Query psy13909
Match_columns 328
No_of_seqs 298 out of 1627
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:34:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g85_A Histidine-tRNA ligase, 100.0 8.6E-60 2.9E-64 476.1 26.2 314 3-328 15-450 (517)
2 4g84_A Histidine--tRNA ligase, 100.0 5.3E-51 1.8E-55 405.7 25.6 269 60-328 7-397 (464)
3 3lc0_A Histidyl-tRNA synthetas 100.0 7.9E-49 2.7E-53 390.4 24.8 245 64-328 26-392 (456)
4 3od1_A ATP phosphoribosyltrans 100.0 1.5E-48 5.3E-53 382.5 21.7 242 64-328 7-366 (400)
5 3net_A Histidyl-tRNA synthetas 100.0 2.9E-46 1E-50 373.0 23.1 256 61-328 6-402 (465)
6 3rac_A Histidine-tRNA ligase; 100.0 2.1E-41 7.1E-46 329.2 17.1 202 67-286 23-367 (373)
7 1z7m_A ATP phosphoribosyltrans 100.0 1.7E-40 5.8E-45 319.6 16.7 206 61-286 16-338 (344)
8 1wu7_A Histidyl-tRNA synthetas 100.0 3E-39 1E-43 319.3 23.7 242 64-328 3-363 (434)
9 4e51_A Histidine--tRNA ligase; 100.0 8.6E-39 3E-43 319.2 15.0 129 188-328 257-385 (467)
10 1h4v_B Histidyl-tRNA synthetas 100.0 9.3E-36 3.2E-40 292.9 19.9 247 66-328 2-358 (421)
11 1htt_A Histidyl-tRNA synthetas 100.0 1.8E-36 6.2E-41 298.1 11.0 129 189-328 230-360 (423)
12 1qe0_A Histidyl-tRNA synthetas 100.0 3E-33 1E-37 274.7 11.2 131 189-328 229-360 (420)
13 1usy_A ATP phosphoribosyltrans 99.9 6E-28 2E-32 225.5 7.7 176 72-278 94-273 (275)
14 2j3l_A Prolyl-tRNA synthetase; 99.7 1.5E-18 5.1E-23 176.8 4.0 129 193-328 320-504 (572)
15 1evl_A Threonyl-tRNA synthetas 99.6 3.3E-16 1.1E-20 152.9 9.7 113 198-328 200-329 (401)
16 2i4l_A Proline-tRNA ligase; al 99.6 1.5E-16 5E-21 158.2 5.3 102 210-328 290-399 (458)
17 2zt5_A Glycyl-tRNA synthetase; 99.4 4.5E-13 1.5E-17 139.1 11.2 104 4-108 11-129 (693)
18 1x59_A Histidyl-tRNA synthetas 99.3 2.4E-12 8.2E-17 96.4 6.6 62 3-76 11-72 (73)
19 1hc7_A Prolyl-tRNA synthetase; 99.3 1E-11 3.4E-16 124.0 9.3 104 211-328 212-323 (477)
20 1qf6_A THRRS, threonyl-tRNA sy 99.2 2.3E-11 8E-16 125.4 9.2 64 264-328 504-570 (642)
21 3a32_A Probable threonyl-tRNA 99.1 1E-12 3.5E-17 130.9 -5.2 42 67-108 35-76 (471)
22 1nyr_A Threonyl-tRNA synthetas 99.1 1.4E-10 4.7E-15 119.8 8.8 122 197-328 446-577 (645)
23 1nj8_A Proline-tRNA synthetase 99.0 4.7E-10 1.6E-14 111.4 7.0 103 211-328 207-317 (459)
24 1nj1_A PROR, proline-tRNA synt 98.9 2.3E-09 7.7E-14 107.6 7.4 230 69-328 59-350 (501)
25 3uh0_A Threonyl-tRNA synthetas 98.7 7.7E-08 2.6E-12 95.5 13.6 114 197-323 246-374 (460)
26 1d2d_A TRNA synthetase, tRNA l 98.0 6.6E-06 2.3E-10 58.6 5.3 45 7-52 3-47 (59)
27 1fyj_A Multifunctional aminoac 97.8 4E-05 1.4E-09 54.2 5.9 45 4-49 3-47 (57)
28 1ati_A Glycyl-tRNA synthetase; 97.6 6.4E-05 2.2E-09 75.3 6.8 40 69-108 27-68 (505)
29 2djv_A Methionyl-tRNA syntheta 97.6 0.00012 4.2E-09 55.1 6.5 46 4-50 16-61 (79)
30 1nnh_A Asparaginyl-tRNA synthe 97.4 5.5E-05 1.9E-09 70.7 2.9 71 214-285 198-275 (294)
31 1r6t_A Tryptophanyl-tRNA synth 95.6 0.021 7.2E-07 56.6 7.2 47 3-50 9-55 (477)
32 3ial_A Prolyl-tRNA synthetase; 95.5 0.0046 1.6E-07 62.0 2.3 46 69-114 43-88 (518)
33 4hvc_A Bifunctional glutamate/ 95.3 0.0059 2E-07 61.2 2.2 49 68-116 48-96 (519)
34 2dq3_A Seryl-tRNA synthetase; 95.0 0.0054 1.9E-07 60.0 1.0 49 70-118 161-209 (425)
35 1ses_A Seryl-tRNA synthetase; 94.7 0.06 2E-06 52.5 7.5 48 71-118 156-203 (421)
36 1ati_A Glycyl-tRNA synthetase; 94.7 0.0068 2.3E-07 60.6 0.6 63 266-328 354-433 (505)
37 1g5h_A Mitochondrial DNA polym 94.4 0.075 2.6E-06 52.3 7.4 38 71-108 51-91 (454)
38 2dq0_A Seryl-tRNA synthetase; 93.3 0.021 7.1E-07 56.3 1.1 49 71-119 183-231 (455)
39 2cja_A Seryl-tRNA synthetase; 91.8 0.05 1.7E-06 54.5 1.6 54 65-118 214-269 (522)
40 4hvc_A Bifunctional glutamate/ 90.1 0.34 1.2E-05 48.4 5.7 60 268-328 277-349 (519)
41 3ikl_A DNA polymerase subunit 86.1 1.1 3.8E-05 44.0 6.4 34 74-107 97-132 (459)
42 1x54_A Asparaginyl-tRNA synthe 85.6 0.86 3E-05 44.4 5.3 29 80-108 134-162 (434)
43 1nnh_A Asparaginyl-tRNA synthe 83.7 0.41 1.4E-05 44.2 2.0 32 77-108 11-42 (294)
44 1wyd_A Hypothetical aspartyl-t 83.5 1.2 4E-05 43.4 5.2 29 80-108 133-161 (429)
45 1usy_A ATP phosphoribosyltrans 80.4 0.41 1.4E-05 43.6 0.6 23 86-108 5-29 (275)
46 3m4p_A Ehasnrs, asparaginyl-tR 79.9 1.5 5.2E-05 43.0 4.5 28 81-108 156-183 (456)
47 3err_A Fusion protein of micro 77.4 5.1 0.00017 40.1 7.5 49 71-119 265-313 (536)
48 1n9w_A Aspartyl-tRNA synthetas 74.0 1.7 5.7E-05 42.3 2.9 30 79-108 123-152 (422)
49 1wle_A Seryl-tRNA synthetase; 72.1 1.1 3.7E-05 44.6 1.1 48 71-118 209-256 (501)
50 3vbb_A Seryl-tRNA synthetase, 69.6 1.3 4.3E-05 44.3 0.9 48 71-118 191-238 (522)
51 1wyd_A Hypothetical aspartyl-t 66.8 2 6.7E-05 41.8 1.6 34 250-285 378-411 (429)
52 1x54_A Asparaginyl-tRNA synthe 66.0 2.1 7.1E-05 41.7 1.6 33 250-284 383-415 (434)
53 3qne_A Seryl-tRNA synthetase, 65.6 1.9 6.5E-05 42.6 1.2 47 72-118 176-222 (485)
54 1eov_A ASPRS, aspartyl-tRNA sy 65.5 2.1 7.3E-05 42.3 1.6 29 80-108 177-205 (487)
55 3a5y_A GENX, putative lysyl-tR 64.6 2.3 7.9E-05 40.1 1.6 30 79-108 34-63 (345)
56 3a5y_A GENX, putative lysyl-tR 63.8 4.8 0.00016 37.9 3.6 33 251-285 298-331 (345)
57 3ial_A Prolyl-tRNA synthetase; 63.3 7.6 0.00026 38.7 5.1 53 276-328 275-341 (518)
58 3a74_A Lysyl-tRNA synthetase; 62.6 2.6 8.9E-05 41.7 1.6 29 80-108 173-201 (493)
59 1g5h_A Mitochondrial DNA polym 62.4 1.8 6.3E-05 42.3 0.4 63 265-327 289-371 (454)
60 3lss_A Seryl-tRNA synthetase; 60.3 2.2 7.6E-05 42.2 0.6 49 71-119 198-246 (484)
61 3qtc_A Pyrrolysyl-tRNA synthet 57.6 2.6 9E-05 38.4 0.6 38 84-121 79-116 (290)
62 1e1o_A Lysyl-tRNA synthetase, 55.6 3.8 0.00013 40.6 1.4 29 80-108 182-210 (504)
63 2xgt_A Asparaginyl-tRNA synthe 54.7 4.3 0.00015 39.4 1.6 29 80-108 131-159 (435)
64 1n9w_A Aspartyl-tRNA synthetas 53.0 9.8 0.00033 36.8 3.8 32 252-285 373-404 (422)
65 3dsq_A Pyrrolysyl-tRNA synthet 52.6 3.7 0.00012 37.6 0.7 38 84-121 73-110 (288)
66 1c0a_A Aspartyl tRNA synthetas 51.6 9.7 0.00033 38.4 3.7 28 81-108 138-165 (585)
67 3nem_A Aspartyl-tRNA synthetas 51.6 11 0.00039 36.5 4.0 28 81-108 137-164 (438)
68 3dsq_A Pyrrolysyl-tRNA synthet 51.4 42 0.0014 30.4 7.7 37 244-284 228-266 (288)
69 3nem_A Aspartyl-tRNA synthetas 50.3 5.6 0.00019 38.7 1.6 31 252-284 389-419 (438)
70 1l0w_A Aspartyl-tRNA synthetas 50.1 11 0.00036 38.1 3.6 28 81-108 144-171 (580)
71 1eov_A ASPRS, aspartyl-tRNA sy 49.9 12 0.00041 36.9 3.9 32 251-284 437-468 (487)
72 3i7f_A Aspartyl-tRNA synthetas 49.6 12 0.00043 37.4 4.0 28 81-108 244-271 (548)
73 3qkx_A Uncharacterized HTH-typ 48.7 85 0.0029 24.5 8.5 39 79-122 5-43 (188)
74 3m4p_A Ehasnrs, asparaginyl-tR 47.7 6.5 0.00022 38.5 1.6 50 228-284 369-437 (456)
75 3bqz_B HTH-type transcriptiona 47.4 49 0.0017 26.2 6.9 37 81-122 1-37 (194)
76 3bju_A Lysyl-tRNA synthetase; 45.3 15 0.00053 36.4 3.9 29 80-108 175-203 (521)
77 3qbm_A TETR transcriptional re 44.5 98 0.0033 24.4 8.3 39 78-121 3-41 (199)
78 1c0a_A Aspartyl tRNA synthetas 43.1 8.9 0.0003 38.7 1.8 32 252-285 514-545 (585)
79 1l0w_A Aspartyl-tRNA synthetas 43.0 9 0.00031 38.7 1.8 32 252-285 508-539 (580)
80 2ras_A Transcriptional regulat 42.5 77 0.0026 25.6 7.5 39 78-121 7-45 (212)
81 1e1o_A Lysyl-tRNA synthetase, 42.0 14 0.00047 36.6 2.9 20 266-285 469-488 (504)
82 3a74_A Lysyl-tRNA synthetase; 41.9 14 0.00047 36.5 2.9 21 265-285 458-478 (493)
83 3bju_A Lysyl-tRNA synthetase; 41.6 9.1 0.00031 38.1 1.6 30 253-284 463-492 (521)
84 4ex5_A Lysine--tRNA ligase; st 41.3 9.3 0.00032 38.1 1.6 28 81-108 204-231 (529)
85 3i7f_A Aspartyl-tRNA synthetas 41.1 9.7 0.00033 38.2 1.7 31 252-284 499-529 (548)
86 3idw_A Actin cytoskeleton-regu 40.5 51 0.0017 23.8 5.0 52 112-163 7-60 (72)
87 4a5z_A MITD1, MIT domain-conta 40.1 22 0.00076 29.8 3.5 27 189-215 84-110 (163)
88 2xgt_A Asparaginyl-tRNA synthe 39.8 16 0.00055 35.3 3.0 21 265-285 397-417 (435)
89 3him_A Probable transcriptiona 39.3 1.2E+02 0.0041 24.1 8.1 37 80-121 14-50 (211)
90 4ex5_A Lysine--tRNA ligase; st 38.5 17 0.00059 36.2 3.0 20 265-284 493-512 (529)
91 2ymb_A MITD1, MIT domain-conta 37.9 24 0.00082 31.8 3.6 26 191-216 174-199 (257)
92 2qko_A Possible transcriptiona 37.3 41 0.0014 27.6 4.9 39 78-121 24-62 (215)
93 3anp_C Transcriptional repress 36.9 1.1E+02 0.0036 24.7 7.4 37 80-121 7-43 (204)
94 3ccy_A Putative TETR-family tr 36.8 1.2E+02 0.0043 24.2 7.9 36 81-121 13-48 (203)
95 3dcf_A Transcriptional regulat 35.6 1.4E+02 0.0047 23.9 7.9 38 79-121 28-65 (218)
96 2g7s_A Transcriptional regulat 34.8 44 0.0015 26.4 4.6 39 78-121 4-42 (194)
97 3kz9_A SMCR; transcriptional r 34.0 1.7E+02 0.0059 23.0 8.7 38 79-121 14-51 (206)
98 3col_A Putative transcription 33.9 84 0.0029 24.7 6.2 37 80-121 8-44 (196)
99 2zb9_A Putative transcriptiona 31.9 71 0.0024 25.9 5.5 39 78-121 19-57 (214)
100 4ah6_A Aspartate--tRNA ligase, 30.7 30 0.001 35.1 3.3 28 81-108 148-176 (617)
101 3pas_A TETR family transcripti 30.5 90 0.0031 24.5 5.8 39 78-121 4-42 (195)
102 1vi0_A Transcriptional regulat 30.3 1.5E+02 0.0052 23.9 7.4 36 81-121 7-42 (206)
103 3bhq_A Transcriptional regulat 30.1 1.7E+02 0.0058 23.6 7.6 38 79-121 9-46 (211)
104 3f0c_A TETR-molecule A, transc 29.8 1.7E+02 0.0057 23.4 7.5 36 81-121 10-45 (216)
105 3on4_A Transcriptional regulat 29.7 1.7E+02 0.006 22.6 7.5 36 81-121 9-44 (191)
106 1b7y_A Phers, protein (phenyla 29.5 32 0.0011 32.3 3.1 38 84-121 103-141 (350)
107 2du3_A O-phosphoseryl-tRNA syn 29.4 1.1E+02 0.0039 30.3 7.2 88 192-283 243-338 (534)
108 3knw_A Putative transcriptiona 29.3 2E+02 0.0067 22.8 7.9 38 79-121 11-48 (212)
109 2f07_A YVDT; helix-turn-helix, 29.0 1.3E+02 0.0043 24.2 6.6 36 81-121 9-44 (197)
110 3he0_A Transcriptional regulat 29.0 1.5E+02 0.0053 23.2 7.1 36 81-121 10-45 (196)
111 3ppb_A Putative TETR family tr 28.9 1.9E+02 0.0064 22.5 7.5 37 81-122 8-44 (195)
112 2ibd_A Possible transcriptiona 28.6 1.8E+02 0.0063 23.2 7.6 36 81-121 13-48 (204)
113 2eh3_A Transcriptional regulat 27.8 52 0.0018 26.1 3.8 36 81-121 1-36 (179)
114 2nx4_A Transcriptional regulat 27.3 2.3E+02 0.008 22.4 8.1 36 81-121 9-44 (194)
115 3s5r_A Transcriptional regulat 27.2 2.2E+02 0.0075 22.6 7.8 37 80-121 8-44 (216)
116 3aqt_A Bacterial regulatory pr 26.8 2E+02 0.0067 24.0 7.7 39 78-121 42-80 (245)
117 1sgm_A Putative HTH-type trans 26.6 44 0.0015 26.4 3.2 39 79-122 3-41 (191)
118 4ah6_A Aspartate--tRNA ligase, 26.5 23 0.0008 35.9 1.7 18 266-283 537-554 (617)
119 2fq4_A Transcriptional regulat 26.4 70 0.0024 25.6 4.5 38 79-121 9-46 (192)
120 3f1b_A TETR-like transcription 25.5 2.4E+02 0.0083 22.0 8.2 36 81-121 13-48 (203)
121 3mvp_A TETR/ACRR transcription 25.5 1.3E+02 0.0044 24.1 6.0 39 78-121 22-60 (217)
122 3ikl_A DNA polymerase subunit 25.0 34 0.0012 33.4 2.5 64 265-328 299-382 (459)
123 3b81_A Transcriptional regulat 24.8 87 0.003 24.9 4.7 38 79-121 8-45 (203)
124 3q0w_A HTH-type transcriptiona 24.0 1.3E+02 0.0045 24.9 5.9 40 77-121 39-78 (236)
125 3g1o_A Transcriptional regulat 23.4 1.5E+02 0.0051 24.9 6.2 39 78-121 39-77 (255)
126 3g7r_A Putative transcriptiona 22.9 2.4E+02 0.0082 22.9 7.3 37 80-121 33-69 (221)
127 3vib_A MTRR; helix-turn-helix 22.7 92 0.0032 25.2 4.6 37 80-121 8-44 (210)
128 1b7y_A Phers, protein (phenyla 22.6 3.1E+02 0.011 25.4 8.6 84 193-282 231-326 (350)
129 3bru_A Regulatory protein, TET 22.4 3E+02 0.01 21.9 8.1 37 80-121 28-64 (222)
130 2y1q_A CLPC N-domain, negative 22.0 2E+02 0.007 22.3 6.4 51 84-134 10-71 (150)
131 3mva_O Transcription terminati 21.9 2.4E+02 0.0082 25.7 7.7 93 113-210 25-138 (343)
132 3pco_A Phenylalanyl-tRNA synth 21.8 50 0.0017 30.7 2.9 59 63-123 90-149 (327)
133 3dpj_A Transcription regulator 21.7 2.9E+02 0.0098 21.5 7.5 38 79-121 5-42 (194)
134 2iu5_A DHAS, YCEG, HTH-type dh 21.7 1.1E+02 0.0039 24.3 4.9 39 78-121 9-47 (195)
135 3bq7_A Diacylglycerol kinase d 21.5 1.1E+02 0.0037 21.9 4.2 63 69-134 3-70 (81)
136 3cwr_A Transcriptional regulat 21.4 93 0.0032 24.7 4.2 36 81-121 16-51 (208)
137 2gfn_A HTH-type transcriptiona 21.3 3.1E+02 0.011 22.1 7.7 36 81-121 8-43 (209)
138 2qtq_A Transcriptional regulat 21.2 1.6E+02 0.0055 23.3 5.8 37 80-121 14-50 (213)
139 2id3_A Putative transcriptiona 21.2 2.2E+02 0.0075 23.3 6.7 39 78-121 36-74 (225)
140 3lwj_A Putative TETR-family tr 21.1 1.1E+02 0.0038 24.2 4.7 38 79-121 9-46 (202)
141 2q24_A Putative TETR family tr 21.1 85 0.0029 25.1 3.9 36 81-122 14-49 (194)
142 1mlw_A Tryptophan 5-monooxygen 20.8 57 0.002 30.0 2.9 64 64-133 53-122 (301)
143 3lay_A Zinc resistance-associa 20.8 1.9E+02 0.0064 24.3 6.0 40 7-46 91-130 (175)
144 2i10_A Putative TETR transcrip 20.6 2.4E+02 0.0083 22.5 6.8 34 83-121 12-45 (202)
145 3gzi_A Transcriptional regulat 20.5 2.6E+02 0.0089 22.2 7.0 39 79-122 14-52 (218)
146 3kkc_A TETR family transcripti 20.5 94 0.0032 24.2 4.0 38 79-121 9-46 (177)
147 3dew_A Transcriptional regulat 20.4 1.7E+02 0.006 22.9 5.8 36 81-121 7-42 (206)
148 3mnl_A KSTR, transcriptional r 20.4 1.1E+02 0.0036 24.3 4.4 39 78-121 16-54 (203)
No 1
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=8.6e-60 Score=476.14 Aligned_cols=314 Identities=57% Similarity=0.921 Sum_probs=241.4
Q ss_pred hHHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCccccccccccccccceeCCCCCccCCchhHH
Q psy13909 3 RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMV 82 (328)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkGtrD~~p~~~~ 82 (328)
+..++++|+.|++.+++|| +.+++...|+|+|++|+++|++++ ++..++||.+++|+||+||+|.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~P~G~~D~lP~~~~ 82 (517)
T 4g85_A 15 RAALEELVKLQGERVRGLK-QQKASAELIEEEVAKLLKLKAQLG-----------PDESKQKFVLKTPKGTRDYSPRQMA 82 (517)
T ss_dssp -----------------------------------------------------------CCCCCCCCCTTCCCBCHHHHH
T ss_pred HHHHHHHHHHhhhhhcccc-cccCCHHHHHHHHHHHHHhhhhcC-----------CcccccceeeeCCCCCCccCHHHHH
Confidence 6788999999999999999 999999999999999999999997 6778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccchHHH------------------------------------------------------
Q psy13909 83 LRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------------------------ 108 (328)
Q Consensus 83 ~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------------------------ 108 (328)
+|++|+++++++|++|||++|+||+|
T Consensus 83 ~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~k~yy 162 (517)
T 4g85_A 83 VREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYH 162 (517)
T ss_dssp HHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHHhCCCCCceeEE
Confidence 99999999999999999999999997
Q ss_pred ----------------------------------------------------------------HHHHHHHHcCCChhhH
Q psy13909 109 ----------------------------------------------------------------LLDGLFESCGVPAKQF 124 (328)
Q Consensus 109 ----------------------------------------------------------------il~~il~~~Gi~~~~~ 124 (328)
+++++++.||++++.+
T Consensus 163 ig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~ 242 (517)
T 4g85_A 163 IAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKF 242 (517)
T ss_dssp EEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHH
T ss_pred EeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHhhcchHHHH
Confidence 7889999999999999
Q ss_pred HHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhhhHHhHHHHHHHHHHHHH
Q psy13909 125 RTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDI 204 (328)
Q Consensus 125 ~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e~l~~L~~l~~~L~~ 204 (328)
+.++.++|++|+.+|++++++++.+.+++++.+++|..++..+|+.+.++.+..++.+..+..+.+++++|+.++++|+.
