Query psy13909
Match_columns 328
No_of_seqs 298 out of 1627
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:34:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1936|consensus 100.0 1.3E-83 2.9E-88 612.1 30.8 316 3-328 6-452 (518)
2 PLN02972 Histidyl-tRNA synthet 100.0 1.3E-54 2.8E-59 447.1 29.3 259 63-328 323-699 (763)
3 COG0124 HisS Histidyl-tRNA syn 100.0 7.8E-49 1.7E-53 385.0 21.2 242 65-328 2-366 (429)
4 PLN02530 histidine-tRNA ligase 100.0 1E-45 2.2E-50 372.1 26.9 249 60-328 63-432 (487)
5 PRK12420 histidyl-tRNA synthet 100.0 1.8E-45 3.8E-50 364.8 24.9 246 66-328 3-368 (423)
6 PRK12292 hisZ ATP phosphoribos 100.0 4.6E-45 9.9E-50 358.4 23.5 236 67-328 3-358 (391)
7 PRK12421 ATP phosphoribosyltra 100.0 4.4E-43 9.5E-48 344.3 23.4 235 67-328 7-361 (392)
8 CHL00201 syh histidine-tRNA sy 100.0 1.6E-39 3.5E-44 322.8 19.7 129 187-328 228-356 (430)
9 TIGR00442 hisS histidyl-tRNA s 100.0 4.7E-38 1E-42 308.9 24.1 236 68-328 1-353 (397)
10 TIGR00443 hisZ_biosyn_reg ATP 100.0 4.1E-37 8.8E-42 294.0 20.6 194 74-283 1-313 (314)
11 PF13393 tRNA-synt_His: Histid 100.0 4.6E-37 1E-41 292.3 15.2 192 72-278 1-311 (311)
12 PRK00037 hisS histidyl-tRNA sy 100.0 4.1E-35 8.9E-40 289.3 19.9 124 189-328 226-349 (412)
13 PRK12295 hisZ ATP phosphoribos 100.0 2.9E-33 6.2E-38 272.9 20.4 165 109-281 147-370 (373)
14 PRK12293 hisZ ATP phosphoribos 100.0 1E-31 2.2E-36 252.9 16.8 190 67-283 5-280 (281)
15 COG3705 HisZ ATP phosphoribosy 100.0 6.9E-29 1.5E-33 240.3 14.9 235 65-324 1-352 (390)
16 cd00773 HisRS-like_core Class 100.0 7.6E-29 1.6E-33 230.9 14.6 87 190-282 174-260 (261)
17 PRK12294 hisZ ATP phosphoribos 99.9 4.8E-21 1E-25 179.5 15.0 67 187-260 201-267 (272)
18 KOG1035|consensus 99.8 2.2E-19 4.7E-24 190.1 20.2 212 109-328 1070-1290(1351)
19 TIGR00418 thrS threonyl-tRNA s 99.8 4.5E-19 9.8E-24 181.9 13.4 244 69-328 188-501 (563)
20 PRK12444 threonyl-tRNA synthet 99.7 1.7E-16 3.7E-21 165.3 12.0 240 69-328 262-573 (639)
21 PRK12305 thrS threonyl-tRNA sy 99.4 1.1E-12 2.3E-17 135.3 12.0 244 68-328 193-507 (575)
22 PRK00413 thrS threonyl-tRNA sy 99.3 2.7E-11 5.8E-16 126.3 14.1 122 196-328 439-570 (638)
23 PRK04173 glycyl-tRNA synthetas 99.2 2.6E-11 5.6E-16 121.7 10.1 130 193-328 232-395 (456)
24 PRK14799 thrS threonyl-tRNA sy 99.0 5.2E-10 1.1E-14 114.4 8.3 45 64-108 149-195 (545)
25 PLN02908 threonyl-tRNA synthet 98.9 1.6E-09 3.4E-14 114.0 4.6 41 68-108 308-348 (686)
26 cd00938 HisRS_RNA HisRS_RNA bi 98.8 9.3E-09 2E-13 69.5 5.0 41 5-46 2-42 (45)
27 cd00939 MetRS_RNA MetRS_RNA bi 98.6 7.1E-08 1.5E-12 65.3 4.5 42 7-49 2-43 (45)
28 PF00458 WHEP-TRS: WHEP-TRS do 98.4 5E-07 1.1E-11 64.7 5.8 46 6-52 1-46 (56)
29 TIGR00408 proS_fam_I prolyl-tR 98.3 3.1E-06 6.7E-11 85.6 10.1 50 68-117 25-74 (472)
30 PRK12325 prolyl-tRNA synthetas 98.3 2.1E-05 4.6E-10 78.9 15.3 52 67-118 33-84 (439)
31 PRK08661 prolyl-tRNA synthetas 97.9 8.9E-05 1.9E-09 75.2 11.9 47 69-115 32-78 (477)
32 cd00779 ProRS_core_prok Prolyl 97.5 8.6E-05 1.9E-09 69.2 3.4 54 65-118 15-68 (255)
33 cd00936 WEPRS_RNA WEPRS_RNA bi 97.2 0.00063 1.4E-08 47.5 4.4 43 7-50 2-44 (50)
34 cd00774 GlyRS-like_core Glycyl 97.2 0.00029 6.3E-09 65.6 3.2 49 68-116 19-69 (254)
35 cd00772 ProRS_core Prolyl-tRNA 97.1 0.00033 7.1E-09 65.7 3.2 50 69-118 20-69 (264)
36 cd01200 WHEPGMRS_RNA EPRS-like 97.1 0.001 2.3E-08 44.5 4.7 38 8-46 2-39 (42)
37 PLN02837 threonine-tRNA ligase 97.0 0.023 5.1E-07 59.5 16.1 50 69-118 235-284 (614)
38 PRK09194 prolyl-tRNA synthetas 97.0 0.00062 1.3E-08 70.5 3.8 53 65-117 31-83 (565)
39 cd00670 Gly_His_Pro_Ser_Thr_tR 97.0 0.0037 8.1E-08 56.7 8.5 38 81-118 2-39 (235)
40 cd00771 ThrRS_core Threonyl-tR 96.9 0.00061 1.3E-08 64.9 3.1 50 69-118 18-67 (298)
41 PLN02734 glycyl-tRNA synthetas 96.7 0.028 6E-07 59.2 13.2 104 4-108 10-137 (684)
42 PRK03991 threonyl-tRNA synthet 96.6 0.019 4.2E-07 60.0 11.4 39 70-108 216-254 (613)
43 TIGR00409 proS_fam_II prolyl-t 96.3 0.0036 7.8E-08 64.9 4.0 53 65-117 31-83 (568)
44 PLN02850 aspartate-tRNA ligase 96.1 0.046 1E-06 56.3 11.0 28 81-108 225-252 (530)
45 cd00778 ProRS_core_arch_euk Pr 96.0 0.005 1.1E-07 57.6 3.0 46 69-114 20-65 (261)
46 TIGR00470 sepS O-phosphoseryl- 95.0 1.6 3.6E-05 44.2 16.6 87 191-283 244-332 (533)
47 PTZ00401 aspartyl-tRNA synthet 94.9 0.34 7.4E-06 50.2 12.2 28 81-108 213-240 (550)
48 PRK09194 prolyl-tRNA synthetas 94.8 0.043 9.3E-07 57.0 5.4 58 269-328 437-502 (565)
49 COG0441 ThrS Threonyl-tRNA syn 94.5 0.23 4.9E-06 51.8 9.7 47 62-108 199-247 (589)
50 cd00859 HisRS_anticodon HisRS 94.0 0.065 1.4E-06 40.3 3.6 31 298-328 2-32 (91)
51 cd00935 GlyRS_RNA GlyRS_RNA bi 94.0 0.17 3.6E-06 35.3 5.3 41 5-46 3-43 (51)
52 cd00860 ThrRS_anticodon ThrRS 93.9 0.068 1.5E-06 40.8 3.6 32 297-328 1-32 (91)
53 TIGR00389 glyS_dimeric glycyl- 93.4 0.12 2.6E-06 53.4 5.4 45 64-108 14-65 (551)
54 COG3705 HisZ ATP phosphoribosy 93.3 0.01 2.2E-07 58.6 -2.6 67 205-281 317-384 (390)
55 COG0017 AsnS Aspartyl/asparagi 92.5 0.16 3.4E-06 50.9 4.5 29 80-108 133-161 (435)
56 PRK04172 pheS phenylalanyl-tRN 92.5 0.075 1.6E-06 54.2 2.3 43 64-108 217-259 (489)
57 cd00738 HGTP_anticodon HGTP an 91.2 0.29 6.2E-06 37.4 3.9 31 298-328 2-35 (94)
58 cd00858 GlyRS_anticodon GlyRS 91.0 0.27 6E-06 40.2 3.8 33 296-328 25-59 (121)
59 cd00861 ProRS_anticodon_short 88.7 0.59 1.3E-05 35.9 3.8 31 298-328 2-35 (94)
60 PRK06462 asparagine synthetase 87.2 0.59 1.3E-05 45.4 3.5 30 79-108 28-57 (335)
61 PRK14938 Ser-tRNA(Thr) hydrola 85.3 1.7 3.6E-05 43.0 5.5 84 245-328 214-305 (387)
62 cd00770 SerRS_core Seryl-tRNA 84.5 0.97 2.1E-05 43.1 3.5 48 72-119 43-90 (297)
63 PF15640 Tox-MPTase4: Metallop 83.2 2.2 4.7E-05 35.5 4.5 37 191-229 20-63 (132)
64 PF00587 tRNA-synt_2b: tRNA sy 82.0 0.52 1.1E-05 40.9 0.5 37 83-119 1-38 (173)
65 COG2269 Truncated, possibly in 80.7 13 0.00027 35.5 9.2 30 79-108 14-43 (322)
66 TIGR00462 genX lysyl-tRNA synt 80.5 0.97 2.1E-05 43.3 1.8 27 82-108 2-28 (304)
67 cd00776 AsxRS_core Asx tRNA sy 80.5 1.2 2.5E-05 43.1 2.4 32 77-108 20-51 (322)
68 PLN02532 asparagine-tRNA synth 80.4 1.6 3.4E-05 46.0 3.4 29 80-108 234-262 (633)
69 PLN02734 glycyl-tRNA synthetas 78.4 2.7 5.9E-05 44.6 4.4 63 266-328 528-603 (684)
70 PLN02320 seryl-tRNA synthetase 77.1 23 0.00049 36.5 10.5 49 71-119 221-271 (502)
71 PTZ00425 asparagine-tRNA ligas 76.7 2.5 5.4E-05 44.2 3.6 29 80-108 214-242 (586)
72 PRK00488 pheS phenylalanyl-tRN 76.5 8.8 0.00019 37.4 7.1 58 63-122 91-149 (339)
73 PRK09350 poxB regulator PoxA; 76.2 1.7 3.7E-05 41.7 2.1 29 80-108 4-32 (306)
74 PF01409 tRNA-synt_2d: tRNA sy 75.6 14 0.0003 34.4 7.9 186 83-283 18-228 (247)
75 TIGR00468 pheS phenylalanyl-tR 75.3 7.5 0.00016 37.0 6.2 57 63-121 55-112 (294)
76 TIGR00414 serS seryl-tRNA synt 70.4 4.7 0.0001 40.4 3.7 48 73-120 165-212 (418)
77 cd00669 Asp_Lys_Asn_RS_core As 70.1 2.3 5E-05 40.0 1.4 27 82-108 2-28 (269)
78 PLN02603 asparaginyl-tRNA synt 69.5 4 8.8E-05 42.5 3.1 28 81-108 226-253 (565)
79 cd00669 Asp_Lys_Asn_RS_core As 69.1 3.5 7.6E-05 38.8 2.4 34 250-285 222-255 (269)
80 PF00152 tRNA-synt_2: tRNA syn 68.9 4.3 9.3E-05 39.1 3.0 29 80-108 21-49 (335)
81 cd00768 class_II_aaRS-like_cor 67.0 4.8 0.0001 35.1 2.7 37 84-120 2-38 (211)
82 COG4038 Predicted membrane pro 65.2 3.7 8.1E-05 30.9 1.4 29 242-273 19-47 (87)
83 TIGR02367 PylS pyrrolysyl-tRNA 64.4 5.1 0.00011 40.5 2.5 40 81-120 239-278 (453)
84 cd00776 AsxRS_core Asx tRNA sy 64.2 4.9 0.00011 38.7 2.4 21 265-285 288-308 (322)
85 cd00777 AspRS_core Asp tRNA sy 62.9 5.6 0.00012 37.6 2.5 27 82-108 2-28 (280)
86 TIGR00389 glyS_dimeric glycyl- 62.3 7.1 0.00015 40.6 3.2 63 266-328 414-490 (551)
87 KOG1885|consensus 60.0 15 0.00032 37.3 4.9 28 81-108 225-252 (560)
88 PRK09537 pylS pyrolysyl-tRNA s 58.0 7.5 0.00016 39.0 2.5 37 84-120 206-242 (417)
89 cd00777 AspRS_core Asp tRNA sy 57.2 5.6 0.00012 37.6 1.4 32 252-285 235-266 (280)
90 COG0423 GRS1 Glycyl-tRNA synth 57.1 18 0.00039 37.3 5.0 39 70-108 29-69 (558)
91 PRK09350 poxB regulator PoxA; 55.9 7.2 0.00016 37.3 1.9 31 252-284 268-299 (306)
92 PRK05431 seryl-tRNA synthetase 55.9 10 0.00023 38.0 3.1 47 73-119 162-209 (425)
93 PRK06462 asparagine synthetase 55.9 7.6 0.00016 37.7 2.1 52 228-285 247-317 (335)
94 cd00775 LysRS_core Lys_tRNA sy 55.0 7.4 0.00016 37.6 1.9 28 81-108 8-35 (329)
95 PLN02221 asparaginyl-tRNA synt 54.3 11 0.00023 39.5 2.9 20 265-284 534-553 (572)
96 TIGR00462 genX lysyl-tRNA synt 54.0 7.7 0.00017 37.1 1.8 31 252-284 263-294 (304)
97 TIGR00458 aspS_arch aspartyl-t 53.8 8.7 0.00019 38.6 2.2 29 80-108 132-160 (428)
98 KOG1637|consensus 53.4 15 0.00033 37.3 3.7 52 67-118 178-229 (560)
99 PRK03932 asnC asparaginyl-tRNA 52.4 9.4 0.0002 38.6 2.2 28 81-108 133-160 (450)
100 PRK05159 aspC aspartyl-tRNA sy 52.2 10 0.00022 38.2 2.4 30 79-108 134-163 (437)
101 cd00775 LysRS_core Lys_tRNA sy 50.2 12 0.00026 36.2 2.5 29 254-284 286-314 (329)
102 PRK05159 aspC aspartyl-tRNA sy 48.9 13 0.00028 37.4 2.6 21 265-285 399-419 (437)
103 COG0173 AspS Aspartyl-tRNA syn 48.2 18 0.00039 37.5 3.4 29 80-108 140-168 (585)
104 PLN02678 seryl-tRNA synthetase 48.2 16 0.00035 37.0 3.1 48 75-122 167-215 (448)
105 TIGR00458 aspS_arch aspartyl-t 48.1 13 0.00029 37.3 2.5 20 265-284 390-409 (428)
106 COG0423 GRS1 Glycyl-tRNA synth 45.9 14 0.00031 38.0 2.3 62 266-327 415-489 (558)
107 PRK03932 asnC asparaginyl-tRNA 45.3 16 0.00034 37.0 2.5 21 265-285 412-432 (450)
108 PF00152 tRNA-synt_2: tRNA syn 44.6 13 0.00028 35.8 1.8 32 252-285 290-321 (335)
109 PRK00413 thrS threonyl-tRNA sy 44.4 7 0.00015 41.1 -0.2 49 68-116 257-305 (638)
110 COG0442 ProS Prolyl-tRNA synth 44.1 26 0.00057 36.0 3.9 46 69-114 35-80 (500)
111 KOG2324|consensus 44.1 38 0.00082 33.5 4.7 45 64-108 35-79 (457)
112 PLN02603 asparaginyl-tRNA synt 44.0 15 0.00032 38.4 2.1 42 243-284 486-546 (565)
113 PTZ00417 lysine-tRNA ligase; P 44.0 15 0.00032 38.6 2.1 28 81-108 253-280 (585)
114 PRK00484 lysS lysyl-tRNA synth 43.3 17 0.00037 37.2 2.4 29 80-108 171-199 (491)
115 PLN02532 asparagine-tRNA synth 41.9 16 0.00036 38.5 2.1 42 244-285 555-615 (633)
116 TIGR00499 lysS_bact lysyl-tRNA 41.0 18 0.00039 37.2 2.1 29 80-108 171-199 (496)
117 TIGR00457 asnS asparaginyl-tRN 40.6 17 0.00038 36.8 2.0 28 81-108 136-163 (453)
118 PRK12820 bifunctional aspartyl 40.6 20 0.00042 38.5 2.4 29 80-108 155-183 (706)
119 TIGR00459 aspS_bact aspartyl-t 40.5 19 0.00042 37.7 2.3 28 81-108 138-165 (583)
120 PRK12445 lysyl-tRNA synthetase 40.5 17 0.00037 37.4 1.9 29 80-108 183-211 (505)
121 PTZ00425 asparagine-tRNA ligas 40.2 18 0.0004 37.9 2.1 42 243-284 507-567 (586)
122 PRK00960 seryl-tRNA synthetase 40.2 21 0.00046 36.8 2.5 49 70-118 212-261 (517)
123 PTZ00417 lysine-tRNA ligase; P 40.1 18 0.00039 37.9 2.1 32 252-285 537-569 (585)
124 PLN02502 lysyl-tRNA synthetase 40.1 18 0.00039 37.7 2.0 29 80-108 228-256 (553)
125 PRK12445 lysyl-tRNA synthetase 40.1 19 0.0004 37.1 2.1 20 265-284 469-488 (505)
126 TIGR00499 lysS_bact lysyl-tRNA 39.7 18 0.00039 37.1 2.0 21 265-285 460-480 (496)
127 PLN02221 asparaginyl-tRNA synt 39.2 20 0.00044 37.4 2.3 29 80-108 170-198 (572)
128 PRK00484 lysS lysyl-tRNA synth 39.2 20 0.00042 36.8 2.1 32 252-285 443-475 (491)
129 PF03129 HGTP_anticodon: Antic 38.9 23 0.00049 27.0 2.0 21 308-328 13-33 (94)
130 PTZ00385 lysyl-tRNA synthetase 38.5 19 0.00042 38.2 2.0 29 80-108 232-260 (659)
131 TIGR00409 proS_fam_II prolyl-t 37.8 51 0.0011 34.5 4.9 80 248-327 417-506 (568)
132 PRK00476 aspS aspartyl-tRNA sy 37.6 21 0.00045 37.5 2.0 29 80-108 140-168 (588)
133 cd02685 MIT_C MIT_C; domain fo 37.1 44 0.00095 28.8 3.6 28 190-217 68-95 (148)
134 PRK00476 aspS aspartyl-tRNA sy 36.9 24 0.00051 37.1 2.3 17 267-283 528-544 (588)
135 COG1190 LysU Lysyl-tRNA synthe 36.7 1.2E+02 0.0026 31.2 7.2 27 82-108 181-207 (502)
136 KOG2395|consensus 36.5 20 0.00043 37.0 1.6 59 205-273 399-474 (644)
137 PLN02502 lysyl-tRNA synthetase 36.0 25 0.00054 36.6 2.3 29 255-285 509-537 (553)
138 COG2269 Truncated, possibly in 34.6 23 0.00049 33.9 1.6 19 267-285 290-308 (322)
139 KOG3156|consensus 34.3 1.6E+02 0.0036 26.8 6.9 40 109-148 49-88 (220)
140 TIGR00457 asnS asparaginyl-tRN 33.9 27 0.00058 35.4 2.1 21 265-285 415-435 (453)
141 TIGR00415 serS_MJ seryl-tRNA s 33.7 30 0.00065 35.7 2.4 49 70-118 212-261 (520)
142 cd00677 S15_NS1_EPRS_RNA-bind 32.9 69 0.0015 21.4 3.4 37 8-45 2-45 (46)
143 PRK13590 putative bifunctional 31.7 4.1E+02 0.0089 27.8 10.5 156 72-256 94-273 (591)
144 PTZ00385 lysyl-tRNA synthetase 31.7 27 0.00059 37.1 1.8 29 255-285 522-550 (659)
145 cd03347 eu_PheOH Eukaryotic ph 30.7 63 0.0014 31.1 3.9 63 73-140 58-123 (306)
146 KOG1637|consensus 29.9 83 0.0018 32.2 4.7 53 274-327 437-489 (560)
147 PRK02983 lysS lysyl-tRNA synth 29.8 33 0.00071 38.8 2.1 28 81-108 770-797 (1094)
148 KOG2509|consensus 28.4 90 0.0019 31.5 4.6 42 79-120 183-224 (455)
149 smart00454 SAM Sterile alpha m 28.4 1.3E+02 0.0029 20.6 4.5 46 89-134 19-65 (68)
150 TIGR00468 pheS phenylalanyl-tR 27.7 2.9E+02 0.0063 26.2 7.9 82 192-282 187-272 (294)
151 KOG0554|consensus 27.0 37 0.00081 33.8 1.7 33 76-108 127-159 (446)
152 TIGR00459 aspS_bact aspartyl-t 26.8 41 0.00089 35.3 2.1 33 251-285 509-541 (583)
153 cd03345 eu_TyrOH Eukaryotic ty 26.3 85 0.0018 30.1 3.9 69 67-140 51-122 (298)
154 PF02742 Fe_dep_repr_C: Iron d 26.2 2.6E+02 0.0055 20.3 5.8 41 109-166 17-58 (71)
155 PRK06253 O-phosphoseryl-tRNA s 25.8 1.2E+02 0.0026 31.4 5.1 87 192-284 246-334 (529)
156 COG4927 Predicted choloylglyci 25.8 43 0.00093 31.8 1.8 55 215-275 110-178 (336)
157 PLN02903 aminoacyl-tRNA ligase 25.6 45 0.00097 35.5 2.1 29 80-108 202-231 (652)
158 PLN02903 aminoacyl-tRNA ligase 25.4 45 0.00097 35.5 2.1 11 297-307 455-465 (652)
159 PRK13799 unknown domain/N-carb 24.9 6.7E+02 0.014 26.3 10.7 159 72-259 94-276 (591)
160 PF01812 5-FTHF_cyc-lig: 5-for 24.3 45 0.00098 29.0 1.6 28 248-275 138-165 (186)
161 PRK06253 O-phosphoseryl-tRNA s 23.9 7.7E+02 0.017 25.7 10.5 66 67-132 26-120 (529)
162 KOG4509|consensus 23.5 1.1E+02 0.0024 27.3 3.8 39 186-224 163-216 (247)
163 PTZ00326 phenylalanyl-tRNA syn 23.3 4.1E+02 0.0089 27.4 8.4 83 192-282 394-478 (494)
164 PF05565 Sipho_Gp157: Siphovir 23.3 3.5E+02 0.0076 23.2 7.0 48 26-108 54-101 (162)
165 PLN00190 60S ribosomal protein 23.0 1.2E+02 0.0027 26.3 4.0 48 198-252 27-84 (158)
166 PF07775 PaRep2b: PaRep2b prot 22.8 1.1E+02 0.0023 31.4 4.0 32 245-277 174-208 (512)
167 cd04790 HTH_Cfa-like_unk Helix 22.6 5.1E+02 0.011 22.4 9.5 29 68-101 32-60 (172)
168 PRK15008 HTH-type transcriptio 22.6 3.1E+02 0.0067 24.0 6.8 35 82-121 18-52 (212)
169 PRK11640 putative transcriptio 22.0 4E+02 0.0086 23.1 7.3 34 83-121 2-35 (191)
170 cd03348 pro_PheOH Prokaryotic 22.0 1.2E+02 0.0026 27.9 4.0 63 69-140 4-69 (228)
171 COG2139 RPL21A Ribosomal prote 21.6 1.3E+02 0.0027 24.1 3.4 33 198-230 26-65 (98)
172 cd00166 SAM Sterile alpha moti 21.5 1.9E+02 0.0041 19.6 4.2 42 89-133 17-61 (63)
173 TIGR03060 PS_II_psb29 photosys 21.0 3.6E+02 0.0079 24.6 6.8 23 109-131 76-98 (214)
174 TIGR01267 Phe4hydrox_mono phen 20.9 1.3E+02 0.0028 28.1 4.0 63 69-140 4-69 (248)
175 cd02426 Pol_gamma_b_Cterm C-te 20.9 1.6E+02 0.0036 24.2 4.2 34 294-327 24-60 (128)
176 PRK14894 glycyl-tRNA synthetas 20.5 51 0.0011 34.1 1.3 47 69-115 28-76 (539)
177 KOG0554|consensus 20.4 62 0.0013 32.3 1.8 20 265-284 408-427 (446)
178 PF08232 Striatin: Striatin fa 20.3 4.4E+02 0.0094 22.0 6.7 36 70-106 97-132 (134)
179 TIGR03384 betaine_BetI transcr 20.2 5.2E+02 0.011 21.6 8.3 37 81-122 7-43 (189)
180 KOG2525|consensus 20.2 83 0.0018 32.2 2.7 75 193-279 130-205 (496)
No 1
>KOG1936|consensus
Probab=100.00 E-value=1.3e-83 Score=612.07 Aligned_cols=316 Identities=53% Similarity=0.840 Sum_probs=297.0
Q ss_pred hHHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCccccccccccccccceeCCCCCccCCchhHH
Q psy13909 3 RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMV 82 (328)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkGtrD~~p~~~~ 82 (328)
+..+.+.++.|++++|.|+ +.+++.++|.++|+++++++++++. ++..++++|++++|||||||.|+||+
T Consensus 6 ~~~~~~~~~~~~~llr~l~-~~~a~~~~~~~~va~~~~~~~~~~~---------~~~~~~~k~~lKtPKGTrD~~p~qm~ 75 (518)
T KOG1936|consen 6 LVTTRESISFQGILLRDLK-SSCASPEQISEEVALILALKNGLGR---------SGSIFKKKFSLKTPKGTRDFSPEQMA 75 (518)
T ss_pred HHHHHHHHhhhHHHHhhhh-hccCChhHhhHHHHHHHHHhcccCC---------CCCCcCcceeecCCCCCCcCCHHHHH
Confidence 4677899999999999999 9999999999999999999999863 12236899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccchHHH------------------------------------------------------
Q psy13909 83 LRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------------------------ 108 (328)
Q Consensus 83 ~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------------------------ 108 (328)
+|++|+++|.++|++||+++||||+|
T Consensus 76 lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~sikRy~ 155 (518)
T KOG1936|consen 76 LREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSIKRYH 155 (518)
T ss_pred HHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccceeee
Confidence 99999999999999999999999999
Q ss_pred ----------------------------------------------------------------HHHHHHHHcCCChhhH
Q psy13909 109 ----------------------------------------------------------------LLDGLFESCGVPAKQF 124 (328)
Q Consensus 109 ----------------------------------------------------------------il~~il~~~Gi~~~~~ 124 (328)
|+|+||+.||||++++
T Consensus 156 iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~f 235 (518)
T KOG1936|consen 156 IAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKF 235 (518)
T ss_pred EEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCccceEEEecHHHHHHHHHHHhCCCHHHh
Confidence 9999999999999999
Q ss_pred HHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhhhHHhHHHHHHHHHHHHH
Q psy13909 125 RTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDI 204 (328)
Q Consensus 125 ~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e~l~~L~~l~~~L~~ 204 (328)
++||++|||+||++|++|++||+.++||+++.+|+|++|+.++|..++++++.++|.+..|+.+.+|+++|+.|++||+.
