVFKRHGAQTIDTPVC---LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQE 149
+VF G + + + +L G+ E G K ++DKLDK + V+ EM E
Sbjct: 187 TVFTSLGLEGVTIKINNRKILSGIAEVIGASDK-LIDFTVALDKLDKIGEDGVKKEMI-E 244
Query: 150 KGLSKIIADKIGIYVQQHGHKELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELT 208
KG+S+ K+ G +K Q DLL +S+ + G+ +K + L+
Sbjct: 245 KGISEDALVKVQPLFNFSGT--FADKIAQLSDLLSSSEEGMKGVEELKFICDNVADLGLS 302
Query: 209 DKVI-FDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVP 267
V+ D++LARGL+YYTG I+E K ++GS+ GGGRYD L G+F +N+
Sbjct: 303 TAVLDLDVTLARGLNYYTGAIFEVA----APKTVAMGSIGGGGRYDDLTGIFG--LKNMS 356
Query: 268 CVGISIGVERIFSLIESKLAAERTKLRTTEV---------QVYVASAQKNLLEERMRICS 318
VGIS G++RI+ ++E T T++ +Y + A + L +E +++
Sbjct: 357 GVGISFGLDRIYLVLEELQLFPETVAATSKAIFLNFGDKEALYASKAIQKLRQENIKVEL 416
Query: 319 Y 319
Y
Sbjct: 417 Y 417
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
PKGTRD+ P + R+ +++ I + F++ G Q I+TP
Sbjct: 8 PKGTRDFSPAEVSKRQYIIQTIKANFEKFGFQPIETP 44
>sp|Q9YEB2|SYH_AERPE Histidine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=hisS PE=3
SV=2
Length = 435
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 91/174 (52%), Gaps = 22/174 (12%)
Query: 109 LLDGLFE---SCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQ 165
LL G+FE P +R I DKLDK E VR E+ + GL ++I +
Sbjct: 168 LLAGVFEEELGFDNPLPIYRAI----DKLDKIGVEGVRREL-ERLGLPGSTVERIMEIIS 222
Query: 166 QHGHK-ELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYY 224
G E++E + +++ L ++ +LS D +V D+SL RGLDYY
Sbjct: 223 WRGRPGEVLESVRRG--YGSNEKVREALDHLEEMLSLAD----DKRVELDMSLVRGLDYY 276
Query: 225 TGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERI 278
TG I E VL R +GSVAGGGRYD LVGMF R++P G+SIG+ERI
Sbjct: 277 TGPILEVVLDEPR-----IGSVAGGGRYDGLVGMFA--GRDIPATGVSIGIERI 323
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP-VCLLDGLFESCGVPAKQFRT 126
+ P+G RD+ PE M+LRK +L ++ VF+ +G +DTP V + L G A+ R
Sbjct: 7 RPPRGFRDFPPEVMILRKRLLSRLERVFESYGFDPLDTPAVEYWETLSGKYGEEAES-RL 65
Query: 127 ICSSVDKLDKWS--WEDVRYEMTQEKGLSKIIADKIGI 162
I D WS W +RY++T L++ +A G+
Sbjct: 66 IWRF---QDPWSGRWYALRYDLTVP--LARFVASNPGL 98
>sp|Q28TV0|SYH_JANSC Histidine--tRNA ligase OS=Jannaschia sp. (strain CCS1) GN=hisS PE=3
SV=1
Length = 505
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 28/241 (11%)
Query: 109 LLDGLFESCGVPAKQFRT----ICSSVDKLDKWSWEDVR-----------YEMTQEKGLS 153
+L+G+ E G+ + ++DK+D+ VR + T+ G+S
Sbjct: 189 VLNGVMEVAGLAGDDKEAARGIVLRAIDKMDRLGAGGVRDLLGDGRKDESGDFTKGAGIS 248
Query: 154 KIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYEL-TDKVI 212
ADKI +VQ L + S G++ ++ + S D++I
Sbjct: 249 SANADKILAFVQATAGDNAATVSNLKSLTEGSDIGTQGVSELEQIASLLAAQGYGPDRII 308
Query: 213 FDLSLARGLDYYTGIIYEAVLIGD--RKKGESV--GSVAGGGRYDKLVGMFDPRQRNVPC 268
D S+ RGL YYTG +YEA L D +KG++V GSVAGGGRYD LV F ++ VP
Sbjct: 309 IDPSVVRGLGYYTGPVYEAELTFDVQNEKGQTVQFGSVAGGGRYDDLVKRFTGQE--VPA 366
Query: 269 VGISIGVERIFSLIESKLAAERTKLRTTEV-QVYVASAQKNLLEERMRICSYLWKNGINA 327