T Consensus 243 ~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~ 322 (517)
T 4g85_A 243 RTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTL 322 (517)
T ss_dssp HHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888777777788889999999999999999
Q ss_pred cCCCceEEEccCCccCCccccceEEEEEEcCCccC-C---ccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHH
Q psy13909 205 YELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKK-G---ESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFS 280 (328)
Q Consensus 205 ~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~-~---~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~ 280 (328)
+|+..+|.|||+++||+|||||+|||++..+.+.+ + ...++||+|||||+|++.|+++|+++||||||+|+|||+.
T Consensus 323 ~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~~f~~~G~~~pavGfa~gierl~~ 402 (517)
T 4g85_A 323 FGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFS 402 (517)
T ss_dssp HTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHHTTSSSCCCCCEEEEEECHHHHHH
T ss_pred hCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHHHhccCCCCCCcccccchHHHHHH
Confidence 99999999999999999999999999998765411 0 1346899999999999999877899999999999999999
Q ss_pred HHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 281 LIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
+|++............+++|+|++.+++.+.++++++++||++||+||
T Consensus 403 ~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve 450 (517)
T 4g85_A 403 IVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 450 (517)
T ss_dssp HHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEE
Confidence 999875443234556789999999999889999999999999999985
No 2
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.3e-51 Score=405.73 Aligned_cols=269 Identities=61% Similarity=0.994 Sum_probs=239.7
Q ss_pred ccccccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-------------------------------
Q psy13909 60 YDQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC------------------------------- 108 (328)
Q Consensus 60 ~~~~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------- 108 (328)
+-+.+|.+++|+||+||+|.++..|++|++.++++|++|||++|.||+|
T Consensus 7 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LR 86 (464)
T 4g84_A 7 ELRRQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLR 86 (464)
T ss_dssp ------CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEEC
T ss_pred hHhhccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeC
Confidence 3467899999999999999999999999999999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 87 Pd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~ 166 (464)
T 4g84_A 87 YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFL 166 (464)
T ss_dssp SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred CcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCCCcc
Confidence
Q ss_pred -------HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhcccc
Q psy13909 109 -------LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDL 181 (328)
Q Consensus 109 -------il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~ 181 (328)
+++++++.||++++.++.++..+|++++.+|++++++++.+.+++++.+++|..++..+|+.+.++.+..++.
T Consensus 167 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 246 (464)
T 4g84_A 167 VKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPK 246 (464)
T ss_dssp EEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHHHHHTTCHH
T ss_pred eeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhccc
Confidence 7888999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred ccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCC----ccccccccCccchhhhh
Q psy13909 182 LKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKG----ESVGSVAGGGRYDKLVG 257 (328)
Q Consensus 182 l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~----~~~~sIa~GGRYD~Lv~ 257 (328)
+..+..+.+++++|+.++++|+.+|+..+|.|||+++||+|||||+|||++..+.+.+. ...++||+|||||+|++
T Consensus 247 ~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~L~~ 326 (464)
T 4g84_A 247 LSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVG 326 (464)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEECCSTGG
T ss_pred ccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccCCchhHHHH
Confidence 77788889999999999999999999999999999999999999999999987643110 12358999999999999
Q ss_pred hcCCCCCCCCeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 258 MFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 258 ~f~~~g~~vPavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
.|+++|+++||||||||+|||+.+|++......+.+...+++|+|++.++....++++++++||++||+||
T Consensus 327 ~~~~~g~~~pavGfaigieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve 397 (464)
T 4g84_A 327 MFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAE 397 (464)
T ss_dssp GTSTTCCCCCEEEEEECHHHHHHHHHHHHHTTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEE
T ss_pred HhccCCCCCCCccccccHHHHHHHHHHhccccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEE
Confidence 99877899999999999999999998876544334566788999999999889999999999999999985
No 3
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=7.9e-49 Score=390.43 Aligned_cols=245 Identities=26% Similarity=0.459 Sum_probs=212.8
Q ss_pred ccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-----------------------------------
Q psy13909 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC----------------------------------- 108 (328)
Q Consensus 64 ~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf----------------------------------- 108 (328)
-+.+++|+||+||+|.++.+|++|++.++++|++|||++|+||+|
T Consensus 26 m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~ 105 (456)
T 3lc0_A 26 MVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEM 105 (456)
T ss_dssp CCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCS
T ss_pred cccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcC
Confidence 356899999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 106 T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~~~~~i 185 (456)
T 3lc0_A 106 TPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGI 185 (456)
T ss_dssp HHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred HHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCCCceEE
Confidence
Q ss_pred ------HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccc
Q psy13909 109 ------LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLL 182 (328)
Q Consensus 109 ------il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l 182 (328)
+++++++.||+|++....++.++|++++.+|+++++++ .+++++++.+++|..++.+. ..+.+..+..
T Consensus 186 ~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L-~~~~l~~~~~~~l~~~~~~~-~~~~l~~~l~---- 259 (456)
T 3lc0_A 186 KVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQL-AVLGLEPTVVDAITTTLSLK-SIDEIAQRVG---- 259 (456)
T ss_dssp EEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHH-HHTTCCHHHHHHHHHHHTCC-SHHHHHHHHC----
T ss_pred EEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHH-HHcCCCHHHHHHHHHHhccC-CHHHHHHHHh----
Confidence 88899999999999999999999999999999998765 45899999999999988754 3333333321
Q ss_pred cchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCC
Q psy13909 183 KTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPR 262 (328)
Q Consensus 183 ~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~ 262 (328)
...+++++|+.++++|+.+|+.++++|||+++||+|||||+|||++.... ..++||+|||||+|++.||
T Consensus 260 ----~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g-----~~~~I~~GGRYD~Lv~~fg-- 328 (456)
T 3lc0_A 260 ----EEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREG-----KFRALCGGGRYDNLLTTYG-- 328 (456)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTS-----CSSCSEEEEECSSHHHHTT--
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCC-----CcceEeecccHHHHHHHhC--
Confidence 23457999999999999999988899999999999999999999997531 4579999999999999998
Q ss_pred CC-CCCeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 263 QR-NVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 263 g~-~vPavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|. ++||||||||+|||+.+|++....+ .....++|+|++.+++...+++++++.||++||+||
T Consensus 329 ~~~~~PavGFaig~eRl~~~l~~~~~~~---~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve 392 (456)
T 3lc0_A 329 SPTPIPCAGFGFGDCVIVELLQEKRLLP---DIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSAD 392 (456)
T ss_dssp CSSCCCEEEEEEESSHHHHHHHHTTCCC---CCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCCEEEEEeEHHHHHHHHHhcCCCC---ccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEE
Confidence 45 6999999999999999998754221 233468999999998888999999999999999985
No 4
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=1.5e-48 Score=382.52 Aligned_cols=242 Identities=20% Similarity=0.291 Sum_probs=212.3
Q ss_pred ccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-----------------------------------
Q psy13909 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC----------------------------------- 108 (328)
Q Consensus 64 ~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf----------------------------------- 108 (328)
+|.+++|+||+||+|+++.+|++|++.++++|++|||++|+||+|
T Consensus 7 ~~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T 86 (400)
T 3od1_A 7 PFMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMT 86 (400)
T ss_dssp CCTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSH
T ss_pred hhcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCH
Confidence 467899999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 87 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~~~~i~l~ 166 (400)
T 3od1_A 87 APIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLSEFKVAIG 166 (400)
T ss_dssp HHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCCceEEEec
Confidence
Q ss_pred ---HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccch
Q psy13909 109 ---LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTS 185 (328)
Q Consensus 109 ---il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~ 185 (328)
+++++++.||++++....++.+++++|+.+|+ +++++.+|+++++++|..++.+.|+.++++++. .+..+
T Consensus 167 ~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~----~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~---~l~~~ 239 (400)
T 3od1_A 167 HVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYR----EHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEAR---GLIQT 239 (400)
T ss_dssp EHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHH----HHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHH---TTCCS
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHH----HHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHH---hhhcC
Confidence 88999999999999999999999999988775 355667999999999999999999988888875 35556
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCC
Q psy13909 186 KSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRN 265 (328)
Q Consensus 186 ~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~ 265 (328)
..+.+++++|+.++++|+.+|+.++++|||+++||+|||||+|||++..+. ..+||+|||||+|++.|| .+
T Consensus 240 ~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~------g~~i~~GGRYD~L~~~fG---~~ 310 (400)
T 3od1_A 240 EKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRL------GVPLCSGGRYDELLSKFH---RP 310 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTC------SSEEEEEEECTTHHHHTT---CC
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECCC------CCeeecccccchhhhccC---CC
Confidence 778899999999999999999988899999999999999999999999863 259999999999999997 45
Q ss_pred CCeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 266 VPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 266 vPavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
+||||||||+|||+.+|++.... ...++|||+ .+++...++++++++||++|++|+
T Consensus 311 ~pavGfaiglerL~~~l~~~~~~------~~~~~v~v~-~~~~~~~~a~~~a~~LR~~G~~v~ 366 (400)
T 3od1_A 311 AQATGFGVRIDLLVEALNGEIIS------NGHEQTCIL-FSNERRFEAIELARKKRANGEAVV 366 (400)
T ss_dssp CCEEEEEEEHHHHHHHHCC------------CCCEEEE-ECGGGHHHHHHHHHHHHTTTCCEE
T ss_pred CCEEEEEeeHHHHHHHHHhcCCC------CCCCeEEEE-ECcHHHHHHHHHHHHHHHCCCEEE
Confidence 99999999999999998765421 112347776 556668899999999999999985
No 5
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=2.9e-46 Score=372.95 Aligned_cols=256 Identities=30% Similarity=0.526 Sum_probs=217.8
Q ss_pred cccccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH--------------------------------
Q psy13909 61 DQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC-------------------------------- 108 (328)
Q Consensus 61 ~~~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf-------------------------------- 108 (328)
++.++.+++|+||+||+|+++..|++|++.+.++|++|||++|+||+|
T Consensus 6 ~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~ 85 (465)
T 3net_A 6 KNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEK 85 (465)
T ss_dssp ---CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC--------
T ss_pred CCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEeccccccccccc
Confidence 356788999999999999999999999999999999999999999931
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi 165 (465)
T 3net_A 86 DKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMP 165 (465)
T ss_dssp --------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHH
T ss_pred ccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHH
Confidence
Q ss_pred -----------------------HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHh
Q psy13909 109 -----------------------LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQ 165 (328)
Q Consensus 109 -----------------------il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~ 165 (328)
+++++++.||++++....++.++|++|+.+|++++.++. +.+++++.++.+..++.
T Consensus 166 ~l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~-~~~l~~~~~~~l~~l~~ 244 (465)
T 3net_A 166 AIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELE-KEGINPEQTQKIIDFVK 244 (465)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHH-hcCCCHHHHHHHHHHHH
Confidence 899999999999988889999999999999999988764 68999999999999999
Q ss_pred ccCCH-HHHHHHhcc-ccccchhhhHHhHHHHHHHHHHHHHcCCCce----EEEccCCccCCccccceEEEEEEcCCccC
Q psy13909 166 QHGHK-ELVEKFMQD-DLLKTSKSALVGLAAIKLLLSYCDIYELTDK----VIFDLSLARGLDYYTGIIYEAVLIGDRKK 239 (328)
Q Consensus 166 l~g~~-~~l~~l~~~-~~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~----i~fDlsl~RgldYYTGiIFE~~~~~~~~~ 239 (328)
++|+. ++++++.+. +....++.+.+++++|+.++ |+.+ +..+ ++|||+++||+|||||+|||++..+.+
T Consensus 245 ~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~--l~~~-~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~-- 319 (465)
T 3net_A 245 IDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVI--TGVR-NLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHE-- 319 (465)
T ss_dssp CCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHHH-HTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTCG--
T ss_pred hcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHH--HHHh-cccccCceEEEccCccCCCcccCceEEEEEECCCC--
Confidence 99984 677777532 00145677889999999998 6666 5557 999999999999999999999998743
Q ss_pred CccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHH
Q psy13909 240 GESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSY 319 (328)
Q Consensus 240 ~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~ 319 (328)
..++||+|||||+|+++|. |.++||||||||+|||+.+|.+.+..+ .....+++|+|++.+++...++++++++
T Consensus 320 --~~~~i~~GGRYD~L~~~f~--g~~~pavGfaiGieRli~~L~e~g~~p--~~~~~p~~V~Vi~~~~~~~~~A~~la~~ 393 (465)
T 3net_A 320 --ALGSICSGGRYEELVGTFI--GEKMPGVGISIGLTRLISRLLKAGILN--TLPPTPAQVVVVNMQDELMPTYLKVSQQ 393 (465)
T ss_dssp --GGCCSSEEEEESSSSGGGT--CSCCCEEEEEEEHHHHHHHHHHTTSSC--CCCSCSCCEEECCSCGGGHHHHHHHHHH
T ss_pred --ccceecccccHHHHhhhhc--CCCCceeeeeccHHHHHHHHHHcCCCC--CcCCCCCeEEEEEcCHHHHHHHHHHHHH
Confidence 3579999999999999884 244999999999999999998764321 1134568999999988888999999999
Q ss_pred HHHCCCccC
Q psy13909 320 LWKNGINAD 328 (328)
Q Consensus 320 Lw~~GI~ae 328 (328)
||++||+|+
T Consensus 394 LR~~Gi~ve 402 (465)
T 3net_A 394 LRQAGLNVI 402 (465)
T ss_dssp HHHTTCCEE
T ss_pred HHHCCCEEE
Confidence 999999975
No 6
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=2.1e-41 Score=329.20 Aligned_cols=202 Identities=24% Similarity=0.362 Sum_probs=181.0
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH--------------------------------------
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC-------------------------------------- 108 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf-------------------------------------- 108 (328)
+++|+||+||+|.++..+++|++.++++|++|||++|+||+|
T Consensus 23 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~ 102 (373)
T 3rac_A 23 ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPS 102 (373)
T ss_dssp CCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHH
T ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHH
Confidence 688999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q psy13909 109 -------------------------------------------------------------------------------- 108 (328)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (328)
T Consensus 103 ~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~~~ 182 (373)
T 3rac_A 103 IARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVRHH 182 (373)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCCce
Confidence
Q ss_pred --------HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccC------------
Q psy13909 109 --------LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG------------ 168 (328)
Q Consensus 109 --------il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g------------ 168 (328)
+++++++.||++++.+..++.+++++|+.+|+++..++ +++++++|..++++.|
T Consensus 183 ~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~~~~l------~~~~~~~l~~l~~l~g~~~~~~~~~~~~ 256 (373)
T 3rac_A 183 RIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLH------AAKDVDLLANLLTWSPAERDAAKRSREA 256 (373)
T ss_dssp EEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHHHHHH------CSCCSCHHHHHHHBCCCSSCTTSBCHHH
T ss_pred EEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHHHHhc------CHHHHHHHHHHHHHhCCccccccccccc
Confidence 89999999999999999999999999999998776654 5566788999999988
Q ss_pred CHHHHHHHhccccccchhhh----HHhHHHHHHHHHHHHHcCC-CceEEEccCCccCCccccceEEEEEEcCCccCCccc
Q psy13909 169 HKELVEKFMQDDLLKTSKSA----LVGLAAIKLLLSYCDIYEL-TDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESV 243 (328)
Q Consensus 169 ~~~~l~~l~~~~~l~~~~~~----~e~l~~L~~l~~~L~~~gi-~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~ 243 (328)
..++++++. .+..+..+ .+++++|+.++++|+.+|+ .++++|||+++||+|||||+|||++..+. .