T Consensus 236 rtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~ 315 (518)
T KOG1936|consen 236 RTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEALADLKQLFEYLEI 315 (518)
T ss_pred hhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEccCCccCCccccceEEEEEEcCC----c-----c----CCccccccccCccchhhhhhcCCCCCCCCeeEE
Q psy13909 205 YELTDKVIFDLSLARGLDYYTGIIYEAVLIGD----R-----K----KGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGI 271 (328)
Q Consensus 205 ~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~----~-----~----~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGf 271 (328)
||++++|+||+||+||||||||+|||++..+. + + .+.++||||+|||||||++||++++..+||||+
T Consensus 316 fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~ 395 (518)
T KOG1936|consen 316 FGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQ 395 (518)
T ss_pred cCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCcchhhHHHHhccccCcCCccce
Confidence 99999999999999999999999999999651 0 0 112578999999999999999998889999999
Q ss_pred eeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 272 SIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 272 siglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|+|+||||++|+++......+.|++.++|||++++++++.+|++++++||++||++|
T Consensus 396 S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE 452 (518)
T KOG1936|consen 396 SVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAE 452 (518)
T ss_pred eehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchh
Confidence 999999999999988766667899999999999999999999999999999999986
No 2
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=1.3e-54 Score=447.10 Aligned_cols=259 Identities=48% Similarity=0.824 Sum_probs=231.9
Q ss_pred cccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH----------------------------------
Q psy13909 63 VKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC---------------------------------- 108 (328)
Q Consensus 63 ~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf---------------------------------- 108 (328)
.+|.+++|+|||||+|++|..|++|++++.++|++|||++|+||+|
T Consensus 323 ~~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDl 402 (763)
T PLN02972 323 VRRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDL 402 (763)
T ss_pred hhcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCC
Confidence 4888999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 403 TvPiAR~vA~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~df~I~INh 482 (763)
T PLN02972 403 TVPFARYVAMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIGTYEVKLNH 482 (763)
T ss_pred hHHHHHHHHhCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCCceEEEeCC
Confidence
Q ss_pred --HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCH-HHHHHHhccc-cccc
Q psy13909 109 --LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHK-ELVEKFMQDD-LLKT 184 (328)
Q Consensus 109 --il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~-~~l~~l~~~~-~l~~ 184 (328)
+++++|+.||+|++.++.+++++|++++.+|++++++|++++|++++.+++|.+++.++|++ ++++++.... .+..
T Consensus 483 ~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~ 562 (763)
T PLN02972 483 RKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLRQEGSEFLG 562 (763)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999999999999888999999999999999999974 7888775421 2445
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCC
Q psy13909 185 SKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQR 264 (328)
Q Consensus 185 ~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~ 264 (328)
+..+.+++++|+.++++|+.+|+.++|+|||+++||+|||||+|||+|..+. ..++||+|||||+|+++|+ |+
T Consensus 563 ~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~-----~~gsIagGGRYD~Lv~~Fg--G~ 635 (763)
T PLN02972 563 NASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGA-----QVGSIAAGGRYDNLVGMFS--GK 635 (763)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCC-----ccceeeecCCchhHHHhcC--CC
Confidence 6778899999999999999999988899999999999999999999998752 3479999999999999997 57
Q ss_pred CCCeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 265 NVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
++||||||||+|||+.+|++....+...++.++++|||++.+.+.+.++++++++||++||+||
T Consensus 636 ~vPAVGFSiGIERL~~~L~~~~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE 699 (763)
T PLN02972 636 QVPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAE 699 (763)
T ss_pred CCCEEEEEecHHHHHHHHHHcccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999998754321111345668999999988888999999999999999986
No 3
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-49 Score=385.02 Aligned_cols=242 Identities=33% Similarity=0.527 Sum_probs=200.1
Q ss_pred cceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH------------------------------------
Q psy13909 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------ 108 (328)
Q Consensus 65 ~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------ 108 (328)
+.+++||||+||+|++|..|++|+++++++|++|||++|+||+|
T Consensus 2 ~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRp 81 (429)
T COG0124 2 MKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRP 81 (429)
T ss_pred CCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecc
Confidence 45788999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 82 e~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~~~~l 161 (429)
T COG0124 82 ELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIGGFTL 161 (429)
T ss_pred cCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCCcEEE
Confidence
Q ss_pred ------HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCC-HHHHHHHhcccc
Q psy13909 109 ------LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGH-KELVEKFMQDDL 181 (328)
Q Consensus 109 ------il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~-~~~l~~l~~~~~ 181 (328)
+++++++++|+ ++...+++.+|+++|. ++.+ +.+.+..+...+.|..+....+. .+.++.+ |.
T Consensus 162 ~iN~~g~l~~~~~~~gi--~~~~~l~~~ldk~~k~----~~~~-L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~a---p~ 231 (429)
T COG0124 162 EINSRGILEGRLEYLGI--DQREALLRYLDKLDKI----GKLE-LDEDSKRRLKTNPLRVLDSKKDSDQELLKNA---PE 231 (429)
T ss_pred EEcCcccHHHHHHhhcc--hhHHHHHHHHhhhhhH----HHHH-hhhhhhhhhhhchHHHHHhccchHHHHHhcc---HH
Confidence 66777777777 5677899999999887 3333 23334445566777777766654 2333333 34
Q ss_pred ccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCC
Q psy13909 182 LKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDP 261 (328)
Q Consensus 182 l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~ 261 (328)
+... ...+++++++.+.++|+.+|+ ++.+||++|||||||||+|||+++...+ .+++||||||||+|++.||
T Consensus 232 i~~~-~~~e~~~~~~~v~~~L~~~g~--~~~id~~lvRGLDYYtg~VFE~~~~~~~----~~~sI~gGGRYD~Lv~~~g- 303 (429)
T COG0124 232 LLDY-LDEESLEHLEELLALLDALGI--SYEIDPSLVRGLDYYTGTVFEAVTDGLG----AQGSVCGGGRYDGLVEEFG- 303 (429)
T ss_pred hhhh-ccHHHHHHHHHHHHHHHHcCC--CEEEccceecchhhccceEEEEEEcCCc----cccceecCccchHHHHHhC-
Confidence 4332 223889999999999999996 4999999999999999999999999854 5789999999999999999
Q ss_pred CCCCCCeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 262 RQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 262 ~g~~vPavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|.++||||||||+|||+.++++.+. ..+..+.++|||++.+++...+++++++.||++||+||
T Consensus 304 -G~~~pavGFaiGveRl~~~l~~~~~---~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~ 366 (429)
T COG0124 304 -GKPTPAVGFAIGVERLILALEEEGK---EDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVE 366 (429)
T ss_pred -CCCCCceeEehHHHHHHHHHHHcCC---CCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEE
Confidence 7899999999999999999998753 13456789999999999877899999999999999985
No 4
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=1e-45 Score=372.10 Aligned_cols=249 Identities=29% Similarity=0.508 Sum_probs=212.2
Q ss_pred ccccccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-------------------------------
Q psy13909 60 YDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC------------------------------- 108 (328)
Q Consensus 60 ~~~~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------- 108 (328)
+.++.+.+++|+|||||+|++|..+++|++.+.++|++|||++|+||+|
T Consensus 63 ~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~L 142 (487)
T PLN02530 63 DGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVAL 142 (487)
T ss_pred ccccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEec
Confidence 3344555899999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 143 RpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~lgl~~~ 222 (487)
T PLN02530 143 RPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGITSS 222 (487)
T ss_pred CCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHcCCCCC
Confidence
Q ss_pred ----------HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhc
Q psy13909 109 ----------LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQ 178 (328)
Q Consensus 109 ----------il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~ 178 (328)
+++++++.++++++.+..++..+|++++.+++++++. +.+.+++.+.++.|..++.+.. .+.+..+.
T Consensus 223 ~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~-L~~~~~~~~~~~~l~~l~~~~~-~~~l~~~~- 299 (487)
T PLN02530 223 DVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKE-LDTLGVSEEAIEGILDVLSLKS-LDDLEALL- 299 (487)
T ss_pred ceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHH-HHHcCCCHHHHHHHHHHHhccC-HHHHHHHh-
Confidence 8888889999998888889999999999999998776 5678999999998888876642 22222221
Q ss_pred cccccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhh
Q psy13909 179 DDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGM 258 (328)
Q Consensus 179 ~~~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~ 258 (328)
. ...+++++|+.++++|+.+|+.++++|||+++||+|||||+|||++.... ..++||+|||||+|++.
T Consensus 300 -----~--~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~-----~~~~I~gGGRYD~Li~~ 367 (487)
T PLN02530 300 -----G--ADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAG-----KLRAICGGGRYDRLLST 367 (487)
T ss_pred -----h--hhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCC-----CcceeeecccHHHHHHH
Confidence 1 23579999999999999999988899999999999999999999998531 35789999999999999
Q ss_pred cCCCCCCCCeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 259 FDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 259 f~~~g~~vPavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|| |.++||||||||++||+.++++.+..+ ....+++|+|++.+++...+++++++.||++|++||
T Consensus 368 fg--g~~~pAvGFa~g~~~l~~~l~~~g~~p---~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~ve 432 (487)
T PLN02530 368 FG--GEDTPACGFGFGDAVIVELLKEKGLLP---ELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVD 432 (487)
T ss_pred hC--CCCCCeeEEEEhHHHHHHHHHhcCCCC---CCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEE
Confidence 98 578999999999999999988654322 233567999999888888899999999999999885
No 5
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-45 Score=364.75 Aligned_cols=246 Identities=29% Similarity=0.528 Sum_probs=213.1
Q ss_pred ceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-------------------------------------
Q psy13909 66 TLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------- 108 (328)
Q Consensus 66 ~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------- 108 (328)
.+++|+||+||+|+++.++++|++++.++|++|||++|+||+|
T Consensus 3 ~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~ 82 (423)
T PRK12420 3 EMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDL 82 (423)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccc
Confidence 4678999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 83 T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~~~~i~l~~ 162 (423)
T PRK12420 83 TIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNLEVTIQYNN 162 (423)
T ss_pred cHHHHHHHHhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCCCEEEEEcC
Confidence
Q ss_pred --HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchh
Q psy13909 109 --LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSK 186 (328)
Q Consensus 109 --il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~ 186 (328)
+++++++.||++++....++.++|++++.+|+++.+.+ .+.+++++.++.|..++.. |+.+.++.+. .+..++
T Consensus 163 ~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l-~~~~l~~~~~~~l~~l~~~-~~~~~~~~~~---~~~~~~ 237 (423)
T PRK12420 163 RKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDL-LERGISEEMADTICNTVLS-CLQLSIADFK---EAFNNP 237 (423)
T ss_pred HHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHH-HHcCCCHHHHHHHHHHHhc-cChhhHHHHH---HhccCH
Confidence 89999999999999888899999999999999987754 5679999999999999954 5555566654 233456
Q ss_pred hhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCC
Q psy13909 187 SALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNV 266 (328)
Q Consensus 187 ~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~v 266 (328)
...+++++|++++++|+.+|+..+++|||+++||++||||+|||+|..+.+ ...+||+|||||+|++.|+..+.++
T Consensus 238 ~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~----~~~~i~~GGRYD~L~~~f~~~~~~~ 313 (423)
T PRK12420 238 LVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGS----ITSSIGSGGRYDNIIGAFRGDDMNY 313 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCC----ccccccCCccHHHHHHHhCCCCCCC
Confidence 788999999999999999999888999999999999999999999997632 2357999999999999997434679
Q ss_pred CeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHH-CCCccC
Q psy13909 267 PCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWK-NGINAD 328 (328)
Q Consensus 267 PavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~-~GI~ae 328 (328)
||||||+++|||+.++..++. ...++||+|++.++. .++++++++||+ +||+|+
T Consensus 314 pAvGfa~~~~~l~~~l~~~~~------~~~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve 368 (423)
T PRK12420 314 PTVGISFGLDVIYTALSQKET------ISSTADVFIIPLGTE--LQCLQIAQQLRSTTGLKVE 368 (423)
T ss_pred CceeEEEcHHHHHHHHHhcCC------CCCCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEE
Confidence 999999999999998876431 224679999997653 579999999999 999985
No 6
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4.6e-45 Score=358.43 Aligned_cols=236 Identities=27% Similarity=0.429 Sum_probs=207.7
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH--------------------------------------
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC-------------------------------------- 108 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf-------------------------------------- 108 (328)
+++|+||||++|+++..+++|++++.++|++|||++|+||+|
T Consensus 3 ~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~ 82 (391)
T PRK12292 3 WQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTA 82 (391)
T ss_pred CCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcH
Confidence 578999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 83 ~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~ 162 (391)
T PRK12292 83 QIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLPNFTLDLGH 162 (391)
T ss_pred HHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCCCeEEEecc
Confidence
Q ss_pred --HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchh
Q psy13909 109 --LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSK 186 (328)
Q Consensus 109 --il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~ 186 (328)
|++++++.||+|++.++.++.+++++|+.+++++.. +++++.++.|..++.++|+.++++++.. +..+.
T Consensus 163 ~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~l~~~~~~~l~~l~~~~g~~~~l~~~~~---~~~~~ 233 (391)
T PRK12292 163 VGLFRALLEAAGLSEELEEVLRRALANKDYVALEELVL------DLSEELRDALLALPRLRGGREVLEEARK---LLPSL 233 (391)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHh------cCCHHHHHHHHHHHHhcCCHHHHHHHHH---hccCh
Confidence 999999999999999999999999999888764432 7899999999999999998888887753 44456
Q ss_pred hhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCC
Q psy13909 187 SALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNV 266 (328)
Q Consensus 187 ~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~v 266 (328)
...+++++|+.++++|+.+|+..+++|||+++||+|||||+|||+|..+. ..+||+|||||+|++.|| +++
T Consensus 234 ~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~------~~~i~~GGRYD~L~~~fg---~~~ 304 (391)
T PRK12292 234 PIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGV------GNPIASGGRYDDLLGRFG---RAR 304 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCC------CCcccCCcchhhHHHHcC---CCC
Confidence 67889999999999999999988899999999999999999999999763 246999999999999995 789
Q ss_pred CeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 267 PCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 267 PavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|||||||++|||+.+ . . ......++++|++.++....+++++++.||++|++|+
T Consensus 305 pAvGfai~ldrl~~~--~-~-----~~~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~ 358 (391)
T PRK12292 305 PATGFSLDLDRLLEL--Q-L-----ELPVEARKDLVIAPDSEALAAALAAAQELRKKGEIVV 358 (391)
T ss_pred CCceEEeeHHHHHhh--c-c-----ccccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEE
Confidence 999999999999984 1 1 1122346788888887778899999999999999875
No 7
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4.4e-43 Score=344.27 Aligned_cols=235 Identities=20% Similarity=0.285 Sum_probs=202.6
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH--------------------------------------
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC-------------------------------------- 108 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf-------------------------------------- 108 (328)
+++|+||||++|+++..+++|++++.++|++|||++|+||+|
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCH
Confidence 468999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 87 ~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~~~~l~ig~~ 166 (392)
T PRK12421 87 QVARIDAHLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVPALHLDLGHV 166 (392)
T ss_pred HHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCCH
Confidence
Q ss_pred -HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhcccccc-chh
Q psy13909 109 -LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLK-TSK 186 (328)
Q Consensus 109 -il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~-~~~ 186 (328)
+++++++.+|+|++..+.++..++++++..++++ +.+.+++++.++.|..++.++|+.+.++++.+. +. .++
T Consensus 167 ~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~----~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~--~~~~~~ 240 (392)
T PRK12421 167 GIFRRLAELAGLSPEEEEELFDLLQRKALPELAEV----CQNLGVGSDLRRMFYALARLNGGLEALDRALSV--LALQDA 240 (392)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHH----HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhh--cccCCH
Confidence 8999999999999999999999999988777644 445689999999999999999988877765431 22 356
Q ss_pred hhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCC
Q psy13909 187 SALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNV 266 (328)
Q Consensus 187 ~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~v 266 (328)
.+.+++++|+.+++.|+.++....+.|||+++||+|||||+|||+|.++ ...+||+|||||+|+++|| .+.
