RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13909
(328 letters)
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 224 bits (573), Expect = 4e-70
Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L G F+S + Q ++ S +D L+K V+ E+ ++G++ KI +V+ G
Sbjct: 189 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELE-KEGINPEQTQKIIDFVKIDG 247
Query: 169 HKELVEKFMQ--DDLLKTSKSALVGLAAIKLLLSYCDIYELTDK-VIFDLSLARGLDYYT 225
+ V ++ L S+ +G++ ++ +++ + DK DL++ARGL+YYT
Sbjct: 248 SVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYT 307
Query: 226 GIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
G +YE LIG E++GS+ GGRY++LVG F +P VGISIG+ R+ S +
Sbjct: 308 GTVYETTLIG----HEALGSICSGGRYEELVGTFIG--EKMPGVGISIGLTRLISRLLKA 361
Query: 286 LAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
L T QV V + Q L+ +++ L + G+N
Sbjct: 362 --GILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVI 402
Score = 63.1 bits (154), Expect = 3e-11
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
K+ TP G ++ P L +L+ I V++ +G I+TP
Sbjct: 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPA 52
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 220 bits (563), Expect = 1e-68
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 19/220 (8%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+L + E GV + +F +C VDK++K E+V ++ GL + D I +
Sbjct: 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLA-VLGLEPTVVDAITTTLSLKS 250
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
E+ ++ + ++ + Y D V+FD S+ RGL YYTGI+
Sbjct: 251 IDEIAQR---------VGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIV 301
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAA 288
+E + ++ GGGRYD L+ + +PC G G I L++ K
Sbjct: 302 FEGFD-----REGKFRALCGGGRYDNLLTTYGSPT-PIPCAGFGFGDCVIVELLQEK--- 352
Query: 289 ERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
V V +++ + + L G +AD
Sbjct: 353 RLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSAD 392
Score = 61.1 bits (149), Expect = 1e-10
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+ + +G RD+ PE M R+++ + + K G + D PV
Sbjct: 26 MVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPV 69
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 159 bits (405), Expect = 3e-46
Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 17/191 (8%)
Query: 107 VCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQE------KGLSKIIADKI 160
L+ L ++ G+ A R + + + + ++ + L+ A++
Sbjct: 189 ARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERD 248
Query: 161 GIYVQQHGHKELVEKFMQDD-LLKTSKSALVGLAAIKLLLSYCDIYEL-TDKVIFDLSLA 218
+ +E ++D + + + L L +D V FDL+L
Sbjct: 249 AAKRSREASDRELEALLRDAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALH 308
Query: 219 RGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERI 278
R LDYYTG+++E +A GGRYD+L+ F P VG + VER+
Sbjct: 309 RELDYYTGLVFEMFA------PGVGAPIAQGGRYDELLAQFG---AGAPAVGFAFEVERV 359
Query: 279 FSLIESKLAAE 289
+++E++ E
Sbjct: 360 MAVLEAQEEGE 370
Score = 59.3 bits (144), Expect = 4e-10
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 62 QVKLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
V+ P G +D P+ R+ V +++S + G + + + +
Sbjct: 18 AVRGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGL 63
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 131 bits (333), Expect = 3e-35
Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 23/220 (10%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
+++ + + ++ S +D+ K S E+ ++ + G+ + I G
Sbjct: 167 IMEEIIGGMT--SSDPFSVFSIIDRYHKISREEFVDQL-RSAGIGEDGVSMIADLCS--G 221
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
+ + D++ + + + +A + + Y + V +D S+ RGL YYTGI+
Sbjct: 222 TRGI------DEMARITGKSSEEIARMAAVEDLLASYGV-KNVRYDFSIVRGLSYYTGIV 274