T Consensus 257 ~~~~l~~~~---~l~~~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldYYTG~vFe~~~~~~------g 327 (373)
T 3rac_A 257 SDRELEALL---RDAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFEMFAPGV------G 327 (373)
T ss_dssp HHHHHHHHH---TTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTTCCSEEEEEECTTC------S
T ss_pred cHHHHHHHH---hhhcCcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCCCCccCCeEEEEEECCC------C
Confidence 457777775 34444555 8899999999999999999 78899999999999999999999999863 2
Q ss_pred cccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHhh
Q psy13909 244 GSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKL 286 (328)
Q Consensus 244 ~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~~ 286 (328)
.+||+|||||+|++.|| .++||||||||+|||+.+|++.+
T Consensus 328 ~~i~~GGRYD~L~~~fG---~~~pAvGFaiglerL~~~l~~~~ 367 (373)
T 3rac_A 328 APIAQGGRYDELLAQFG---AGAPAVGFAFEVERVMAVLEAQE 367 (373)
T ss_dssp SCSEEEEECTTTTGGGT---CCCCCEEEEEEHHHHHHHHHHHH
T ss_pred CeEeecccccHHHHhhC---CCCCeEEEEEEHHHHHHHHHhcc
Confidence 59999999999999997 46999999999999999998764
No 7
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=1.7e-40 Score=319.63 Aligned_cols=206 Identities=16% Similarity=0.263 Sum_probs=173.9
Q ss_pred cccccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH--------------------------------
Q psy13909 61 DQVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC-------------------------------- 108 (328)
Q Consensus 61 ~~~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf-------------------------------- 108 (328)
.+.++.+++|+||+||+|.++..+++|++.++++|++|||++|+||+|
T Consensus 16 ~~~~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l 95 (344)
T 1z7m_A 16 RMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSI 95 (344)
T ss_dssp ------CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEE
T ss_pred hhhhccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEE
Confidence 356777999999999999999999999999999999999999999987
Q ss_pred ------------------------------------------------------------------HHHHHHHHcCC---
Q psy13909 109 ------------------------------------------------------------------LLDGLFESCGV--- 119 (328)
Q Consensus 109 ------------------------------------------------------------------il~~il~~~Gi--- 119 (328)
++..+|+.+|+
T Consensus 96 ~LRpd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl~~~ 175 (344)
T 1z7m_A 96 TLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKT 175 (344)
T ss_dssp EECCCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred ecCCCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCCcE
Confidence 44455555555
Q ss_pred ----------------ChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhcccccc
Q psy13909 120 ----------------PAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLK 183 (328)
Q Consensus 120 ----------------~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~ 183 (328)
+++....++.+++++++..++ +++.+.+|+++.+++|..++.+ |+.++++++. .+.
T Consensus 176 ~i~l~~~gi~~~~lg~~~~~~~~l~~~l~~~~~~~~~----~~l~~~~l~~~~~~~l~~l~~~-g~~~~l~~~~---~l~ 247 (344)
T 1z7m_A 176 VFEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLN----AFIEKNNFSKELRGLLKEIFIT-NELSRLENLV---TNT 247 (344)
T ss_dssp EEEEEEHHHHHHHHHHTTTCHHHHHHHHHTTCHHHHH----HHHTTSCCCHHHHHHHHHHTTC-CCHHHHHHHH---HHT
T ss_pred EEEECCHHHHHHHhCCCHHHHHHHHHHHHhhCHHHHH----HHHHhcCCCHHHHHHHHHHHhc-CCHHHHHHHH---Hhh
Confidence 445677788899998887664 4556679999999999999999 8888887774 344
Q ss_pred chhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCC
Q psy13909 184 TSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQ 263 (328)
Q Consensus 184 ~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g 263 (328)
.+..+.+++++|+.++++|+.+| +++|||+++||+|||||+|||++..+ ...+||+|||||+|++.||
T Consensus 248 ~~~~~~~~l~~l~~l~~~L~~~g---~~~~D~~lvrgldYYtG~vFe~~~~~------~~~~i~~GGRYD~L~~~fg--- 315 (344)
T 1z7m_A 248 KDDVLISSFDQLKEFSEKLSMIK---PIIIDLGMVPKMDYYTDLMFKAYSSA------ANQPILSGGRYDQLLSNFQ--- 315 (344)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTS---CCEECTTCCCSSTTCCSEEEEEEETT------EEEEEEEEEECHHHHHTSS---
T ss_pred cchhhHHHHHHHHHHHHHHhhCC---CEEEeCCCCCCCccCCCeEEEEEECC------CCCeEeeCccHHHHHHHhC---
Confidence 45577899999999999999998 79999999999999999999999875 2359999999999999997
Q ss_pred CCCCeeEEeeeHHHHHHHHHHhh
Q psy13909 264 RNVPCVGISIGVERIFSLIESKL 286 (328)
Q Consensus 264 ~~vPavGfsiglerL~~~l~~~~ 286 (328)
+++||||||||+|||+.+|++.+
T Consensus 316 ~~~pavGfaiglerl~~~l~~~~ 338 (344)
T 1z7m_A 316 EEAFAIGFCCHMDTILKALERQE 338 (344)
T ss_dssp SCCCCEEEEEEHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHHhcc
Confidence 68999999999999999988654
No 8
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3e-39 Score=319.27 Aligned_cols=242 Identities=24% Similarity=0.389 Sum_probs=203.0
Q ss_pred ccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-----------------------------------
Q psy13909 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC----------------------------------- 108 (328)
Q Consensus 64 ~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf----------------------------------- 108 (328)
++.+++|+||+||+|.++.++++|++.++++|++|||++|.||+|
T Consensus 3 ~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~ 82 (434)
T 1wu7_A 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEA 82 (434)
T ss_dssp CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCS
T ss_pred ccccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCC
Confidence 466889999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------HHHHHHHHcCCC-------
Q psy13909 109 -------------------------------------------------------------LLDGLFESCGVP------- 120 (328)
Q Consensus 109 -------------------------------------------------------------il~~il~~~Gi~------- 120 (328)
++..+|+.||++
T Consensus 83 t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~~~~~i~l 162 (434)
T 1wu7_A 83 TPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRI 162 (434)
T ss_dssp HHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred hHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCCCceEEEE
Confidence 555667777775
Q ss_pred ---------------hhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccch
Q psy13909 121 ---------------AKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTS 185 (328)
Q Consensus 121 ---------------~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~ 185 (328)
++.. .++.+++++++..|++++..+ .+.+++...++.+..++...|....+.++.
T Consensus 163 ~~~g~~~~~~~~~g~~~~~-~l~~~l~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-------- 232 (434)
T 1wu7_A 163 NSRKIMEEIIGGMTSSDPF-SVFSIIDRYHKISREEFVDQL-RSAGIGEDGVSMIADLCSGTRGIDEMARIT-------- 232 (434)
T ss_dssp EEHHHHHHHHHTTCSSCHH-HHHHHHHTTTTSCHHHHHHHH-HHTTCCHHHHHHHHHHHHSCBCHHHHHHHT--------
T ss_pred CChhhHHHHHHHhCcHhHH-HHHHHHHHHhccchHHHHHHH-HhCCCCHHHHHHHHHHHHhCCCHHHHHHHH--------
Confidence 2222 478889999999999887655 567999888999999888777632266554
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCC
Q psy13909 186 KSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRN 265 (328)
Q Consensus 186 ~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~ 265 (328)
+.+.+++++++++.++|+.+|+. +|.||++++||+|||||++||++... + ...+||+|||||+|++.|| |++
T Consensus 233 ~~~~~~~~~l~~~~~~l~~~g~~-~i~~D~~l~rgldYYtg~vFe~~~~~-g----~~~~v~~GGRYD~li~~fg--g~~ 304 (434)
T 1wu7_A 233 GKSSEEIARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRS-G----QFRAILGGGRYDNLASLMS--GES 304 (434)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETT-S----SCSCSSEEEECTTHHHHHH--SCC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCC-EEEECCCcccCccccCCeEEEEEECC-C----CcCeeeecccHHHHHHHhC--CCC
Confidence 13346889999999999999996 79999999999999999999999753 1 3569999999999999997 578
Q ss_pred CCeeEEeeeHHHHHHHHHHhhhhhhhcc-CCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 266 VPCVGISIGVERIFSLIESKLAAERTKL-RTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 266 vPavGfsiglerL~~~l~~~~~~~~~~~-~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
+||||||||+|||+.++.+.+. + ...+++|+|++.+++...++++++++||++||+|+
T Consensus 305 ~pa~Gf~igveRl~~~l~e~~~-----~~p~~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~ 363 (434)
T 1wu7_A 305 VPAVGFGMGDAVISLLLKRENV-----QIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNVT 363 (434)
T ss_dssp CCEEEEEEEHHHHHHHHHHTTC-----CCCCSSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEEEcHHHHHHHHHhcCC-----ccCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999886542 2 22458999999887778899999999999999874
No 9
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=8.6e-39 Score=319.16 Aligned_cols=129 Identities=26% Similarity=0.404 Sum_probs=111.2
Q ss_pred hHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCC
Q psy13909 188 ALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVP 267 (328)
Q Consensus 188 ~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vP 267 (328)
..+++++++.|.++|+.+|+. ++|||+++||+|||||+|||++....+ ..++|++|||||+|++.|| |+++|
T Consensus 257 ~~~~~~~l~~l~~~L~~~gi~--~~~d~~lvRgl~YYtg~vFe~~~~~~g----~~~tI~~GGRYD~Lv~~~g--~~~~P 328 (467)
T 4e51_A 257 GDVSRAHFEGLQRLLKANNVP--FTINPRLVRGLDYYNLTVFEWVTDKLG----AQGTVAAGGRYDPLIEQLG--GKPTA 328 (467)
T ss_dssp CHHHHHHHHHHHHHHHHTTCC--EEECTTCCCSCTTCCSEEEEEEECC--------CEEEEEEECTHHHHHTT--SSCCC
T ss_pred hHHHHHHHHHHHHHHHHcCCe--EEEcCccccCccccCCeEEEEEECCCC----CcceecCCCcHHHHHHHhC--CCCCC
Confidence 346778999999999999995 999999999999999999999998653 3479999999999999998 57899
Q ss_pred eeEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 268 CVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 268 avGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|||||+|+|||+.+|.+.+.. +...+++|+|++.+++...++++++++||++||+|+
T Consensus 329 avGfa~gleRl~~~l~~~~~~----~~~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve 385 (467)
T 4e51_A 329 ACGWAMGIERILELLKEEHLV----PEQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVI 385 (467)
T ss_dssp EEEEEEEHHHHHHHHHHTTCC----CCCCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceeehHHHHHHHHHHHhcCCc----ccCCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEE
Confidence 999999999999999875421 123568999999998888899999999999999985
No 10
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=9.3e-36 Score=292.86 Aligned_cols=247 Identities=20% Similarity=0.291 Sum_probs=171.5
Q ss_pred ceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH-------------------------------------
Q psy13909 66 TLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC------------------------------------- 108 (328)
Q Consensus 66 ~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf------------------------------------- 108 (328)
.+++|+||+||+|.++.++++|++.+.++|++|||++|.||+|
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 81 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPE 81 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCc
Confidence 3689999999999999999999999999999999999999998
Q ss_pred ----------------------------------------------------------------HHHHHHHHcCCChhhH
Q psy13909 109 ----------------------------------------------------------------LLDGLFESCGVPAKQF 124 (328)
Q Consensus 109 ----------------------------------------------------------------il~~il~~~Gi~~~~~ 124 (328)
++..+|+.||+++ +
T Consensus 82 ~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~--~ 159 (421)
T 1h4v_B 82 GTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRR--L 159 (421)
T ss_pred chHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCCc--e
Confidence 2333444444431 0
Q ss_pred HHHHHHhh-hhCccChHHHHHHHHHhc--CCCHHHHHHHHHHH----hccCC--HHHHHHHhccccccchhhhHHhHHHH
Q psy13909 125 RTICSSVD-KLDKWSWEDVRYEMTQEK--GLSKIIADKIGIYV----QQHGH--KELVEKFMQDDLLKTSKSALVGLAAI 195 (328)
Q Consensus 125 ~~i~~~id-kldk~~~~~v~~el~~~~--gL~~~~~d~L~~~~----~l~g~--~~~l~~l~~~~~l~~~~~~~e~l~~L 195 (328)
....+.+. .-++..|.+...+++... .++++..+++...+ ...+. .+.+..+ +.+++.. ....++++++
T Consensus 160 ~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~-~l~~~~~~~l 237 (421)
T 1h4v_B 160 KVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKEL-GVRPMLD-FLGEEARAHL 237 (421)
T ss_pred EEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhc-ChHHHHH-HhhHHHHHHH
Confidence 00000000 000001111112222211 35555555554322 22221 1222100 2233321 1234678899
Q ss_pred HHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeeeH
Q psy13909 196 KLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGV 275 (328)
Q Consensus 196 ~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsigl 275 (328)
+.+.++++.+|+ ++.||++++||+|||||++||++..+.+ ..++||+|||||+|++.|| |++.||||||||+
T Consensus 238 ~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g----~~~~v~~GGRYd~l~~~fg--g~~~pa~Gf~igi 309 (421)
T 1h4v_B 238 KEVERHLERLSV--PYELEPALVRGLDYYVRTAFEVHHEEIG----AQSALGGGGRYDGLSELLG--GPRVPGVGFAFGV 309 (421)
T ss_pred HHHHHHHHHcCC--eEEEecccccchhhhcCeEEEEEecCCC----CcCccccCCcHHHHHHHhC--CCCCCeEEEeecH
Confidence 999999999998 6999999999999999999999976532 3469999999999999997 5789999999999
Q ss_pred HHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 276 ERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 276 erL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|||+.++.+.+..+ +...+++|+|++.+++....+++++++||++ |+|+
T Consensus 310 eRl~~~l~e~~~~~---~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~ 358 (421)
T 1h4v_B 310 ERVALALEAEGFGL---PEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAE 358 (421)
T ss_pred HHHHHHHHhcCcCC---CCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEE
Confidence 99999988654221 1235689999999877788999999999999 8874
No 11
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=1.8e-36 Score=298.08 Aligned_cols=129 Identities=26% Similarity=0.399 Sum_probs=109.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCe
Q psy13909 189 LVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPC 268 (328)
Q Consensus 189 ~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPa 268 (328)
.+++++++.+.++|+.+|+ ++.||++++||+|||||++||++..+.+ ..++||+|||||+|++.|+ |+++||
T Consensus 230 ~~~~~~l~~~~~~l~~~g~--~i~~D~~l~rg~~YYtg~vFe~~~~~~g----~~~~v~~GGRYD~l~~~fg--g~~~pa 301 (423)
T 1htt_A 230 EESREHFAGLCKLLESAGI--AYTVNQRLVRGLDYYNRTVFEWVTNSLG----SQGTVCAGGRYDGLVEQLG--GRATPA 301 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTC--CCEECTTCCCSSTTCCSEEEEEECC--------CCEEEEEEECTTHHHHTT--SCCCCE
T ss_pred HHHHHHHHHHHHHHHHcCC--eEEEccccccchHHHcCceEEEEeCCCC----CcCCcCCCccHHHHHHHhC--CCCCCe
Confidence 4578999999999999998 6999999999999999999999876432 3469999999999999998 578999
Q ss_pred eEEeeeHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHC--CCccC
Q psy13909 269 VGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKN--GINAD 328 (328)
Q Consensus 269 vGfsiglerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~--GI~ae 328 (328)
||||||+|||+.++.+.+..+ +...+++|+|++.+++...++++++++||++ ||+|+
T Consensus 302 vGf~igveRl~~~l~e~~~~~---~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~ 360 (423)
T 1htt_A 302 VGFAMGLERLVLLVQAVNPEF---KADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLM 360 (423)
T ss_dssp EEEEEEHHHHHHHHHHHSTTC---CCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEE
T ss_pred EEEEecHHHHHHHHHhcCcCC---CCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEE
Confidence 999999999999988654221 2235679999998877788999999999999 99874
No 12
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3e-33 Score=274.72 Aligned_cols=131 Identities=24% Similarity=0.440 Sum_probs=109.8
Q ss_pred HHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCe
Q psy13909 189 LVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPC 268 (328)
Q Consensus 189 ~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPa 268 (328)
.+++++++.+.++|+.+|+ ++.||++++||++||||++||++..+....| ..++|++|||||+|++.|| |+++|+
T Consensus 229 ~~~~~~l~~l~~~l~~~gi--~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g-~~~~i~~GgRYd~l~~~~g--~~~~P~ 303 (420)
T 1qe0_A 229 EESKAYYEQVKAYLDDLGI--PYTEDPNLVRGLDYYTHTAFELMMDNPNYDG-AITTLCGGGRYNGLLELLD--GPSETG 303 (420)
T ss_dssp TTHHHHHHHHHHHHHHHTC--CCEECTTCCCCCTTEEEEEEEEEEECTTSTT-SEEEEEEEEEEESHHHHTT--CCCCEE
T ss_pred HHHHHHHHHHHHHHHHcCC--eEEECcccccchhhhcCeEEEEEEcCCCCCC-CcCccccCccHHHHHHHhC--CCCCCE
Confidence 4577889999999999998 5999999999999999999999887530000 3469999999999999997 578999
Q ss_pred eEEeeeHHHHHHHHHHhhhhhhhccC-CCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 269 VGISIGVERIFSLIESKLAAERTKLR-TTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 269 vGfsiglerL~~~l~~~~~~~~~~~~-~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|||++|+|||+.++++.+.. +. ..+++|+|++.+++...+++++++.||++||+|+
T Consensus 304 vg~~igveRl~~~le~~~~~----~p~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~ 360 (420)
T 1qe0_A 304 IGFALSIERLLLALEEEGIE----LDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD 360 (420)
T ss_dssp EEEEEEHHHHHHHHHHTTCC----CCCCCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEecHHHHHHHHHhcCCC----CCCCCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEE
Confidence 99999999999999754321 22 4567999999987778899999999999999874
No 13
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.94 E-value=6e-28 Score=225.46 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=141.7
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHHhcCCcc--cchHHH-HHHHHHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHH
Q psy13909 72 GTRDYGPEPMVLRKNVLEQIISVFKRHGAQT--IDTPVC-LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQ 148 (328)
Q Consensus 72 GtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~--IdtPvf-il~~il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~ 148 (328)
|..-+..+......+|+..+.++++..|+.. |+.-.. +++++++. ++++....++.+++++++..++ +++.