T Consensus 241 ~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~------~~~~i~~GGRYD~L~~~fg---~~~ 311 (392)
T PRK12421 241 AIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPG------RGQALARGGRYDGIGEAFG---RAR 311 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECC------CCCcccCCCCccchhHhhC---CCC
Confidence 7889999999999999998665579999999999999999999999986 3468999999999999996 579
Q ss_pred CeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 267 PCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 267 PavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
||||||||+|||+.+++.. . ..+++|++.++. ..+++++++||++|++|+
T Consensus 312 pAvGfai~lerL~~~l~~~------~----~~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~ 361 (392)
T PRK12421 312 PATGFSMDLKELLALQFLE------E----EAGAILAPWGDD--PDLLAAIAELRQQGERVV 361 (392)
T ss_pred CCceEEeeHHHHHhhcccc------c----CCceEEeecCCc--HHHHHHHHHHHhCCCEEE
Confidence 9999999999999877521 1 126788887654 457899999999999874
No 8
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-39 Score=322.75 Aligned_cols=129 Identities=25% Similarity=0.496 Sum_probs=111.8
Q ss_pred hhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCC
Q psy13909 187 SALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNV 266 (328)
Q Consensus 187 ~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~v 266 (328)
...+++++|+.++++|+.+|+ .++|||+++||+|||||+|||++....+ ..++||+|||||+|+++|| |.++
T Consensus 228 ~~~~~~~~l~~~~~~l~~~g~--~~~~Dl~lvRgldYYTG~vFE~~~~~~~----~~~~i~gGGRYD~L~~~fg--~~~~ 299 (430)
T CHL00201 228 LSLESTEHFYDVCTYLNLLNI--PYKINYKLVRGLDYYNDTAFEIKTLSSN----GQDTICGGGRYDSLIHQLG--GPKT 299 (430)
T ss_pred hhHHHHHHHHHHHHHHHHcCC--cEEECcccccCCccccccEEEEEECCCC----CcceeeeccchHHHHHHhC--CCCC
Confidence 346789999999999999998 4999999999999999999999986532 4578999999999999997 5789
Q ss_pred CeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 267 PCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 267 PavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
||||||+|+|||+.+|.+... ....+++|+|++.+++...+++++++.||++||+|+
T Consensus 300 PavGfa~g~erl~~~l~~~~~-----~~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~ve 356 (430)
T CHL00201 300 PAVGCAIGLERLLLIAKDNII-----LPKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFE 356 (430)
T ss_pred CeeEEEecHHHHHHHHhcccc-----CCCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEE
Confidence 999999999999999876321 122457899999888888899999999999999875
No 9
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=4.7e-38 Score=308.95 Aligned_cols=236 Identities=29% Similarity=0.445 Sum_probs=180.7
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH---------------------------------------
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC--------------------------------------- 108 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf--------------------------------------- 108 (328)
++|+|++|++|.++..++++++.+.++|++|||++|+||+|
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 47999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------HHHHHHHHcCCChh-----
Q psy13909 109 -------------------------------------------------------------LLDGLFESCGVPAK----- 122 (328)
Q Consensus 109 -------------------------------------------------------------il~~il~~~Gi~~~----- 122 (328)
++..++..+|+++-
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~~~~i~i~ 160 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIKDFTLEIN 160 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCCceEEEec
Confidence 44556666666421
Q ss_pred ----------hHHHHHHHhhh-hCccChHHHHHHHHHh-cCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhhhHH
Q psy13909 123 ----------QFRTICSSVDK-LDKWSWEDVRYEMTQE-KGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALV 190 (328)
Q Consensus 123 ----------~~~~i~~~idk-ldk~~~~~v~~el~~~-~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e 190 (328)
....++.++++ +|+.+...+.. ++.. .+++++..+.+..++... ++++. ....+
T Consensus 161 ~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~~ 226 (397)
T TIGR00442 161 SLGILEGRLEYREALLRYLDKHLDKLGEDSVRR-LEKNPLRILDSKNEKIQELLKEA--PKILD-----------FLDEE 226 (397)
T ss_pred CcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHH-HhhccccCchhhhHHHHHHHhcC--HHHHH-----------HhhHH
Confidence 12344555565 45555444332 2222 345555555555543321 12111 12257
Q ss_pred hHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeE
Q psy13909 191 GLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVG 270 (328)
Q Consensus 191 ~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavG 270 (328)
++++|++++++|+.+|+. ++|||+++||++||||+|||+|..+.+ ..++||+|||||+|++.|+ |.+.||||
T Consensus 227 ~~~~l~~l~~~l~~~~~~--i~~dl~~~r~~~YYtG~vFe~~~~~~~----~~~~i~~GGRYD~L~~~f~--~~~~~avG 298 (397)
T TIGR00442 227 SRAHFEELKELLDALGIP--YKIDPSLVRGLDYYTGTVFEFVTDELG----AQGTICGGGRYDGLVEELG--GPPTPAVG 298 (397)
T ss_pred HHHHHHHHHHHHHHcCCC--EEECCccccCchhhcceEEEEEECCCC----ccceeeeccchHHHHHHhC--CCCCceEE
Confidence 899999999999999994 999999999999999999999997632 3478999999999999997 46899999
Q ss_pred EeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 271 ISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 271 fsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|||++|||+.++.+.+..+ ....+++|+|++.+++...++++++++||++||+|+
T Consensus 299 fs~~~~~l~~~l~~~~~~~---~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~ 353 (397)
T TIGR00442 299 FAIGIERLLLLLEELGLEP---PEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVE 353 (397)
T ss_pred eeecHHHHHHHHHhcCCCC---CCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEE
Confidence 9999999999998754321 224567999999888888899999999999999975
No 10
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=4.1e-37 Score=293.97 Aligned_cols=194 Identities=29% Similarity=0.538 Sum_probs=175.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH---------------------------------------------
Q psy13909 74 RDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC--------------------------------------------- 108 (328)
Q Consensus 74 rD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf--------------------------------------------- 108 (328)
+|++|+++..+++|++.+.++|++|||++|+||+|
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~ 80 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTR 80 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHHHHHh
Confidence 69999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q psy13909 109 -------------------------------------------------------------------------LLDGLFE 115 (328)
Q Consensus 109 -------------------------------------------------------------------------il~~il~ 115 (328)
|++++++
T Consensus 81 ~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~~~~i~l~~~~il~~il~ 160 (314)
T TIGR00443 81 LRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLKDFKIELGHVGLVRALLE 160 (314)
T ss_pred cccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCcHHHHHHHHH
Confidence 9999999
Q ss_pred HcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCC-HHHHHHHhccccccchhhhHHhHHH
Q psy13909 116 SCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGH-KELVEKFMQDDLLKTSKSALVGLAA 194 (328)
Q Consensus 116 ~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~-~~~l~~l~~~~~l~~~~~~~e~l~~ 194 (328)
.||+|++..+.++..++++++..+++ ++.+.+++++.++.|..++.+.|+ .+.++++.+ +..+....+++++
T Consensus 161 ~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~---~~~~~~~~~~l~~ 233 (314)
T TIGR00443 161 EAGLPEEAREALREALARKDLVALEE----LLAELGLDPEVRERLLALPRLRGDGEEVLEEARA---LAGSETAEAALDE 233 (314)
T ss_pred HcCCCHHHHHHHHHHHHhcCHHHHHH----HHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHH---hccCHHHHHHHHH
Confidence 99999999999999999999877653 455678999999999999999998 677877753 4445667899999
Q ss_pred HHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeee
Q psy13909 195 IKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIG 274 (328)
Q Consensus 195 L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsig 274 (328)
|+.++++|+.+|+..+|+|||+++||++||||+|||+|..+ ...+||+|||||+|++.|| +++||||||++
T Consensus 234 l~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGivFe~~~~~------~~~~i~~GGRYD~L~~~fg---~~~~AvGfa~~ 304 (314)
T TIGR00443 234 LEAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAPG------LGAPIAGGGRYDNLLGRFG---RPLPATGFALN 304 (314)
T ss_pred HHHHHHHHHHhCCCCeEEEecccccCCCCccceEEEEEECC------CCCcccCCccHHHHHHHcC---CCCCCceEEec
Confidence 99999999999998889999999999999999999999965 3468999999999999996 68999999999
Q ss_pred HHHHHHHHH
Q psy13909 275 VERIFSLIE 283 (328)
Q Consensus 275 lerL~~~l~ 283 (328)
+|||+.++.
T Consensus 305 ~d~l~~~l~ 313 (314)
T TIGR00443 305 LERLLEALT 313 (314)
T ss_pred HHHHHHHhc
Confidence 999988764
No 11
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=4.6e-37 Score=292.32 Aligned_cols=192 Identities=36% Similarity=0.635 Sum_probs=161.9
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-------------------------------------------
Q psy13909 72 GTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------------- 108 (328)
Q Consensus 72 GtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------------- 108 (328)
||+|++|++++.+++|++++.++|++|||++|+||+|
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a 80 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVA 80 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHH
Confidence 8999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q psy13909 109 ---------------------------------------------------------------------------LLDGL 113 (328)
Q Consensus 109 ---------------------------------------------------------------------------il~~i 113 (328)
|++++
T Consensus 81 ~~~~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~~~~i~i~h~~i~~~i 160 (311)
T PF13393_consen 81 RNLNLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLENFTIRINHTGILDAI 160 (311)
T ss_dssp HCCGSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEHHHHHHH
T ss_pred HhcCcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCchhhHHH
Confidence 88899
Q ss_pred HHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhhhHHhHH
Q psy13909 114 FESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLA 193 (328)
Q Consensus 114 l~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e~l~ 193 (328)
++.||+|++..+.++.++++++ +.+++ +++.+.+++++.++.|..++.+.|+.+.+.++.. .+..++.+.++++
T Consensus 161 l~~~gl~~~~~~~l~~~l~~~~---~~~~~-~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~--~~~~~~~~~~~~~ 234 (311)
T PF13393_consen 161 LEHLGLPEDLRRELLEALDKKD---LSELK-ELLSELGLSSESLEILDKLPELEGDPEALEELLE--SLPSSPALQEALE 234 (311)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTH---HHHHH-HHHHHTTTTHHHHHHHHHHHHHHHSHHHHHHHHH--HHTCSCHHHHHHH
T ss_pred HhhcCCChhhhhhhhhheeccc---cccch-hhhcccccchhhhhhhhccccccchHHHHHHHHH--HHhhhhhhHHHHH
Confidence 9999999999999999998876 44443 5667789999999999999999999887776653 2445556788999
Q ss_pred HHHHHHHHHHHcC-CCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEe
Q psy13909 194 AIKLLLSYCDIYE-LTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGIS 272 (328)
Q Consensus 194 ~L~~l~~~L~~~g-i~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfs 272 (328)
+|+.+.++++.+| +..+|+|||+++||++||||+|||++..+. ..+||+|||||+|++.|| +++||||||
T Consensus 235 ~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~~~------~~~ia~GGRYD~L~~~fg---~~~~AvGfa 305 (311)
T PF13393_consen 235 ELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGIVFEVYAPGR------GSPIAGGGRYDNLLEQFG---KPIPAVGFA 305 (311)
T ss_dssp HHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESEEEEEEETTS------SSESEEEEEETTHHHHTT---SS-EEEEEE
T ss_pred HHHHHHHHHHHhcccCceEEEChhhccchhhcCCEEEEEEEcCC------CceEecccChhHHHHHhC---CCCceEEEE
Confidence 9999999999999 678999999999999999999999999863 359999999999999995 789999999
Q ss_pred eeHHHH
Q psy13909 273 IGVERI 278 (328)
Q Consensus 273 iglerL 278 (328)
|++|||
T Consensus 306 i~ld~L 311 (311)
T PF13393_consen 306 IGLDRL 311 (311)
T ss_dssp EEHHHH
T ss_pred EEeccC
Confidence 999997
No 12
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=289.31 Aligned_cols=124 Identities=34% Similarity=0.528 Sum_probs=108.5
Q ss_pred HHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCe
Q psy13909 189 LVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPC 268 (328)
Q Consensus 189 ~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPa 268 (328)
.+++++|+.|.++|+.+|+ ++.|||+++||++||||+|||++....+ ..++||+|||||+|++.|+ |.+.||
T Consensus 226 ~~~~~~l~~l~~~l~~~~~--~i~~Dl~~~r~l~YYtG~vFe~~~~~~g----~~~~i~~GGRYD~L~~~f~--~~~~pa 297 (412)
T PRK00037 226 EESKEHFEELKELLDALGI--PYVIDPRLVRGLDYYTGTVFEFVTDDLG----AQGTVCGGGRYDGLVEQFG--GPPTPA 297 (412)
T ss_pred HHHHHHHHHHHHHHHHcCC--CEEECCCcccChhhccceEEEEEECCCC----ccceeeeccchhHHHHHhC--CCCCce
Confidence 4678899999999999998 5999999999999999999999997532 2468999999999999997 468999
Q ss_pred eEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 269 VGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 269 vGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
||||+++|||+.++.+... .+++|+|++.+++...+++++++.||++||+|+
T Consensus 298 vGfs~~le~l~~~l~~~~~--------~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~ 349 (412)
T PRK00037 298 VGFAIGVERLLLLLEELGE--------EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVE 349 (412)
T ss_pred EEEEEcHHHHHHHHHhcCC--------CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEE
Confidence 9999999999998876531 467999999887777889999999999999875
No 13
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.9e-33 Score=272.89 Aligned_cols=165 Identities=22% Similarity=0.368 Sum_probs=133.9
Q ss_pred HHHHHHHHcCCChhhHHHHHHHhhhhCcc--------------------------------------------------C
Q psy13909 109 LLDGLFESCGVPAKQFRTICSSVDKLDKW--------------------------------------------------S 138 (328)
Q Consensus 109 il~~il~~~Gi~~~~~~~i~~~idkldk~--------------------------------------------------~ 138 (328)
|++++++.+|++++....++.+++++++. .
T Consensus 147 il~~ll~~l~l~~~~~~~l~~~i~kk~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~r~ 226 (373)
T PRK12295 147 LFAALVDALGLPPGWKRRLLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAALADEAAARALVEDLMSIAGISPVGGRS 226 (373)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhccchHHHHHHhhcccccccccchhhhhhhhccchhhhhhhhhhhhhcccccccccc
Confidence 89999999999999888999999988762 1
Q ss_pred hHHHHHHHHHhc------CCCHHHHHHHHHHHhccCCHH-HHHHHhccccccchh-hhHHhHHHHHHHHHHHHHcCCC-c
Q psy13909 139 WEDVRYEMTQEK------GLSKIIADKIGIYVQQHGHKE-LVEKFMQDDLLKTSK-SALVGLAAIKLLLSYCDIYELT-D 209 (328)
Q Consensus 139 ~~~v~~el~~~~------gL~~~~~d~L~~~~~l~g~~~-~l~~l~~~~~l~~~~-~~~e~l~~L~~l~~~L~~~gi~-~ 209 (328)
+.++.+++.... +++++.++.|..++.++|+.+ .++++... ...++ ...+++++|+.++++|+.+|+. +
T Consensus 227 ~~ei~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~l~~l--~~~~~~~~~~al~~L~~l~~~l~~~g~~~~ 304 (373)
T PRK12295 227 PAEIARRLLEKAALAAAARLPAEALAVLERFLAISGPPDAALAALRAL--AADAGLDLDAALDRFEARLAALAARGIDLE 304 (373)
T ss_pred HHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH--hccChHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 222222222211 789999999999999999865 66666531 12234 6788999999999999999996 6
Q ss_pred eEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHHH
Q psy13909 210 KVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSL 281 (328)
Q Consensus 210 ~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~ 281 (328)
++.|||+++||++||||+|||++..+. +.++||+|||||+|++.||. |.++||||||||+|||+.+
T Consensus 305 ~v~~D~~~vrgl~YYTGiVFe~~~~~~-----~~~~I~~GGRYD~Li~~fg~-~~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 305 RLRFSASFGRPLDYYTGFVFEIRAAGN-----GDPPLAGGGRYDGLLTRLGA-GEPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred eEEEecccccCCccccceEEEEEECCC-----CCCcccCCcCHHHHHHHhCC-CCCCCeeEEEEcHHHHHhh
Confidence 799999999999999999999999763 14689999999999999983 3789999999999999754
No 14
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.98 E-value=1e-31 Score=252.93 Aligned_cols=190 Identities=13% Similarity=0.190 Sum_probs=128.4
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH--------------------------------------
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC-------------------------------------- 108 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf-------------------------------------- 108 (328)
+++|+||||++|+++..+++|++++.++|++|||++|+||+|
T Consensus 5 ~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~ 84 (281)
T PRK12293 5 HEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRI 84 (281)
T ss_pred CCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHH
Confidence 568999999999999999999999999999999999999998
Q ss_pred ---------------------------HHHHHHHHcCCChhhHHHHHHH---hhhhCc-----cChHHHHHHHHHhcCCC
Q psy13909 109 ---------------------------LLDGLFESCGVPAKQFRTICSS---VDKLDK-----WSWEDVRYEMTQEKGLS 153 (328)
Q Consensus 109 ---------------------------il~~il~~~Gi~~~~~~~i~~~---idkldk-----~~~~~v~~el~~~~gL~ 153 (328)
+.+.-+|.+|.+.. .+.+.-+ ++++.. .+...+.+.+++..+++
T Consensus 85 ~a~~~~~~~~p~r~~Y~g~vfR~~~rEf~Q~GvEliG~~~~-~Evi~la~~~l~~lgl~~~i~ig~~~i~~~~l~~~~~~ 163 (281)
T PRK12293 85 VTKRLGRSTEHKKWFYIQPVFRYPSNEIYQIGAELIGEEDL-SEILNIAAEIFEELELEPILQISNIKIPKLVAEILGLD 163 (281)
T ss_pred HHHhcccCCCceeEEEeccEEecCCCcccccCeEeeCCCCH-HHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCC
Confidence 22222333333322 1222222 222211 12223334455555555
Q ss_pred HHHH-------------HHHHHHHhccCCHHHHHHHhccccccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccC
Q psy13909 154 KIIA-------------DKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARG 220 (328)
Q Consensus 154 ~~~~-------------d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~Rg 220 (328)
.+.. +.+.+++.+.|. +.++++... .+. ++.++|+.|.+.++.+++. .++|||+++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~----~~~---~~~~~l~~l~~~l~~l~~~-~~~~Dl~~vrg 234 (281)
T PRK12293 164 IEVFKKGQIEKLLAQNVPWLNKLVRIKTL-EDLDEVIEL----VPD---EIKEELEKLKELAESIKYE-NLVIAPLYYAK 234 (281)
T ss_pred HHHHhHHHHHHHHHHhHHHHHHHHhcCCH-HHHHHHHhh----CCH---HHHHHHHHHHHHHHHcCCC-cEEEccccccC
Confidence 4332 234444444442 223333221 112 4455666666777777765 49999999999
Q ss_pred CccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHH
Q psy13909 221 LDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIE 283 (328)
Q Consensus 221 ldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~ 283 (328)
++||||+|||+|.++ .+||+|||||+ .++||||||+|+|||+.+|.
T Consensus 235 l~YYTGivFe~~~~~--------~~i~~GGRYD~---------~~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 235 MRYYDDLFFRFFDGN--------STLASGGNYEI---------DGISSSGFALYTDNLIEILL 280 (281)
T ss_pred CCCccceEEEEEECC--------ceeccccCCCC---------CCCCcceEEeeHHHHHHHhh
Confidence 999999999999863 27999999992 46899999999999998764
No 15
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.96 E-value=6.9e-29 Score=240.30 Aligned_cols=235 Identities=22% Similarity=0.359 Sum_probs=194.3
Q ss_pred cceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH------------------------------------
Q psy13909 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------ 108 (328)
Q Consensus 65 ~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------ 108 (328)
|++.+|.|+||++|.+....++|.+.+.+.|.+|||+.|+||++
T Consensus 1 ~~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T 80 (390)
T COG3705 1 MTWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFT 80 (390)
T ss_pred CCCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEeccccc
Confidence 45789999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 81 ~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~~~~l~LG~~ 160 (390)
T COG3705 81 IPVARIHATLLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLADLKLELGHA 160 (390)
T ss_pred HHHHHHHHHhcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCcCeEEEeccH
Confidence
Q ss_pred -HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhh
Q psy13909 109 -LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKS 187 (328)
Q Consensus 109 -il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~ 187 (328)
|+++++..+++|......+..++.+++....+ ++....+++++..+.+..++.+.|+.+++.++.. .+.....
T Consensus 161 gif~all~~~~l~~~~~~~L~~a~~~k~~~~~~----~~~~~~~~~~~~~~~l~~l~~l~gg~e~l~~~~~--~l~~~~~ 234 (390)
T COG3705 161 GIFRALLAAAGLPGGWRARLRRAFGDKDLLGLE----LLVLAAPLSPELRGRLSELLALLGGREVLERARG--LLDELMA 234 (390)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHhccchhhHH----HHhhccCCChhhhHHHHHHHHHhCCHHHHHHHHH--hhhhhhh
Confidence 89999999999988888899999988877654 3444568899999999999999999998888764 2222222
Q ss_pred hHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCC
Q psy13909 188 ALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVP 267 (328)
Q Consensus 188 ~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vP 267 (328)
...++++++.+.+....++ .++.+|++++|+++||||++|++|.... ..++++|||||+|.+.|+ +..|
T Consensus 235 ~~~al~~~~~l~di~~~~~--e~i~lDLg~l~~~~YyTg~~F~ay~~~~------~~al~~GGRYd~l~~~f~---~~~p 303 (390)
T COG3705 235 QGIALNEGRALADIARRLI--EKIALDLGRLRHFDYYTGLVFLAYADGL------GDALASGGRYDGLLGLFG---RAAP 303 (390)
T ss_pred hhhhhhhhhhHHHHHhccc--hhheehhhcccccchhhceeeeeeeccc------cchhhcccchhhhhhhcC---cccc
Confidence 2678889999998888743 4699999999999999999999998763 468999999999999997 6779
Q ss_pred eeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCC
Q psy13909 268 CVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNG 324 (328)
Q Consensus 268 avGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~G 324 (328)
++||++.++.|..... ...+...++.++...+.......++++++|.+|
T Consensus 304 atGf~~~l~~l~~~~~--------~~~~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g 352 (390)
T COG3705 304 ATGFALRLDALAQGGL--------PLEERRYAALFGRELDYYTGAAFEAAQALRLAG 352 (390)
T ss_pred chhhHhhHHHHHhcCC--------CcccchhhhccCccchhhHHHHHHHHHHhcccC
Confidence 9999999999987111 112344567777766644577889999998555
No 16
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.96 E-value=7.6e-29 Score=230.93 Aligned_cols=87 Identities=48% Similarity=0.802 Sum_probs=79.5
Q ss_pred HhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCee
Q psy13909 190 VGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCV 269 (328)
Q Consensus 190 e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPav 269 (328)
+++++|+.++++|+.+|+..++.|||+++||++||||+|||+|..+.+ ...+||+|||||+|++.|+ |.++|||
T Consensus 174 ~~l~~l~~l~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~~~----~~~~i~~GGRYD~L~~~f~--~~~~~av 247 (261)
T cd00773 174 EALAHLEKLLDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADGLG----AQGSIAGGGRYDGLLEEFG--GEDVPAV 247 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEcCccccCCcccCceEEEEEECCCC----ccCeEeeccCHHHHHHHhC--CCCCCeE
Confidence 889999999999999998888999999999999999999999998632 2468999999999999985 4789999
Q ss_pred EEeeeHHHHHHHH
Q psy13909 270 GISIGVERIFSLI 282 (328)
Q Consensus 270 GfsiglerL~~~l 282 (328)
||||++|||+.++
T Consensus 248 Gfa~~~d~l~~~~ 260 (261)
T cd00773 248 GFAIGLERLLLAL 260 (261)
T ss_pred EEEEcHHHHHHhh
Confidence 9999999999875
No 17
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.86 E-value=4.8e-21 Score=179.46 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=60.5
Q ss_pred hhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcC
Q psy13909 187 SALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFD 260 (328)
Q Consensus 187 ~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~ 260 (328)
...+++++|+.+.+.++.+|+. .++|||+++||++||||+||++|.++. .++|++|||||+|++.||
T Consensus 201 ~~~~~~~~L~~l~~~l~~~~~~-~i~~Dl~~~r~~~YYTG~vF~~y~~~~------~~~i~~GGRYD~Ll~~Fg 267 (272)
T PRK12294 201 NDHPALVELKIWERWLHTQGYK-DIHLDITAQPPRSYYTGLFIQCHFAEN------ESRVLTGGYYKGSIEGFG 267 (272)
T ss_pred hhHHHHHHHHHHHHHHHhcCCC-eEEEcccccCCCCCcCCeEEEEEECCC------CCcccCCcCchhHHHhcC
Confidence 3467899999999999999976 599999999999999999999999863 468999999999999997
No 18
>KOG1035|consensus
Probab=99.83 E-value=2.2e-19 Score=190.10 Aligned_cols=212 Identities=17% Similarity=0.242 Sum_probs=142.6
Q ss_pred HHHHHHHHcCCChhhHHHHHHHhhhh--CccChHHHHHHHHHhcCCCHHHHHHHHHHHhc-----cCCHHHHHHHhcccc
Q psy13909 109 LLDGLFESCGVPAKQFRTICSSVDKL--DKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQ-----HGHKELVEKFMQDDL 181 (328)
Q Consensus 109 il~~il~~~Gi~~~~~~~i~~~idkl--dk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l-----~g~~~~l~~l~~~~~ 181 (328)
+++++|.+||||++++..+..++... .+.+-. .++++.-....+.....+|..++.. .|....+..++. +
T Consensus 1070 LL~Ai~~~~~i~~~~r~~v~~~l~~~~~~r~~~~-~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~l~~~~~--~ 1146 (1351)
T KOG1035|consen 1070 LLEAILSHCGIPKDQRRKVAELLSDMGSSRPQRS-EKELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRFQALKLIRG--K 1146 (1351)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhccccHH-HHHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcchhhhHHHhh--h
Confidence 99999999999999999888876433 122222 2222211122223333344444433 334444444443 3
Q ss_pred ccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCC
Q psy13909 182 LKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDP 261 (328)
Q Consensus 182 l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~ 261 (328)
+.....+. +|++|+.++.+|...|+...+.|+.++.+......|++|++.....+.+......+|+|||||.++..|+.