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAA 288
+EA + ++ GGGRYD L + +VP VG +G I L++
Sbjct: 275 FEAYD-----RSGQFRAILGGGRYDNLASLMS--GESVPAVGFGMGDAVISLLLK----R 323
Query: 289 ERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
E ++ + VY+ K L + G+N
Sbjct: 324 ENVQIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNVT 363
Score = 51.8 bits (125), Expect = 1e-07
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+L ++ +G RD+ PE M + K + + + G + ID P
Sbjct: 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPS 46
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 128 bits (323), Expect = 4e-34
Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 23/220 (10%)
Query: 109 LLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHG 168
++ L ++ + + + + + E + LS I ++ + G
Sbjct: 170 YVNALLMDVVGNEQRADRLRRFLYEKNYVGYR----EHVKSLNLSTIDKSRLMNLLSLRG 225
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGII 228
+ +E+ L ++ LA + L + Y ++ V FDL+L + YYTG++
Sbjct: 226 GRAAIEEARG---LIQTEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVV 282
Query: 229 YEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAA 288
+E + GGRYD+L+ F R G + ++ + + ++ +
Sbjct: 283 FEGYG------NRLGVPLCSGGRYDELLSKFH---RPAQATGFGVRIDLLVEALNGEIIS 333
Query: 289 ERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
+ E + + NG
Sbjct: 334 NGHE-------QTCILFSNERRFEAIELARKKRANGEAVV 366
Score = 48.4 bits (116), Expect = 1e-06
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQ 123
+ P G RD PE +KN+ +Q+ G I+TP E
Sbjct: 7 PFMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPT------LEY------- 53
Query: 124 FRTICSSVDKLDK--WSWED-------VRYEMT 147
+ T+ LD+ + D +R +MT
Sbjct: 54 YETVGVVSAILDQQLFKLLDQQGNTLVLRPDMT 86
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 83.1 bits (206), Expect = 3e-18
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 198 LLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVG 257
L + + + +I DL + +DYYT ++++A + + GGRYD+L+
Sbjct: 259 LKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSA------ANQPILSGGRYDQLLS 312
Query: 258 MFDPRQRNVPCVGISIGVERIFSLIESK 285
F +G ++ I +E +
Sbjct: 313 NFQE---EAFAIGFCCHMDTILKALERQ 337
Score = 40.3 bits (95), Expect = 6e-04
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
K+ P+ + + + + + ++ +F Q + P
Sbjct: 19 KINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPS 62
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 77.8 bits (192), Expect = 1e-16
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 30/170 (17%)
Query: 107 VCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQ 166
+ + L + +P + + +D + E ++ K + +KI
Sbjct: 132 TGVYEDLLK--EIPKDLHEKVLNLIDTKNLAEIE----FLSHMKKIDLSRVEKI------ 179
Query: 167 HGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTG 226
E + LKT L + S+ T V DL+LAR ++ Y G
Sbjct: 180 ---IEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFPTVSVEIDLTLARTIEEYCG 236
Query: 227 IIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVE 276
+I+ VA GG Y VG SI +E
Sbjct: 237 LIFTIYDTSSS------RLVAAGGEYTVNGE---------KGVGGSIFLE 271
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 73.8 bits (182), Expect = 7e-15
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 217 LARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVE 276
L RGLDYYT +E ++ G ++ ++ GGGRY+ L+ + D +G ++ +E
Sbjct: 255 LVRGLDYYTHTAFELMMDNPNYDG-AITTLCGGGRYNGLLELLDGPS--ETGIGFALSIE 311
Query: 277 RIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
R+ +E + +++ + +++ ++L NGI AD
Sbjct: 312 RLLLALE---EEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD 360
Score = 36.4 bits (85), Expect = 0.009
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+K P+GT+D PE + + Q+ + + + I TP+