T Consensus 94 g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~----~~l~ 167 (275)
T 1usy_A 94 GLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKE--IPKDLHEKVLNLIDTKNLAEIE----FLSH 167 (275)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTHHHHHHTT--SCGGGHHHHHHHHHTTCHHHHH----HHHH
T ss_pred CEEEecCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHHh--CCHHHHHHHHHHHHccCHHHHH----HHHH
Confidence 4444555556667999999999999999853 111111 67888865 7788888999999999887654 3456
Q ss_pred hcCCCHHHHHHHHHHHhccCCHHHHHHHhccccccchhhhHHhHHHHHHHHHHHH-HcCCCceEEEccCCccCCccccce
Q psy13909 149 EKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCD-IYELTDKVIFDLSLARGLDYYTGI 227 (328)
Q Consensus 149 ~~gL~~~~~d~L~~~~~l~g~~~~l~~l~~~~~l~~~~~~~e~l~~L~~l~~~L~-~~gi~~~i~fDlsl~RgldYYTGi 227 (328)
+.+++++.++.+..++.+.|++++++++ ..+ .+++++|+.++++|+ .+| ..++.|||+++||+|||||+
T Consensus 168 ~~~l~~~~~~~l~~l~~~~g~~~~l~~l------~~~---~~~l~~l~~l~~~l~~~~g-~~~~~~D~~lvRgldYYtG~ 237 (275)
T 1usy_A 168 MKKIDLSRVEKIIEDSIYRRSPEHLKTM------DLP---LSVREDLLSASSFLQEKFP-TVSVEIDLTLARTIEEYCGL 237 (275)
T ss_dssp HTCCCCTHHHHHHHHHHHCCSGGGGGTS------CCC---HHHHHHHHHHHHHHHHHCS-SSEEEECCCCGGGGGTCSSE
T ss_pred hcCCCHHHHHHHHHHHHhhCCHHHHHHH------hcC---HHHHHHHHHHHHHHHHhcC-CCeEEEeccccCCCCccCCe
Confidence 6899999999999999999887655442 222 256899999999999 999 55899999999999999999
Q ss_pred EEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHH
Q psy13909 228 IYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERI 278 (328)
Q Consensus 228 IFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL 278 (328)
|||++..+ ..++||+|||||+| ++||||||||+|||
T Consensus 238 vFe~~~~~------~~~~i~~GGRYD~l---------~~pavGfsig~er~ 273 (275)
T 1usy_A 238 IFTIYDTS------SSRLVAAGGEYTVN---------GEKGVGGSIFLEGK 273 (275)
T ss_dssp EEEEEETT------TTEEEEEEEEEEET---------TEEEEEEEEEEEEE
T ss_pred EEEEEECC------CCCeEeeecCCCCC---------CCCEEEEEEEeecc
Confidence 99999875 34799999999996 48999999999986
No 14
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.72 E-value=1.5e-18 Score=176.81 Aligned_cols=129 Identities=13% Similarity=0.108 Sum_probs=89.4
Q ss_pred HHHHHHHH----HHHHcCC--CceEEEccCCcc--------------------CCccccceEEEEEEcCCccCCcccccc
Q psy13909 193 AAIKLLLS----YCDIYEL--TDKVIFDLSLAR--------------------GLDYYTGIIYEAVLIGDRKKGESVGSV 246 (328)
Q Consensus 193 ~~L~~l~~----~L~~~gi--~~~i~fDlsl~R--------------------gldYYTGiIFE~~~~~~~~~~~~~~sI 246 (328)
++++.+.. ++..+|+ ..++.+|++++| |+||||+++||++....+ ...++
T Consensus 320 ~el~~~~g~~~g~~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G----~~~~~ 395 (572)
T 2j3l_A 320 EDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEG----DPSPD 395 (572)
T ss_dssp HHHHHHHSSCTTSCCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTT----CBCTT
T ss_pred HHHHHhhCCCccccCCccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcC----Ccccc
Confidence 45555544 3333443 237899999999 789999999998765432 34466
Q ss_pred ccCccch-----------hhh----hhcC-----CCCC-CCCee-EEeeeHHHHHHHHHHhh-----hhhhhccCCCcce
Q psy13909 247 AGGGRYD-----------KLV----GMFD-----PRQR-NVPCV-GISIGVERIFSLIESKL-----AAERTKLRTTEVQ 299 (328)
Q Consensus 247 a~GGRYD-----------~Lv----~~f~-----~~g~-~vPav-GfsiglerL~~~l~~~~-----~~~~~~~~~~~~~ 299 (328)
|+ |||| +|- +.|+ ..|. ..|++ ||+||+|||+.+|.+.. ... .....+++
T Consensus 396 ~g-g~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~--p~~~ap~~ 472 (572)
T 2j3l_A 396 GN-GVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINW--PTGIAPFD 472 (572)
T ss_dssp SS-SBEEEEEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECC--CTTTSSCS
T ss_pred cC-CcceeccceEEEEEeccCcccccccCCEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccCccc--CCCcCCeE
Confidence 65 7777 332 4452 1243 58988 89999999999865432 110 11224589
Q ss_pred EEEEeCC---chhHHHHHHHHHHHHHCCCccC
Q psy13909 300 VYVASAQ---KNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 300 VlV~s~~---~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|+|++.+ +.....+.++++.||++||+|+
T Consensus 473 v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~ 504 (572)
T 2j3l_A 473 LHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVL 504 (572)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHhCCCeEE
Confidence 9999998 6677889999999999999874
No 15
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.64 E-value=3.3e-16 Score=152.92 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=82.8
Q ss_pred HHHHHHHcCCCceE----------EEccCCcc--CCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCC
Q psy13909 198 LLSYCDIYELTDKV----------IFDLSLAR--GLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRN 265 (328)
Q Consensus 198 l~~~L~~~gi~~~i----------~fDlsl~R--gldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~ 265 (328)
+.+.|+..|++-.+ .+|+.+++ |++||||++|.-+. -+.+.|+||++. .| +..
T Consensus 200 ~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~----------l~~~~~~~y~~~---~g--~~~ 264 (401)
T 1evl_A 200 LAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFS----------LPSRLSASYVGE---DN--ERK 264 (401)
T ss_dssp HHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESS----------HHHHTTCCEECT---TS--CEE
T ss_pred HHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccc----------cccccCCEEECC---CC--CCc
Confidence 44456667764211 27778888 99999999983211 145789999852 23 246
Q ss_pred CCeeEE-ee--eHHHHHHHHHHh--hhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 266 VPCVGI-SI--GVERIFSLIESK--LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 266 vPavGf-si--glerL~~~l~~~--~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
+|++|+ ++ |+|||+.++.+. ...+ ....+++|+|++.+++....++++++.||++||+|+
T Consensus 265 ~p~~~~~~~~GgieRli~~l~e~~~~~~p---~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~ 329 (401)
T 1evl_A 265 VPVMIHRAILGSMERFIGILTEEFAGFFP---TWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVK 329 (401)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTTCCC---TTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEecCCCcHHHHHHHHHHHhCCcCC---CCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEE
Confidence 899999 88 999999988764 2111 123568999999998888999999999999999874
No 16
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.62 E-value=1.5e-16 Score=158.20 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=77.0
Q ss_pred eEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCC--eeEEeeeHHHHHHHHHHhh-
Q psy13909 210 KVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVP--CVGISIGVERIFSLIESKL- 286 (328)
Q Consensus 210 ~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vP--avGfsiglerL~~~l~~~~- 286 (328)
.+.+|++++||++ ||.+||+ + ...+++.||||++. + |++.| ++||+||+|||+.++.+..
T Consensus 290 ~~~~~l~~~rgl~--~G~iFel---g------~~~s~~~g~ry~~~---~---G~~~p~~~~gfgiGveRli~al~e~~~ 352 (458)
T 2i4l_A 290 VPEANRLNTRGIE--VGQIFYF---G------TKYSDSMKANVTGP---D---GTDAPIHGGSYGVGVSRLLGAIIEACH 352 (458)
T ss_dssp SCTTTEEEEEEEE--EEEEEEE---E------THHHHHTTCEEECT---T---SCEEECEEEEEEEEHHHHHHHHHHHSE
T ss_pred CCCcCceeeeeec--cCcEEEe---c------ccccccCCcEEECC---C---CCEeceEEeeecccHHHHHHHHHHhhc
Confidence 3568999999999 9999998 2 34689999999864 3 46677 8999999999999864321
Q ss_pred hhhhhcc--CCCcceEEEEeCC---chhHHHHHHHHHHHHHCCCccC
Q psy13909 287 AAERTKL--RTTEVQVYVASAQ---KNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 287 ~~~~~~~--~~~~~~VlV~s~~---~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
......+ ...+.+|+|++.+ +.....+.+++++||++||+|+
T Consensus 353 d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~ 399 (458)
T 2i4l_A 353 DDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVL 399 (458)
T ss_dssp ETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 0000011 1245789999885 5567889999999999999874
No 17
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.42 E-value=4.5e-13 Score=139.08 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=41.4
Q ss_pred HHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCccccccc-cc-------cccccceeC------
Q psy13909 4 LRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDV-EY-------DQVKLTLKT------ 69 (328)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~------ 69 (328)
..+++.++.||+.||.|| +.++++..|+..|++|..+|+.+...+........+ +. ...-|..+.
T Consensus 11 ~~~~~~v~~~~~~vr~lk-~~~a~~~~i~~av~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~r~gf~~~~~eiy~g 89 (693)
T 2zt5_A 11 APLRLAVRQQGDLVRKLK-EDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGG 89 (693)
T ss_dssp ------------------------------------------------------CCCHHHHHHHHHHTTSEEETTGGGTC
T ss_pred HHHHHHHHHhhHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHhCCCcccchhhcCC
Confidence 345788999999999999 889999999999999999999886433211111100 00 123365555
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHH-hcCCcccchHHH
Q psy13909 70 PKGTRDYGPEPMVLRKNVLEQIISVFK-RHGAQTIDTPVC 108 (328)
Q Consensus 70 pkGtrD~~p~~~~~r~~v~~~i~~~f~-~~G~~~IdtPvf 108 (328)
++|+.||+|..+.+++.|++.+++.|. +.||++|+||++
T Consensus 90 ~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l 129 (693)
T 2zt5_A 90 VSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTML 129 (693)
T ss_dssp CTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSE
T ss_pred CCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCc
Confidence 499999999999999999999999998 569999999998
No 18
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=96.36 Aligned_cols=62 Identities=31% Similarity=0.395 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCccccccccccccccceeCCCCCccC
Q psy13909 3 RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDY 76 (328)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkGtrD~ 76 (328)
+..+.++|+.|++++|.|+ ..+.+...|+++|++|++++++++ +++.+++|++++||||+|-
T Consensus 11 ~~~i~~~i~~qg~lvR~LK-~~k~~~~~I~eev~kl~~~ka~l~-----------~~~~k~kf~LKTPKGT~~~ 72 (73)
T 1x59_A 11 RAALEELVKLQGERVRGLK-QQKASAELIEEEVAKLLKLKAQLG-----------PDESKQKFVLKTPKSGPSS 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHC-----------CCCCSCCCCCCSTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHhhhcC-----------ccccccceeeeCCCCCCCC
Confidence 6778999999999999999 888999999999999999999996 4567899999999999994
No 19
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.26 E-value=1e-11 Score=124.00 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=70.9
Q ss_pred EEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh-hhhh
Q psy13909 211 VIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK-LAAE 289 (328)
Q Consensus 211 i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~-~~~~ 289 (328)
..+|.-+.-|-.||+|++|+.- ...+.+.|+||++. -|. ...+|++||++| +|++.+|... ....
T Consensus 212 ~~ie~~~~dgr~~~~gt~~~lg---------~~~s~~~g~~y~~~---~G~-~~~~~~~~~Gig-eRli~~lie~~~d~~ 277 (477)
T 1hc7_A 212 TTIEALMKDGKALQAGTSHYLG---------ENFARAFDIKFQDR---DLQ-VKYVHTTSWGLS-WRFIGAIIMTHGDDR 277 (477)
T ss_dssp EEEEEECTTSCEEEEEEEEEEE---------THHHHHTTCEEECT---TSC-EEECEEEEEEEE-THHHHHHHHHHCBTT
T ss_pred eEEEEEcCCCcEEEEeeeEEcc---------cccccccCeEEECC---CCC-EEeeeEeeccHH-HHHHHHHHHHhCccc
Confidence 3444444335568999999841 23589999999863 221 124678999999 9999988532 1100
Q ss_pred hh--ccCCCcceEEEEeCCc-----hhHHHHHHHHHHHHHCCCccC
Q psy13909 290 RT--KLRTTEVQVYVASAQK-----NLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 290 ~~--~~~~~~~~VlV~s~~~-----~~l~e~l~l~~~Lw~~GI~ae 328 (328)
.. .....+++|+|++.++ .....+.+|++.||++||+|+
T Consensus 278 gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~ 323 (477)
T 1hc7_A 278 GLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVH 323 (477)
T ss_dssp BCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEE
Confidence 00 1223568999999875 567889999999999999874
No 20
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.20 E-value=2.3e-11 Score=125.44 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCCCeeEE-ee--eHHHHHHHHHHhhhhhhhccCCCcceEEEEeCCchhHHHHHHHHHHHHHCCCccC
Q psy13909 264 RNVPCVGI-SI--GVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 264 ~~vPavGf-si--glerL~~~l~~~~~~~~~~~~~~~~~VlV~s~~~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
+..|++|+ ++ ++||++.+|.+.....- .....+.+|+|++.++.....+.++++.||++||+|+
T Consensus 504 ~~~P~~~hrai~G~ieR~i~~liE~~~~~~-P~~laP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~ 570 (642)
T 1qf6_A 504 RKVPVMIHRAILGSMERFIGILTEEFAGFF-PTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVK 570 (642)
T ss_dssp EECCEEEEEEEEEEHHHHHHHHHHHHTTCC-CTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEE
T ss_pred CcCcEEEEeccCCCHHHHHHHHHHHhcCCC-CcccCCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEE
Confidence 56899988 77 99999988654321100 1123568999999998888899999999999999874
No 21
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.13 E-value=1e-12 Score=130.94 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=40.2
Q ss_pred eeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 67 ~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+-+|+|++||+|..+.+++.|.+.+.+.|+++||++|.||+|
T Consensus 35 ~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l 76 (471)
T 3a32_A 35 TFTGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPII 76 (471)
T ss_dssp HHHCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred CccCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCee
Confidence 337999999999999999999999999999999999999998
No 22
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.09 E-value=1.4e-10 Score=119.76 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCcccccc----ccCccch-hhhhhcCCCCCCCCee--
Q psy13909 197 LLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSV----AGGGRYD-KLVGMFDPRQRNVPCV-- 269 (328)
Q Consensus 197 ~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sI----a~GGRYD-~Lv~~f~~~g~~vPav-- 269 (328)
.+.+.|+..|++ +..++++ +..|+..+.|++. ...+..- ..+++ .-++||| ..++..| +...|++
T Consensus 446 ~l~~~l~~~g~~--~~~~~~~--~~~ygpki~~~~~-d~lg~~~-~~gtiq~D~~l~~~~d~~Y~~~~g--~~~~P~~ih 517 (645)
T 1nyr_A 446 MLKEAADELGLS--YEEAIGE--AAFYGPKLDVQVK-TAMGKEE-TLSTAQLDFLLPERFDLTYIGQDG--EHHRPVVIH 517 (645)
T ss_dssp HHHHHHHHHCCC--CCCEESC--SBTTBCEEEEEEC-CTTSCCE-EEEEEEEESSHHHHTTCCEECTTS--CEECCEEEE
T ss_pred HHHHHHHHcCCC--eEecCCC--CceeCCccceehh-hhhCchh-hcceEEeecccccccceEEECCCC--CccCcEEEE
Confidence 455567777775 3445543 4556666666542 1111000 01111 2256777 4555544 3578999
Q ss_pred -EEeeeHHHHHHHH-HHhhhhhhhccCCCcceEEEEeCC-chhHHHHHHHHHHHHHCCCccC
Q psy13909 270 -GISIGVERIFSLI-ESKLAAERTKLRTTEVQVYVASAQ-KNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 270 -GfsiglerL~~~l-~~~~~~~~~~~~~~~~~VlV~s~~-~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
|++.|+||++.++ ++..... .....+.+|+|++.+ +.....+.++++.||++||+|+
T Consensus 518 ~~~~GgieR~i~~liE~~~~~~--P~~lap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~ 577 (645)
T 1nyr_A 518 RGVVSTMERFVAFLTEETKGAF--PTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVS 577 (645)
T ss_dssp EEEEEEHHHHHHHHHHHHTTCC--CTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred eccCCcHHHHHHHHHHHhcCCC--CCCCCCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999766 4422110 111256899999998 7778899999999999999874
No 23
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.98 E-value=4.7e-10 Score=111.41 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=68.8
Q ss_pred EEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHH-Hhhhhh
Q psy13909 211 VIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIE-SKLAAE 289 (328)
Q Consensus 211 i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~-~~~~~~ 289 (328)
..++.-+.-|..++.|++|+. . ...+.+.|+||++-- |.. ..+|++||++| ||++.+|. ......
T Consensus 207 ~~ie~~~~dg~~~e~gt~~~l--g-------~~~s~~~~~~Y~~~~---G~~-~~v~~~~~Gig-eRli~alie~~~d~~ 272 (459)
T 1nj8_A 207 MAFDTIFPDGRTMQIATVHNL--G-------QNFSKTFEIIFETPT---GDK-DYAYQTCYGIS-DRVIASIIAIHGDEK 272 (459)
T ss_dssp EEEEEECTTSCEEEEEEEEEE--E-------THHHHHTTCEEECTT---SSE-EECEEEEEEEC-THHHHHHHHHHCBTT
T ss_pred eeEEEEcCCCcEEEEEEEeec--c-------cccccccCeEEECCC---CCE-eeeeEeeccHH-HHHHHHHHHHhCCCc
Confidence 344444444777888888752 1 234789999998721 210 24679999999 99999884 322100
Q ss_pred h--hccCCCcceEEEEeC-C-c---hhHHHHHHHHHHHHHCCCccC
Q psy13909 290 R--TKLRTTEVQVYVASA-Q-K---NLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 290 ~--~~~~~~~~~VlV~s~-~-~---~~l~e~l~l~~~Lw~~GI~ae 328 (328)
. -.....+++|+|++. + + .....+.+|++.||++ |+|+
T Consensus 273 gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~ 317 (459)
T 1nj8_A 273 GLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVH 317 (459)
T ss_dssp BCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEE
T ss_pred eeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEE
Confidence 0 012235689999998 5 3 5678899999999999 8874
No 24
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=98.87 E-value=2.3e-09 Score=107.60 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=130.0
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHH----HHHH---HHHHc----------C---------CChh
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC----LLDG---LFESC----------G---------VPAK 122 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf----il~~---il~~~----------G---------i~~~ 122 (328)
.++|+.||+|..+.+++.|.+.+.+.|++ ||++|.||+| ++.+ -++.. | +-+.