T Consensus 1147 ~~~~~~vr-~L~eLe~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgRyd~~~~~~~~ 1225 (1351)
T KOG1035|consen 1147 LRADSLVR-ALKELENVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGRYDSLLQEVRD 1225 (1351)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccCCCcCCceeeecccchHHHHHHhhh
Confidence 33445556 99999999999999999999999999888777778999999987654222234579999999999999973
Q ss_pred C-CCCC-CeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 262 R-QRNV-PCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 262 ~-g~~v-PavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
. --.+ +|+|++.-....-.+...-. ..+....|+|+|||.+..++..++.|++.||..||+||
T Consensus 1226 ~~~~~~p~a~gv~~~~~~~~~~~~~~~----~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~ 1290 (1351)
T KOG1035|consen 1226 EQKMNLPGAIGVSALSTIRQHAPKDLE----PIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAE 1290 (1351)
T ss_pred hhhhcCcccceehhhHHHHHhhhcccc----CCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccc
Confidence 1 0113 48888722222222222111 12334579999999998899999999999999999996
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.79 E-value=4.5e-19 Score=181.90 Aligned_cols=244 Identities=17% Similarity=0.120 Sum_probs=152.3
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCC---------------------hhhHHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVP---------------------AKQFRTI 127 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~---------------------~~~~~~i 127 (328)
.++||.||+|..+.+++.|++.+.+.|.++||++|.||+|.-..+|..+|-. ++....+
T Consensus 188 ~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i 267 (563)
T TIGR00418 188 IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGH 267 (563)
T ss_pred cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHH
Confidence 4899999999999999999999999999999999999999555555544411 0111123
Q ss_pred HHHhhhh--C--ccC-----------hH---------HHHHHHH----HhcCCCHHHHHHHHHHHhccCCHHHHHHHh--
Q psy13909 128 CSSVDKL--D--KWS-----------WE---------DVRYEMT----QEKGLSKIIADKIGIYVQQHGHKELVEKFM-- 177 (328)
Q Consensus 128 ~~~idkl--d--k~~-----------~~---------~v~~el~----~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~-- 177 (328)
+.+.... . ..| ++ .+ +++. +-.+-+++....+.+.+.+. .+.+..+-
T Consensus 268 ~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~-reF~q~~~~~~~~~~~~~~e~~~~i~~~--~~~~~~lgl~ 344 (563)
T TIGR00418 268 FLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRV-RGFTQDDAHIFCTEDQIKEEFKNQFRLI--QKVYSDFGFS 344 (563)
T ss_pred HHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccc-cceEEeeeEEEcCHHHHHHHHHHHHHHH--HHHHHHcCCC
Confidence 3222111 0 001 00 00 1111 01122222222222222111 11111110
Q ss_pred --------ccc--cccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccC---Ccccc
Q psy13909 178 --------QDD--LLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKK---GESVG 244 (328)
Q Consensus 178 --------~~~--~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~---~~~~~ 244 (328)
.++ .+..+ .....+...+.+.|+.+|+ .+.+|+. ||++||+.+.||+ ....+.+ +..+.
T Consensus 345 ~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~i--~~~~~~~--~g~~y~~~~~f~~-~~~lg~~~~~~t~q~ 416 (563)
T TIGR00418 345 FDKYELSTRDPEDFIGED---ELWEKAEAALEEALKELGV--PYEIDPG--RGAFYGPKIDFAF-KDALGREWQCATVQL 416 (563)
T ss_pred eEEEEEeCCChhhhcCCH---HHHHHHHHHHHHHHHhCCC--ceEEcCC--CcceecceEEEEe-ecCCCCceeeceeee
Confidence 000 01111 1122455678888889998 4889998 9999999999995 4332210 00123
Q ss_pred ccccCccchhh-hhhcCCCCCCCCee---EEeeeHHHHHHHHHHh-h-hhhhhccCCCcceEEEEeCCchhHHHHHHHHH
Q psy13909 245 SVAGGGRYDKL-VGMFDPRQRNVPCV---GISIGVERIFSLIESK-L-AAERTKLRTTEVQVYVASAQKNLLEERMRICS 318 (328)
Q Consensus 245 sIa~GGRYD~L-v~~f~~~g~~vPav---GfsiglerL~~~l~~~-~-~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~ 318 (328)
.+++|||||.+ +...| |...|++ ||++|+|||+.++... . ..+ ....+.+|+|++.++.....++++++
T Consensus 417 ~~~~g~ryd~~~~~~~g--~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p---~~~~p~~v~vi~~~~~~~~~a~~ia~ 491 (563)
T TIGR00418 417 DFELPERFDLTYVDEDN--EEKRPVMIHRAILGSIERFIAILLEKYAGNFP---LWLAPVQVVVIPVNERHLDYAKKVAQ 491 (563)
T ss_pred ccCCHhhcCCEEECCCC--CEEeeEEEEeeccCcHHHHHHHHHHhccCCCC---CcCCCceEEEEEccchHHHHHHHHHH
Confidence 48999999995 88887 5678974 9999999999888543 1 111 22356789999999888889999999
Q ss_pred HHHHCCCccC
Q psy13909 319 YLWKNGINAD 328 (328)
Q Consensus 319 ~Lw~~GI~ae 328 (328)
.||++||+|+
T Consensus 492 ~LR~~Gi~v~ 501 (563)
T TIGR00418 492 KLKKAGIRVD 501 (563)
T ss_pred HHHHcCCEEE
Confidence 9999999874
No 20
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.68 E-value=1.7e-16 Score=165.26 Aligned_cols=240 Identities=15% Similarity=0.124 Sum_probs=149.5
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCC--------------------ChhhHHHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGV--------------------PAKQFRTIC 128 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi--------------------~~~~~~~i~ 128 (328)
..+||+||+|..+.+|+.|.+.+.+.+.++||++|.||+|.-..+|...|- .+..-..++
T Consensus 262 ~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~ 341 (639)
T PRK12444 262 EAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHM 341 (639)
T ss_pred ccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHH
Confidence 578999999999999999999999999999999999999955555544431 011111223
Q ss_pred HHhhhhCccChHH-----------HHHH-------------HH----HhcCCCHHHHHHHHHHHhccCCHHHHHHHhc--
Q psy13909 129 SSVDKLDKWSWED-----------VRYE-------------MT----QEKGLSKIIADKIGIYVQQHGHKELVEKFMQ-- 178 (328)
Q Consensus 129 ~~idkldk~~~~~-----------v~~e-------------l~----~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~-- 178 (328)
.+....- .+|.+ ++.| +. .-.+-+++....+...+.+. .+++..+--
T Consensus 342 ~~~~~~~-~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~--~~i~~~lgl~~ 418 (639)
T PRK12444 342 LMFKNKL-HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQI--DYVYKTFGFEY 418 (639)
T ss_pred HHHhCcc-cChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHH--HHHHHHcCCcE
Confidence 2221110 01111 0111 10 00122222222222222110 112221100
Q ss_pred ------cc-cccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCcc
Q psy13909 179 ------DD-LLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGR 251 (328)
Q Consensus 179 ------~~-~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGR 251 (328)
.| +......... ..-..+.+.|+..|++ +.+|++ ||+ || |.+||+...+.. +....|+|||
T Consensus 419 ~~~~~~r~~~~~G~~e~~~--~~~~~l~~~l~~~~~~--y~~~~~--~ga-~Y-~~~~e~~~~~~~----~~~~~~~t~~ 486 (639)
T PRK12444 419 EVELSTRPEDSMGDDELWE--QAEASLENVLQSLNYK--YRLNEG--DGA-FY-GPKIDFHIKDAL----NRSHQCGTIQ 486 (639)
T ss_pred EEEEECCccccCCCHHHHH--HHHHHHHHHHHHcCCC--ceeccC--Ccc-cc-cceEEEEeecCC----CChhccccee
Confidence 00 0011111111 1113567778888884 789998 998 99 999999987643 4457999999
Q ss_pred chh---------hhhhcCCCCCCCCeeE---EeeeHHHHHHHHHHh-h-hhhhhccCCCcceEEEEeCCc-hhHHHHHHH
Q psy13909 252 YDK---------LVGMFDPRQRNVPCVG---ISIGVERIFSLIESK-L-AAERTKLRTTEVQVYVASAQK-NLLEERMRI 316 (328)
Q Consensus 252 YD~---------Lv~~f~~~g~~vPavG---fsiglerL~~~l~~~-~-~~~~~~~~~~~~~VlV~s~~~-~~l~e~l~l 316 (328)
||. ++...| +...|++| |..|+|||+.+|.+. + ..+ ....+.+|+|++.++ .....++++
T Consensus 487 ~d~~~~~~f~l~~~~~~g--~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p---~~~ap~qV~Ii~~~~~~~~~~a~~l 561 (639)
T PRK12444 487 LDFQMPEKFDLNYIDEKN--EKRRPVVIHRAVLGSLDRFLAILIEHFGGAFP---AWLAPVQVKVIPVSNAVHVQYADEV 561 (639)
T ss_pred eecccccccceEEECCCC--CccccEEEEECCCCCHHHHHHHHHHhcCCCCC---CccCCceEEEEEcccHHHHHHHHHH
Confidence 999 666665 57899999 888999999888442 2 111 223578999999988 578899999
Q ss_pred HHHHHHCCCccC
Q psy13909 317 CSYLWKNGINAD 328 (328)
Q Consensus 317 ~~~Lw~~GI~ae 328 (328)
++.||++||+|+
T Consensus 562 a~~LR~~Gi~ve 573 (639)
T PRK12444 562 ADKLAQAGIRVE 573 (639)
T ss_pred HHHHHHCCCEEE
Confidence 999999999875
No 21
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.41 E-value=1.1e-12 Score=135.25 Aligned_cols=244 Identities=15% Similarity=0.144 Sum_probs=141.5
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCC---------------------ChhhHHH
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGV---------------------PAKQFRT 126 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi---------------------~~~~~~~ 126 (328)
..++|++||+|..+.+++.|.+.+.++|++|||++|.||+|....+|..+|- -+.....
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~ 272 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPG 272 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHH
Confidence 4689999999999999999999999999999999999999944444443321 0111112
Q ss_pred HHHHhhh-h-C--ccCh--------------------HHHHHHHH----HhcCCCHHHHHHHHHHHhccCCHHHHHHHhc
Q psy13909 127 ICSSVDK-L-D--KWSW--------------------EDVRYEMT----QEKGLSKIIADKIGIYVQQHGHKELVEKFMQ 178 (328)
Q Consensus 127 i~~~idk-l-d--k~~~--------------------~~v~~el~----~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~ 178 (328)
++.+..+ . + ..|. -.+ +++. +-.+-++...+.+.+.+.+- .+.+..+--
T Consensus 273 ~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~-reF~q~~~~if~~~~~~~~e~~e~i~l~--~~~~~~lgl 349 (575)
T PRK12305 273 HILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRV-RGFTQDDAHIFCTPDQIEDEILKVLDFV--LELLKDFGF 349 (575)
T ss_pred HHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccc-cCeEEcceEEEeCHHHHHHHHHHHHHHH--HHHHHHcCC
Confidence 2222211 0 0 0110 000 1111 01233334444333333321 112222100
Q ss_pred c-----------ccccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcC-CccCCcccccc
Q psy13909 179 D-----------DLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIG-DRKKGESVGSV 246 (328)
Q Consensus 179 ~-----------~~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~-~~~~~~~~~sI 246 (328)
. ..+..+...- -.....+.+.|+..|++ +..++. +.+||+ ..|++...+ .+.. ...+++
T Consensus 350 ~~~~i~l~~r~~~~~~g~~~~~--~~~~~~l~~~l~~~g~~--~~~~~~---~~~~y~-~~~~~~~~d~~g~~-~~~~t~ 420 (575)
T PRK12305 350 KDYYLELSTREPEKYVGDDEVW--EKATEALREALEELGLE--YVEDPG---GAAFYG-PKIDVQIKDALGRE-WQMSTI 420 (575)
T ss_pred CeEEEEEeCCChhhccCCHHHH--HHHHHHHHHHHHhcCCC--cEecCC---Cccccc-ccEEEEeeccCCCc-eeccce
Confidence 0 0000111110 11123456667777874 556666 778996 557875442 2210 011333
Q ss_pred ----ccCccchh-hhhhcCCCCCCCCee---EEeeeHHHHHHHHHHh--hhhhhhccCCCcceEEEEeCCchhHHHHHHH
Q psy13909 247 ----AGGGRYDK-LVGMFDPRQRNVPCV---GISIGVERIFSLIESK--LAAERTKLRTTEVQVYVASAQKNLLEERMRI 316 (328)
Q Consensus 247 ----a~GGRYD~-Lv~~f~~~g~~vPav---GfsiglerL~~~l~~~--~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l 316 (328)
..|+|||- +++..| +...|++ |+.-++||++.+|... ...+ .+ ..+.+|+|++.+++....++++
T Consensus 421 ~~~~~~~~~fdl~y~~~~~--~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p--~~-~~p~~v~Ii~~~~~~~~~a~~i 495 (575)
T PRK12305 421 QLDFNLPERFDLEYTAEDG--KRQRPVMIHRALFGSIERFIGILTEHYAGAFP--FW-LAPVQVVIIPVADAHNEYAEEV 495 (575)
T ss_pred eeecccHhhCCCEEECCCC--CccCceEEEccccccHHHHHHHHHHHhCCCCC--CC-CCCccEEEEEeChHHHHHHHHH
Confidence 36699994 677554 3568988 7777999999999653 2111 12 3467999999998888899999
Q ss_pred HHHHHHCCCccC
Q psy13909 317 CSYLWKNGINAD 328 (328)
Q Consensus 317 ~~~Lw~~GI~ae 328 (328)
++.||++||+|+
T Consensus 496 ~~~Lr~~gi~v~ 507 (575)
T PRK12305 496 AKKLRAAGIRVE 507 (575)
T ss_pred HHHHHHCCCEEE
Confidence 999999999875
No 22
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.30 E-value=2.7e-11 Score=126.33 Aligned_cols=122 Identities=18% Similarity=0.128 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcC-CccCC---ccccccccCccch-hhhhhcCCCCCCCCee-
Q psy13909 196 KLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIG-DRKKG---ESVGSVAGGGRYD-KLVGMFDPRQRNVPCV- 269 (328)
Q Consensus 196 ~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~-~~~~~---~~~~sIa~GGRYD-~Lv~~f~~~g~~vPav- 269 (328)
+.+.+.|+..|++ ...+ .+..+|.|..|+....+ .+... ...-.+..++||| ..++.-+ +...|++
T Consensus 439 ~~l~~~l~~~g~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~dl~Yt~~~~--~~~~p~~i 510 (638)
T PRK00413 439 AALKEALDELGLD--YEIA----PGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLPERFDLTYVGEDG--EKHRPVMI 510 (638)
T ss_pred HHHHHHHHHcCCC--ceec----CCccccccceEEEEeecCCCCeEEeccEeecccChhhcCCEEECCCC--CccCcEEE
Confidence 3455556655553 2222 34556778888765433 11000 0011244568898 4677654 3567988
Q ss_pred --EEeeeHHHHHHHHHHh--hhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 270 --GISIGVERIFSLIESK--LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 270 --GfsiglerL~~~l~~~--~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
||..++||++.+|.+. +..+ .+ ..+.+|+|++.+.+....++++++.||++||+|+
T Consensus 511 ~~~~~g~~eRli~~l~e~~~~~~p--~~-~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~ 570 (638)
T PRK00413 511 HRAILGSMERFIGILIEHYAGAFP--TW-LAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVE 570 (638)
T ss_pred EecceehHHHHHHHHHHHcCCCCC--cc-cCcceEEEEEeChhHHHHHHHHHHHHHhCCCEEE
Confidence 8888999999998543 2221 12 2467999999988778899999999999999875
No 23
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.25 E-value=2.6e-11 Score=121.73 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCC-ceEEEccCCccCCccccceEEEEEEcCCccCCc---cccccccCccchhhhh--hcCCCCCC-
Q psy13909 193 AAIKLLLSYCDIYELT-DKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGE---SVGSVAGGGRYDKLVG--MFDPRQRN- 265 (328)
Q Consensus 193 ~~L~~l~~~L~~~gi~-~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~---~~~sIa~GGRYD~Lv~--~f~~~g~~- 265 (328)
.-++.+..++..+|++ .++.|++...++++|||+.+|++...... |. ..+++++||||| |.. .|+ +.+
T Consensus 232 ~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~--g~~~~e~~g~~~~~dyd-L~~~~~~s--~~dl 306 (456)
T PRK04173 232 YWIELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDIEYKFPF--GRFWGELEGIANRTDYD-LSRHSKHS--GEDL 306 (456)
T ss_pred HHHHHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhHHHhCCC--CCcEEEEeeeeccchhh-cccchhhc--CCCe
Confidence 3445667778889997 57999999999999999999988654321 10 114689999999 764 333 122
Q ss_pred ------------CC-eeEEeeeHHHHHHHH-HHhhhhh-----------hhccCCCcceEEEEeCCc--hhHHHHHHHHH
Q psy13909 266 ------------VP-CVGISIGVERIFSLI-ESKLAAE-----------RTKLRTTEVQVYVASAQK--NLLEERMRICS 318 (328)
Q Consensus 266 ------------vP-avGfsiglerL~~~l-~~~~~~~-----------~~~~~~~~~~VlV~s~~~--~~l~e~l~l~~ 318 (328)
.| .+++|+|+|||+.++ .+.-... .-.....+.+|+|++.++ .....++++++
T Consensus 307 ~y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~la~ 386 (456)
T PRK04173 307 SYFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREIYA 386 (456)
T ss_pred EEEecCCCCceeeeEEEEecccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHHHH
Confidence 34 569999999965544 4331000 001234678999999876 36788999999
Q ss_pred HHHHCCCccC
Q psy13909 319 YLWKNGINAD 328 (328)
Q Consensus 319 ~Lw~~GI~ae 328 (328)
.||++ |+|+
T Consensus 387 ~LR~~-irVe 395 (456)
T PRK04173 387 ELRKD-FNVD 395 (456)
T ss_pred HHHhc-CEEE
Confidence 99999 8874
No 24
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.03 E-value=5.2e-10 Score=114.35 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=41.5
Q ss_pred ccce--eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 64 KLTL--KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 64 ~~~~--~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-|.+ ..++|+++|+|..+.+|+.|++.+++.++++||++|.||++
T Consensus 149 lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i 195 (545)
T PRK14799 149 LFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHV 195 (545)
T ss_pred CcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCcc
Confidence 4444 46899999999999999999999999999999999999998
No 25
>PLN02908 threonyl-tRNA synthetase
Probab=98.86 E-value=1.6e-09 Score=113.98 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=39.4
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
..++|+++|+|..+.+++.|++.+++.+.++||++|.||.+
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l 348 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNI 348 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCcc
Confidence 45689999999999999999999999999999999999999
No 26
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=98.80 E-value=9.3e-09 Score=69.54 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q psy13909 5 RIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLC 46 (328)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (328)
.+...|+.||+.||+|| ++++++++|+++|++||+||+|||
T Consensus 2 ~l~~~I~~QGe~VRkLK-a~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 2 KLEEAVKLQGELVRKLK-AEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred cHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHhC
Confidence 46889999999999999 999999999999999999999998
No 27
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=98.59 E-value=7.1e-08 Score=65.35 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=38.9
Q ss_pred HHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcccc
Q psy13909 7 INEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTT 49 (328)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (328)
.+.|..||+.||.|| +++++++.|+.+|++||+||+++..++
T Consensus 2 ~~~I~~QGekVR~LK-a~ka~k~~i~~eV~~LL~LK~~~k~~t 43 (45)
T cd00939 2 EKEVAEQGNKVRKLK-ASKADKSVWQPEVNKLLDLKKQLALAE 43 (45)
T ss_pred hHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999 999999999999999999999998543
No 28
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=98.44 E-value=5e-07 Score=64.67 Aligned_cols=46 Identities=33% Similarity=0.371 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q psy13909 6 IINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTT 52 (328)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (328)
|.++|+.||+.||+|| +++++++.|+.+|++|++||+++..+++..
T Consensus 1 L~~~I~~QG~~VR~LK-a~ka~k~~i~~aV~~Ll~LK~~~~~~tg~~ 46 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLK-AEKADKEEIDAAVAKLLELKAELKELTGKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHH-HTT--HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred ChHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5789999999999999 999999999999999999999998655443
No 29
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=98.31 E-value=3.1e-06 Score=85.64 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=45.3
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHc
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESC 117 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~ 117 (328)
..++|+++|+|..+.+++.|.+.+.+.|+++||++|.||+|+-..+++..
T Consensus 25 ~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~ 74 (472)
T TIGR00408 25 YPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKE 74 (472)
T ss_pred cCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhh
Confidence 45899999999999999999999999999999999999999666666654
No 30
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=98.28 E-value=2.1e-05 Score=78.88 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=46.2
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
-..++|+.+|+|..+.++++|.+.+.+.+.++||++|.||++.-..+++..|
T Consensus 33 ~~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg 84 (439)
T PRK12325 33 RQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESG 84 (439)
T ss_pred cccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcC
Confidence 3468999999999999999999999999999999999999996666666544
No 31
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.93 E-value=8.9e-05 Score=75.21 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=42.9
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFE 115 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~ 115 (328)
.++|+.+|+|..+.+++.|.+.+.+.|+++||++|.||+++-..++.
T Consensus 32 ~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~ 78 (477)
T PRK08661 32 PVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLE 78 (477)
T ss_pred CCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHh
Confidence 47899999999999999999999999999999999999996666654
No 32
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.46 E-value=8.6e-05 Score=69.20 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=47.8
Q ss_pred cceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 65 ~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
|....|+|+.||+|..+.++++|.+.+.+.|+++||++|.||+|.-..+|...|
T Consensus 15 ~~~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg 68 (255)
T cd00779 15 FIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESG 68 (255)
T ss_pred CcccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcC
Confidence 445679999999999999999999999999999999999999996666666554
No 33
>cd00936 WEPRS_RNA WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=97.19 E-value=0.00063 Score=47.55 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=38.0
Q ss_pred HHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccC
Q psy13909 7 INEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTN 50 (328)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (328)
...|..|++.+|.|| ..++.+..++.+|++|+++|+++..+++
T Consensus 2 ~~~i~~qge~VR~LK-~~~a~k~~~~~av~~Ll~lK~~~k~~tg 44 (50)
T cd00936 2 YKKIAAQGDLVRELK-AKKAPKEEIDAAVKKLLALKADYKEATG 44 (50)
T ss_pred hHHHHhchHHHhhhc-cccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999 8888889999999999999999985443
No 34
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.16 E-value=0.00029 Score=65.61 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=42.9
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcC--CcccchHHHHHHHHHHH
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHG--AQTIDTPVCLLDGLFES 116 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G--~~~IdtPvfil~~il~~ 116 (328)
..|+|+.||+|..+.++++|.+.+.+.|.++| |++|+||++.-..||..
T Consensus 19 ~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~ 69 (254)
T cd00774 19 GGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKT 69 (254)
T ss_pred cChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHhee
Confidence 34899999999999999999999999999996 99999999944455543
No 35
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.13 E-value=0.00033 Score=65.73 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=46.4
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
.|+|+.||+|..+.++++|.+.+.+.++++||++|.||+++-..++..+|
T Consensus 20 ~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g 69 (264)
T cd00772 20 PGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEA 69 (264)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcC
Confidence 48999999999999999999999999999999999999997777777666
No 36
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=97.10 E-value=0.001 Score=44.51 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q psy13909 8 NEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLC 46 (328)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (328)
..|..||+.||.|| ..++....|+++|.+|+++|+++.
T Consensus 2 ~~i~~qg~~vR~lK-~~~a~k~~~~~~v~~L~~lK~~~~ 39 (42)
T cd01200 2 EKIAEQGDLVRKLK-AEKAPKEEIDAAVKKLLALKAQYK 39 (42)
T ss_pred cHHHHhHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999 888889999999999999999986
No 37
>PLN02837 threonine-tRNA ligase
Probab=97.02 E-value=0.023 Score=59.49 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=45.3
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
...|+--|+|.-+.+++.|.+.+++...++||++|.||.++-..++..+|
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG 284 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSG 284 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcC
Confidence 35689999999999999999999999999999999999997777777777
No 38
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=96.96 E-value=0.00062 Score=70.53 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=46.4
Q ss_pred cceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHc
Q psy13909 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESC 117 (328)
Q Consensus 65 ~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~ 117 (328)
|..+.|+|++||+|..+.++++|++.+.+.|+++||++|.||++.-..+|...