G+SIGV+R+ + + + KL+ + V V ++ + E + + L GI A
Sbjct: 367 TGVSIGVDRLLAALHAT-----GKLKGEDAGPVIVTVMDRDRMAEYQAMVATLRNAGIRA 421
Query: 328 D 328
+
Sbjct: 422 E 422
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 62 QVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDT 105
Q + +TPKG RDY +V R+ +L +I V+ R+G ++T
Sbjct: 7 QPRPKAETPKGFRDYFGAEVVERQTMLRKIGEVYHRYGFDPLET 50
>sp|P56455|SYH_HELPY Histidine--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=hisS PE=3 SV=1
Length = 442
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 123/261 (47%), Gaps = 23/261 (8%)
Query: 77 GPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC---LLDGLFESCGVPAKQFRTICSSVDK 133
G E +V +++ I++ K + + +L+G+ E G+ Q VDK
Sbjct: 130 GSESLVCDAEIIQVIVASLKALDLEDFCVSINHRKILNGICEYFGIS--QVNEALRIVDK 187
Query: 134 LDKWSWEDVRYEMTQEKGLS----KIIADKIGIYVQQHGHKELVEKFMQ-DDLLKTSKSA 188
L+K V E+ +E GL+ K + + I I H E EK D + K
Sbjct: 188 LEKIGLNGVEEELKKECGLNSNTIKELLELIQIKQNDLSHAEFFEKIAYLKDYNENLKKG 247
Query: 189 LVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAG 248
+ L + LL I + K+ D S+ARGL YYTGI+YE L + +S+GSV
Sbjct: 248 IQDLERLYQLLGDLQISQNLYKI--DFSIARGLGYYTGIVYETTL----NEMKSLGSVCS 301
Query: 249 GGRYDKLVGMFDPRQRNVPCVGISIGVER-IFSLIESKLAAERTKLRTTEVQVYVASAQK 307
GGRYD L F + N+ VG SIG++R I +L E +L E R+T+ +V +A +
Sbjct: 302 GGRYDHLTKNFS--KENLQGVGASIGIDRLIVALSEMQLLDE----RSTQAKVLIACMHE 355
Query: 308 NLLEERMRICSYLWKNGINAD 328
R+ L ++GI ++
Sbjct: 356 EYFSYANRLAESLRQSGIFSE 376
>sp|Q6HG86|SYH1_BACHK Histidine--tRNA ligase 1 OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=hisS1 PE=3 SV=1
Length = 425
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
LL+G+ ++ +P + + S+DK++K + VR ++ E+G+S+ +AD I V
Sbjct: 164 LLNGILQAIHIPTELTSDVILSLDKIEKIGIDGVRKDVL-ERGISEEMADTICNTVLSCL 222
Query: 169 HKELVEKFMQDDLLKTSKSALV--GLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
+ D + + LV G+ ++ L Y + + IF+ LARGL YTG
Sbjct: 223 QLSIA------DFEEAFNNPLVADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTG 276
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKL 286
+YE L K G S+ GGRYD ++G F N P VGIS G++ I++ + K
Sbjct: 277 TVYEIFL----KDGSITSSIGSGGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKE 332
Query: 287 AAERT 291
T
Sbjct: 333 TVSST 337
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106
+ ++ KGT+DY PE VLR + F+R+G + ++TP
Sbjct: 1 MEMRNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETP 42
>sp|B9J9Y1|SYH_AGRRK Histidine--tRNA ligase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=hisS PE=3 SV=1
Length = 504
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 109 LLDGLFESCGV----PAKQFRTICSSVDKLDKWSWEDVRY-----------EMTQEKGLS 153
+LDG+ E+ G+ A Q + ++DKLDK+ E V + T+ GL+
Sbjct: 178 VLDGVLEAIGLGGDDKAGQRLNVLRAIDKLDKFGPEGVALLLGPGRKDESGDFTKGAGLN 237
Query: 154 KIIADKIGIYVQQHGHKELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDI--YELTDK 210