Sbjct: 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPI 42
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 71.5 bits (176), Expect = 5e-14
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 193 AAIKLLLSYCDI-YELTDKVIFDLSLARGLDYYTGIIYEAV--LIGDRKKGESVGSVAGG 249
++ LL ++ + + + L RGLDYY ++E V +G + G+VA G
Sbjct: 265 EGLQRLLKANNVPFTI------NPRLVRGLDYYNLTVFEWVTDKLG------AQGTVAAG 312
Query: 250 GRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEVQVYVASAQKNL 309
GRYD L+ + G ++G+ERI L++ E V VYV
Sbjct: 313 GRYDPLIEQLGGKP--TAACGWAMGIERILELLK----EEHLVPEQEGVDVYVVHQGDAA 366
Query: 310 LEERMRICSYLWKNGINAD 328
E+ + L G++
Sbjct: 367 REQAFIVAERLRDTGLDVI 385
Score = 36.1 bits (84), Expect = 0.012
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 66 TLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
L KG D P+ L + + S+ + +G Q I TP+
Sbjct: 31 KLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPI 72
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 66.8 bits (164), Expect = 2e-12
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 217 LARGLDYYTGIIYEAV--LIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIG 274
L RGLDYY ++E V +G S G+V GGRYD LV R P VG ++G
Sbjct: 256 LVRGLDYYNRTVFEWVTNSLG------SQGTVCAGGRYDGLVEQLGGRA--TPAVGFAMG 307
Query: 275 VERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKN--GINAD 328
+ER+ L++ A V +Y+ ++ + M + L G+
Sbjct: 308 LERLVLLVQ---AVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLM 360
Score = 36.8 bits (86), Expect = 0.008
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 66 TLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
++ +G DY P + + + + +V +G I P+
Sbjct: 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPI 44
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 65.7 bits (161), Expect = 4e-12
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 217 LARGLDYYTGIIYEAV--LIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIG 274
L RGLDYY +E IG + ++ GGGRYD L + + VP VG + G
Sbjct: 257 LVRGLDYYVRTAFEVHHEEIG------AQSALGGGGRYDGLSELLGGPR--VPGVGFAFG 308
Query: 275 VERIFSLIESKLAAERTKLRTTEVQVYVASAQKNLLEERMRICSYLWKNGINAD 328
VER+ +E A +Y+ + + E + L + A+
Sbjct: 309 VERVALALE---AEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRP-RLRAE 358
Score = 37.5 bits (88), Expect = 0.004
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 66 TLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
T + +GT+D + + + + ++ V + GA + TP+
Sbjct: 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPI 43
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 47.8 bits (113), Expect = 8e-08
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 2 DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYD 61
+R + +K Q + +R LK I ++E+ KL +LK++L
Sbjct: 10 ERAALEELVKLQGERVRGLKQQKASAELI-EEEVAKLLKLKAQLGPDE-----------S 57
Query: 62 QVKLTLKTPKGTRDYG 77
+ K LKTPK G
Sbjct: 58 KQKFVLKTPKSGPSSG 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-07
Identities = 44/276 (15%), Positives = 85/276 (30%), Gaps = 92/276 (33%)
Query: 82 VLRKNVLEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVD-KLDKWSWE 140
++ N + I F + I + +FE+ + I ++ +++
Sbjct: 1664 IVINNPVNLTI-HFGGEKGKRIRENYSAM--IFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 141 DVRYEM-----TQ------EKGLSKIIADKIGIYVQQH---GHK--ELVEKFMQDDLLKT 184
+ + TQ EK + + K G+ GH E
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAGHSLGEY------------ 1767
Query: 185 SKSALVGLAAIKLLLSYCDIYELTD--KVIFDLSLARGLDYYTGIIYEAVLIGDRKKGES 242
+AL LA D+ + +V+F RG+ + AV + E
Sbjct: 1768 --AALASLA---------DVMSIESLVEVVF----YRGM-----TMQVAV-----PRDE- 1801
Query: 243 VGSVAGGGRYDKLVGMF--DPRQRNVPCVGISIGVERIFSLIESKLAAERTKLRTTEV-- 298
G Y GM +P + V S E + ++E ++ T +