T Consensus 31 ~i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~s 83 (565)
T PRK09194 31 YIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQES 83 (565)
T ss_pred CccccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhc
Confidence 55668999999999999999999999999999999999999999555555443
No 39
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=96.96 E-value=0.0037 Score=56.67 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
+.++++|.+.+.+.|+++||++|+||++.-..+++..|
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~ 39 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGG 39 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcC
Confidence 46889999999999999999999999996666666555
No 40
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=96.92 E-value=0.00061 Score=64.93 Aligned_cols=50 Identities=20% Similarity=0.419 Sum_probs=45.6
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
.++|++||+|..+.+++.|.+.+.+.|+++||++|.||+++-..++..+|
T Consensus 18 ~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg 67 (298)
T cd00771 18 AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSG 67 (298)
T ss_pred CCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCC
Confidence 68999999999999999999999999999999999999996666666555
No 41
>PLN02734 glycyl-tRNA synthetase
Probab=96.67 E-value=0.028 Score=59.15 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=75.8
Q ss_pred HHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCcc------ccccccc-----------cccccc
Q psy13909 4 LRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTV------EEHDVEY-----------DQVKLT 66 (328)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-----------~~~~~~ 66 (328)
..+++.++.|++.+|.|| ..++.+..+++.+++|..+|.++...+.... ..+.+.. +..-|.
T Consensus 10 ~~~~~~~~~~~~~~r~l~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~krRgF~ 88 (684)
T PLN02734 10 AEKQAAVTAQGNAVRALK-ASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDGAASKEAFRQAVVNTLERRLFY 88 (684)
T ss_pred HHHHHHHHHhHHHHhhhh-hccCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccchhHHHHHHHHHHHhcCCc
Confidence 356889999999999999 8888899999999999999888753321110 0111000 011222
Q ss_pred e------eCCCCCccCCchhHHHHHHHHHHHHHHHH-hcCCcccchHHH
Q psy13909 67 L------KTPKGTRDYGPEPMVLRKNVLEQIISVFK-RHGAQTIDTPVC 108 (328)
Q Consensus 67 ~------~~pkGtrD~~p~~~~~r~~v~~~i~~~f~-~~G~~~IdtPvf 108 (328)
+ -=..|+-||+|.-.++++.|.+..++.|= ..+.-+||+|++
T Consensus 89 ~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i 137 (684)
T PLN02734 89 IPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCV 137 (684)
T ss_pred cccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeecccc
Confidence 2 23469999999999999999999999984 445568999988
No 42
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=96.58 E-value=0.019 Score=60.04 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=36.6
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 70 pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
..|.-=|+|.-+.+++.|.+.+.+.+.++||++|.||.+
T Consensus 216 ~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~ 254 (613)
T PRK03991 216 DVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIM 254 (613)
T ss_pred CeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCee
Confidence 468888999999999999999999999999999999987
No 43
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=96.29 E-value=0.0036 Score=64.93 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=46.2
Q ss_pred cceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHc
Q psy13909 65 LTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESC 117 (328)
Q Consensus 65 ~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~ 117 (328)
|.-+.|+|+.||+|..+.++++|++.+.+.|.++||++|.||+|.-..++...
T Consensus 31 ~i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~s 83 (568)
T TIGR00409 31 FIRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQES 83 (568)
T ss_pred CccccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhc
Confidence 33457999999999999999999999999999999999999999555555544
No 44
>PLN02850 aspartate-tRNA ligase
Probab=96.12 E-value=0.046 Score=56.28 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|..|...+++.|..+||.+|+||++
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L 252 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKL 252 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCcc
Confidence 4568899999999999999999999998
No 45
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=95.99 E-value=0.005 Score=57.56 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLF 114 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il 114 (328)
.|+|+.+|+|..+.++++|.+.+.+.++++||++|.||+++-..++
T Consensus 20 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~ 65 (261)
T cd00778 20 PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESEL 65 (261)
T ss_pred CCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHh
Confidence 5789999999999999999999999999999999999999665555
No 46
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=94.96 E-value=1.6 Score=44.23 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHH-HHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccch-hhhhhcCCCCCCCCe
Q psy13909 191 GLAAIKLLLSYC-DIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYD-KLVGMFDPRQRNVPC 268 (328)
Q Consensus 191 ~l~~L~~l~~~L-~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD-~Lv~~f~~~g~~vPa 268 (328)
.+.+|+.+++.+ ..+|. .++.|-|+--|.--|+-++-.|++....... +--.|++.|=|. +.+..|| -+.|+
T Consensus 244 Sf~DLKgvLe~LLr~LG~-~~vRFRPsekrskyYFPFTEaEVdV~~~k~~--gWiEIgG~GmVhPeVL~~~G---Id~PV 317 (533)
T TIGR00470 244 SVDDGKAVAEGLLAQFGF-TKFRFRPDEKKSKYYIPETQTEVYAYHPKLG--EWIEVATFGVYSPIALAKYN---IDVPV 317 (533)
T ss_pred CHHHHHHHHHHHHHHhCC-ceEEeccCcCCCCCcCCCceEEEEEEccCCC--ceEEEEeccccCHHHHHHcC---CCCce
Confidence 456777665554 55687 5799999988777788888888887542100 113688888888 6667775 77899
Q ss_pred eEEeeeHHHHHHHHH
Q psy13909 269 VGISIGVERIFSLIE 283 (328)
Q Consensus 269 vGfsiglerL~~~l~ 283 (328)
+.|.||+|||..+.-
T Consensus 318 ~AFGIGVERlAMi~y 332 (533)
T TIGR00470 318 MNLGLGVERLAMILY 332 (533)
T ss_pred EEEEecHHHHHHHHh
Confidence 999999999987643
No 47
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=94.91 E-value=0.34 Score=50.18 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|..|...+++.|...||.+|+||++
T Consensus 213 ~r~rs~i~~~~R~fl~~~gFiEV~TP~L 240 (550)
T PTZ00401 213 FRLQSRVCQYFRQFLIDSDFCEIHSPKI 240 (550)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 4668899999999999999999999997
No 48
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=94.81 E-value=0.043 Score=56.95 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=43.8
Q ss_pred eEEeeeHHHHHHHHHHh-----hhhhhhccCCCcceEEEEeCC---chhHHHHHHHHHHHHHCCCccC
Q psy13909 269 VGISIGVERIFSLIESK-----LAAERTKLRTTEVQVYVASAQ---KNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 269 vGfsiglerL~~~l~~~-----~~~~~~~~~~~~~~VlV~s~~---~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
.-|+||++||+.++.+. +... .....+.+|+|++.+ +.....+.++++.||++||+++
T Consensus 437 ~~~gIGv~Rli~al~e~~~d~~gl~~--P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~ 502 (565)
T PRK09194 437 GCYGIGVSRLVAAAIEQNHDEKGIIW--PKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVL 502 (565)
T ss_pred eeEechHHHHHHHHHHhhccccCccC--CCccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEE
Confidence 45888999999888754 2111 123467899999987 4567789999999999999873
No 49
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.49 E-value=0.23 Score=51.77 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=42.9
Q ss_pred cccccee--CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 62 QVKLTLK--TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 62 ~~~~~~~--~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
...|.+. ...|+.=|+|+-+.+|+.+++.+......+||++|.||++
T Consensus 199 l~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~ 247 (589)
T COG0441 199 LDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVL 247 (589)
T ss_pred hcceeeccccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCee
Confidence 4466666 6889999999999999999999999999999999999998
No 50
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=94.01 E-value=0.065 Score=40.28 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.5
Q ss_pred ceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 298 VQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 298 ~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
++|+|++.++....+++++++.||++|++++
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~ 32 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAE 32 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEE
Confidence 4799999888778899999999999999874
No 51
>cd00935 GlyRS_RNA GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=93.99 E-value=0.17 Score=35.28 Aligned_cols=41 Identities=34% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q psy13909 5 RIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLC 46 (328)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (328)
.+...|..||+.+|.|| ...+....++..+..|.++|..+.
T Consensus 3 ~l~~~v~~qg~~vR~lk-~~~a~~~~~~~a~~~L~~~k~~l~ 43 (51)
T cd00935 3 PLRAAVKEQGDLVRKLK-EEGAPDVDIKKAVAELKARKKLLE 43 (51)
T ss_pred HHHHHHHHhhHHHHhhc-cccCcHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999 777778899999999999998885
No 52
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=93.94 E-value=0.068 Score=40.76 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=28.0
Q ss_pred cceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 297 EVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 297 ~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
+.+|+|++.++....+++++++.||++|++++
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~ 32 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVE 32 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEE
Confidence 35788988888888899999999999999874
No 53
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=93.44 E-value=0.12 Score=53.36 Aligned_cols=45 Identities=31% Similarity=0.513 Sum_probs=39.9
Q ss_pred ccceeC------CCCCccCCchhHHHHHHHHHHHHHHH-HhcCCcccchHHH
Q psy13909 64 KLTLKT------PKGTRDYGPEPMVLRKNVLEQIISVF-KRHGAQTIDTPVC 108 (328)
Q Consensus 64 ~~~~~~------pkGtrD~~p~~~~~r~~v~~~i~~~f-~~~G~~~IdtPvf 108 (328)
-|.++. ..|+-||+|--..+.+.|.+.+++.| ...|+.+|++|++
T Consensus 14 gf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i 65 (551)
T TIGR00389 14 GFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPII 65 (551)
T ss_pred CCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeecccc
Confidence 455555 78999999999999999999999999 5778999999998
No 54
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=93.26 E-value=0.01 Score=58.58 Aligned_cols=67 Identities=34% Similarity=0.596 Sum_probs=54.7
Q ss_pred cCCC-ceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHHH
Q psy13909 205 YELT-DKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSL 281 (328)
Q Consensus 205 ~gi~-~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~ 281 (328)
.+++ .....|..+.+-+|||||-+||+.... ..++|||||.|...++.. ..+|++||++.++|+...
T Consensus 317 ~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~---------r~~g~~~~~~l~~g~~~~-~~~~~~~~~~~~~~~~~~ 384 (390)
T COG3705 317 GGLPLEERRYAALFGRELDYYTGAAFEAAQAL---------RLAGGGRYDRLLTGLGAS-EEIPGVGFSLWLDRGVAV 384 (390)
T ss_pred cCCCcccchhhhccCccchhhHHHHHHHHHHh---------cccCCeEEEecccccchH-hhhcccceeEeeccccee
Confidence 4554 467788899999999999999987653 378999999999988743 568999999999998543
No 55
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.16 Score=50.90 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|..|...+++.|...||..|.||.+
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i 161 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPII 161 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceE
Confidence 36678999999999999999999999998
No 56
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=92.50 E-value=0.075 Score=54.23 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=38.0
Q ss_pred ccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 64 ~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.|.+..| | +|++|.++..+.+|++.++++|.++||++|+||++
T Consensus 217 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~v 259 (489)
T PRK04172 217 PYNVKAP-P-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLV 259 (489)
T ss_pred cceeCCC-C-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCee
Confidence 3445444 3 99999999999999999999999999999999998
No 57
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=91.25 E-value=0.29 Score=37.40 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=27.0
Q ss_pred ceEEEEeCCc---hhHHHHHHHHHHHHHCCCccC
Q psy13909 298 VQVYVASAQK---NLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 298 ~~VlV~s~~~---~~l~e~l~l~~~Lw~~GI~ae 328 (328)
.+|+|++.++ .....++++++.||++|++++
T Consensus 2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~ 35 (94)
T cd00738 2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVL 35 (94)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 5789988887 778899999999999999874
No 58
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=91.04 E-value=0.27 Score=40.25 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=29.0
Q ss_pred CcceEEEEeCC--chhHHHHHHHHHHHHHCCCccC
Q psy13909 296 TEVQVYVASAQ--KNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 296 ~~~~VlV~s~~--~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
.+.+|+|++.+ +.....++++++.||++|++|+
T Consensus 25 ap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~ 59 (121)
T cd00858 25 APIKVAVLPLVKRDELVEIAKEISEELRELGFSVK 59 (121)
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 46799999988 7777899999999999999874
No 59
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=88.73 E-value=0.59 Score=35.88 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=25.7
Q ss_pred ceEEEEeCCc---hhHHHHHHHHHHHHHCCCccC
Q psy13909 298 VQVYVASAQK---NLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 298 ~~VlV~s~~~---~~l~e~l~l~~~Lw~~GI~ae 328 (328)
.+|.|++... .....++++++.||++|++++
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~ 35 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVL 35 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 4788888765 567789999999999999874
No 60
>PRK06462 asparagine synthetase A; Reviewed
Probab=87.23 E-value=0.59 Score=45.41 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.-+.+|..|.+.+++.|..+||.+|+||++
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l 57 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPII 57 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 456789999999999999999999999987
No 61
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=85.29 E-value=1.7 Score=42.99 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=51.0
Q ss_pred ccccCccchhhhhhcCCCCCC-----CCeeEEeeeHHHHHHHHHHhhhh---hhhccCCCcceEEEEeCCchhHHHHHHH
Q psy13909 245 SVAGGGRYDKLVGMFDPRQRN-----VPCVGISIGVERIFSLIESKLAA---ERTKLRTTEVQVYVASAQKNLLEERMRI 316 (328)
Q Consensus 245 sIa~GGRYD~Lv~~f~~~g~~-----vPavGfsiglerL~~~l~~~~~~---~~~~~~~~~~~VlV~s~~~~~l~e~l~l 316 (328)
.|-+|-|==..+..|.-.... .-.-=.-+.+||++..+-..... ..-...-.+.+|+|++.+++....++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkL 293 (387)
T PRK14938 214 AVYGGVKELDFPKEFIDSKNRIKIWWVNESRTYVDVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQV 293 (387)
T ss_pred EEecCCCCCCchHHhhcccccEEEEecCCCEEEEEecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHH
Confidence 344444444457888521111 11222457789987654321111 0001234578999999988877899999
Q ss_pred HHHHHHCCCccC
Q psy13909 317 CSYLWKNGINAD 328 (328)
Q Consensus 317 ~~~Lw~~GI~ae 328 (328)
++.||++||+++
T Consensus 294 A~eLR~aGIrVe 305 (387)
T PRK14938 294 AERLRKEGIRVN 305 (387)
T ss_pred HHHHHHCCCEEE
Confidence 999999999874
No 62
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=84.53 E-value=0.97 Score=43.05 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=43.9
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCC
Q psy13909 72 GTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGV 119 (328)
Q Consensus 72 GtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi 119 (328)
|+--|.|.-+.+++.|.+.+.+.+.++||++|.||.++-..+++.+|-
T Consensus 43 g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~ 90 (297)
T cd00770 43 RFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQ 90 (297)
T ss_pred ceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCc
Confidence 466689999999999999999999999999999999988888888884
No 63
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=83.18 E-value=2.2 Score=35.48 Aligned_cols=37 Identities=32% Similarity=0.314 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHcCCCceEEEcc-------CCccCCccccceEE
Q psy13909 191 GLAAIKLLLSYCDIYELTDKVIFDL-------SLARGLDYYTGIIY 229 (328)
Q Consensus 191 ~l~~L~~l~~~L~~~gi~~~i~fDl-------sl~RgldYYTGiIF 229 (328)
.+.+|+.+-+++...|| +|.+|- +.+.|+|||||.|+
T Consensus 20 s~~d~k~~kk~m~~~gI--kV~Idkk~kilP~n~aagFd~~tg~I~ 63 (132)
T PF15640_consen 20 SVKDIKNFKKEMGKRGI--KVKIDKKDKILPENKAAGFDPETGEIY 63 (132)
T ss_pred eHHHHHHHHHHHHhCCc--EEEECCccCCCCccccccCCCCCCcEE
Confidence 45789999999999999 566664 45789999999773
No 64
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=81.99 E-value=0.52 Score=40.85 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHH-hcCCcccchHHHHHHHHHHHcCC
Q psy13909 83 LRKNVLEQIISVFK-RHGAQTIDTPVCLLDGLFESCGV 119 (328)
Q Consensus 83 ~r~~v~~~i~~~f~-~~G~~~IdtPvfil~~il~~~Gi 119 (328)
+++.|.+.+.+.+. ++||++|+||+++-..+++.+|-
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~ 38 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGH 38 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSH
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccc
Confidence 57899999999999 99999999999976666666653
No 65
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=80.70 E-value=13 Score=35.53 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+..-.|..|++.|+..|..+||-+++||++
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~L 43 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPAL 43 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHh
Confidence 356779999999999999999999999998
No 66
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=80.46 E-value=0.97 Score=43.27 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 82 VLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 82 ~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.+|.+|++.+++.|.++||.+|+||++
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l 28 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLL 28 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeE
Confidence 578999999999999999999999998
No 67
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=80.46 E-value=1.2 Score=43.05 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=28.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 77 GPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 77 ~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.-.-+.+|.+|.+.+++.|.++||.+|+||++
T Consensus 20 ~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l 51 (322)
T cd00776 20 VQAIFRIRSEVLRAFREFLRENGFTEVHTPKI 51 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeeCCce
Confidence 34457889999999999999999999999998
No 68
>PLN02532 asparagine-tRNA synthetase
Probab=80.40 E-value=1.6 Score=46.02 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|..|...+++.|..+||.+|.||++
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiL 262 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPII 262 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCee
Confidence 36778999999999999999999999998
No 69
>PLN02734 glycyl-tRNA synthetase
Probab=78.37 E-value=2.7 Score=44.60 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=39.7
Q ss_pred CC-eeEEeeeHHHHHHHHHHhhhhh---hh-------ccCCCcceEEEEeCC--chhHHHHHHHHHHHHHCCCccC
Q psy13909 266 VP-CVGISIGVERIFSLIESKLAAE---RT-------KLRTTEVQVYVASAQ--KNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 266 vP-avGfsiglerL~~~l~~~~~~~---~~-------~~~~~~~~VlV~s~~--~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
+| .|==|+|++||+.++-...-.. ++ ...-.+.+|.|++.. +.....+.++++.||++||+++
T Consensus 528 iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVe 603 (684)
T PLN02734 528 TPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHK 603 (684)
T ss_pred cCceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEE
Confidence 45 5566788999986654332100 00 012245566665543 3467789999999999999864
No 70
>PLN02320 seryl-tRNA synthetase
Probab=77.07 E-value=23 Score=36.49 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=43.3
Q ss_pred CCCcc-CCchhHHHH-HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCC
Q psy13909 71 KGTRD-YGPEPMVLR-KNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGV 119 (328)
Q Consensus 71 kGtrD-~~p~~~~~r-~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi 119 (328)
.|.+- |+|.+.+.. +.+++-+++...++||++|.||.++-..+++.||-
T Consensus 221 sG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~ 271 (502)
T PLN02320 221 SGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGF 271 (502)
T ss_pred CCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCC
Confidence 48888 588888854 79999999999999999999999999999999994
No 71
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=76.72 E-value=2.5 Score=44.16 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-|.+|..|...+++.|..+||..|.||++
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPii 242 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLI 242 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCee
Confidence 46789999999999999999999999998
No 72
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=76.53 E-value=8.8 Score=37.43 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=41.5
Q ss_pred cccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHcCCChh
Q psy13909 63 VKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLL-DGLFESCGVPAK 122 (328)
Q Consensus 63 ~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil-~~il~~~Gi~~~ 122 (328)
.++-+..|. +-+.+...--...+.+.|++.|...||+++++|.+.- .--|+.+++|.+
T Consensus 91 e~~d~t~p~--~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~d 149 (339)
T PRK00488 91 ETIDVTLPG--RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKD 149 (339)
T ss_pred ccccccCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCC
Confidence 345565553 4444555556788999999999999999999998732 223678888864
No 73
>PRK09350 poxB regulator PoxA; Provisional
Probab=76.23 E-value=1.7 Score=41.65 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+..|..|.+.+++.|.++||.+|+||++
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l 32 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPIL 32 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeE
Confidence 46789999999999999999999999998
No 74
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=75.57 E-value=14 Score=34.39 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhcCCcccchHHH-HHHHHHHHcCCChhhH-HHHHHH--hh-hhCc-cChHHHHHHHHHhcCCCHHH
Q psy13909 83 LRKNVLEQIISVFKRHGAQTIDTPVC-LLDGLFESCGVPAKQF-RTICSS--VD-KLDK-WSWEDVRYEMTQEKGLSKII 156 (328)
Q Consensus 83 ~r~~v~~~i~~~f~~~G~~~IdtPvf-il~~il~~~Gi~~~~~-~~i~~~--id-kldk-~~~~~v~~el~~~~gL~~~~ 156 (328)
-...+.+.|++.|...||+++++|.+ --...|+.+++|++.- |....+ +. .... .. ..++. -.+++..
T Consensus 18 p~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~-----~~vLR-Thts~~~ 91 (247)
T PF01409_consen 18 PITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEED-----YSVLR-THTSPGQ 91 (247)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECS-----SEEE--SSTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccch-----hhhhh-hhhhHHH
Confidence 45678899999999999999999987 4566788899987542 111110 10 0000 00 00111 1233444
Q ss_pred HHHH---HHHHh-cc--CC---HHHHHH-----HhccccccchhhhHHhHHHHHHHHHHH-HHc-CCCceEEEccCCccC
Q psy13909 157 ADKI---GIYVQ-QH--GH---KELVEK-----FMQDDLLKTSKSALVGLAAIKLLLSYC-DIY-ELTDKVIFDLSLARG 220 (328)
Q Consensus 157 ~d~L---~~~~~-l~--g~---~~~l~~-----l~~~~~l~~~~~~~e~l~~L~~l~~~L-~~~-gi~~~i~fDlsl~Rg 220 (328)
++.| ...+. +. |. .+.++. ..+..-+...+. -.+.+|+.+++.+ +.+ |...++.|.++.-
T Consensus 92 ~~~l~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~--~~f~~Lk~~l~~l~~~lfG~~~~~r~~ps~f-- 167 (247)
T PF01409_consen 92 LRTLNKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKN--VTFEDLKGTLEELLKELFGIDVKVRFRPSYF-- 167 (247)
T ss_dssp HHHHTTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETT--E-HHHHHHHHHHHHHHHHTTTEEEEEEECEE--
T ss_pred HHHHHHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecc--cchhHHHHHHHHHHHHHhhcccceEeecCCC--
Confidence 4444 00010 00 10 000000 000000111111 1234555444433 344 8766788887653
Q ss_pred Ccccc--ceEEEEEEcCCccCCccccccccCccch-hhhhhcCCCCCCCCeeEEeeeHHHHHHHHH
Q psy13909 221 LDYYT--GIIYEAVLIGDRKKGESVGSVAGGGRYD-KLVGMFDPRQRNVPCVGISIGVERIFSLIE 283 (328)
Q Consensus 221 ldYYT--GiIFE~~~~~~~~~~~~~~sIa~GGRYD-~Lv~~f~~~g~~vPavGfsiglerL~~~l~ 283 (328)
-|| |.-..++..... +..---|++.|-.. ..+..+|-. ...|++.|.+|+|||..+.-
T Consensus 168 --PftePs~e~~i~~~~~~--~~~wiEvgg~G~vhP~Vl~~~gid-~~~~~~A~G~GleRlam~~~ 228 (247)
T PF01409_consen 168 --PFTEPSREADIYCGVCK--GGGWIEVGGCGMVHPEVLENWGID-EEYPGFAFGLGLERLAMLKY 228 (247)
T ss_dssp --TTEEEEEEEEEEEECTT--TTCEEEEEEEEEE-HHHHHHTT---TTSEEEEEEEEHHHHHHHHH
T ss_pred --CcccCCeEEEEEEeecc--CCCceEEeecccccHhhhhccCcC-ccceEEEecCCHHHHHHHHc
Confidence 244 444555551100 00112478888886 667778632 48999999999999976643
No 75
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=75.25 E-value=7.5 Score=37.01 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=40.8
Q ss_pred cccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHcCCCh
Q psy13909 63 VKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLD-GLFESCGVPA 121 (328)
Q Consensus 63 ~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~-~il~~~Gi~~ 121 (328)
.++.+..|.+. ..+....-...+.+.+++.|..+||.++.||.|.-+ .-++.+++|.