T Consensus 59 ~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt 137 (501)
T 1nj1_A 59 PVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPT 137 (501)
T ss_dssp SSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSS
T ss_pred CCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccC
Confidence 56999999999999999999999999999 9999999999 3321 11110 0 1111
Q ss_pred hHHHHHHHhhhh----CccC-----------hHHH-------HHHHH-----HhcCCCHHHHHH-HHHHHhccCCHHHHH
Q psy13909 123 QFRTICSSVDKL----DKWS-----------WEDV-------RYEMT-----QEKGLSKIIADK-IGIYVQQHGHKELVE 174 (328)
Q Consensus 123 ~~~~i~~~idkl----dk~~-----------~~~v-------~~el~-----~~~gL~~~~~d~-L~~~~~l~g~~~~l~ 174 (328)
.-..++.+..+. ...| |+.- .+++. ...+.+++.++. +..++.+. .+.++
T Consensus 138 ~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~--~~i~~ 215 (501)
T 1nj1_A 138 SETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIY--KEFFN 215 (501)
T ss_dssp SHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHH--HHHHH
T ss_pred CCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHH--HHHHH
Confidence 122233332111 0000 0000 01222 234455444332 22222211 12333
Q ss_pred HHhccccccchhhhHHhHHHHHHHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccchh
Q psy13909 175 KFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDK 254 (328)
Q Consensus 175 ~l~~~~~l~~~~~~~e~l~~L~~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD~ 254 (328)
.|--.-.+..+... + ..++-...+.+|..+..|..|+.|.+|+.- ...+.+.|+||++
T Consensus 216 ~Lgl~~~~~~~~~~-----e--------~~~~a~~~~die~~l~~g~~~ei~t~~~lg---------~~~a~~~~~ry~~ 273 (501)
T 1nj1_A 216 SLGIPYLITRRPPW-----D--------KFPGSEYTVAFDTLMPDGKTLQIGTVHNLG---------QTFARTFEIKFET 273 (501)
T ss_dssp HHTCCCEEEECCTT-----T--------SCTTCSEEEEEEEECTTSCEEEEEEEEEEE---------THHHHHHTCEEEC
T ss_pred HCCCeEEEEeCCch-----h--------hcCCcccceEEEEEcCCCCEEEEEEEEecc---------ccchhhcCeEEEC
Confidence 33110001111000 0 112333456778778888888888887542 2347889999987
Q ss_pred hhhhcCCCCCCCCeeEEeeeHHHHHHHHHH-hhhhhhh--ccCCCcceEEEEeC-C-c---hhHHHHHHHHHHHHHCCCc
Q psy13909 255 LVGMFDPRQRNVPCVGISIGVERIFSLIES-KLAAERT--KLRTTEVQVYVASA-Q-K---NLLEERMRICSYLWKNGIN 326 (328)
Q Consensus 255 Lv~~f~~~g~~vPavGfsiglerL~~~l~~-~~~~~~~--~~~~~~~~VlV~s~-~-~---~~l~e~l~l~~~Lw~~GI~ 326 (328)
- . |. ...++.+||++| +|++.+|.+ ....... .....+.+|+|++. + + .....+.+|+++||++||+
T Consensus 274 ~--~-g~-~~~~h~~g~Gig-eRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~ 348 (501)
T 1nj1_A 274 P--E-GD-HEYVHQTCYGLS-DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFR 348 (501)
T ss_dssp T--T-SC-EEECEEEEEEEC-THHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred C--C-CC-EEeeeeccccHH-HHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCE
Confidence 2 1 21 123568999999 999988843 2210000 11225679999998 5 4 5678899999999999998
Q ss_pred cC
Q psy13909 327 AD 328 (328)
Q Consensus 327 ae 328 (328)
|+
T Consensus 349 v~ 350 (501)
T 1nj1_A 349 VH 350 (501)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 25
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.75 E-value=7.7e-08 Score=95.48 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCceEEEccCCccCCccccceEEEEEEcC-CccCCcccccc----ccCccchhhh-hhcCCCCCCCCee-
Q psy13909 197 LLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIG-DRKKGESVGSV----AGGGRYDKLV-GMFDPRQRNVPCV- 269 (328)
Q Consensus 197 ~l~~~L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~-~~~~~~~~~sI----a~GGRYD~Lv-~~f~~~g~~vPav- 269 (328)
.|.++|+..|+ .+.++++ .|. || |.-.++...+ .++.. ..++| ..+.|||-.. ..-| +...|.+
T Consensus 246 ~L~~~l~~~g~--~~~~~~g--~ga-fy-gpkid~~~~d~~gr~~-q~~Tiqld~~~~~rf~l~y~~~~g--~~~~P~~i 316 (460)
T 3uh0_A 246 VLKEILEESGK--PWKLNPG--DGA-FY-GPKLDIMVTDHLRKTH-QVATIQLDFQLPERFDLKFKDQDN--SYKRPIMI 316 (460)
T ss_dssp HHHHHHHHHTC--CEEEETT--CSC-SS-CCEEEEEEECTTSCEE-EEEEEEEESHHHHHTTCCEECTTS--CEECCEEE
T ss_pred HHHHHHHHhCC--CeeECCC--ccc-cc-cceEEEEEEccCCCee-eecccccccccccccceEEECCCC--CccCcEEE
Confidence 35566778887 4778876 333 77 5433544322 11000 11222 2345666432 2212 3568988
Q ss_pred ---EEeeeHHHHHHHHHHhh--hhhhhccCCCcceEEEEeCCch---hHHHHHHHHHHHHHC
Q psy13909 270 ---GISIGVERIFSLIESKL--AAERTKLRTTEVQVYVASAQKN---LLEERMRICSYLWKN 323 (328)
Q Consensus 270 ---GfsiglerL~~~l~~~~--~~~~~~~~~~~~~VlV~s~~~~---~l~e~l~l~~~Lw~~ 323 (328)
+|+ |+||++.+|.+.. ..+ ....+.+|+|++.+++ ....+.+++++||++
T Consensus 317 h~~~~G-g~eRli~~Lie~~~g~~P---~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~ 374 (460)
T 3uh0_A 317 HRATFG-SIERFMALLIDSNEGRWP---FWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNE 374 (460)
T ss_dssp EEEEEE-EHHHHHHHHHHHHTTCCC---GGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCC
T ss_pred ecCcch-HHHHHHHHHHHHcCCCCC---CCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcC
Confidence 477 8999999886532 222 2346789999999876 778899999999999
No 26
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=98.03 E-value=6.6e-06 Score=58.58 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=40.3
Q ss_pred HHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q psy13909 7 INEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTT 52 (328)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (328)
...|+.||+.||.|| +.++++..|+.+|++|+.||+++..+++..
T Consensus 3 ~~~V~~QG~~VR~LK-a~kA~k~~i~~aV~~Ll~LK~~~~~~tg~~ 47 (59)
T 1d2d_A 3 YDKIAAQGEVVRKLK-AEKAPKAKVTEAVECLLSLKAEYKEKTGKE 47 (59)
T ss_dssp CHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHHHHHHCSSSSSS
T ss_pred HHHHHHhHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999 999999999999999999999998655443
No 27
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=97.80 E-value=4e-05 Score=54.16 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=41.3
Q ss_pred HHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcccc
Q psy13909 4 LRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTT 49 (328)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (328)
..+...|+.||+.||.|| +.++++..|+.+|++|+.||+++..++
T Consensus 3 ~~l~~~v~~qG~~VR~LK-a~kA~k~~i~~aV~~Ll~lK~~~~~~t 47 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELK-AKKAPKEDVDAAVKQLLSLKAEYKEKT 47 (57)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999 899999999999999999999997543
No 28
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.63 E-value=6.4e-05 Score=75.29 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.6
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHH--hcCCcccchHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFK--RHGAQTIDTPVC 108 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~--~~G~~~IdtPvf 108 (328)
.++|+.||+|..+.+++.|.+.+++.|. ++||++|+||++
T Consensus 27 ~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l 68 (505)
T 1ati_A 27 GLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVL 68 (505)
T ss_dssp CCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSE
T ss_pred CCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEcccc
Confidence 4699999999999999999999999999 999999999998
No 29
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.00012 Score=55.06 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=42.1
Q ss_pred HHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccC
Q psy13909 4 LRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTN 50 (328)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (328)
..+...|+.||+.||.|| +.+++...|+.+|++|+.||+++..+++
T Consensus 16 ~~l~~~V~~QG~~VR~LK-a~kA~k~~i~~aV~~Ll~LKa~l~~~tg 61 (79)
T 2djv_A 16 QALMDEVTKQGNIVRELK-AQKADKNEVAAEVAKLLDLKKQLAVAEG 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-hccCcHhHhhHHHHHHHHHHHHHHHhcC
Confidence 467899999999999999 9999999999999999999999976554
No 30
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=97.42 E-value=5.5e-05 Score=70.67 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=50.9
Q ss_pred ccCCccCCccccc-eEEEEEEcCCc--cCCc--ccccccc--CccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 214 DLSLARGLDYYTG-IIYEAVLIGDR--KKGE--SVGSVAG--GGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 214 Dlsl~RgldYYTG-iIFE~~~~~~~--~~~~--~~~sIa~--GGRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
|+.+++++|||.. -+||+...... +... ..-..+| +++|+.++..++. |...|+.||++|+|||+.++...
T Consensus 198 d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~-G~p~P~~G~glGieRL~mll~g~ 275 (294)
T 1nnh_A 198 VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKA-GKLKPSAGAGIGVERLVRFIVGA 275 (294)
T ss_dssp ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHT-TCCCCEEEEEEEHHHHHHHHHTC
T ss_pred CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhc-CCCCCceEEEEcHHHHHHHHhCC
Confidence 8889999999998 78898764310 0000 0012233 7899999999853 35569999999999999888753
No 31
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=95.57 E-value=0.021 Score=56.64 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccC
Q psy13909 3 RLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTN 50 (328)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (328)
...+...|+.||+.||.|| +.++++..|+++|++|+.||++-...++
T Consensus 9 ~~~~~~~i~~qg~~vr~lk-~~~a~k~~i~~~v~~Ll~lk~~~k~~tg 55 (477)
T 1r6t_A 9 LLELFNSIATQGELVRSLK-AGNASKDEIDSAVKMLVSLKMSYKAAAG 55 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHhHHHHHhcc-cccccchhhHHHHHHHHHHHHHHHHhcc
Confidence 4578899999999999999 9999999999999999999999765444
No 32
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=95.54 E-value=0.0046 Score=61.99 Aligned_cols=46 Identities=13% Similarity=0.285 Sum_probs=41.8
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHH
Q psy13909 69 TPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLF 114 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il 114 (328)
.++|+.||+|..+.+++.|.+.+.+.|+++||++|.||+|+-..+|
T Consensus 43 ~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~ 88 (518)
T 3ial_A 43 PVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFL 88 (518)
T ss_dssp SSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHH
T ss_pred CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHH
Confidence 6899999999999999999999999999999999999999444444
No 33
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=95.29 E-value=0.0059 Score=61.22 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=44.7
Q ss_pred eCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH
Q psy13909 68 KTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFES 116 (328)
Q Consensus 68 ~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~ 116 (328)
..++|+.||+|..+.+|+.|.+.+.+.|+++||++|.||+|+-..+|+.
T Consensus 48 ~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k 96 (519)
T 4hvc_A 48 HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEK 96 (519)
T ss_dssp CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTT
T ss_pred cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhc
Confidence 3579999999999999999999999999999999999999976666663
No 34
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=95.04 E-value=0.0054 Score=60.00 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=44.7
Q ss_pred CCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 70 pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
-+|+.||+|..+.+++.|.+.+.+.|.+|||++|.||+|.-..+|..+|
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG 209 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTG 209 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHS
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcC
Confidence 4899999999999999999999999999999999999996666666666
No 35
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=94.73 E-value=0.06 Score=52.50 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=43.8
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 71 kGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
.|+.||+|..+.+++.|.+.+.+.+.++||++|.||+|+-..+|..+|
T Consensus 156 ~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG 203 (421)
T 1ses_A 156 SRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTG 203 (421)
T ss_dssp SSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHT
T ss_pred CCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcC
Confidence 799999999999999999999999999999999999996666666666
No 36
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=94.67 E-value=0.0068 Score=60.57 Aligned_cols=63 Identities=24% Similarity=0.203 Sum_probs=46.9
Q ss_pred CC-eeEEeeeHHHHHHHHHHhhhh------h--h----hccCCCcceEEEEeCCc---hhHHHHHHHHHHHHHCC-CccC
Q psy13909 266 VP-CVGISIGVERIFSLIESKLAA------E--R----TKLRTTEVQVYVASAQK---NLLEERMRICSYLWKNG-INAD 328 (328)
Q Consensus 266 vP-avGfsiglerL~~~l~~~~~~------~--~----~~~~~~~~~VlV~s~~~---~~l~e~l~l~~~Lw~~G-I~ae 328 (328)
+| ++|||+|+||++.++...... . . -.....+.+|+|++.++ .....+.++++.||++| |+|+
T Consensus 354 ~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~ 433 (505)
T 1ati_A 354 VPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVL 433 (505)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred cceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEE
Confidence 77 999999999999877643200 0 0 00112468999999886 67788999999999999 8874
No 37
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=94.41 E-value=0.075 Score=52.28 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=34.5
Q ss_pred CCCc-cCCchhHHHHHHHHHHHHHHH--HhcCCcccchHHH
Q psy13909 71 KGTR-DYGPEPMVLRKNVLEQIISVF--KRHGAQTIDTPVC 108 (328)
Q Consensus 71 kGtr-D~~p~~~~~r~~v~~~i~~~f--~~~G~~~IdtPvf 108 (328)
+|+- ||+|.-+.+++.|.+.+.+.+ .+.||..|+||++
T Consensus 51 ~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l 91 (454)
T 1g5h_A 51 SGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQ 91 (454)
T ss_dssp HCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSE
T ss_pred CcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCcc
Confidence 4777 999999999999999999884 6899999999987
No 38
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=93.33 E-value=0.021 Score=56.33 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=45.5
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCC
Q psy13909 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGV 119 (328)
Q Consensus 71 kGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi 119 (328)
.|+.+|+|..+.+++.|.+.+.+.+.++||++|.||+|+-..+|+.+|-
T Consensus 183 ~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~ 231 (455)
T 2dq0_A 183 SRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTS 231 (455)
T ss_dssp TTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSC
T ss_pred CCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCC
Confidence 6999999999999999999999999999999999999977778887773
No 39
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=91.84 E-value=0.05 Score=54.47 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=45.4
Q ss_pred ccee-CCCCCccCCchhHHHHHHHHHHHHH-HHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 65 LTLK-TPKGTRDYGPEPMVLRKNVLEQIIS-VFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 65 ~~~~-~pkGtrD~~p~~~~~r~~v~~~i~~-~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
|..+ .++|+.||+|..+.+++.|.+.+.+ .+.++||++|.||+++-..+|+.+|
T Consensus 214 ~i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SG 269 (522)
T 2cja_A 214 WLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSG 269 (522)
T ss_dssp SEEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHT
T ss_pred CeeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcC
Confidence 5555 7799999999999999999999997 5899999999999995555555444
No 40
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=90.11 E-value=0.34 Score=48.43 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=41.6
Q ss_pred eeEEeeeHHHHHHHHHHhhh-hhh--hccCCCcceEEEEeCC----------chhHHHHHHHHHHHHHCCCccC
Q psy13909 268 CVGISIGVERIFSLIESKLA-AER--TKLRTTEVQVYVASAQ----------KNLLEERMRICSYLWKNGINAD 328 (328)
Q Consensus 268 avGfsiglerL~~~l~~~~~-~~~--~~~~~~~~~VlV~s~~----------~~~l~e~l~l~~~Lw~~GI~ae 328 (328)
-.+|+++ +|++.+|.+... ... -.....+.+|+|++.+ +.....+.+|++.|+++||+|+
T Consensus 277 ~~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~ 349 (519)
T 4hvc_A 277 QNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVR 349 (519)
T ss_dssp EEEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EccccHH-HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEE
Confidence 3467777 999988765311 000 0123457899999987 2356678999999999999874
No 41
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=86.06 E-value=1.1 Score=43.98 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=29.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHh-cC-CcccchHH
Q psy13909 74 RDYGPEPMVLRKNVLEQIISVFKR-HG-AQTIDTPV 107 (328)
Q Consensus 74 rD~~p~~~~~r~~v~~~i~~~f~~-~G-~~~IdtPv 107 (328)
-||+|.-|++++.|++.++..|.. .| +.+|+||+
T Consensus 97 p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~ 132 (459)
T 3ikl_A 97 PGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH 132 (459)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS
T ss_pred cccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc
Confidence 499999999999999988888875 56 55699997
No 42
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=85.59 E-value=0.86 Score=44.42 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+..|.+|.+.+++.|.++||.+|+||++
T Consensus 134 ~~~~rs~i~~~ir~~f~~~gF~eVeTP~l 162 (434)
T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPIL 162 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcEE
Confidence 45668899999999999999999999998
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=83.74 E-value=0.41 Score=44.18 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 77 GPEPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 77 ~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
....+.+|.+|.+.+++.|.++||.+|+||++
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l 42 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVII 42 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEE
Confidence 45688999999999999999999999999987
No 44
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=83.50 E-value=1.2 Score=43.41 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|.+.+++.|..+||.+|+||++
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l 161 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKI 161 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEE
Confidence 45668899999999999999999999998
No 45
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=80.36 E-value=0.41 Score=43.64 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHHHH--HHHHhcCCcccchHHH
Q psy13909 86 NVLEQII--SVFKRHGAQTIDTPVC 108 (328)
Q Consensus 86 ~v~~~i~--~~f~~~G~~~IdtPvf 108 (328)
+|++.++ ++|++|||++|+||+|
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~l 29 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPAL 29 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred hHHHHHHHHHHHHHCCCEEecCccc
Confidence 4556666 9999999999999998
No 46
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=79.91 E-value=1.5 Score=43.00 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|.+|...+++.|..+||-+|+||++
T Consensus 156 lr~Rs~i~~~iR~ff~~~gF~EVeTPiL 183 (456)
T 3m4p_A 156 LQLRSEIQWYFRKYYHDNHFTEIQPPTI 183 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCee
Confidence 5668899999999999999999999987
No 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=77.45 E-value=5.1 Score=40.09 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=43.5
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCC
Q psy13909 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGV 119 (328)
Q Consensus 71 kGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi 119 (328)
.|+--|.|.-+.+++.+.+.+++.+.++||++|.||.++-..+++.+|-
T Consensus 265 ~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~ 313 (536)
T 3err_A 265 SRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGH 313 (536)
T ss_dssp SSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTC
T ss_pred CceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCC
Confidence 3666788999999999999999999999999999999977777777774
No 48
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=73.96 E-value=1.7 Score=42.26 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.-+.+|.+|.+.+++.|.++||.+|+||++
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil 152 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKV 152 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEE
Confidence 456779999999999999999999999998
No 49
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.06 E-value=1.1 Score=44.58 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=42.2
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 71 kGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
.|+--|.|.-+.+++.|.+.+.+.+.++||++|.||.|+-..+++.+|
T Consensus 209 ~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG 256 (501)
T 1wle_A 209 HRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCG 256 (501)
T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHT
T ss_pred CceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhc
Confidence 344555899999999999999999999999999999997777888777
No 50
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=69.63 E-value=1.3 Score=44.33 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=41.7
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 71 kGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
.|+--|.|.-+.+++.+++.+++.+.++||++|.||.|+-..++..+|
T Consensus 191 sgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG 238 (522)
T 3vbb_A 191 SRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVA 238 (522)
T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHS
T ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcC
Confidence 577778899999999999999999999999999999996666666655
No 51
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=66.77 E-value=2 Score=41.83 Aligned_cols=34 Identities=18% Similarity=0.452 Sum_probs=26.5
Q ss_pred ccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 250 GRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 250 GRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
..|+.++..+.. | -.|+.||++|+|||+.++...