Sbjct: 1802 ----LGRSNY----GMIAINPGR-----VAASFSQEALQYVVE-RVGKR-----TGWLVE 1842
Query: 299 --------QVYVASAQKNLLEERMRICSYLWKNGIN 326
Q YVA+ L+ + +++ I+
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Score = 32.3 bits (73), Expect = 0.25
Identities = 51/258 (19%), Positives = 81/258 (31%), Gaps = 89/258 (34%)
Query: 106 PVCLLDGLFE-SCGVP------AKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIAD 158
P+ L G E VP A Q + ++ +K E ++ +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQ------EQFNKILPEPTEGFAADDEPTTPA--- 58
Query: 159 KIGIYVQQHGHKELVEKFMQ--DDLLKTSKSALVGLAAIKLLLSYCDIYE---LTDKVIF 213
ELV KF+ L++ SK + L L+ +E L
Sbjct: 59 ------------ELVGKFLGYVSSLVEPSKVGQF-DQVLNLCLTE---FENCYLEGN--- 99
Query: 214 DL-SLARGLDYYTG--------II---YEAVLIGDR---KKGESV-------GSVA---- 247
D+ +LA L +I A ++ R KK S G+
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 248 -GG-G---RY-DKLVGMFDPRQRNVPCVG--ISIGVERIFSLIESKLAAER--TK----- 292
GG G Y ++L ++ VG I E + LI + L AE+ T+
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 293 --LRTTEV---QVYVASA 305
L + Y+ S
Sbjct: 217 EWLENPSNTPDKDYLLSI 234
Score = 28.1 bits (62), Expect = 4.8
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 1 MDRL-RIINEIKEQRDVIRKLKDLVPPNIEIMKKEM 35
+D + ++N IK Q+ I +L+ ++E ++ +
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQ--KSLSLEEVEGHL 1895
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 43.7 bits (103), Expect = 4e-05
Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 19/126 (15%)
Query: 29 EIMKKEMDKLKELKSKLCR-TTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPEPMVLRKNV 87
+ K + D+L+ L + + N+ ++E + L + K + E
Sbjct: 25 ALTKSQTDRLEVLLNPKDEISLNSGKPFRELESE---LLSRRKKDLQQIYAEERENYLGK 81
Query: 88 LEQIIS-VFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSW---EDV- 142
LE+ I+ F G I +P+ + E G+ + +L K + ++
Sbjct: 82 LEREITRFFVDRGFLEIKSPILIPLEYIERMGID---------NDTELSKQIFRVDKNFC 132
Query: 143 -RYEMT 147
R +T
Sbjct: 133 LRPMLT 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 5e-04
Identities = 33/270 (12%), Positives = 75/270 (27%), Gaps = 83/270 (30%)
Query: 9 EIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLK 68
E E + + KD++ + D C+ DV+ D K L
Sbjct: 10 ETGEHQ---YQYKDILSVFEDAFVDNFD---------CK---------DVQ-DMPKSILS 47
Query: 69 TPKGTRDYGPEPMVLRKNVLEQ---IISVFKRHGAQTIDTPV---------CLLDGLFES 116
+ + +++ K+ + + + + V L+ +
Sbjct: 48 ----KEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 117 CGVPAKQFRTICSSVDKLDKWSWEDVR----YEMTQEKGLSKIIA----DKIGIYVQQHG 168
P+ R D+L + D + Y +++ + K+ + V G
Sbjct: 102 QRQPSMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 169 HKELVEKFMQDDLLKTSKSALVGLAA--IKLL-----------LSYCDIYELTDKVI--- 212
+ L + K+ + K+ L C+ E +++
Sbjct: 158 --------V----LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 213 ---FDLSLARGLDYYTGIIYEAVLIGDRKK 239
D + D+ + I I +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Score = 31.7 bits (71), Expect = 0.36
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 48/166 (28%)
Query: 165 QQHGHKELVEKFMQD--------DLLKTSKSALVGLAAIKLLLSYCDIYELTDKV----- 211
Q+ +K+++ F D+ KS L I I D V
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEID------HIIMSKDAVSGTLR 66
Query: 212 IFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMF--DPRQRNVPCV 269
+F L++ ++ + V R Y L+ + RQ ++
Sbjct: 67 LFWTLLSKQ----EEMVQKFVEEVLRIN------------YKFLMSPIKTEQRQPSMMTR 110
Query: 270 GISIGVERIFSLIE--SKLAAERTKLRTTEVQVYVASAQKNLLEER 313
+R+++ + +K R + ++ LLE R
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQP--------YLKLRQALLELR 148
Score = 29.8 bits (66), Expect = 1.7
Identities = 44/290 (15%), Positives = 73/290 (25%), Gaps = 125/290 (43%)
Query: 7 INEIKEQRDVIRKLKDL-----------------VPPNIEIMKKEMDKL---KELKSKL- 45