T Consensus 55 ~~~d~tlp~~~--~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~ 112 (294)
T TIGR00468 55 ETYDVTLPGTK--IYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQ 112 (294)
T ss_pred ccCcccCCCCC--CCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCC
Confidence 34556666532 233355556788889999999999999999998554 4567777775
No 76
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.40 E-value=4.7 Score=40.41 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=43.5
Q ss_pred CccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCC
Q psy13909 73 TRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVP 120 (328)
Q Consensus 73 trD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~ 120 (328)
+--|.|.-+.+++.+.+.+.+.+.++||++|.||.++-..+++.||-.
T Consensus 165 ~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~ 212 (418)
T TIGR00414 165 FYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQL 212 (418)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCcc
Confidence 456889999999999999999999999999999999888889988853
No 77
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=70.07 E-value=2.3 Score=39.99 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 82 VLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 82 ~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.+|..|.+.+++.|.++||.+|+||++
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l 28 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPML 28 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEE
Confidence 578999999999999999999999998
No 78
>PLN02603 asparaginyl-tRNA synthetase
Probab=69.47 E-value=4 Score=42.50 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|.+|...+++.|..+||.+|.||++
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiL 253 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPII 253 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCee
Confidence 4678899999999999999999999998
No 79
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=69.11 E-value=3.5 Score=38.76 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=25.4
Q ss_pred ccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 250 GRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 250 GRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
.-|+..++.+.. | -.|+-||+||+|||+.++-..
T Consensus 222 ~~~~~yl~a~~~-G-~pp~~G~glGieRL~m~~~g~ 255 (269)
T cd00669 222 EYFEFYLKALEY-G-LPPHGGLGIGIDRLIMLMTNS 255 (269)
T ss_pred ccHHHHHHHHHc-C-CCCCceEeeHHHHHHHHHhCC
Confidence 357777777642 2 458999999999999887653
No 80
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=68.86 E-value=4.3 Score=39.14 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-..+|..|.+.+++.|...||-+|+||++
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l 49 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPIL 49 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SE
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCcee
Confidence 45678999999999999999999999998
No 81
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=66.98 E-value=4.8 Score=35.06 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCC
Q psy13909 84 RKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVP 120 (328)
Q Consensus 84 r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~ 120 (328)
|+.+.+.+++.|..+||++|.||+|.-...+..+|..
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~ 38 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHE 38 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCcc
Confidence 6789999999999999999999999666566666554
No 82
>COG4038 Predicted membrane protein [Function unknown]
Probab=65.20 E-value=3.7 Score=30.94 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=25.9
Q ss_pred cccccccCccchhhhhhcCCCCCCCCeeEEee
Q psy13909 242 SVGSVAGGGRYDKLVGMFDPRQRNVPCVGISI 273 (328)
Q Consensus 242 ~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsi 273 (328)
..++++|-||-|-.+.++. ..+|+||+|+
T Consensus 19 s~~~~~gp~~~dpiv~~LN---~EiPtvGVSL 47 (87)
T COG4038 19 TLGAAIGPARSDPVVKSLN---LELPTVGVSL 47 (87)
T ss_pred HHHhhcCCcccCcHHHHhc---cccccceeee
Confidence 3568899999999999996 7899999997
No 83
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=64.40 E-value=5.1 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCC
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVP 120 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~ 120 (328)
---+.++++.++++|..+||++|.||+|.-...++.++.+
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~ 278 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGID 278 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCc
Confidence 3447899999999999999999999999644555666654
No 84
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=64.19 E-value=4.9 Score=38.73 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.7
Q ss_pred CCCeeEEeeeHHHHHHHHHHh
Q psy13909 265 NVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~ 285 (328)
-.|+-||+||+|||+..+-..
T Consensus 288 ~pp~~G~giGidRL~m~~~g~ 308 (322)
T cd00776 288 MPPHGGFGLGLERLVMWLLGL 308 (322)
T ss_pred CCCCceeeEhHHHHHHHHcCC
Confidence 468999999999999887653
No 85
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=62.91 E-value=5.6 Score=37.62 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 82 VLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 82 ~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.+|.+|...+++.|...||.+|+||++
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L 28 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPIL 28 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCee
Confidence 578999999999999999999999998
No 86
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=62.27 E-value=7.1 Score=40.58 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=44.3
Q ss_pred CC-eeEEeeeHHHHHHHHHHhhhhh---hhc--------cCCCcceEEEEeCCch--hHHHHHHHHHHHHHCCCccC
Q psy13909 266 VP-CVGISIGVERIFSLIESKLAAE---RTK--------LRTTEVQVYVASAQKN--LLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 266 vP-avGfsiglerL~~~l~~~~~~~---~~~--------~~~~~~~VlV~s~~~~--~l~e~l~l~~~Lw~~GI~ae 328 (328)
+| .+=-|+|+|||+.++....... ... ..-.+.+|+|++..++ ....++++++.||++||+++
T Consensus 414 ~P~VIepS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~Ve 490 (551)
T TIGR00389 414 IPHVIEPSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIK 490 (551)
T ss_pred cceEEEcccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 56 5567889999997765432110 000 1115789999998854 67889999999999999874
No 87
>KOG1885|consensus
Probab=60.05 E-value=15 Score=37.32 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-..|.+|++.|+..|.+.||-+|+||++
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmm 252 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMM 252 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhh
Confidence 3568899999999999999999999998
No 88
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=57.98 E-value=7.5 Score=39.00 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCC
Q psy13909 84 RKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVP 120 (328)
Q Consensus 84 r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~ 120 (328)
..++.+.|++.|..+||++|.||+|.-...++.+|.+
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~ 242 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGID 242 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCC
Confidence 5899999999999999999999999655667777764
No 89
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=57.16 E-value=5.6 Score=37.62 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=22.7
Q ss_pred chhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 252 YDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 252 YD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
|+.++..+.. | -.|+-||+||+|||+..+-..
T Consensus 235 ~~~yl~a~~~-G-~pP~~G~giGidRL~m~~~g~ 266 (280)
T cd00777 235 FGFLLEAFKY-G-APPHGGIALGLDRLVMLLTGS 266 (280)
T ss_pred HHHHHHHHHC-C-CCCCCeEeEhHHHHHHHHcCC
Confidence 3455555532 2 458999999999999887653
No 90
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=57.15 E-value=18 Score=37.31 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=35.6
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHHh--cCCcccchHHH
Q psy13909 70 PKGTRDYGPEPMVLRKNVLEQIISVFKR--HGAQTIDTPVC 108 (328)
Q Consensus 70 pkGtrD~~p~~~~~r~~v~~~i~~~f~~--~G~~~IdtPvf 108 (328)
..|+-||+|--..+++.|.+.+++.|=. -+...||||++
T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii 69 (558)
T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPII 69 (558)
T ss_pred cccccccCCccHHHHHHHHHHHHHHHeeccCCeEEeccccc
Confidence 5799999999999999999999999965 47889999998
No 91
>PRK09350 poxB regulator PoxA; Provisional
Probab=55.94 E-value=7.2 Score=37.33 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=22.7
Q ss_pred ch-hhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 252 YD-KLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 252 YD-~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
|| .++..+.. | -.|+-||+||+|||+..+-.
T Consensus 268 ~d~~~l~a~~~-G-~pp~~G~giGidRL~m~~~g 299 (306)
T PRK09350 268 IDENLIAALEA-G-LPDCSGVALGVDRLIMLALG 299 (306)
T ss_pred CcHHHHHHHHc-C-CCCCCceEecHHHHHHHHcC
Confidence 65 46666542 2 56899999999999887653
No 92
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.94 E-value=10 Score=38.03 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=40.8
Q ss_pred CccCCchhHHHHHHHHHHHHHHHH-hcCCcccchHHHHHHHHHHHcCC
Q psy13909 73 TRDYGPEPMVLRKNVLEQIISVFK-RHGAQTIDTPVCLLDGLFESCGV 119 (328)
Q Consensus 73 trD~~p~~~~~r~~v~~~i~~~f~-~~G~~~IdtPvfil~~il~~~Gi 119 (328)
+--|.|.-+.+++.+.+.+++... ++||+++.||.++-..++..||-
T Consensus 162 ~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~ 209 (425)
T PRK05431 162 FYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQ 209 (425)
T ss_pred eEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCc
Confidence 455568899999999999988888 99999999999988888888874
No 93
>PRK06462 asparagine synthetase A; Reviewed
Probab=55.90 E-value=7.6 Score=37.71 Aligned_cols=52 Identities=29% Similarity=0.527 Sum_probs=35.2
Q ss_pred EEEEEEcCCccCCccccccccCc----cchhhhhhcCCCC---------------CCCCeeEEeeeHHHHHHHHHHh
Q psy13909 228 IYEAVLIGDRKKGESVGSVAGGG----RYDKLVGMFDPRQ---------------RNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 228 IFE~~~~~~~~~~~~~~sIa~GG----RYD~Lv~~f~~~g---------------~~vPavGfsiglerL~~~l~~~ 285 (328)
-||.+.++ +.+-|++|+ ||+.|...+...| .-.|+-||+||+|||+..+-..
T Consensus 247 rFdL~~~~------g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~ 317 (335)
T PRK06462 247 NYDLLLPE------GYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGL 317 (335)
T ss_pred EEEEEeeC------CCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCC
Confidence 78888864 345666666 5666665432111 1468999999999999877643
No 94
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=55.03 E-value=7.4 Score=37.65 Aligned_cols=28 Identities=18% Similarity=0.474 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
..+|..|...+++.|...||.+|+||++
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L 35 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPML 35 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcc
Confidence 4567888888888888888888888887
No 95
>PLN02221 asparaginyl-tRNA synthetase
Probab=54.27 E-value=11 Score=39.53 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=17.5
Q ss_pred CCCeeEEeeeHHHHHHHHHH
Q psy13909 265 NVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~ 284 (328)
..|+-||+||+|||+..+-.
T Consensus 534 ~pPh~G~GlGiERLvm~l~g 553 (572)
T PLN02221 534 TVKHCGFGLGFERMILFATG 553 (572)
T ss_pred CCCCceEEEeHHHHHHHHcC
Confidence 47899999999999988764
No 96
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=53.96 E-value=7.7 Score=37.10 Aligned_cols=31 Identities=23% Similarity=0.596 Sum_probs=22.5
Q ss_pred ch-hhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 252 YD-KLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 252 YD-~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
|| ..+..+.. | -.|+-||+||+|||+..+-.
T Consensus 263 ~d~~yl~~~~~-G-~pP~~G~GiGieRL~m~l~g 294 (304)
T TIGR00462 263 LDERFLAALEA-G-LPECSGVALGVDRLLMLALG 294 (304)
T ss_pred hhHHHHHHHHc-C-CCCCCceEEcHHHHHHHHhC
Confidence 54 35665532 2 46899999999999988764
No 97
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=53.78 E-value=8.7 Score=38.61 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|..|...+++.|..+||.+|+||++
T Consensus 132 ~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L 160 (428)
T TIGR00458 132 IFRIRSGVLESVREFLAEEGFIEVHTPKL 160 (428)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCce
Confidence 45678899999999999999999999998
No 98
>KOG1637|consensus
Probab=53.37 E-value=15 Score=37.27 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=43.3
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
-.+-.|.-=|+|.-..+...+++-|+..++..||++|.||.+.-..+++..|
T Consensus 178 ~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SG 229 (560)
T KOG1637|consen 178 HELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSG 229 (560)
T ss_pred ccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhcc
Confidence 4566788888999999999999999999999999999999985555555443
No 99
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=52.38 E-value=9.4 Score=38.64 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
..+|..|...+++.|..+||.+|+||++
T Consensus 133 l~~Rs~i~~~iR~f~~~~gf~EV~TP~L 160 (450)
T PRK03932 133 MRIRNTLAQAIHEFFNENGFVWVDTPII 160 (450)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCce
Confidence 5678899999999999999999999998
No 100
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=52.16 E-value=10 Score=38.21 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.-+.+|..|...+++.|..+||.+|+||++
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L 163 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKI 163 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 346678999999999999999999999998
No 101
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=50.24 E-value=12 Score=36.20 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=22.0
Q ss_pred hhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 254 KLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 254 ~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
..+..|.. | -.|+-||+||+|||+.++-.
T Consensus 286 ~yl~a~~~-G-~pp~~G~glGleRL~m~~~g 314 (329)
T cd00775 286 DFVTALEY-G-MPPTGGLGIGIDRLVMLLTD 314 (329)
T ss_pred HHHHHHHC-C-CCCCCcEEecHHHHHHHHcC
Confidence 46666642 2 46899999999999988764
No 102
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=48.95 E-value=13 Score=37.44 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.6
Q ss_pred CCCeeEEeeeHHHHHHHHHHh
Q psy13909 265 NVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~ 285 (328)
-.|+-||+||+||++.++-..
T Consensus 399 ~pp~~G~giGidRl~m~~~g~ 419 (437)
T PRK05159 399 MPPHGGFGLGLERLTMKLLGL 419 (437)
T ss_pred CCCCCeeeEhHHHHHHHHcCC
Confidence 468999999999999887643
No 103
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.25 E-value=18 Score=37.50 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-..+|.+|...+++.|-.+||-+|+||++
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiL 168 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPIL 168 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCcc
Confidence 34668899999999999999999999999
No 104
>PLN02678 seryl-tRNA synthetase
Probab=48.19 E-value=16 Score=37.01 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=41.1
Q ss_pred cCCc-hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 75 DYGP-EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 75 D~~p-~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
-|++ +-+.+++.+.+.+++....+||++|.||.++-..++..||-.+.
T Consensus 167 y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~ 215 (448)
T PLN02678 167 YYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQ 215 (448)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCccc
Confidence 4455 66888999999999999999999999999998999999995443
No 105
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=48.06 E-value=13 Score=37.29 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.3
Q ss_pred CCCeeEEeeeHHHHHHHHHH
Q psy13909 265 NVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~ 284 (328)
-.|+-||+||+|||+..+-.
T Consensus 390 ~pP~~G~GiGidRL~m~l~g 409 (428)
T TIGR00458 390 MPPHAGWGLGAERFVMFLLG 409 (428)
T ss_pred CCCcCceeecHHHHHHHHcC
Confidence 46899999999999988764
No 106
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=45.95 E-value=14 Score=38.00 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=43.6
Q ss_pred CC-eeEEeeeHHHHHHHHHHhhhhhhh----------ccCCCcceEEEEeCCch--hHHHHHHHHHHHHHCCCcc
Q psy13909 266 VP-CVGISIGVERIFSLIESKLAAERT----------KLRTTEVQVYVASAQKN--LLEERMRICSYLWKNGINA 327 (328)
Q Consensus 266 vP-avGfsiglerL~~~l~~~~~~~~~----------~~~~~~~~VlV~s~~~~--~l~e~l~l~~~Lw~~GI~a 327 (328)
+| .|==|+|+||++..+-...-...+ +..-.+++|.|.+..+. +...+.++.+.|++.|+.+
T Consensus 415 iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v 489 (558)
T COG0423 415 IPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNV 489 (558)
T ss_pred cCceeccCCCchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHHHHHhcCceE
Confidence 66 667799999998665433211110 12346789999998764 6778999999999999875
No 107
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=45.28 E-value=16 Score=37.00 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=17.8
Q ss_pred CCCeeEEeeeHHHHHHHHHHh
Q psy13909 265 NVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~ 285 (328)
..|+-||+||+|||+..+-..
T Consensus 412 ~pP~gG~GiGidRL~m~l~g~ 432 (450)
T PRK03932 412 SVPHSGFGLGFERLVAYITGL 432 (450)
T ss_pred CCCCCcEeehHHHHHHHHhCC
Confidence 358999999999999887653
No 108
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=44.61 E-value=13 Score=35.77 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=21.6
Q ss_pred chhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 252 YDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 252 YD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
|..+++.+.. | -.|+-||+||+|||+.++-..
T Consensus 290 ~~~yl~~~~~-G-~pp~~G~glG~eRLvm~l~g~ 321 (335)
T PF00152_consen 290 DEWYLEALKY-G-MPPHGGFGLGLERLVMLLLGL 321 (335)
T ss_dssp GHHHHHHHHT-T---SEEEEEEEHHHHHHHHHT-
T ss_pred hHhHHHhhhc-c-CcccCcceehHHHHHHHHcCC
Confidence 5555555532 2 468999999999999887754
No 109
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=44.38 E-value=7 Score=41.09 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=43.2
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFES 116 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~ 116 (328)
..|+||+||+|.++.++++|++.+.++|++|||++|.||+|....+|..
T Consensus 257 ~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~ 305 (638)
T PRK00413 257 EEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET 305 (638)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh
Confidence 5679999999999999999999999999999999999999944444443
No 110
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.12 E-value=26 Score=36.03 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=41.3
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLF 114 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il 114 (328)
..+|+-=|+|--.+++++|.+.+++.+++.|.+++--|+++-..++
T Consensus 35 ~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLw 80 (500)
T COG0442 35 PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELW 80 (500)
T ss_pred ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHH
Confidence 5799999999999999999999999999999999999999543333
No 111
>KOG2324|consensus
Probab=44.09 E-value=38 Score=33.49 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=41.3
Q ss_pred ccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 64 ~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-|+....+|+--|+|--.+..+++.+.+...|.+-|.+.|..|++
T Consensus 35 GfI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~l 79 (457)
T KOG2324|consen 35 GFIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPIL 79 (457)
T ss_pred CccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeeccc
Confidence 355667789999999999999999999999999999999999998
No 112
>PLN02603 asparaginyl-tRNA synthetase
Probab=44.05 E-value=15 Score=38.39 Aligned_cols=42 Identities=31% Similarity=0.608 Sum_probs=29.6
Q ss_pred ccccccCc----cchhhhhhcCCCC---------------CCCCeeEEeeeHHHHHHHHHH
Q psy13909 243 VGSVAGGG----RYDKLVGMFDPRQ---------------RNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 243 ~~sIa~GG----RYD~Lv~~f~~~g---------------~~vPavGfsiglerL~~~l~~ 284 (328)
++-|++|+ ||+.|.......| ...|.-||+||+||++..+-.
T Consensus 486 ~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg 546 (565)
T PLN02603 486 VGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATG 546 (565)
T ss_pred ceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhC
Confidence 45677776 6777766443111 146899999999999988764
No 113
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=44.02 E-value=15 Score=38.59 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
..+|.+|++.|++.|...||-+|+||++
T Consensus 253 fr~RS~Ii~aiR~Ff~~rGFlEVeTPiL 280 (585)
T PTZ00417 253 FITRTKIINYLRNFLNDRGFIEVETPTM 280 (585)
T ss_pred HHHHHHHHHHHHHHHHHCCeEEEeCCee
Confidence 4578999999999999999999999998
No 114
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=43.30 E-value=17 Score=37.22 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-..+|.+|...+++.|..+||.+|+||++
T Consensus 171 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL 199 (491)
T PRK00484 171 TFRKRSKIISAIRRFLDNRGFLEVETPML 199 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCce
Confidence 34578899999999999999999999998
No 115
>PLN02532 asparagine-tRNA synthetase
Probab=41.93 E-value=16 Score=38.54 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=30.0
Q ss_pred cccccCc----cchhhhhhcCCCC---------------CCCCeeEEeeeHHHHHHHHHHh
Q psy13909 244 GSVAGGG----RYDKLVGMFDPRQ---------------RNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 244 ~sIa~GG----RYD~Lv~~f~~~g---------------~~vPavGfsiglerL~~~l~~~ 285 (328)
|.|++|+ |||.|...+...| ...|.-||+||+|||+..+-..
T Consensus 555 GEIigGsqRE~r~e~L~~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl 615 (633)
T PLN02532 555 GTVITGSQNEERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGL 615 (633)
T ss_pred eEEeeCcEeHHHHHHHHHHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCC
Confidence 4566666 7888876553111 1469999999999999887653
No 116
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=40.97 E-value=18 Score=37.17 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-..+|..|...+++.|...||.+|+||++
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L 199 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPML 199 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCee
Confidence 34578899999999999999999999998
No 117
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=40.62 E-value=17 Score=36.76 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|..|...+++.|..+||.+|+||++
T Consensus 136 lr~Rs~i~~~~r~~~~~~gf~eV~TP~l 163 (453)
T TIGR00457 136 MRVRNALSQAIHRYFQENGFTWVSPPIL 163 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCeE
Confidence 5678999999999999999999999998
No 118
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=40.58 E-value=20 Score=38.51 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|..|...+++.|..+||-+|+||++
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL 183 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPIL 183 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 45678999999999999999999999998
No 119
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=40.53 E-value=19 Score=37.71 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|.+|...+++.|...||.+|+||++
T Consensus 138 lr~Rs~i~~~iR~ff~~~gFiEVeTP~L 165 (583)
T TIGR00459 138 LKLRHKVTKAVRNFLDQQGFLEIETPML 165 (583)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCee
Confidence 4678999999999999999999999998
No 120
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=40.47 E-value=17 Score=37.41 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-..+|..|...+++.|...||-+|+||++
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL 211 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMM 211 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCee
Confidence 35678999999999999999999999998
No 121
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=40.16 E-value=18 Score=37.88 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=30.4
Q ss_pred ccccccCc----cchhhhhhcCCCC---------------CCCCeeEEeeeHHHHHHHHHH
Q psy13909 243 VGSVAGGG----RYDKLVGMFDPRQ---------------RNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 243 ~~sIa~GG----RYD~Lv~~f~~~g---------------~~vPavGfsiglerL~~~l~~ 284 (328)
++-|++|| |||.|...+-.+| ...|.-||+||+|||+..+-.
T Consensus 507 iGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltG 567 (586)
T PTZ00425 507 IGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTG 567 (586)
T ss_pred ceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcC
Confidence 45677777 7888876552111 146999999999999988764
No 122
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=40.15 E-value=21 Score=36.85 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=41.7
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHH-HHhcCCcccchHHHHHHHHHHHcC
Q psy13909 70 PKGTRDYGPEPMVLRKNVLEQIISV-FKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 70 pkGtrD~~p~~~~~r~~v~~~i~~~-f~~~G~~~IdtPvfil~~il~~~G 118 (328)
-+|+-=|.|.-+.+++.+.+.+++. ++++||+++.+|.++=..+++.+|
T Consensus 212 G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksG 261 (517)
T PRK00960 212 GRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMR 261 (517)
T ss_pred CCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcC
Confidence 3788888899999999999999875 788999999999997666666655
No 123
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=40.10 E-value=18 Score=37.92 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=22.8
Q ss_pred chh-hhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 252 YDK-LVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 252 YD~-Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
||. .+..+.. | -.|+-||+||+|||+.++-..
T Consensus 537 ~Dedfl~Aley-G-mPPtgG~GiGIDRLvMlltg~ 569 (585)
T PTZ00417 537 FDAAFCTSLEY-G-LPPTGGLGLGIDRITMFLTNK 569 (585)
T ss_pred cHHHHHHHHHc-C-CCCCceEEEcHHHHHHHHcCC
Confidence 443 6665532 2 357999999999999887753
No 124
>PLN02502 lysyl-tRNA synthetase
Probab=40.10 E-value=18 Score=37.67 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|..|...|++.|...||.+|+||++
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL 256 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPML 256 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCee
Confidence 34678899999999999999999999998
No 125
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=40.05 E-value=19 Score=37.14 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=17.3
Q ss_pred CCCeeEEeeeHHHHHHHHHH
Q psy13909 265 NVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~ 284 (328)
-.|+-||+||+|||+.++-.