DK+ +V G K+ E Q +L+ + G+ + + S Y+ +D+
Sbjct: 238 AEQIDKVLFFV---GIKDYAESAAQLAELVAGTSKGGEGVEELNFIGSLVTSAGYQ-SDR 293
Query: 211 VIFDLSLARGLDYYTGIIYEAVLIGD--RKKGESV--GSVAGGGRYDKLVGMFDPRQRNV 266
+ D S+ RGL+YYTG +YEA L D +KGE V GSVAGGGRYD LV F + V
Sbjct: 294 IKIDPSVVRGLEYYTGPVYEAELTFDVTNEKGEKVVFGSVAGGGRYDGLVSRF--MGQPV 351
Query: 267 PCVGISIGVERIFSLIES 284
P G +IGV R+ + +++
Sbjct: 352 PATGFAIGVSRLMTALKN 369
>sp|Q9ZK27|SYH_HELPJ Histidine--tRNA ligase OS=Helicobacter pylori (strain J99) GN=hisS
PE=3 SV=1
Length = 442
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 124/258 (48%), Gaps = 23/258 (8%)
Query: 77 GPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC---LLDGLFESCGVPAKQFRTICSSVDK 133
G E +V +++ II+ K + + +L+G+ E G+ Q + VDK
Sbjct: 130 GSESLVCDAEIIQVIIASLKALDLEDFCVSINHRKILNGICEYFGIA--QVNEVLRIVDK 187
Query: 134 LDKWSWEDVRYEMTQEKGL-SKIIADKIG-IYVQQH--GHKELVEKFMQ-DDLLKTSKSA 188
L+K V E+ +E L S I D + + ++Q+ H E EK D + K
Sbjct: 188 LEKIGLNGVEEELKKECDLDSNTIKDLLEMVQIKQNDLSHAEFFEKIAYLKDYNENLKKG 247
Query: 189 LVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAG 248
+ L + LL I + K+ D S+ARGL YYTGI+YE L D K S+GSV
Sbjct: 248 IQDLERLYQLLGDLQISQNLYKI--DFSIARGLGYYTGIVYETTL-NDMK---SLGSVCS 301
Query: 249 GGRYDKLVGMFDPRQRNVPCVGISIGVER-IFSLIESKLAAERTKLRTTEVQVYVASAQK 307
GGRYD L F + N+ VG SIG++R I +L E +L E R+T+ +V +A +
Sbjct: 302 GGRYDHLTKNFS--KENLQGVGASIGIDRLIVALSEMQLLDE----RSTQAKVLIACMHE 355
Query: 308 NLLEERMRICSYLWKNGI 325
R+ L ++GI
Sbjct: 356 EYFSYANRLAESLRQSGI 373
>sp|Q47RX0|SYH_THEFY Histidine--tRNA ligase OS=Thermobifida fusca (strain YX) GN=hisS
PE=3 SV=1
Length = 438
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G +E G+ + +VDKL K + VR +I+ D+ G+ Q
Sbjct: 177 VLQGFYEGLGITDPL--AVIRAVDKLHKIGADAVR----------EILIDQAGLSSDQAA 224
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDK--------VIFDLSLARG 220
+ + D A +G++ L ++ E+ D+ V+ DLS+ARG
Sbjct: 225 ACLELAEIRGSDTTVVDAVAKLGVSHPTLTAGLDELGEVLDELSDLPSGSVVADLSIARG 284
Query: 221 LDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFS 280
LDYYTG +YEA D GS+ GGRY+ L G F +R++P VGISIG+ RIF+
Sbjct: 285 LDYYTGTVYEATFNDD----PGYGSICAGGRYENLAGQF--IRRSLPGVGISIGLTRIFA 338
Query: 281 LIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+ S+ + T+V V + S ++ + + + L + G N +
Sbjct: 339 KLVSEGRITGGRFCPTDVLVVLPSDERR--SAALAVAAQLRERGFNTE 384
>sp|Q8PLH2|SYH_XANAC Histidine--tRNA ligase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=hisS PE=3 SV=1
Length = 478
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 109 LLDGLFESCGVPAKQFR-TICSSVDKLDKWSWEDVRYEMTQE------KGLSKIIADKIG 161
LL G FES GV + + + VDK+DK + VR + E + +++I+A
Sbjct: 184 LLRGFFESLGVAEGELQLAVLREVDKIDKRGADYVRDTLVGEGFGIPAEQVARILAF--- 240
Query: 162 IYVQQHGHKELVEKFMQ-DDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVI-FDLSLAR 219
+ V+ +GH + + + + + S + G+A ++ +L + + + S+AR