T Consensus 378 ~~~~~yl~al~y-G-~PP~~G~glGiDRLvmll~g~ 411 (429)
T 1wyd_A 378 ESFEFFLKWFDY-G-MPPHAGFGMGLARLMVMLTGI 411 (429)
T ss_dssp GGGHHHHGGGGS-C-CCCEEEEEEEHHHHHHHHHCC
T ss_pred HHHHHHHHHHhc-C-CCCceEEEEcHHHHHHHHcCC
Confidence 568888887742 2 249999999999999888753
No 52
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=66.01 E-value=2.1 Score=41.72 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=25.8
Q ss_pred ccchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 250 GRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 250 GRYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
..|+.++..|.. | -.|+.||++|+|||+.++..
T Consensus 383 ~~~~~yl~al~y-G-~PP~~G~glGiDRLvmll~g 415 (434)
T 1x54_A 383 KDYEWYLDLRRY-G-SVPHSGFGLGVERLVAWVLK 415 (434)
T ss_dssp GGGHHHHHTTTS-S-CCCEEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-C-CCCceEEEEcHHHHHHHHcC
Confidence 458888887743 2 34999999999999988764
No 53
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=65.59 E-value=1.9 Score=42.64 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=41.8
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcC
Q psy13909 72 GTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCG 118 (328)
Q Consensus 72 GtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~G 118 (328)
|+--|.|.-+.+++.+.+.+++.+.++||++|.||.++-..+++.+|
T Consensus 176 g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG 222 (485)
T 3qne_A 176 RGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTA 222 (485)
T ss_dssp TCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHS
T ss_pred eeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC
Confidence 66667899999999999999999999999999999997777777777
No 54
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=65.46 E-value=2.1 Score=42.26 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|.+.+++.|..+||.+|+||++
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil 205 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKL 205 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 35678999999999999999999999998
No 55
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=64.57 E-value=2.3 Score=40.10 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
.-+.+|.+|...|++.|..+||.+|+||++
T Consensus 34 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL 63 (345)
T 3a5y_A 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCM 63 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEE
Confidence 467889999999999999999999999998
No 56
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=63.81 E-value=4.8 Score=37.90 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=23.8
Q ss_pred cch-hhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 251 RYD-KLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 251 RYD-~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
-|| .++..+.. | -.|+-||++|+|||+.++-..
T Consensus 298 ~~d~~yl~al~y-G-~PPhgG~glGiDRLvmll~g~ 331 (345)
T 3a5y_A 298 PIDQNLIEALKV-G-MPDCSGVALGVDRLVMLALGA 331 (345)
T ss_dssp CCCHHHHHHHHH-C-CCSEEEEEEEHHHHHHHHHTC
T ss_pred hHHHHHHHHHhc-C-CCCCcEEEEcHHHHHHHHcCC
Confidence 465 46665521 1 359999999999999888753
No 57
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=63.27 E-value=7.6 Score=38.66 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHHHH-Hhhhhhhh--ccCCCcceEEEEeCC----------chhHHHHHHHHHHHHHC-CCccC
Q psy13909 276 ERIFSLIE-SKLAAERT--KLRTTEVQVYVASAQ----------KNLLEERMRICSYLWKN-GINAD 328 (328)
Q Consensus 276 erL~~~l~-~~~~~~~~--~~~~~~~~VlV~s~~----------~~~l~e~l~l~~~Lw~~-GI~ae 328 (328)
+|++.++- +......- ...-.+.+|.|++.. +.....+.+|.+.|+++ ||+|+
T Consensus 275 ~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~ 341 (518)
T 3ial_A 275 TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVS 341 (518)
T ss_dssp THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEE
Confidence 99887654 33210000 123456799998876 33567788999999999 99874
No 58
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=62.61 E-value=2.6 Score=41.74 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|...+++.|..+||.+|+||++
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL 201 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMM 201 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeE
Confidence 45668899999999999999999999998
No 59
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=62.37 E-value=1.8 Score=42.33 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=44.4
Q ss_pred CCCee-EEeeeHHHHH-HHHHHhhhh-------h--------hhccCCCcceEEEE-eCC--chhHHHHHHHHHHHHHCC
Q psy13909 265 NVPCV-GISIGVERIF-SLIESKLAA-------E--------RTKLRTTEVQVYVA-SAQ--KNLLEERMRICSYLWKNG 324 (328)
Q Consensus 265 ~vPav-GfsiglerL~-~~l~~~~~~-------~--------~~~~~~~~~~VlV~-s~~--~~~l~e~l~l~~~Lw~~G 324 (328)
.+|.| ..|+|++|++ .+|++.... . .-...-.+++|+|+ +.+ +.....+.+|+++||++|
T Consensus 289 ~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~G 368 (454)
T 1g5h_A 289 VVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENG 368 (454)
T ss_dssp ECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTT
T ss_pred EeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCC
Confidence 46855 8999999996 556543110 0 00122356899999 665 556788999999999999
Q ss_pred Ccc
Q psy13909 325 INA 327 (328)
Q Consensus 325 I~a 327 (328)
|+|
T Consensus 369 i~v 371 (454)
T 1g5h_A 369 ISV 371 (454)
T ss_dssp CCE
T ss_pred CEE
Confidence 987
No 60
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=60.32 E-value=2.2 Score=42.15 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCC
Q psy13909 71 KGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGV 119 (328)
Q Consensus 71 kGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi 119 (328)
.|+--|.|.-+.+++.+.+.+++.+.++||++|.||.++-..++..+|-
T Consensus 198 sgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~ 246 (484)
T 3lss_A 198 GRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQ 246 (484)
T ss_dssp TTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSC
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCC
Confidence 3455667899999999999999999999999999999977777777773
No 61
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=57.64 E-value=2.6 Score=38.42 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 84 RKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 84 r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
++++.+.+++.|..+||.+|.||+|.-...++.++++.
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~ 116 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDN 116 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCc
Confidence 68999999999999999999999995555667777754
No 62
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=55.57 E-value=3.8 Score=40.63 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|...+++.|..+||.+|+||++
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL 210 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMM 210 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeE
Confidence 34568899999999999999999999998
No 63
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=54.73 E-value=4.3 Score=39.44 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|...+++.|..+||.+|+||++
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL 159 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTL 159 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeE
Confidence 45678899999999999999999999987
No 64
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=53.05 E-value=9.8 Score=36.77 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=22.8
Q ss_pred chhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 252 YDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 252 YD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
|..++..|.. | -.|+-||++|+|||+.++-..
T Consensus 373 ~~~yl~a~~y-G-~PPhgG~glGiDRLvm~l~g~ 404 (422)
T 1n9w_A 373 FHGYLEVFKY-G-MPPHGGFAIGAERLTQKLLGL 404 (422)
T ss_dssp GHHHHGGGGB-C-CCSEEEEEEEHHHHHHHHTTC
T ss_pred HHHHHHHHhc-C-CCCceEEEEcHHHHHHHHhCC
Confidence 4555555532 2 358999999999999887653
No 65
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=52.56 E-value=3.7 Score=37.64 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 84 RKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 84 r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
++++.+.+++.|..+||++|.||.|.-...++.+|.++
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~ 110 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGE 110 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCc
Confidence 58899999999999999999999996666677677654
No 66
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=51.64 E-value=9.7 Score=38.42 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|.+|...+++.|..+||-+|+||++
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL 165 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPML 165 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSS
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 4567899999999999999999999998
No 67
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=51.60 E-value=11 Score=36.52 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|.+|...+++.|..+||.+|+||++
T Consensus 137 ~~~Rs~i~~~iR~f~~~~gF~EVeTPiL 164 (438)
T 3nem_A 137 FKIRSSVFKAVRDFFHENGFIEIHTPKI 164 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 4668899999999999999999999998
No 68
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=51.40 E-value=42 Score=30.44 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=27.2
Q ss_pred cccccCccch-hhh-hhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 244 GSVAGGGRYD-KLV-GMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 244 ~sIa~GGRYD-~Lv-~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
..|++|| -. +.+ ..|| -+.|..||.+|+|||..++-.
T Consensus 228 ~eig~~G-v~p~vl~~~~g---i~~~~~gfglglerl~m~~~g 266 (288)
T 3dsq_A 228 LELASGA-MGPHFLDEKWE---IFDPWVGLGFGLERLLMIREG 266 (288)
T ss_dssp EEEEEEE-EESCTTTTTTT---CCSCEEEEEEEHHHHHHHHHT
T ss_pred EEEEEEE-ecHHHHHHhcC---CCCCeEEEEECHHHHHHHHcC
Confidence 3677777 54 444 6775 445899999999999887654
No 69
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=50.32 E-value=5.6 Score=38.73 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=21.6
Q ss_pred chhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 252 YDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 252 YD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
|+..+..+.. | -.|+-||+||+|||+..+-.
T Consensus 389 ~~~yl~a~~~-G-~pP~~G~GlGidRLvm~l~g 419 (438)
T 3nem_A 389 FEFYLKAFRY-G-MPPHGGFGLGAERLIKQMLD 419 (438)
T ss_dssp GHHHHHTTSS-C-CCCEEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHc-C-CCCceEEEEhHHHHHHHHhC
Confidence 4444544431 1 46899999999999888764
No 70
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=50.06 E-value=11 Score=38.14 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|.+|...+++.|..+||-+|+||++
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL 171 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFL 171 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSS
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 4567899999999999999999999998
No 71
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=49.87 E-value=12 Score=36.85 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=23.7
Q ss_pred cchhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 251 RYDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 251 RYD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
-|..++..|.. | -.|+-||++|+|||+.++-.
T Consensus 437 ~~~~yl~al~y-G-~PPhgG~glGiDRLvmll~g 468 (487)
T 1eov_A 437 GLKDYCDGFSY-G-CPPHAGGGIGLERVVMFYLD 468 (487)
T ss_dssp TTHHHHHHHTT-C-CCCEEEEEEEHHHHHHHHTT
T ss_pred hHHHHHHHHhc-C-CCCCeEEEEhHHHHHHHHcC
Confidence 35566666642 2 35899999999999988765
No 72
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=49.62 E-value=12 Score=37.36 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
+.+|..|...+++.|...||.+|+||++
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gF~EVeTPiL 271 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKL 271 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSB
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 5678999999999999999999999987
No 73
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=48.70 E-value=85 Score=24.52 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
+....|++|++...++|..+||..+.+ +.|-+.+||+..
T Consensus 5 ~~~~~r~~Il~aa~~l~~~~G~~~~ti-----~~Ia~~agvs~~ 43 (188)
T 3qkx_A 5 AKTDLAEQIFSATDRLMAREGLNQLSM-----LKLAKEANVAAG 43 (188)
T ss_dssp THHHHHHHHHHHHHHHHHHSCSTTCCH-----HHHHHHHTCCHH
T ss_pred cchHHHHHHHHHHHHHHHhcCcccCCH-----HHHHHHhCCCcc
Confidence 456789999999999999999998764 777888888753
No 74
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=47.69 E-value=6.5 Score=38.48 Aligned_cols=50 Identities=30% Similarity=0.614 Sum_probs=35.6
Q ss_pred EEEEEEcCCccCCccccccccC----ccchhhhhhcCCCC---------------CCCCeeEEeeeHHHHHHHHHH
Q psy13909 228 IYEAVLIGDRKKGESVGSVAGG----GRYDKLVGMFDPRQ---------------RNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 228 IFE~~~~~~~~~~~~~~sIa~G----GRYD~Lv~~f~~~g---------------~~vPavGfsiglerL~~~l~~ 284 (328)
-||.+.++ .+-||+| =+|+.|...|...| ...|+-||+||+|||+..+-.
T Consensus 369 rfdL~~~G-------~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg 437 (456)
T 3m4p_A 369 SVDLLMPG-------VGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLG 437 (456)
T ss_dssp EEEEEETT-------TEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHT
T ss_pred EEEEEeCC-------ceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcC
Confidence 48888874 3567777 46777777664222 136889999999999988764
No 75
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=47.43 E-value=49 Score=26.22 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
|..|++|++...++|..+||+.+. ++.|-+.+||+..
T Consensus 1 ~~~r~~Il~aa~~l~~~~G~~~~t-----i~~Ia~~agvs~~ 37 (194)
T 3bqz_B 1 MNLKDKILGVAKELFIKNGYNATT-----TGEIVKLSESSKG 37 (194)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCC-----HHHHHHHTTCCHH
T ss_pred CcHHHHHHHHHHHHHHHcCCccCC-----HHHHHHHhCCCch
Confidence 456889999999999999999876 4778888888753
No 76
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=45.30 E-value=15 Score=36.40 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
-+.+|.+|...+++.|...||-+|+||++
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL 203 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMM 203 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcee
Confidence 34567889999999999999999999998
No 77
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=44.50 E-value=98 Score=24.41 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
|+....|++|++...++|..+||..+.. +.|-+.+||+.
T Consensus 3 ~~~~~~r~~Il~aa~~l~~~~G~~~~t~-----~~IA~~agvs~ 41 (199)
T 3qbm_A 3 RKGQETRERVVAQAAALFNVSGYAGTAI-----SDIMAATGLEK 41 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTCCH-----HHHHHHHTCCH
T ss_pred cchhhHHHHHHHHHHHHHHHhCcCcCCH-----HHHHHHhCCCc
Confidence 3456779999999999999999998764 66777777765
No 78
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=43.12 E-value=8.9 Score=38.71 Aligned_cols=32 Identities=19% Similarity=0.462 Sum_probs=24.1
Q ss_pred chhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 252 YDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 252 YD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
|..++..|.. | -.|+-||++|+|||+.++-..
T Consensus 514 ~~~yL~al~y-G-~PPhgG~glGlDRLvmlltg~ 545 (585)
T 1c0a_A 514 FGFLLDALKY-G-TPPHAGLAFGLDRLTMLLTGT 545 (585)
T ss_dssp HHHHHHHTTT-T-CCCEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHHHHhc-C-CCCceeEEEcHHHHHHHHcCC
Confidence 5566766643 2 358999999999999988753
No 79
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=42.96 E-value=9 Score=38.66 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=24.1
Q ss_pred chhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHHh
Q psy13909 252 YDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 252 YD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~~ 285 (328)
|..++..|.. | -.|+-||++|+|||+.++-..
T Consensus 508 ~~~~L~al~y-G-~PPhgG~glGlDRLvMll~g~ 539 (580)
T 1l0w_A 508 FGFFLEALEY-G-APPHGGIAWGLDRLLALMTGS 539 (580)
T ss_dssp THHHHHHTTB-T-CCCEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHHHHhc-C-CCCCceEEEcHHHHHHHHcCC
Confidence 5567776642 2 358999999999999988753
No 80
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=42.55 E-value=77 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
++....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 7 ~~~~~~r~~Il~aA~~lf~~~G~~~~s~-----~~IA~~agvs~ 45 (212)
T 2ras_A 7 TEHDAMRARLVDVAQAIVEERGGAGLTL-----SELAARAGISQ 45 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCH-----HHHHHHHTSCH
T ss_pred ccchHHHHHHHHHHHHHHHHhCcccCcH-----HHHHHHhCCCH
Confidence 4456789999999999999999998764 55666666654
No 81
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=42.02 E-value=14 Score=36.64 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=17.6
Q ss_pred CCeeEEeeeHHHHHHHHHHh
Q psy13909 266 VPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 266 vPavGfsiglerL~~~l~~~ 285 (328)
.|+-||+||+|||+.++-..
T Consensus 469 PPhgG~glGiDRLvmlltg~ 488 (504)
T 1e1o_A 469 PPTAGLGIGIDRMIMLFTNS 488 (504)
T ss_dssp CSEEEEEEEHHHHHHHHHTC
T ss_pred CCceeEEEcHHHHHHHHhCC
Confidence 58999999999999888753
No 82
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=41.90 E-value=14 Score=36.49 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=17.9
Q ss_pred CCCeeEEeeeHHHHHHHHHHh
Q psy13909 265 NVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~ 285 (328)
-.|+-||+||+|||+.++-..
T Consensus 458 ~PPhgG~glGiDRLvmlltg~ 478 (493)
T 3a74_A 458 MPPTGGLGIGVDRLVMLLTNS 478 (493)
T ss_dssp CCSEEEEEEEHHHHHHHHHTC
T ss_pred CCCceeEEEcHHHHHHHHhCC
Confidence 358999999999999888753
No 83
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=41.57 E-value=9.1 Score=38.07 Aligned_cols=30 Identities=13% Similarity=0.402 Sum_probs=21.9
Q ss_pred hhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 253 DKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 253 D~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
...+..+.. | -.|+-||+||+|||+.++-.
T Consensus 463 ~~yl~al~y-G-~PP~gG~GlGiDRLvMlltg 492 (521)
T 3bju_A 463 ENFCTALEY-G-LPPTAGWGMGIDRVAMFLTD 492 (521)
T ss_dssp HHHHHHHTT-T-CCSEEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHhc-C-CCCceeEEEcHHHHHHHHhC
Confidence 345555532 2 35899999999999988765
No 84
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=41.28 E-value=9.3 Score=38.13 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvf 108 (328)
..+|.+|...|++.|..+||-+|+||++
T Consensus 204 fr~Rs~i~~~iR~ff~~~gFlEVeTPiL 231 (529)
T 4ex5_A 204 FRARTKAIASIRKFMGDADFMEVETPML 231 (529)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCee
Confidence 4668899999999999999999999998
No 85
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=41.09 E-value=9.7 Score=38.17 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred chhhhhhcCCCCCCCCeeEEeeeHHHHHHHHHH
Q psy13909 252 YDKLVGMFDPRQRNVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 252 YD~Lv~~f~~~g~~vPavGfsiglerL~~~l~~ 284 (328)
|+..+..+.. .-.|+-||+||+|||+.++-.