T Consensus 469 ~PP~gG~GiGiDRLvMlltg 488 (505)
T PRK12445 469 LPPTAGLGIGIDRMIMLFTN 488 (505)
T ss_pred CCCCCeEEEhHHHHHHHHcC
Confidence 45899999999999988765
No 126
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=39.65 E-value=18 Score=37.10 Aligned_cols=21 Identities=29% Similarity=0.628 Sum_probs=17.7
Q ss_pred CCCeeEEeeeHHHHHHHHHHh
Q psy13909 265 NVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~ 285 (328)
-.|+-||+||+|||+.++-..
T Consensus 460 ~PP~gG~GiGiDRLvMlltg~ 480 (496)
T TIGR00499 460 MPPTGGLGIGIDRLVMLLTDS 480 (496)
T ss_pred CCCCceEEEhHHHHHHHHhCC
Confidence 358999999999999887753
No 127
>PLN02221 asparaginyl-tRNA synthetase
Probab=39.23 E-value=20 Score=37.43 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|..|...+++.|..+||.+|.||.+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~L 198 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPII 198 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCee
Confidence 36778999999999999999999999998
No 128
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=39.16 E-value=20 Score=36.81 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=23.0
Q ss_pred ch-hhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 252 YD-KLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 252 YD-~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
|| ..+..+.. | -.|+-||+||+|||+.++-..
T Consensus 443 ~d~~yl~a~~~-G-~PP~gG~GiGiDRLvm~ltg~ 475 (491)
T PRK00484 443 MDEDFLRALEY-G-MPPTGGLGIGIDRLVMLLTDS 475 (491)
T ss_pred cHHHHHHHHHC-C-CCCCCeEEEeHHHHHHHHhCC
Confidence 55 46665532 2 458999999999999887653
No 129
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=38.88 E-value=23 Score=26.95 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHCCCccC
Q psy13909 308 NLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 308 ~~l~e~l~l~~~Lw~~GI~ae 328 (328)
.....+.++++.||++||+++
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~ 33 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVE 33 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEE
Confidence 456789999999999999764
No 130
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=38.52 E-value=19 Score=38.21 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|.+.|++.|...||-+|+||++
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL 260 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVL 260 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEe
Confidence 35678999999999999999999999998
No 131
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=37.81 E-value=51 Score=34.48 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=45.0
Q ss_pred cCccchhhhhh-c-CCCCCCCC--eeEEeeeHHHHHHHHHH-hhhhhhh--ccCCCcceEEEEeCCc---hhHHHHHHHH
Q psy13909 248 GGGRYDKLVGM-F-DPRQRNVP--CVGISIGVERIFSLIES-KLAAERT--KLRTTEVQVYVASAQK---NLLEERMRIC 317 (328)
Q Consensus 248 ~GGRYD~Lv~~-f-~~~g~~vP--avGfsiglerL~~~l~~-~~~~~~~--~~~~~~~~VlV~s~~~---~~l~e~l~l~ 317 (328)
=|=||-.-++. | +..|...| -.-++||++||+.++-+ ......- ...-.+.+|.|++... .....+-+|.
T Consensus 417 LG~kYS~~~~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~~~~~~a~~l~ 496 (568)
T TIGR00409 417 LGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQLAEELY 496 (568)
T ss_pred chhhhHHhcCCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChHHHHHHHHHHH
Confidence 34466654331 1 22233332 23355789999876543 2110000 1234578999888753 3445577888
Q ss_pred HHHHHCCCcc
Q psy13909 318 SYLWKNGINA 327 (328)
Q Consensus 318 ~~Lw~~GI~a 327 (328)
+.|.++||.+
T Consensus 497 ~~L~~~gi~v 506 (568)
T TIGR00409 497 SELLAQGVDV 506 (568)
T ss_pred HHHHhCCCEE
Confidence 8899999875
No 132
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=37.65 E-value=21 Score=37.52 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|...+++.|...||-+|+||++
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L 168 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPIL 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCee
Confidence 34568899999999999999999999998
No 133
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=37.06 E-value=44 Score=28.76 Aligned_cols=28 Identities=7% Similarity=-0.044 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHcCCCceEEEccCC
Q psy13909 190 VGLAAIKLLLSYCDIYELTDKVIFDLSL 217 (328)
Q Consensus 190 e~l~~L~~l~~~L~~~gi~~~i~fDlsl 217 (328)
+..+.|.+|.+-|...||.-.+.||.++
T Consensus 68 ~Q~~~l~~i~~sl~~~gI~~~~~f~~ti 95 (148)
T cd02685 68 QQIEALEEIKQSLASHGVEFTWEFSDTI 95 (148)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEECCCc
Confidence 4446777788899999986666666543
No 134
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=36.93 E-value=24 Score=37.12 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=7.6
Q ss_pred CeeEEeeeHHHHHHHHH
Q psy13909 267 PCVGISIGVERIFSLIE 283 (328)
Q Consensus 267 PavGfsiglerL~~~l~ 283 (328)
|--||++|+||++.+|.
T Consensus 528 ph~g~~~G~dr~~~~~~ 544 (588)
T PRK00476 528 PHGGIAFGLDRLVMLLA 544 (588)
T ss_pred CCcceeccHHHHHHHHc
Confidence 44444444444444433
No 135
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=36.68 E-value=1.2e+02 Score=31.20 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 82 VLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 82 ~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
..|.+|++.|++.|...||-+++||++
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~l 207 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPML 207 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCeEeccccc
Confidence 346789999999999999999999998
No 136
>KOG2395|consensus
Probab=36.51 E-value=20 Score=37.03 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=41.0
Q ss_pred cCCCce--EEEccCCcc---------CCccccceEEEEEEcCCccCCccccccccCcc------chhhhhhcCCCCCCCC
Q psy13909 205 YELTDK--VIFDLSLAR---------GLDYYTGIIYEAVLIGDRKKGESVGSVAGGGR------YDKLVGMFDPRQRNVP 267 (328)
Q Consensus 205 ~gi~~~--i~fDlsl~R---------gldYYTGiIFE~~~~~~~~~~~~~~sIa~GGR------YD~Lv~~f~~~g~~vP 267 (328)
.|++++ +.+||. ++ +-+|-||.-|+++... .-|+|+.|++ ||.+..+- | ...|
T Consensus 399 vGLs~n~vfriDpR-v~~~~kl~~~q~kqy~~k~nFsc~aTT------~sG~IvvgS~~GdIRLYdri~~~A--K-TAlP 468 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPR-VQGKNKLAVVQSKQYSTKNNFSCFATT------ESGYIVVGSLKGDIRLYDRIGRRA--K-TALP 468 (644)
T ss_pred EeecCCceEEeccc-ccCcceeeeeeccccccccccceeeec------CCceEEEeecCCcEEeehhhhhhh--h-hccc
Confidence 455532 668887 44 4599999999999886 3478888887 77743332 1 4578
Q ss_pred eeEEee
Q psy13909 268 CVGISI 273 (328)
Q Consensus 268 avGfsi 273 (328)
+.|=+|
T Consensus 469 gLG~~I 474 (644)
T KOG2395|consen 469 GLGDAI 474 (644)
T ss_pred ccCCce
Confidence 777665
No 137
>PLN02502 lysyl-tRNA synthetase
Probab=36.04 E-value=25 Score=36.65 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=21.0
Q ss_pred hhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 255 LVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 255 Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
.+..+.. | -.|+-||+||+|||+.++-..
T Consensus 509 fl~aley-G-mPP~gG~GiGiDRLvMlltg~ 537 (553)
T PLN02502 509 FCTALEY-G-LPPTGGWGLGIDRLVMLLTDS 537 (553)
T ss_pred HHHHHHc-C-CCCCceEEehHHHHHHHHcCC
Confidence 5554432 2 358999999999999887753
No 138
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=34.55 E-value=23 Score=33.87 Aligned_cols=19 Identities=32% Similarity=0.837 Sum_probs=16.0
Q ss_pred CeeEEeeeHHHHHHHHHHh
Q psy13909 267 PCVGISIGVERIFSLIESK 285 (328)
Q Consensus 267 PavGfsiglerL~~~l~~~ 285 (328)
||-|+++|+|||+.++-..
T Consensus 290 ~cSGvALG~DRLvmLalg~ 308 (322)
T COG2269 290 PCSGVALGFDRLVMLALGA 308 (322)
T ss_pred CcccceecHHHHHHHHcCc
Confidence 5999999999999876543
No 139
>KOG3156|consensus
Probab=34.27 E-value=1.6e+02 Score=26.82 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHH
Q psy13909 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQ 148 (328)
Q Consensus 109 il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~ 148 (328)
.+..-++..|+|..+.++|.++|-..-..+.+.|.++++.
T Consensus 49 alvr~LE~~Gf~~kQAETIt~aiT~v~ndsl~~vsk~~vt 88 (220)
T KOG3156|consen 49 ALVRSLEAAGFDSKQAETITSAITTVLNDSLETVSKELVT 88 (220)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5667789999999999999999987766677777776654
No 140
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=33.89 E-value=27 Score=35.43 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=17.6
Q ss_pred CCCeeEEeeeHHHHHHHHHHh
Q psy13909 265 NVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~ 285 (328)
..|.=||+||+||++..+-..
T Consensus 415 ~pPhgG~GiGieRlvm~l~g~ 435 (453)
T TIGR00457 415 SVPHSGFGLGFERLLAYITGL 435 (453)
T ss_pred CCCCCcEeehHHHHHHHHhCC
Confidence 358999999999999887653
No 141
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=33.70 E-value=30 Score=35.68 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=41.8
Q ss_pred CCCCccCCchhHHHHHHHHHHHH-HHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 70 PKGTRDYGPEPMVLRKNVLEQII-SVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 70 pkGtrD~~p~~~~~r~~v~~~i~-~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
-+|+-=|.|.-+.+++.+.+.++ ..++++||+++.+|.+|-...+..+|
T Consensus 212 G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~g 261 (520)
T TIGR00415 212 GRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMR 261 (520)
T ss_pred ccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccC
Confidence 37888888999999999999997 57789999999999997776666654
No 142
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=32.92 E-value=69 Score=21.42 Aligned_cols=37 Identities=22% Similarity=0.070 Sum_probs=26.7
Q ss_pred HHHHHhHHHHHHhhccCCC-------CHHHHHHHHHHHHHHHHhh
Q psy13909 8 NEIKEQRDVIRKLKDLVPP-------NIEIMKKEMDKLKELKSKL 45 (328)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~ 45 (328)
.+|..++..++.|+ .... +...+...|+++..|.+.|
T Consensus 2 vqia~lt~~i~~L~-~hl~~~~kD~~~kr~L~~~v~kr~rLl~yl 45 (46)
T cd00677 2 VQIALLTERIRNLK-EHLAKNKKDKHSKRGLDLLVSKRLRLLKYL 45 (46)
T ss_pred HHHHHHHHHHHHHH-HHHHHCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 35677778888877 4333 5778888999888887665
No 143
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=31.69 E-value=4.1e+02 Score=27.78 Aligned_cols=156 Identities=11% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHHhcCCcccc----------hHHHHHHHHHHHcCCChhhHHHHHHHhhhhCccChHH
Q psy13909 72 GTRDYGPEPMVLRKNVLEQIISVFKRHGAQTID----------TPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWED 141 (328)
Q Consensus 72 GtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~Id----------tPvfil~~il~~~Gi~~~~~~~i~~~idkldk~~~~~ 141 (328)
|.....+++.+.....- ..--++|||-.|- |.--|+..+-+.+.=+.+ ..+..+++.+.|+.|-.
T Consensus 94 gl~~~~~~~~~~l~~lN---~~Y~~kFGf~fvi~v~~~~a~g~~~~~il~~~~~Rl~n~~~--~E~~~a~~e~~~I~~~R 168 (591)
T PRK13590 94 GLTHCTPEEFARIQQLN---ADYNARFGFPFILAVRGPRGLGLSRQEIIATFARRLDNHPD--FELAEALRNIHRIAEIR 168 (591)
T ss_pred hcccCCHHHHHHHHHHH---HHHHHhCCCeEEEEEcCccccCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHH
Confidence 45555554444333333 3344567988764 344477777666654432 23334444444444432
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhcc--------ccccchhhhHHhHHHHHHHHHHHHHcCCCceEEE
Q psy13909 142 VRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQD--------DLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIF 213 (328)
Q Consensus 142 v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~--------~~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~f 213 (328)
+.+ + .+-.+...++|...+. .+.++... ..+.-++...++.+. +.+.++.+|+. .+.+
T Consensus 169 l~~-~---~~~~~~~~~r~~~~~~------~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~---l~~~~~~~Gl~-~v~~ 234 (591)
T PRK13590 169 LND-K---FGAEPVLGNDVWDWAE------RLAAHSDPGYAEKGQLTVTYLTDAHRACAQQ---ISHWMRDCGFD-EVHI 234 (591)
T ss_pred HHH-H---hCCCchHHHHHHHHHH------HHhcccCCCCCCCCceeeeeCCHHHHHHHHH---HHHHHHHcCCC-eeeE
Confidence 222 2 2344555555533221 11111000 011112222332333 55667888984 3667
Q ss_pred ccCCccCCccccceEEEEEEcCCc------cCCccccccccCccchhhh
Q psy13909 214 DLSLARGLDYYTGIIYEAVLIGDR------KKGESVGSVAGGGRYDKLV 256 (328)
Q Consensus 214 Dlsl~RgldYYTGiIFE~~~~~~~------~~~~~~~sIa~GGRYD~Lv 256 (328)
|.- |=+|-.+ ++.+ --|...++|-.|||||+-.
T Consensus 235 D~~---------GNl~~~~-~g~~~~~~~v~~gsHlDTV~~gG~~DG~~ 273 (591)
T PRK13590 235 DAV---------GNVVGRY-KGSTPQAKRLLTGSHYDTVRNGGKYDGRL 273 (591)
T ss_pred CCC---------CCEEEEe-cCCCCCCCeEEEecccccCCCCCCcccHH
Confidence 653 3333221 1100 0011567899999999753
No 144
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=31.69 E-value=27 Score=37.11 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=20.9
Q ss_pred hhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 255 LVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 255 Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
.+..|.. | -.|+-||+||+|||+.++-..
T Consensus 522 fL~Aley-G-mPPtgG~GIGIDRLvMlltg~ 550 (659)
T PTZ00385 522 FLKSLQV-G-LPPTAGWGMGIDRALMLLTNS 550 (659)
T ss_pred HHHHHHc-C-CCCCCceEEcHHHHHHHHcCC
Confidence 5555532 1 358999999999999887643
No 145
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=30.70 E-value=63 Score=31.11 Aligned_cols=63 Identities=13% Similarity=0.274 Sum_probs=45.5
Q ss_pred CccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChhh---HHHHHHHhhhhCccChH
Q psy13909 73 TRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQ---FRTICSSVDKLDKWSWE 140 (328)
Q Consensus 73 trD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~~---~~~i~~~idkldk~~~~ 140 (328)
..+|.+++.+.|+.|++...+..+.|-.+..-- -+..+.+.||++.+. ++.|...+.+ .++|.
T Consensus 58 ~v~YT~eE~~~W~~l~~r~~~l~~~~Ac~eyl~---~l~~L~~~~gl~~d~IPql~dvn~~L~~--~TGw~ 123 (306)
T cd03347 58 RVEYTEEEKKTWGTVFRELKSLYPTHACYEYNH---VFPLLEKNCGFSEDNIPQLEDVSNFLQT--CTGFR 123 (306)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhccccCHHHHH---HHHHHHHhcCCCcCCCCCHHHHHHHHHh--ccCCE
Confidence 889999999999999999999999887665211 244567899987654 4445554443 24664
No 146
>KOG1637|consensus
Probab=29.94 E-value=83 Score=32.16 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=39.6
Q ss_pred eHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCcc
Q psy13909 274 GVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINA 327 (328)
Q Consensus 274 glerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~a 327 (328)
.+||.+.+|.++....-+ ....+-++.|++.+...+..+-+++++|.++|+-+
T Consensus 437 SvERmiaiL~E~~~gkwP-FWlSPRq~~vIpVse~~~~ya~~V~~ql~~a~f~~ 489 (560)
T KOG1637|consen 437 SVERMIAILLESYGGKWP-FWLSPRQAVVIPVSEGPLDYATSVQKQLEEAGFYV 489 (560)
T ss_pred hHHHHHHHHHHHhCCCCC-eeeccceEEEEECCCcchhHHHHHHHHHHhhhcee
Confidence 489999998876432111 23355689999999888889999999999999543
No 147
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=29.85 E-value=33 Score=38.77 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|.+|...|++.|...||-+|+||++
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL 797 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPIL 797 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEe
Confidence 4568899999999999999999999998
No 148
>KOG2509|consensus
Probab=28.42 E-value=90 Score=31.53 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCC
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVP 120 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~ 120 (328)
.-+.+.+.+++...+.+.++||.+|-||.|+=..+++.||.-
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~ 224 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQL 224 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccC
Confidence 345667889999999999999999999999999999999963
No 149
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=28.36 E-value=1.3e+02 Score=20.64 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHcCC-ChhhHHHHHHHhhhh
Q psy13909 89 EQIISVFKRHGAQTIDTPVCLLDGLFESCGV-PAKQFRTICSSVDKL 134 (328)
Q Consensus 89 ~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi-~~~~~~~i~~~idkl 134 (328)
....+.|+.+|+.....+...-+..++.+|| +...+..+...+..+
T Consensus 19 ~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l 65 (68)
T smart00454 19 EQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKL 65 (68)
T ss_pred HHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3477788888855444333332666788888 444555566655543
No 150
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=27.70 E-value=2.9e+02 Score=26.18 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=44.5
Q ss_pred HHHHHHHHHHH-HHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccch-hhhhhcCCCCCCC--C
Q psy13909 192 LAAIKLLLSYC-DIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYD-KLVGMFDPRQRNV--P 267 (328)
Q Consensus 192 l~~L~~l~~~L-~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD-~Lv~~f~~~g~~v--P 267 (328)
+.+|+.+++.+ ..+|+..++.|.++....+ +-|.--.+++.. + .+--.|++-|.-. +++..|| -+. |
T Consensus 187 f~dLKg~le~ll~~l~~~~~~~~~~~~~p~~--~Ps~e~~i~~~~-g---~~w~eiG~~G~vhP~Vl~~~g---i~~~~~ 257 (294)
T TIGR00468 187 FTNLKGFLEEFLKKMFGETEIRFRPSYFPFT--EPSAEIDVYCWE-G---KTWLEVLGAGMFRPEVLEPMG---IDPTYP 257 (294)
T ss_pred HHHHHHHHHHHHHHhCCCcceeeccCCCCCC--CCCEEEEEEEeC-C---CccEEEEEeccCcHHHHHHCC---CCCCCe
Confidence 44555444433 5567654567766543221 223322333311 0 0001466677666 4556676 445 8
Q ss_pred eeEEeeeHHHHHHHH
Q psy13909 268 CVGISIGVERIFSLI 282 (328)
Q Consensus 268 avGfsiglerL~~~l 282 (328)
++.|.|++|||..+.
T Consensus 258 v~afel~lerl~m~~ 272 (294)
T TIGR00468 258 GFAWGIGIERLAMLK 272 (294)
T ss_pred EEEEEeeHHHHHHHH
Confidence 999999999997653
No 151
>KOG0554|consensus
Probab=27.00 E-value=37 Score=33.83 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 76 YGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 76 ~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+....+++|..+.-...+.|..|+|..|+||++
T Consensus 127 ~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPii 159 (446)
T KOG0554|consen 127 KVGAVLRVRSALAFATHSFFQSHDFTYINTPII 159 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceEecCcEe
Confidence 345678889999999999999999999999998
No 152
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=26.84 E-value=41 Score=35.33 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=24.0
Q ss_pred cchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 251 RYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 251 RYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
++..|+.-|.. | --|--|+++|+|||+.+|...
T Consensus 509 ~f~~ll~Al~y-G-~PPhgG~alG~DRlvmlLt~~ 541 (583)
T TIGR00459 509 KFGFLLEAFKY-G-TPPHAGFALGLDRLMMLLTGT 541 (583)
T ss_pred HHHHHHHHHhc-C-CCCcCceeccHHHHHHHHcCC
Confidence 45556665543 2 347999999999999998754
No 153
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=26.34 E-value=85 Score=30.12 Aligned_cols=69 Identities=13% Similarity=0.270 Sum_probs=47.5
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChhh---HHHHHHHhhhhCccChH
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQ---FRTICSSVDKLDKWSWE 140 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~~---~~~i~~~idkldk~~~~ 140 (328)
.--|-|..+|.+++.+.|..|++.....++.|-.+..-- -+..+-+.||++.+. ++.|...+.+ .++|.
T Consensus 51 ~g~~ip~v~YT~eE~~~W~~l~~r~~~l~~~~Ac~eyl~---gl~~L~~~~gl~~d~IPql~dvn~~L~~--~TGw~ 122 (298)
T cd03345 51 HGDPIPRVEYTAEEIATWKEVYKTLKDLHATHACKEYLD---AFQLLEKECGYSEDRIPQLEDVSEFLKE--RTGFQ 122 (298)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHhccCCCCCCCCCHHHHHHHHHh--ccCCE
Confidence 335678999999999999999999999998887655211 233444567887653 4455555543 24663
No 154
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=26.15 E-value=2.6e+02 Score=20.35 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=23.8
Q ss_pred HHHHHH-HHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhc
Q psy13909 109 LLDGLF-ESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQ 166 (328)
Q Consensus 109 il~~il-~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l 166 (328)
++..+| +.+|||.+....-.. --++.+++++.++|..++..
T Consensus 17 ~le~fl~~~lgv~~~~a~~~A~-----------------~iEH~is~e~~~~l~~~l~~ 58 (71)
T PF02742_consen 17 ILEEFLVEVLGVDEEEAEEEAC-----------------RIEHVISPETIERLCKFLGF 58 (71)
T ss_dssp HHHHHHHHTTT--HHHHHHHHH-----------------HHGCCS-HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-----------------HHHccCCHHHHHHHHHHhcC
Confidence 677777 678887654332110 11567888888888887653
No 155
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=25.83 E-value=1.2e+02 Score=31.42 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=51.0
Q ss_pred HHHHHHHHHHH-HHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchh-hhhhcCCCCCCCCee
Q psy13909 192 LAAIKLLLSYC-DIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDK-LVGMFDPRQRNVPCV 269 (328)
Q Consensus 192 l~~L~~l~~~L-~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~-Lv~~f~~~g~~vPav 269 (328)
+.+++.+++.| ..+|+. ++.|.++..+.-.|+-|.--+++...... ++...|+.=|.++- ++..|+ -+.|++
T Consensus 246 FfDlKGiLE~LL~~LGI~-~i~f~pse~~~p~fHPGRSAeI~v~hp~~--dGwkeIG~fGELHP~VLk~fD---I~~pV~ 319 (529)
T PRK06253 246 VDDGKAVAEGLLSQFGFT-KFKFRPDEKRSKYYTPDTQTEVYAYHPKL--DGWVEVATFGIYSPVALAEYG---IDVPVM 319 (529)
T ss_pred HHHHHHHHHHHHHHcCCC-eEEEeecccCCCCcCCCeEEEEEEEeecC--CCCEEEEEEEEECHHHHHHcC---CCCceE
Confidence 44555444443 567875 45665532122235677777776621000 01124667777874 446776 567899
Q ss_pred EEeeeHHHHHHHHHH
Q psy13909 270 GISIGVERIFSLIES 284 (328)
Q Consensus 270 GfsiglerL~~~l~~ 284 (328)
.|.+++|+|..+...