Sbjct: 241 VAVRSNGHADALAQLQALEGSVGASATLGEGIAELREVLELVKALGVPESAYCLNFSIAR 300
Query: 220 GLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIF 279
GLDYYTG +YE L + +GS+ GGRYD L + + +P VGISIG+ R+F
Sbjct: 301 GLDYYTGTVYETTLTDHPQ----IGSICSGGRYDSLASHYT--KSKLPGVGISIGLTRLF 354
Query: 280 -SLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
L E+ L + + VQ VA + L++ + I L GIN +
Sbjct: 355 WQLREAGLI---QGIAESSVQAMVALMDETRLDDALDIARRLRIGGINTE 401
>sp|Q7MTB3|SYH_PORGI Histidine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=hisS PE=3 SV=1
Length = 454
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 15/197 (7%)
Query: 90 QIIS-VFKRHGAQT--IDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEM 146
QIIS VF+R G +T + +L G+ E A + I ++DKLDK + V E+
Sbjct: 164 QIISEVFRRLGIRTRILLNNRKILSGIAEVVD-EADRLTDITVAIDKLDKIGLDKVNDEL 222
Query: 147 TQEKGLSKIIADKIGIYVQQHG-HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIY 205
+ KG + +++ +++ G ++E +++ L +S++ L G+ + +L +
Sbjct: 223 -RTKGFGEEAIERLRPFIEMKGDNREKLDRL--KSALASSETGLKGIEELTYILDKVERV 279
Query: 206 ELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRN 265
+L +++ D+SLARGL YYTG I E + +GS+ GGGRYD L G+F
Sbjct: 280 QLHSELMVDISLARGLSYYTGAILEV-----KALDAEMGSITGGGRYDNLTGIFG--LEG 332
Query: 266 VPCVGISIGVERIFSLI 282
+ VGIS G +RI+ ++
Sbjct: 333 MSGVGISFGADRIYDVM 349
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
PKG RD+ P M R + + I V++ G I+TP
Sbjct: 7 PKGMRDFSPVEMSRRNYIFDTIREVYELFGFNQIETPT 44
>sp|A1B3C5|SYH_PARDP Histidine--tRNA ligase OS=Paracoccus denitrificans (strain Pd 1222)
GN=hisS PE=3 SV=1
Length = 494
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 109 LLDGLFESCGVP-AKQFRTICSSVDKLDKWSWEDVRYEMTQEK-----------GLSKII 156
+L+G+ ES GV K + ++DK DK + VR +T + GLS
Sbjct: 184 VLNGILESMGVAEGKPADDVLRTIDKFDKVGEQGVRQLLTTGRKDESGAFIEGVGLSPEQ 243
Query: 157 ADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVG---LAAIKLLLSYCDIYELTDKVIF 213
A+ + ++ G + S + G LA I +L+ + E ++ I
Sbjct: 244 AEPVLAFLTSKGADNAGTLANLRAAVGASATGAEGVEELAQIARMLAAMGVGE--ERAIV 301
Query: 214 DLSLARGLDYYTGIIYEAVL----IGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCV 269
D S+ RGL YYTG ++EA L + D+ + GSVAGGGRYD LV F ++ VP
Sbjct: 302 DPSIVRGLGYYTGPVFEAELTFEILDDKGRKRQFGSVAGGGRYDGLVERFTGQK--VPAT 359
Query: 270 GISIGVERIFSLIESK 285
G+SIGV+R+ + + +K
Sbjct: 360 GVSIGVDRLLAALRAK 375
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 62 QVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDT 105
Q + +TPKG RDY + RK +L++I ++ RHG + ++T
Sbjct: 8 QPRPKAETPKGFRDYFGADVTERKQMLDRIAQIYHRHGFEPLET 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,868,066
Number of Sequences: 539616
Number of extensions: 5057047
Number of successful extensions: 20742
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 738
Number of HSP's that attempted gapping in prelim test: 18924
Number of HSP's gapped (non-prelim): 1445
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)