T Consensus 499 ~e~yl~al~y--G~PPhgG~GlGiDRLvMlltg 529 (548)
T 3i7f_A 499 LKDYIESFRF--GSWPHAGCGIGLERITMLYLG 529 (548)
T ss_dssp GHHHHHTTSS--CCCCEEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHhC--CCCCceEEEEcHHHHHHHHhC
Confidence 4444444432 146899999999999887764
No 86
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=40.46 E-value=51 Score=23.79 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHcCCChhhHHHHHHHh--hhhCccChHHHHHHHHHhcCCCHHHHHHHHHH
Q psy13909 112 GLFESCGVPAKQFRTICSSV--DKLDKWSWEDVRYEMTQEKGLSKIIADKIGIY 163 (328)
Q Consensus 112 ~il~~~Gi~~~~~~~i~~~i--dkldk~~~~~v~~el~~~~gL~~~~~d~L~~~ 163 (328)
.+|-.||||...-..-.... ++++..-+.++-++++.++||.+-.+=++.++
T Consensus 7 ~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 7 EFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHH
Confidence 46778999986544444333 44555445566667777788875444443333
No 87
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=40.10 E-value=22 Score=29.82 Aligned_cols=27 Identities=4% Similarity=-0.084 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCceEEEcc
Q psy13909 189 LVGLAAIKLLLSYCDIYELTDKVIFDL 215 (328)
Q Consensus 189 ~e~l~~L~~l~~~L~~~gi~~~i~fDl 215 (328)
.+..+.|.+|.+.|...||.-.+.||.
T Consensus 84 ~~Q~~~L~~ik~sL~~~gI~l~~~fs~ 110 (163)
T 4a5z_A 84 VQQSRGLQEIEESLRSHGVLLEVQYSS 110 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455678888888999999854444544
No 88
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=39.80 E-value=16 Score=35.32 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=17.9
Q ss_pred CCCeeEEeeeHHHHHHHHHHh
Q psy13909 265 NVPCVGISIGVERIFSLIESK 285 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~~ 285 (328)
-.|+-||++|+|||+.++-..
T Consensus 397 ~pPhgG~glGiDRLvmll~g~ 417 (435)
T 2xgt_A 397 TCPHGGYGLGLERFICWLTNT 417 (435)
T ss_dssp CCCEEEEEEEHHHHHHHHHTC
T ss_pred CCCCceEEEhHHHHHHHHcCC
Confidence 358999999999999888753
No 89
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=39.31 E-value=1.2e+02 Score=24.09 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~-----~~Ia~~agvs~ 50 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTT-----REIAASLDMSP 50 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCH-----HHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCH-----HHHHHHhCCCc
Confidence 44678999999999999999998764 66667777754
No 90
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=38.47 E-value=17 Score=36.17 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.4
Q ss_pred CCCeeEEeeeHHHHHHHHHH
Q psy13909 265 NVPCVGISIGVERIFSLIES 284 (328)
Q Consensus 265 ~vPavGfsiglerL~~~l~~ 284 (328)
-.|+-||+||+|||+.++-.
T Consensus 493 ~PP~gG~GlGiDRLvMlltg 512 (529)
T 4ex5_A 493 MPPTGGCGIGIDRLVMLLTD 512 (529)
T ss_dssp CCCEEEEEEEHHHHHHHHHT
T ss_pred CCCCcEEEEeHHHHHHHHcC
Confidence 35899999999999988775
No 91
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=37.93 E-value=24 Score=31.80 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHcCCCceEEEccC
Q psy13909 191 GLAAIKLLLSYCDIYELTDKVIFDLS 216 (328)
Q Consensus 191 ~l~~L~~l~~~L~~~gi~~~i~fDls 216 (328)
-.+.|.+|.+.|...||.-.+.||.+
T Consensus 174 q~~~l~~ik~sl~~~gi~~~~~~~~t 199 (257)
T 2ymb_A 174 QSRGLQEIEESLRSHGVLLEVQYSSS 199 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 45577888888999998544555443
No 92
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=37.31 E-value=41 Score=27.58 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
+.....|++|++...++|..+||..+.. +.|-+.+||+.
T Consensus 24 ~r~~~~r~~Il~aa~~lf~~~G~~~~tv-----~~IA~~agvs~ 62 (215)
T 2qko_A 24 AQNPERRAALVNAAIEVLAREGARGLTF-----RAVDVEANVPK 62 (215)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCTTTCCH-----HHHHHHSSSTT
T ss_pred cccHHHHHHHHHHHHHHHHHhChhhccH-----HHHHHHcCCCc
Confidence 4456789999999999999999998764 66677777764
No 93
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=36.95 E-value=1.1e+02 Score=24.69 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
....|++|++...++|..+||..+.+ +.|.+.+||+.
T Consensus 7 ~~~~r~~Il~aA~~lf~~~G~~~~t~-----~~Ia~~Agvs~ 43 (204)
T 3anp_C 7 KKRRRERIFRAAMELFRNRGFQETTA-----TEIAKAAHVSR 43 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccH-----HHHHHHcCCch
Confidence 34678999999999999999998764 66666677754
No 94
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=36.79 E-value=1.2e+02 Score=24.20 Aligned_cols=36 Identities=17% Similarity=0.423 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|.+.+||+.
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~-----~~Ia~~agvs~ 48 (203)
T 3ccy_A 13 ENIRDTIIERAAAMFARQGYSETSI-----GDIARACECSK 48 (203)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTTSCH-----HHHHHHTTCCG
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCH-----HHHHHHhCCCc
Confidence 3568999999999999999998764 77777888765
No 95
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=35.58 E-value=1.4e+02 Score=23.90 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
+....|++|++...++|..+||..+.+ +.|.+.+||+.
T Consensus 28 ~~~~~r~~Il~aa~~l~~~~G~~~~tv-----~~Ia~~agvs~ 65 (218)
T 3dcf_A 28 TGNDRRTQIIKVATELFREKGYYATSL-----DDIADRIGFTK 65 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCH-----HHHHHHHTCCH
T ss_pred CccchHHHHHHHHHHHHHHcCcccCcH-----HHHHHHhCCCH
Confidence 344679999999999999999998764 66667777765
No 96
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=34.81 E-value=44 Score=26.41 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
|+....|++|++...++|..+||..+.. +.|-+.+||+.
T Consensus 4 ~k~~~~r~~Il~aa~~l~~~~G~~~~ti-----~~Ia~~agvs~ 42 (194)
T 2g7s_A 4 KNPQSKADDILQCARTLIIRGGYNSFSY-----ADISQVVGIRN 42 (194)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHCCCH
T ss_pred CchhhhHHHHHHHHHHHHHHcCcccCCH-----HHHHHHhCCCc
Confidence 4567889999999999999999998764 66777777765
No 97
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=33.96 E-value=1.7e+02 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 14 ~~~~~r~~Il~aa~~l~~~~G~~~~s~-----~~Ia~~agvs~ 51 (206)
T 3kz9_A 14 SPLKRKQQLMEIALEVFARRGIGRGGH-----ADIAEIAQVSV 51 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSSCCH-----HHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHHHhcCcccccH-----HHHHHHhCCCH
Confidence 355679999999999999999998764 66667777765
No 98
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=33.95 E-value=84 Score=24.67 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
....|++|++...++|..+||..+.. +.|-+.+||+.
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti-----~~Ia~~agvs~ 44 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGVST-----TKVAKRVGIAQ 44 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCH-----HHHHHHhCCcH
Confidence 35678999999999999999988764 77778888865
No 99
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=31.87 E-value=71 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
|.....|++|++...++|..+||..+.. +.|-+.+||+.
T Consensus 19 ~r~~~~r~~Il~aA~~lf~~~G~~~~t~-----~~IA~~agvs~ 57 (214)
T 2zb9_A 19 RPAEEVRAEVLHAVGELLLTEGTAQLTF-----ERVARVSGVSK 57 (214)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHCCCH
T ss_pred CccHHHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHHCCCH
Confidence 4566789999999999999999998764 56666666654
No 100
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=30.68 E-value=30 Score=35.14 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHH-hcCCcccchHHH
Q psy13909 81 MVLRKNVLEQIISVFK-RHGAQTIDTPVC 108 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~-~~G~~~IdtPvf 108 (328)
+.+|.+|...+++.|. .+||-+|+||++
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL 176 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTL 176 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCee
Confidence 3557899999999996 799999999998
No 101
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=30.48 E-value=90 Score=24.46 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
|.....|++|++...++|..+||..+.. +.|-+.+||+.
T Consensus 4 ~~~~~~r~~Il~aa~~l~~~~G~~~~t~-----~~Ia~~agvs~ 42 (195)
T 3pas_A 4 QRDDSKRIAFLEATVREVADHGFSATSV-----GKIAKAAGLSP 42 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCH-----HHHHHHHTSCH
T ss_pred cchhHHHHHHHHHHHHHHHHcChHhcCH-----HHHHHHhCCCc
Confidence 3456789999999999999999987654 66677777765
No 102
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=30.32 E-value=1.5e+02 Score=23.91 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 7 ~~~r~~Il~aA~~lf~~~Gy~~~s~-----~~IA~~AGvs~ 42 (206)
T 1vi0_A 7 RPKYMQIIDAAVEVIAENGYHQSQV-----SKIAKQAGVAD 42 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHTSCH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHhCCCh
Confidence 3568999999999999999997764 66666777754
No 103
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=30.09 E-value=1.7e+02 Score=23.59 Aligned_cols=38 Identities=8% Similarity=0.220 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.....|++|++...++|..+||....+ +.|-+.+||+.
T Consensus 9 r~~~~r~~Il~aA~~lf~~~G~~~ts~-----~~IA~~aGvsk 46 (211)
T 3bhq_A 9 RSARKDREIIQAATAAFISKGYDGTSM-----EEIATKAGASK 46 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTCCH-----HHHHHHHTCCH
T ss_pred ccHhHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHhCCCH
Confidence 446778999999999999999997654 66666677754
No 104
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=29.82 E-value=1.7e+02 Score=23.44 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|.+.+||+.
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti-----~~Ia~~agvs~ 45 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTM-----NEIASDVGMGK 45 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCH-----HHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCH-----HHHHHHhCCCH
Confidence 3568999999999999999987764 66777777765
No 105
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=29.67 E-value=1.7e+02 Score=22.64 Aligned_cols=36 Identities=6% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~-----~~IA~~agvs~ 44 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSF-----KDIATAINIKT 44 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHTCCH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHhCCCc
Confidence 3578999999999999999998764 66677777765
No 106
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=29.48 E-value=32 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHcCCCh
Q psy13909 84 RKNVLEQIISVFKRHGAQTIDTPVCLL-DGLFESCGVPA 121 (328)
Q Consensus 84 r~~v~~~i~~~f~~~G~~~IdtPvfil-~~il~~~Gi~~ 121 (328)
...+.+.|++.|...||.++.+|.+-- ..-|+.+++|.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~ 141 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPE 141 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCC
Confidence 677888999999999999999986522 22356677764
No 107
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=29.39 E-value=1.1e+02 Score=30.29 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHHHHHH-HHHcCCCceEEEccCCccCCccccceEEEEEEcCC-----c-cCCccccccccCccch-hhhhhcCCCC
Q psy13909 192 LAAIKLLLSY-CDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGD-----R-KKGESVGSVAGGGRYD-KLVGMFDPRQ 263 (328)
Q Consensus 192 l~~L~~l~~~-L~~~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~-----~-~~~~~~~sIa~GGRYD-~Lv~~f~~~g 263 (328)
..+++.+++. ++.+|+. .+.|-++-.+.-.|+-|.-+|++.... . ..+++--.|++-|.+. .++..||
T Consensus 243 f~dLKgilE~LL~~LGi~-~~r~~~~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~g--- 318 (534)
T 2du3_A 243 VDDGKAVAEALLRQFGFE-NFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYD--- 318 (534)
T ss_dssp HHHHHHHHHHHHGGGTCC-EEEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTT---
T ss_pred HHHHHHHHHHHHHHcCCC-eEEEEECCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcC---
Confidence 3455544433 3556874 466665532211255566677766210 0 0000102577888887 5667886
Q ss_pred CCCCeeEEeeeHHHHHHHHH
Q psy13909 264 RNVPCVGISIGVERIFSLIE 283 (328)
Q Consensus 264 ~~vPavGfsiglerL~~~l~ 283 (328)
-+.|+..|.+|+|||..++.
T Consensus 319 i~~~v~afeLgLErLaMl~~ 338 (534)
T 2du3_A 319 IPYPVMNLGLGVERLAMILY 338 (534)
T ss_dssp CCSCEEEEEEEHHHHHHHHT
T ss_pred CCCcEEEEEecHHHHHHhhc
Confidence 56789999999999987643
No 108
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=29.27 E-value=2e+02 Score=22.84 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti-----~~IA~~agvs~ 48 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGL-----QEILKTSGVPK 48 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCH-----HHHHHHHTCCH
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCH-----HHHHHHhCCCh
Confidence 345778999999999999999998764 66666777764
No 109
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=29.05 E-value=1.3e+02 Score=24.19 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|.+.+||+.
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~-----~~Ia~~Agvsk 44 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASI-----SDIVKKAGTAQ 44 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHTSCH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHhCCCc
Confidence 3568999999999999999997654 66777777764
No 110
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=28.99 E-value=1.5e+02 Score=23.15 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 10 ~~~r~~il~aa~~lf~~~G~~~~tv-----~~Ia~~agvs~ 45 (196)
T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGLSM-----QKLANEAGVAA 45 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHTSCH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHhCCCc
Confidence 4468899999999999999998764 66777778765
No 111
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.90 E-value=1.9e+02 Score=22.47 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
...|++|++...++|..+||..+.. +.|-+.+||+..
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv-----~~Ia~~agvs~~ 44 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTST-----ATIAREAGVATG 44 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCH-----HHHHHHHTCCHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCH-----HHHHHHhCCChh
Confidence 3468899999999999999998764 677778888753
No 112
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=28.58 E-value=1.8e+02 Score=23.18 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~-----~~IA~~agvs~ 48 (204)
T 2ibd_A 13 SGRRTELLDIAATLFAERGLRATTV-----RDIADAAGILS 48 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCH-----HHHHHHTTSCH
T ss_pred chhHHHHHHHHHHHHHHcCchhcCH-----HHHHHHhCCCc
Confidence 4779999999999999999997654 67777778765
No 113
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=27.84 E-value=52 Score=26.08 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
|..|++|++...++|..+||..+.+ +.|.+.+||+.
T Consensus 1 ~~tr~~Il~aA~~lf~~~Gy~~~s~-----~~Ia~~agvsk 36 (179)
T 2eh3_A 1 MGTKERILEVSKELFFEKGYQGTSV-----EEIVKRANLSK 36 (179)
T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCH-----HHHHHHHTCCH
T ss_pred CcHHHHHHHHHHHHHHHcCCccCCH-----HHHHHHhCCCc
Confidence 3468999999999999999997764 66667777764
No 114
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=27.32 E-value=2.3e+02 Score=22.43 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||....+ +.|-+.+||+.
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~-----~~IA~~aGvs~ 44 (194)
T 2nx4_A 9 DERRRSITAAAWRLIAARGIEAANM-----RDIATEAGYTN 44 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCH-----HHHHHHhCCCc
Confidence 3568999999999999999997654 66667777764
No 115
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=27.19 E-value=2.2e+02 Score=22.60 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti-----~~Ia~~agvs~ 44 (216)
T 3s5r_A 8 DKNTRELLLDAATTLFAEQGIAATTM-----AEIAASVGVNP 44 (216)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHTTTCCH
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCH-----HHHHHHHCCCH
Confidence 34568999999999999999998764 66677777765
No 116
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=26.84 E-value=2e+02 Score=24.03 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
+.....|+.|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 42 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~-----~~IA~~aGvs~ 80 (245)
T 3aqt_A 42 QKREQTRARLITSARTLMAERGVDNVGI-----AEITEGANIGT 80 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCcH-----HHHHHHhCCCh
Confidence 4566789999999999999999988764 67777788765
No 117
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.60 E-value=44 Score=26.40 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
+....|++|++...++|..+||..+.. +.|-+.+|++..
T Consensus 3 ~~~~~r~~Il~aa~~l~~~~G~~~~t~-----~~Ia~~agvs~~ 41 (191)
T 1sgm_A 3 SRGDSREKILHTASRLSQLQGYHATGL-----NQIVKESGAPKG 41 (191)
T ss_dssp --CCHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHCCCSC
T ss_pred CccchHHHHHHHHHHHHHHcCccccCH-----HHHHHHHCCCch
Confidence 345678999999999999999998764 777788888753
No 118
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=26.47 E-value=23 Score=35.93 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=11.3
Q ss_pred CCeeEEeeeHHHHHHHHH
Q psy13909 266 VPCVGISIGVERIFSLIE 283 (328)
Q Consensus 266 vPavGfsiglerL~~~l~ 283 (328)
.|.-||++|+|||+.++.
T Consensus 537 pphgG~a~G~dRlvml~~ 554 (617)
T 4ah6_A 537 PPHGGIALGLDRLICLVT 554 (617)
T ss_dssp CCEEEEEEEHHHHHHHHH
T ss_pred CCCCceeecHHHHHHHHc
Confidence 456666666666666554
No 119
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=26.40 E-value=70 Score=25.63 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.....|+.|++...++|..+||..+.. +.|-+.+||+.
T Consensus 9 r~~~~r~~Il~aA~~lf~e~G~~~~t~-----~~IA~~agvsk 46 (192)
T 2fq4_A 9 RNIETQKAILSASYELLLESGFKAVTV-----DKIAERAKVSK 46 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHTCCH
T ss_pred CChHHHHHHHHHHHHHHHHcCcccccH-----HHHHHHcCCCH
Confidence 445779999999999999999998764 66666677754
No 120
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=25.50 E-value=2.4e+02 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|.+.+||+.