T Consensus 320 aFELDLErL~~i~~~ 334 (529)
T PRK06253 320 NLGLGVERLAMILYG 334 (529)
T ss_pred EEEEeHHHHHhhhcC
Confidence 999999999876543
No 156
>COG4927 Predicted choloylglycine hydrolase [General function prediction only]
Probab=25.75 E-value=43 Score=31.78 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=35.7
Q ss_pred cCCccCCccccceE------EEEEEcCCccCCcccc-ccccCccchhhhhh-------cCCCCCCCCeeEEeeeH
Q psy13909 215 LSLARGLDYYTGII------YEAVLIGDRKKGESVG-SVAGGGRYDKLVGM-------FDPRQRNVPCVGISIGV 275 (328)
Q Consensus 215 lsl~RgldYYTGiI------FE~~~~~~~~~~~~~~-sIa~GGRYD~Lv~~-------f~~~g~~vPavGfsigl 275 (328)
|-++|+.||.-.++ ||-...+.. ..| +=+-|||=|++=+. |+ ++..|+-||++++
T Consensus 110 ~~~~RN~Dy~p~i~~~rdstf~~t~Sgl~----~Ig~~~r~~g~~DGmNE~GLa~g~tf~--~~~~~~~GF~~~~ 178 (336)
T COG4927 110 PALIRNFDYPPSIVSDRDSTFEMTESGLK----VIGKAQRWGGCVDGMNEEGLAAGITFG--GGRSQGRGFSIIL 178 (336)
T ss_pred ceEeecCCCCcceeccccceeeeccCChh----eeechheeeccccccccccceeeeeec--cCcccCCCeeEEe
Confidence 56789999987653 554433221 112 33478999987542 44 4678999999985
No 157
>PLN02903 aminoacyl-tRNA ligase
Probab=25.59 E-value=45 Score=35.50 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHh-cCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKR-HGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~-~G~~~IdtPvf 108 (328)
-+.+|.+|...+++.|.. .||-+|+||++
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL 231 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPIL 231 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCee
Confidence 356788999999999996 99999999998
No 158
>PLN02903 aminoacyl-tRNA ligase
Probab=25.42 E-value=45 Score=35.50 Aligned_cols=11 Identities=9% Similarity=-0.010 Sum_probs=6.6
Q ss_pred cceEEEEeCCc
Q psy13909 297 EVQVYVASAQK 307 (328)
Q Consensus 297 ~~~VlV~s~~~ 307 (328)
.-|+++.++++
T Consensus 455 ~GD~~~~~a~~ 465 (652)
T PLN02903 455 PGDLILFAAGP 465 (652)
T ss_pred CCcEEEEECCc
Confidence 44666666664
No 159
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=24.91 E-value=6.7e+02 Score=26.26 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=74.8
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHHhcCCcccc----------hHHHHHHHHHHHcCCChhhHHHHHHHhhhhCccChHH
Q psy13909 72 GTRDYGPEPMVLRKNVLEQIISVFKRHGAQTID----------TPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWED 141 (328)
Q Consensus 72 GtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~Id----------tPvfil~~il~~~Gi~~~~~~~i~~~idkldk~~~~~ 141 (328)
|.-...+.+.....++=.. --++|||-.|- +.-=|+..+-+.++=+.+ ..+..+++.+.|+.|-.
T Consensus 94 gl~~~~~~~~~~l~~lN~~---Y~~kFGf~fii~~~g~~~~~~~~~~il~~l~~Rl~n~~e--~E~~~a~~e~~~I~~~R 168 (591)
T PRK13799 94 GLNLCTPEEFAAIQKLNAD---YGKKFGFPFILAVKGARGAGLAKAEIIATFERRLHNHPD--DELGEALRNIGRIAEIR 168 (591)
T ss_pred hcccCCHHHHHHHHHHHHH---HHHhcCCeEEEEEcCcccCCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHH
Confidence 5555555554444444333 33566988762 233366666666644332 23334444444444432
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhc--------cccccchhhhHHhHHHHHHHHHHHHHcCCCceEEE
Q psy13909 142 VRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQ--------DDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIF 213 (328)
Q Consensus 142 v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~--------~~~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~f 213 (328)
+. .-.+-+|...++|...+.- +.++-. -..+.-++.-.++. ..+.+.++..|+. .+.+
T Consensus 169 l~----~l~~~~~~~~~r~~~~l~~------l~~~~~~~~~~~~g~~R~~~s~~~~~~~---~~~~~~~~~~Gl~-~v~~ 234 (591)
T PRK13799 169 IN----DKFGYTPAIGADVMDWAED------IAAHSDPGYADEGALTCTYLSDAHRACA---NQISDWMRDAGFD-EVEI 234 (591)
T ss_pred HH----HHhCCChhHHHHHHHHHHH------HHhccCCCCCCCCceEeeeCCHHHHHHH---HHHHHHHHHcCCC-eEeE
Confidence 22 2235567777776443321 111100 00111122233333 3456677888884 2556
Q ss_pred ccCCccCCccccceEEEEEEcCC-c-----cCCccccccccCccchhhhhhc
Q psy13909 214 DLSLARGLDYYTGIIYEAVLIGD-R-----KKGESVGSVAGGGRYDKLVGMF 259 (328)
Q Consensus 214 Dlsl~RgldYYTGiIFE~~~~~~-~-----~~~~~~~sIa~GGRYD~Lv~~f 259 (328)
|.- |=+|-.+ ++. + --|...++|-.|||||+-.+..
T Consensus 235 D~~---------gNv~~~~-~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~ 276 (591)
T PRK13799 235 DAV---------GNVVGRY-KAADDDAKTLITGSHYDTVRNGGKYDGREGIF 276 (591)
T ss_pred CCC---------CCEEEEc-CCCCCCCCeEEEeccccccCCCCccccHHHHH
Confidence 553 3333221 110 0 0011567899999999864443
No 160
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=24.26 E-value=45 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.674 Sum_probs=19.5
Q ss_pred cCccchhhhhhcCCCCCCCCeeEEeeeH
Q psy13909 248 GGGRYDKLVGMFDPRQRNVPCVGISIGV 275 (328)
Q Consensus 248 ~GGRYD~Lv~~f~~~g~~vPavGfsigl 275 (328)
|||=||..+..+...+...+.||+++..
T Consensus 138 GgGyYDR~L~~~~~~~~~~~~igl~~~~ 165 (186)
T PF01812_consen 138 GGGYYDRFLARLPPGRKKPLKIGLAFDF 165 (186)
T ss_dssp SSTHHHHHHHHHTS-SS--EEEEEE-GG
T ss_pred CCCHHHhHHHhhhcccCCCeEEEEeehh
Confidence 7899999999997433467789988863
No 161
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=23.89 E-value=7.7e+02 Score=25.70 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=43.8
Q ss_pred eeCCCCCccCCchhHH------HHHHHHHHHHHHHHhcCCcccchHHH----------------HHHHHHHHc-------
Q psy13909 67 LKTPKGTRDYGPEPMV------LRKNVLEQIISVFKRHGAQTIDTPVC----------------LLDGLFESC------- 117 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~------~r~~v~~~i~~~f~~~G~~~IdtPvf----------------il~~il~~~------- 117 (328)
+-+|++....+|.-.- --...++.+++.+-+.||++...|++ +||..|=..
T Consensus 26 ~~~~~~~~~~yp~~~~~~~~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~v 105 (529)
T PRK06253 26 LIKPPGLNERYPRLKPSYGKPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNV 105 (529)
T ss_pred cccCCCccccCCcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCC
Confidence 3355666666663211 12456678899999999999999998 666665544
Q ss_pred CCChhhHHHHHHHhh
Q psy13909 118 GVPAKQFRTICSSVD 132 (328)
Q Consensus 118 Gi~~~~~~~i~~~id 132 (328)
||++++...|.+++.
T Consensus 106 g~~~~~~~~i~~~~~ 120 (529)
T PRK06253 106 GISDEKIEQIEEILG 120 (529)
T ss_pred CcCHHHHHHHHHHhC
Confidence 445567777776654
No 162
>KOG4509|consensus
Probab=23.54 E-value=1.1e+02 Score=27.27 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=23.5
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCCc-----------eEEEccCC----ccCCccc
Q psy13909 186 KSALVGLAAIKLLLSYCDIYELTD-----------KVIFDLSL----ARGLDYY 224 (328)
Q Consensus 186 ~~~~e~l~~L~~l~~~L~~~gi~~-----------~i~fDlsl----~RgldYY 224 (328)
..+.+.-.+++++-+.|..-|+-- .|.||-+. .|||||+
T Consensus 163 ~E~~knq~~~eEieeSL~~~GVl~eVefSssIHDREI~FdNGWmiK~GRGLDYF 216 (247)
T KOG4509|consen 163 EEARKNQAEFEEIEESLAKHGVLFEVEFSSSIHDREIIFDNGWMIKIGRGLDYF 216 (247)
T ss_pred HHHHHhhhhHHHHHHHHHhcceEEEEEecccccceeEEecCceEEEecCccccc
Confidence 344444567777888888877632 35555553 2666664
No 163
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=23.32 E-value=4.1e+02 Score=27.42 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=52.8
Q ss_pred HHHHHHHH-HHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccch-hhhhhcCCCCCCCCee
Q psy13909 192 LAAIKLLL-SYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYD-KLVGMFDPRQRNVPCV 269 (328)
Q Consensus 192 l~~L~~l~-~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD-~Lv~~f~~~g~~vPav 269 (328)
+.+|..++ ..++.+|+ .++.|-|+. .=||-.-+|++..-... | .=--|++.|=.. +++...|-+ .+.++.
T Consensus 394 ~~~L~~~l~~f~~~lG~-~~~RfrP~y----fPfTEPS~Ev~v~~~~~-g-kWIEIgg~Gm~rpevL~~~Gi~-~~~~~~ 465 (494)
T PTZ00326 394 LGDLIGTIREFFRRIGI-TKLRFKPAF----NPYTEPSMEIFGYHPGL-K-KWVEVGNSGIFRPEMLRPMGFP-EDVTVI 465 (494)
T ss_pred HHHHHHHHHHHHHhcCC-CceEEecCC----CCCCCCeeEEEEEecCC-C-cEEEEeCcCccCHHHHHhcCCC-CcceEE
Confidence 44555433 44566777 366676664 35787777776543210 0 012577888888 888877632 457799
Q ss_pred EEeeeHHHHHHHH
Q psy13909 270 GISIGVERIFSLI 282 (328)
Q Consensus 270 GfsiglerL~~~l 282 (328)
.|++|+||+..+.
T Consensus 466 A~GlGleRlaMi~ 478 (494)
T PTZ00326 466 AWGLSLERPTMIK 478 (494)
T ss_pred EEEecHHHHHHHH
Confidence 9999999997664
No 164
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=23.30 E-value=3.5e+02 Score=23.24 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCccccccccccccccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccch
Q psy13909 26 PNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDT 105 (328)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~Idt 105 (328)
++...+++|...|.+++.... ..-.++-+.+..++...|-..|.|
T Consensus 54 a~~e~~k~E~krL~~rkk~~e-----------------------------------~~~~~Lk~yL~~~m~~~g~~ki~t 98 (162)
T PF05565_consen 54 ADIEAIKAEIKRLQERKKSIE-----------------------------------NRIDRLKEYLLDAMEAAGIKKIKT 98 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHcCCceeec
Confidence 566677777777777666553 122456667888999999999999
Q ss_pred HHH
Q psy13909 106 PVC 108 (328)
Q Consensus 106 Pvf 108 (328)
|.|
T Consensus 99 ~~~ 101 (162)
T PF05565_consen 99 PLF 101 (162)
T ss_pred Cce
Confidence 988
No 165
>PLN00190 60S ribosomal protein L21; Provisional
Probab=23.04 E-value=1.2e+02 Score=26.30 Aligned_cols=48 Identities=27% Similarity=0.578 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCce--EEEccCCccCCc--cc---cceEEEEEEcCCccCCccccc-cc--cCccc
Q psy13909 198 LLSYCDIYELTDK--VIFDLSLARGLD--YY---TGIIYEAVLIGDRKKGESVGS-VA--GGGRY 252 (328)
Q Consensus 198 l~~~L~~~gi~~~--i~fDlsl~Rgld--YY---TGiIFE~~~~~~~~~~~~~~s-Ia--~GGRY 252 (328)
|..||..|.+.+. |..|++.-.|+- || ||.||.+.-. +++. |- -||||
T Consensus 27 ls~~l~~yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~~-------A~gV~V~K~vggr~ 84 (158)
T PLN00190 27 LTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKR-------AVGVEVNKQVGNRI 84 (158)
T ss_pred HHHHHHHhcCCCEEEEEecCCeecCCCcccccCCCeEEEeecCc-------EEEEEEEEeeCCeE
Confidence 4557777877654 667899988874 34 6778765433 3443 33 68886
No 166
>PF07775 PaRep2b: PaRep2b protein; InterPro: IPR011689 This is a group of proteins, expressed in the crenarchaeon Pyrobaculum aerophilum, whose members are variable in length and level of conservation. The presence of numerous frameshifts and internal stop codons in multiple alignments are thought to indicate that most family members are no longer functional [].
Probab=22.80 E-value=1.1e+02 Score=31.43 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=25.9
Q ss_pred ccccCccchhhhhhcCCCCCCC---CeeEEeeeHHH
Q psy13909 245 SVAGGGRYDKLVGMFDPRQRNV---PCVGISIGVER 277 (328)
Q Consensus 245 sIa~GGRYD~Lv~~f~~~g~~v---PavGfsigler 277 (328)
-+.++.|||.|+..+.. |+++ .+|.||+..++
T Consensus 174 G~I~~~~~~~L~~~iea-GPN~ve~AgVefSV~~~k 208 (512)
T PF07775_consen 174 GVISEEQYERLLKKIEA-GPNVVEIAGVEFSVRYEK 208 (512)
T ss_pred ccccHHHHHHHHHHHhc-CCCCCcccccEEEEEEcc
Confidence 47899999999999974 4555 49999998763
No 167
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=22.60 E-value=5.1e+02 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=20.2
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCc
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQ 101 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~ 101 (328)
..+.|-|.|.+.+...-..| ..++..||.
T Consensus 32 r~~~gyR~Y~~~dl~rL~~I-----~~lr~~G~s 60 (172)
T cd04790 32 RSESNYRLYGERDLERLEQI-----CAYRSAGVS 60 (172)
T ss_pred cCCCCCccCCHHHHHHHHHH-----HHHHHcCCC
Confidence 35789999998877665433 446777766
No 168
>PRK15008 HTH-type transcriptional regulator RutR; Provisional
Probab=22.58 E-value=3.1e+02 Score=23.99 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 82 VLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 82 ~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
..|+.|++...++|.++||..+.+ +.|-+.+||+.
T Consensus 18 ~~r~~IL~AA~~lf~e~Gy~~~s~-----~dIA~~aGvs~ 52 (212)
T PRK15008 18 AKKKAILSAALDTFSQFGFHGTRL-----EQIAELAGVSK 52 (212)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHhCcCH
Confidence 679999999999999999998765 56666677754
No 169
>PRK11640 putative transcriptional regulator; Provisional
Probab=22.02 E-value=4e+02 Score=23.13 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 83 LRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 83 ~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.|++|++...+.|.++||.-.. ++.|.+.+||+.
T Consensus 2 ~r~~il~~A~~lf~~~Gy~~ts-----i~~I~~~aGv~k 35 (191)
T PRK11640 2 QREDVLGEALKLLEQQGLANTT-----LEMLAERVDYPL 35 (191)
T ss_pred hHHHHHHHHHHHHHHhCcccCC-----HHHHHHHhCcCH
Confidence 4789999999999999998765 477788888875
No 170
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=22.01 E-value=1.2e+02 Score=27.95 Aligned_cols=63 Identities=21% Similarity=0.522 Sum_probs=44.7
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChhh---HHHHHHHhhhhCccChH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQ---FRTICSSVDKLDKWSWE 140 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~~---~~~i~~~idkldk~~~~ 140 (328)
.|-+..+|.|++-+.|+.|++......+.+-.+. .+++ ++.+|++.+. ++.|...+.+. ++|.
T Consensus 4 ~~~~~~~YT~~e~~~W~~l~~r~~~~~~~~Ac~~------yl~g-l~~L~l~~d~IPql~~vn~~L~~~--TGw~ 69 (228)
T cd03348 4 DEQGQIDYTPEEHAVWRTLYERQAKLLPGRACDA------FLEG-LEKLGLPTDRIPDFADVSERLKAA--TGWT 69 (228)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHhhcccCHH------HHHH-HHHcCCCCCCCCCHHHHHHHHHhc--cCCE
Confidence 4678899999999999999999999998887555 3443 4556665543 45555555432 4663
No 171
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=1.3e+02 Score=24.07 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCc--eEEEccCCccCCc--c---ccceEEE
Q psy13909 198 LLSYCDIYELTD--KVIFDLSLARGLD--Y---YTGIIYE 230 (328)
Q Consensus 198 l~~~L~~~gi~~--~i~fDlsl~Rgld--Y---YTGiIFE 230 (328)
+-.+|+.|.+.+ .|.+|||.-.|+- | +||+|+-
T Consensus 26 lsr~l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg 65 (98)
T COG2139 26 LSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVG 65 (98)
T ss_pred hhhHHhhccCCCEEEEEeCcccccCCCCccccCcceEEEe
Confidence 455777887765 4778999987753 3 4666653
No 172
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=21.52 E-value=1.9e+02 Score=19.57 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCcccchHHH--HHHHHHHHcCCCh-hhHHHHHHHhhh
Q psy13909 89 EQIISVFKRHGAQTIDTPVC--LLDGLFESCGVPA-KQFRTICSSVDK 133 (328)
Q Consensus 89 ~~i~~~f~~~G~~~IdtPvf--il~~il~~~Gi~~-~~~~~i~~~idk 133 (328)
......|+.+|+ +-..+ +-+.-+..+||+. ..+..+...+++
T Consensus 17 ~~y~~~f~~~~i---~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~ 61 (63)
T cd00166 17 GQYADNFRENGI---DGDLLLLLTEEDLKELGITLPGHRKKILKAIQK 61 (63)
T ss_pred HHHHHHHHHcCC---CHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456677777775 22333 3344456777765 455555555543
No 173
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=20.99 E-value=3.6e+02 Score=24.61 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCChhhHHHHHHHh
Q psy13909 109 LLDGLFESCGVPAKQFRTICSSV 131 (328)
Q Consensus 109 il~~il~~~Gi~~~~~~~i~~~i 131 (328)
|++++...+|.++++.+.....+
T Consensus 76 IF~Alc~a~~~dp~~~r~dA~~l 98 (214)
T TIGR03060 76 LFDALCNSNGFDPEQLREDAKQL 98 (214)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Confidence 66677777777666665554443
No 174
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=20.94 E-value=1.3e+02 Score=28.11 Aligned_cols=63 Identities=21% Similarity=0.472 Sum_probs=45.4
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChhh---HHHHHHHhhhhCccChH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQ---FRTICSSVDKLDKWSWE 140 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~~---~~~i~~~idkldk~~~~ 140 (328)
.|-|..+|.+.+-+.|+.|.+......+.+-.+. .+++ ++.+|++.+. ++.|...+.+ .++|.
T Consensus 4 ~~q~~~~YT~~e~~~W~~l~~r~~~~~~~~Ac~~------yl~g-l~~lgl~~d~IPql~~vn~~L~~--~TGw~ 69 (248)
T TIGR01267 4 DDQGFDHYSEEEHAVWNTLITRQLKLIEGRACQE------YLDG-IEQLGLPHDRIPDFDEINRKLQA--TTGWR 69 (248)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHhhccccHH------HHHH-HHHcCCCCCCCCCHHHHHHHHHh--ccCCE
Confidence 4678899999999999999999999999887665 3443 4556776543 4455555543 34663
No 175
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=20.88 E-value=1.6e+02 Score=24.22 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=25.5
Q ss_pred CCCcceEEEEeCC---chhHHHHHHHHHHHHHCCCcc
Q psy13909 294 RTTEVQVYVASAQ---KNLLEERMRICSYLWKNGINA 327 (328)
Q Consensus 294 ~~~~~~VlV~s~~---~~~l~e~l~l~~~Lw~~GI~a 327 (328)
.-.+.+|.|++.. ......+-++.++|+++||++
T Consensus 24 ~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v 60 (128)
T cd02426 24 CLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSV 60 (128)
T ss_pred CCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEE
Confidence 3467889988773 234566788999999999875
No 176
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=20.54 E-value=51 Score=34.06 Aligned_cols=47 Identities=19% Similarity=0.385 Sum_probs=38.1
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHH--HhcCCcccchHHHHHHHHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVF--KRHGAQTIDTPVCLLDGLFE 115 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f--~~~G~~~IdtPvfil~~il~ 115 (328)
-..|+-||+|--..+++.|.+...+.| .+-+...||+|++.-..++.
T Consensus 28 g~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~ 76 (539)
T PRK14894 28 GLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWK 76 (539)
T ss_pred CcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHee
Confidence 357999999999999999999999998 46677789999983333333
No 177
>KOG0554|consensus
Probab=20.36 E-value=62 Score=32.34 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=17.9
Q ss_pred CCCeeEEeeeHHHHHHHHHH
Q psy13909 265 NVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~ 284 (328)
.+|-.||++|.||++..+.-
T Consensus 408 ~vphgGFGlGfER~lq~~tG 427 (446)
T KOG0554|consen 408 SVPHGGFGLGFERMLQYLTG 427 (446)
T ss_pred CCCCCcccccHHHHHHHHhC
Confidence 68999999999999988764
No 178
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.29 E-value=4.4e+02 Score=22.02 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=27.5
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchH
Q psy13909 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTP 106 (328)
Q Consensus 70 pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtP 106 (328)
+.......+.+-..|.+-...+.+|++..|| .|-+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~R~~L~~~l~Ei~y-li~~~ 132 (134)
T PF08232_consen 97 SDEESSSPEIDESKWKKSRQLLRKYLQEIGY-LILDP 132 (134)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 3444555566778899999999999999999 66655
No 179
>TIGR03384 betaine_BetI transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme.
Probab=20.21 E-value=5.2e+02 Score=21.58 Aligned_cols=37 Identities=14% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
-..|++|++...++|.++||.... ++.|-+.+|++..
T Consensus 7 ~~rr~~Il~aA~~lf~~~G~~~~s-----~~~IA~~agvsk~ 43 (189)
T TIGR03384 7 PIRRAELIDATIESIGERGSLDVT-----IAQIARRAGVSSG 43 (189)
T ss_pred hHHHHHHHHHHHHHHHhcCcccCC-----HHHHHHHhCCCHH
Confidence 368899999999999999999765 4777778888753
No 180
>KOG2525|consensus
Probab=20.18 E-value=83 Score=32.23 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEE-
Q psy13909 193 AAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGI- 271 (328)
Q Consensus 193 ~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGf- 271 (328)
+.+..+++.++..-.. +.++.-.+.+-|++-|.+|....=+ -.+--++-|||||. ...+ .+.-+||+
T Consensus 130 ~~f~~v~~~lk~~~~~-----~~~~p~yF~fLT~lAF~~F~~enVd--vaViEvGlGG~~Da-TNvI----~kpvvcgIT 197 (496)
T KOG2525|consen 130 KYFWEVYERLKSTKLK-----EVSMPTYFEFLTLLAFHVFVKENVD--VAVIEVGLGGELDA-TNVI----EKPVVCGIT 197 (496)
T ss_pred HHHHHHHHHHHHhhcc-----ccCCCchhhhhHhhhheeeeecCCc--EEEEEecccccccc-cccc----ccceEEEEe
Confidence 4556677777654332 5566667788899999998864100 02235889999994 1111 12336666
Q ss_pred eeeHHHHH
Q psy13909 272 SIGVERIF 279 (328)
Q Consensus 272 siglerL~ 279 (328)
++|+|-..
T Consensus 198 slG~DH~~ 205 (496)
T KOG2525|consen 198 SLGLDHTS 205 (496)
T ss_pred ecCCchHH
Confidence 57877643
Done!