+ V+ L+ L + I ++ E+ +L K ++ L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 46 -----------------CRTTNTT-----------VEEHDVEYDQVKLTLKTPKGTRDY- 76
C+ TT + D +TL TP +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLL 307
Query: 77 ----GPEPMVLRKNVLE------QIISVFKRHGAQTIDT-------------PVCL--LD 111
P L + VL II+ R G T D L L+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 112 -----GLFESCGV-------PAKQFRTICSSVDKLDKWSWEDVRYEMTQE---KGLSKII 156
+F+ V P + + W DV K +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTI---LLS----LI----WFDVIKSDVMVVVNKLHKYSL 416
Query: 157 ADK------IGIY-----VQQHG------HKELVE------KFMQDDLLK 183
+K I I ++ H+ +V+ F DDL+
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 37.3 bits (86), Expect = 0.006
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 10 IKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEYDQVKL--TL 67
+++Q D++RKLK+ P +++ K + +LK K L ++ D D+ K+ TL
Sbjct: 17 VRQQGDLVRKLKEDKAPQVDV-DKAVAELKARKRVL-EAKELALQPKDDIVDRAKMEDTL 74
Query: 68 K-----TP--------KGTRDYGPEPMVLRKNVLEQIISVF-KRHGAQTIDTPV 107
K G D+GP L+ N+++ F + ID +
Sbjct: 75 KRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTM 128
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 33.4 bits (76), Expect = 0.008
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 2 DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTT 49
D L + N + Q DV+R+LK P ++ + +L LK++ T
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAKKAPKEDV-DAAVKQLLSLKAEYKEKT 47
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 33.1 bits (75), Expect = 0.017
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 2 DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTN 50
+++E+ +Q +++R+LK E+ E+ KL +LK +L
Sbjct: 14 QIQALMDEVTKQGNIVRELKAQKADKNEV-AAEVAKLLDLKKQLAVAEG 61
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 32.6 bits (74), Expect = 0.018
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 6 IINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNT 51
+ ++I Q +V+RKLK P ++ + ++ L LK++ T
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKV-TEAVECLLSLKAEYKEKTGK 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.36
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 30/58 (51%)
Query: 34 EMDKLKELKSKLCRTTNTTVEEHDVEYDQVKLTLKTPKGTRDYGPE--PMVLRKNVLE 89
E LK+L++ L KL Y + P + K +E
Sbjct: 18 EKQALKKLQASL------------------KL----------YADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 1.7
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 32 KKEMDKLK-ELK-----SKLCRTTNTTVE 54
K+ + KL+ LK S T+E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 2.3
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 8 NEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTTNTTVEEHDVEY 60
+ ++ V K VPP I I+ EL ++ ++
Sbjct: 125 SSEVKENSVDSDDKAKVPPLIRIVSGL-----ELSDT---------KQKGKKF 163
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 27.1 bits (61), Expect = 8.9
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 203 DIYELTDKVIFDLSLARGL----DYYTGIIYEA 231
+I E +K+ D ++ + D+Y+GI++ A
Sbjct: 291 EIAERIEKLGVDTFGSKHIYPNTDFYSGIVFYA 323
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 27.1 bits (61), Expect = 9.5
Identities = 6/33 (18%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 203 DIYELTDKVIFDLSLARGL----DYYTGIIYEA 231
+I E ++++ + +G+ DY++G+++
Sbjct: 284 EIAERLERLVEEYLSKKGISINVDYWSGLVFYG 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,098,403
Number of extensions: 314331
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 48
Length of query: 328
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 234
Effective length of database: 4,077,219
Effective search space: 954069246
Effective search space used: 954069246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)