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti-----~~Ia~~agvs~ 48 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSDRGFHETSM-----DAIAAKAEISK 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccH-----HHHHHHhCCch
Confidence 3468999999999999999988764 66777788765
No 121
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=25.46 E-value=1.3e+02 Score=24.07 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
+.....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 22 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~-----~~Ia~~agvs~ 60 (217)
T 3mvp_A 22 ERSIEKRNKILQVAKDLFSDKTYFNVTT-----NEIAKKADVSV 60 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHTSCH
T ss_pred ccchhHHHHHHHHHHHHHHHcCccccCH-----HHHHHHhCCCh
Confidence 4567889999999999999999988764 66677777765
No 122
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=25.01 E-value=34 Score=33.41 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=41.4
Q ss_pred CCC-eeEEeeeHHHHH-HHHHHhhhhhh-------------h--ccCCCcceEEEEeCC---chhHHHHHHHHHHHHHCC
Q psy13909 265 NVP-CVGISIGVERIF-SLIESKLAAER-------------T--KLRTTEVQVYVASAQ---KNLLEERMRICSYLWKNG 324 (328)
Q Consensus 265 ~vP-avGfsiglerL~-~~l~~~~~~~~-------------~--~~~~~~~~VlV~s~~---~~~l~e~l~l~~~Lw~~G 324 (328)
.+| .+.-++|++|++ .+|++.-.... - ...-.+.+|.|+... +.....+.+|+++|+++|
T Consensus 299 ~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~G 378 (459)
T 3ikl_A 299 VVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENG 378 (459)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCSTTHHHHHHHHHHHHHHTS
T ss_pred eeeEEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCC
Confidence 356 667899999975 55654221000 0 012346777777332 456778999999999999
Q ss_pred CccC
Q psy13909 325 INAD 328 (328)
Q Consensus 325 I~ae 328 (328)
|+|+
T Consensus 379 IrV~ 382 (459)
T 3ikl_A 379 ISVW 382 (459)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 9873
No 123
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=24.76 E-value=87 Score=24.89 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 8 ~~~~~r~~Il~aA~~lf~~~G~~~~s~-----~~Ia~~agvs~ 45 (203)
T 3b81_A 8 NFNNKRTELANKIWDIFIANGYENTTL-----AFIINKLGISK 45 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSTTCCH-----HHHHHHHTCCH
T ss_pred ChHHHHHHHHHHHHHHHHHcCcccCcH-----HHHHHHhCCCc
Confidence 345689999999999999999997654 66777777765
No 124
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=23.96 E-value=1.3e+02 Score=24.87 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=30.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 77 GPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 77 ~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
-|.....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 39 ~~~~~~~r~~Il~aA~~lf~e~G~~~~t~-----~~IA~~aGvs~ 78 (236)
T 3q0w_A 39 RPSGDDRELAILATAENLLEDRPLADISV-----DDLAKGAGISR 78 (236)
T ss_dssp ---CHHHHHHHHHHHHHHHHHSCGGGCCH-----HHHHHHHTCCH
T ss_pred CCChHHHHHHHHHHHHHHHHHcCcccCCH-----HHHHHHhCCcH
Confidence 34556789999999999999999988765 55666667654
No 125
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.42 E-value=1.5e+02 Score=24.88 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
|.....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 39 ~~~~~~r~~Il~AA~~lf~~~G~~~~t~-----~~IA~~aGvs~ 77 (255)
T 3g1o_A 39 PSGDDRELAILATAENLLEDRPLADISV-----DDLAKGAGISR 77 (255)
T ss_dssp --CCHHHHHHHHHHHHHHTTSCGGGCCH-----HHHHHHHTCCH
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCccCcH-----HHHHHHhCCCH
Confidence 4556788999999999999999988765 55555666654
No 126
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=22.90 E-value=2.4e+02 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 33 ~~~~r~~Il~aA~~lf~~~G~~~~t~-----~~IA~~AGvs~ 69 (221)
T 3g7r_A 33 PSEARARLLGTATRIFYAEGIHSVGI-----DRITAEAQVTR 69 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHHCSTTSCH-----HHHHHHHTCCH
T ss_pred chhHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHhCCCH
Confidence 45689999999999999999997654 66677777765
No 127
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=22.71 E-value=92 Score=25.19 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.+..|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 8 ~~~tR~~Il~aA~~lf~~~G~~~~s~-----~~IA~~aGvs~ 44 (210)
T 3vib_A 8 ALKTKEHLMLAALETFYRKGIARTSL-----NEIAQAAGVTR 44 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHHCcCH
Confidence 45678999999999999999998764 66677777764
No 128
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=22.64 E-value=3.1e+02 Score=25.38 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHHHHH-HH-cCCCceEEEccCCccCCccccceEEEEEEcCCccCCccccccccCccch-hhhhhc-------CCC
Q psy13909 193 AAIKLLLSYC-DI-YELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYD-KLVGMF-------DPR 262 (328)
Q Consensus 193 ~~L~~l~~~L-~~-~gi~~~i~fDlsl~RgldYYTGiIFE~~~~~~~~~~~~~~sIa~GGRYD-~Lv~~f-------~~~ 262 (328)
.+|+.+++.+ +. +|....+.|.++.-. -++-|.-.++++. .+ | +--.|++-|.-. +++..| |-.
T Consensus 231 ~dLKg~le~ll~~lfG~~~~~r~rps~fP--ft~Ps~e~~i~~~-~~--g-~w~eIg~~G~VhP~Vl~~~~~~~~~~gid 304 (350)
T 1b7y_A 231 AHLKGAIYELAQALFGPDSKVRFQPVYFP--FVEPGAQFAVWWP-EG--G-KWLELGGAGMVHPKVFQAVDAYRERLGLP 304 (350)
T ss_dssp HHHHHHHHHHHHHHSCSSCCEEEEECCBT--TEEEEEEEEEEET-TT--T-EEEEEEEEEEECHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhcCCCceEEEecCCCC--CCCCccEEEEEEE-eC--C-CeEEEEEEEEEeHHHHHhhccccccCCCC
Confidence 4555444443 33 486556888875421 1122444444431 00 0 012466777776 666777 632
Q ss_pred C--CCCCeeEEeeeHHHHHHHH
Q psy13909 263 Q--RNVPCVGISIGVERIFSLI 282 (328)
Q Consensus 263 g--~~vPavGfsiglerL~~~l 282 (328)
. ...|+..|.+|+|||..+.
T Consensus 305 ~~~~~~~~~afglglerl~ml~ 326 (350)
T 1b7y_A 305 PAYRGVTGFAFGLGVERLAMLR 326 (350)
T ss_dssp CCCTTCEEEEEEEEHHHHHHHH
T ss_pred CccccceEEEEEEeHHHHHHHH
Confidence 2 2358999999999997654
No 129
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.43 E-value=3e+02 Score=21.95 Aligned_cols=37 Identities=11% Similarity=0.337 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~-----~~IA~~aGvs~ 64 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGV-----DEILKAARVPK 64 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCH-----HHHHHHHTCCH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcH-----HHHHHHhCCCc
Confidence 46779999999999999999998764 66777777765
No 130
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=22.01 E-value=2e+02 Score=22.26 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHH----------HHHHHHHHcCCChhhHHH-HHHHhhhh
Q psy13909 84 RKNVLEQIISVFKRHGAQTIDTPVC----------LLDGLFESCGVPAKQFRT-ICSSVDKL 134 (328)
Q Consensus 84 r~~v~~~i~~~f~~~G~~~IdtPvf----------il~~il~~~Gi~~~~~~~-i~~~idkl 134 (328)
-++++....+...++|-..|+|..+ ++..+++.+|++.+..+. +-..+++.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~ 71 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRA 71 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 3567778888999999999999987 456678889998765443 33334443
No 131
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=21.88 E-value=2.4e+02 Score=25.68 Aligned_cols=93 Identities=17% Similarity=0.077 Sum_probs=46.8
Q ss_pred HHHHcCCChhhHHHHHHHhhhhCccChHHHHHHHHHhcCCCHHHHHH-HHHHHhc-cCCHHH----HHHH----------
Q psy13909 113 LFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADK-IGIYVQQ-HGHKEL----VEKF---------- 176 (328)
Q Consensus 113 il~~~Gi~~~~~~~i~~~idkldk~~~~~v~~el~~~~gL~~~~~d~-L~~~~~l-~g~~~~----l~~l---------- 176 (328)
.|..||++.++....+-.+-..+...++.+. +++.++|++.+.+.+ +..+|.+ ..+++. ++.+
T Consensus 25 ~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl-~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i 103 (343)
T 3mva_O 25 NLLTMGVDIDMARKRQPGVFHRMITNEQDLK-MFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEI 103 (343)
T ss_dssp HHHHHTCCHHHHHHHCGGGGGCSCCCHHHHH-HHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHcCCCHHHHHHhCchhhccCcccHHHHH-HHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3467888766544333333222333455554 466678888655444 4455554 122221 1222
Q ss_pred ----hcccc-ccchhhhHHhHHHHHHHHHHHHHcCCCce
Q psy13909 177 ----MQDDL-LKTSKSALVGLAAIKLLLSYCDIYELTDK 210 (328)
Q Consensus 177 ----~~~~~-l~~~~~~~e~l~~L~~l~~~L~~~gi~~~ 210 (328)
...|. +..... -++|..-+++|..+|++..
T Consensus 104 ~~il~~~P~iLl~s~~----~~~l~p~v~fL~~lGl~~~ 138 (343)
T 3mva_O 104 VNILERSPESFFRSNN----NLNLENNIKFLYSVGLTRK 138 (343)
T ss_dssp HHHHHHCSHHHHSCCC----HHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHCCHHHhCCCh----HhhHHHHHHHHHHhCCCHH
Confidence 12222 111000 0378888999999999743
No 132
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=21.82 E-value=50 Score=30.66 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=36.3
Q ss_pred cccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHH-HHHHHHHcCCChhh
Q psy13909 63 VKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCL-LDGLFESCGVPAKQ 123 (328)
Q Consensus 63 ~~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfi-l~~il~~~Gi~~~~ 123 (328)
.++-..+|.+..-.. ..--...+.+.|++.|...||+++.+|.+- -..-|+.+++|.+.
T Consensus 90 e~id~TLP~~~~~~G--~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dh 149 (327)
T 3pco_A 90 ETIDVSLPGRRIENG--GLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHH 149 (327)
T ss_dssp TCCCTTSCCCCCCCC--CCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSS
T ss_pred CCCCCcCCCCCCCCC--CCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCC
Confidence 345455554422222 223356678888999999999999998751 11225667777653
No 133
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=21.74 E-value=2.9e+02 Score=21.52 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.....|++|++...++|..+||..+.+ +.|-+.+|++.
T Consensus 5 ~~~~~r~~Il~aA~~l~~~~G~~~~t~-----~~IA~~Agvs~ 42 (194)
T 3dpj_A 5 VQAQTRDQIVAAADELFYRQGFAQTSF-----VDISAAVGISR 42 (194)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHTCCH
T ss_pred chhhHHHHHHHHHHHHHHHcCcccCCH-----HHHHHHHCCCh
Confidence 345789999999999999999998764 66777777765
No 134
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=21.69 E-value=1.1e+02 Score=24.32 Aligned_cols=39 Identities=5% Similarity=0.247 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
|+....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 9 ~~~~~~r~~Il~aa~~lf~~~G~~~~tv-----~~Ia~~agvs~ 47 (195)
T 2iu5_A 9 EKSIITQKIIAKAFKDLMQSNAYHQISV-----SDIMQTAKIRR 47 (195)
T ss_dssp CTTSHHHHHHHHHHHHHHHHSCGGGCCH-----HHHHHHHTSCG
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCeeCH-----HHHHHHhCCCH
Confidence 4456789999999999999999998764 66666677654
No 135
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=21.52 E-value=1.1e+02 Score=21.88 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=36.5
Q ss_pred CCCCCccCCchhHHHHHHH--HHHHHHHHHhcCCcccchHHH--HHHHHHHHcCCC-hhhHHHHHHHhhhh
Q psy13909 69 TPKGTRDYGPEPMVLRKNV--LEQIISVFKRHGAQTIDTPVC--LLDGLFESCGVP-AKQFRTICSSVDKL 134 (328)
Q Consensus 69 ~pkGtrD~~p~~~~~r~~v--~~~i~~~f~~~G~~~IdtPvf--il~~il~~~Gi~-~~~~~~i~~~idkl 134 (328)
.|+-+.+|.|++...|-.- +....+.|..+| |+...+ +-+.-+..+||. ...+..|..+|..+
T Consensus 3 ~~~~v~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~---idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L 70 (81)
T 3bq7_A 3 KTRPVHLWGTEEVAAWLEHLSLCEYKDIFTRHD---IRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKEL 70 (81)
T ss_dssp --CCGGGCCHHHHHHHHHHTTCGGGHHHHHHTT---CCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCChhhCCHHHHHHHHHHCCCHHHHHHHHHcC---CCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHH
Confidence 3566778888877665432 233566777777 444444 334445668884 34556677776655
No 136
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=21.38 E-value=93 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.420 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti-----~~Ia~~agvs~ 51 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTM-----EGVASEAGIAK 51 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccH-----HHHHHHhCCCH
Confidence 6789999999999999999998765 55566666654
No 137
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.29 E-value=3.1e+02 Score=22.07 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||....+ +.|-+.+|++.
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~-----~~IA~~aGvs~ 43 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVTT-----RAVAEESGWST 43 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHHCCCc
Confidence 3578999999999999999997654 66666777764
No 138
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.22 E-value=1.6e+02 Score=23.35 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 80 PMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 80 ~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~t~-----~~Ia~~agvs~ 50 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDISL-----SELSLRSGLNS 50 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCCH-----HHHHHHHCCCH
T ss_pred ChhHHHHHHHHHHHHHHHcCcccccH-----HHHHHHhCCCh
Confidence 34578999999999999999988764 66677777765
No 139
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.20 E-value=2.2e+02 Score=23.30 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
++....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 36 ~r~~~~r~~Il~aA~~lf~~~G~~~~t~-----~~IA~~Agvs~ 74 (225)
T 2id3_A 36 GRTARIREAVLLAAGDALAADGFDALDL-----GEIARRAGVGK 74 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHTCCH
T ss_pred CCchHHHHHHHHHHHHHHHHhCcccCCH-----HHHHHHHCCCH
Confidence 5667789999999999999999998754 66666677764
No 140
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=21.13 E-value=1.1e+02 Score=24.22 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
+....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 9 ~~~~~r~~Il~aa~~l~~~~G~~~~t~-----~~Ia~~agvs~ 46 (202)
T 3lwj_A 9 QNKERRQKILTCSLDLFIEKGYYNTSI-----RDIIALSEVGT 46 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCH-----HHHHHHHCSCH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCH-----HHHHHHhCCCc
Confidence 345778999999999999999987764 56666677754
No 141
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=21.05 E-value=85 Score=25.05 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
...|++|++...++|..+||. + | ++.|-+.+||+..
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~-~-s----~~~IA~~agvs~~ 49 (194)
T 2q24_A 14 QRNRDKILAAAVRVFSEEGLD-A-H----LERIAREAGVGSG 49 (194)
T ss_dssp --CHHHHHHHHHHHHHHHCTT-C-C----HHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCcC-C-C----HHHHHHHhCCChH
Confidence 345899999999999999997 5 4 6888888888753
No 142
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A* 3hfb_A* 3e2t_A*
Probab=20.82 E-value=57 Score=29.99 Aligned_cols=64 Identities=13% Similarity=0.306 Sum_probs=47.5
Q ss_pred ccceeCCCCCccCCchhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH---HHHcCCChhh---HHHHHHHhhh
Q psy13909 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGL---FESCGVPAKQ---FRTICSSVDK 133 (328)
Q Consensus 64 ~~~~~~pkGtrD~~p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~i---l~~~Gi~~~~---~~~i~~~idk 133 (328)
+++.--|-|..+|.|++.+.|..|++...+.++.|-... .++++ -+.||++.+. ++.|...+.+
T Consensus 53 ~y~~g~~~p~v~YT~eE~~~W~~l~~r~~~l~~~~Ac~e------yl~gl~~L~~~~gl~~d~IPql~dvn~~L~~ 122 (301)
T 1mlw_A 53 NYKHGDPIPKVEFTEEEIKTWGTVFRELNKLYPTHACRE------YLKNLPLLSKYCGYREDNIPQLEDVSNFLKE 122 (301)
T ss_dssp HCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHHHHBCHH------HHHHHHHHHHHHTCBTTBCCCHHHHHHHHHH
T ss_pred hCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHhcCCCccCCCCHHHHHHHHHh
Confidence 445556889999999999999999999999999888765 34443 3678887643 5555555543
No 143
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.79 E-value=1.9e+02 Score=24.27 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHhHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q psy13909 7 INEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLC 46 (328)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (328)
..++......++.|-.+.+.|..+|.+-+.++.+|++++.
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666664677899999999999999988885
No 144
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.56 E-value=2.4e+02 Score=22.54 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 83 LRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 83 ~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
.|++|++...++|.++||.... ++.|.+.+||+.
T Consensus 12 ~r~~Il~aA~~lF~~~Gy~~ts-----~~~IA~~aGvsk 45 (202)
T 2i10_A 12 DDQVALQTAMELFWRQGYEGTS-----ITDLTKALGINP 45 (202)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCC-----HHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHhCcccCC-----HHHHHHHhCCCh
Confidence 3678999999999999999765 477778888875
No 145
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.53 E-value=2.6e+02 Score=22.23 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCChh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAK 122 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~~ 122 (328)
.....|++|++...++|..+||..+.+ +.|-+.+||+..
T Consensus 14 ~~~~~r~~Il~aA~~l~~~~G~~~~t~-----~~IA~~agvs~~ 52 (218)
T 3gzi_A 14 GDTQNRDKLILAARNLFIERPYAQVSI-----REIASLAGTDPG 52 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCCCH-----HHHHHHHTSCTH
T ss_pred chhHHHHHHHHHHHHHHHHCCCCcCCH-----HHHHHHhCCCHH
Confidence 345689999999999999999997754 667777888653
No 146
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=20.45 E-value=94 Score=24.16 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 79 EPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 79 ~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
+....|++|++...++|..+||..+.+ +.|-+.+||+.
T Consensus 9 r~~~tr~~Il~aa~~l~~~~G~~~~tv-----~~Ia~~agvs~ 46 (177)
T 3kkc_A 9 QIQKTKVAIYNAFISLLQENDYSKITV-----QDVIGLANVGR 46 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCTTTCCH-----HHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHhhH-----HHHHHHhCCcH
Confidence 445678999999999999999998764 56666677654
No 147
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=20.41 E-value=1.7e+02 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 81 MVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 81 ~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
...|++|++...++|..+||..+.. +.|-+.+||+.
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~-----~~Ia~~agvs~ 42 (206)
T 3dew_A 7 ADCRSRLMEVATELFAQKGFYGVSI-----RELAQAAGASI 42 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCH-----HHHHHHHTCCH
T ss_pred hHHHHHHHHHHHHHHhcCCcccCcH-----HHHHHHhCCCH
Confidence 3578899999999999999988764 66677777765
No 148
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=20.36 E-value=1.1e+02 Score=24.34 Aligned_cols=39 Identities=13% Similarity=0.314 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCCCh
Q psy13909 78 PEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPA 121 (328)
Q Consensus 78 p~~~~~r~~v~~~i~~~f~~~G~~~IdtPvfil~~il~~~Gi~~ 121 (328)
+.....|++|++...++|..+||..+. ++.|-+.+||+.
T Consensus 16 ~~~~~~r~~Il~aA~~l~~~~G~~~~t-----~~~Ia~~agvs~ 54 (203)
T 3mnl_A 16 EAQRERRKRILDATMAIASKGGYEAVQ-----MRAVADRADVAV 54 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHTCCH
T ss_pred cCchHHHHHHHHHHHHHHHHcCCccCC-----HHHHHHHcCCCh
Confidence 456677999999999999999998765 467777888865
Done!