RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13909
(328 letters)
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 90.4 bits (223), Expect = 3e-21
Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 10/168 (5%)
Query: 122 KQFRTICSSVDKLDKWSWEDVRYEM--TQEKGLSKIIADKIG--IYVQQHGHKELVEKFM 177
+ + S D D+ + E+ + LS+ +++ E + +
Sbjct: 157 RLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALL 216
Query: 178 QDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDR 237
++ ++ L A L + L+ + +L RGLDYY +E
Sbjct: 217 KELGVRPMLDFLGEEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHH---- 272
Query: 238 KKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
++ + ++ GGGRYD L + VP VG + GVER+ +E++
Sbjct: 273 EEIGAQSALGGGGRYDGLSELLG--GPRVPGVGFAFGVERVALALEAE 318
Score = 56.9 bits (136), Expect = 7e-10
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 66 TLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
T + +GT+D + + + + ++ V + GA + TP+
Sbjct: 1 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPI 42
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 89.0 bits (219), Expect = 7e-21
Identities = 40/197 (20%), Positives = 64/197 (32%), Gaps = 20/197 (10%)
Query: 89 EQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQ 148
E I+ + A I V L S A + + +++ + ED + M
Sbjct: 140 ELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYT 199
Query: 149 EKGLSKIIADKIGIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELT 208
+ E + L + +
Sbjct: 200 NPLRVLDSKNP--------------EVQALLNDAPALGDYLDEESREHFAGLCKLLESAG 245
Query: 209 DKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPC 268
+ L RGLDYY ++E V S G+V GGRYD LV R P
Sbjct: 246 IAYTVNQRLVRGLDYYNRTVFEWVT----NSLGSQGTVCAGGRYDGLVEQLGG--RATPA 299
Query: 269 VGISIGVERIFSLIESK 285
VG ++G+ER+ L+++
Sbjct: 300 VGFAMGLERLVLLVQAV 316
Score = 53.5 bits (127), Expect = 9e-09
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
++ +G DY P + + + + +V +G I P+
Sbjct: 2 IQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPI 42
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 88.5 bits (218), Expect = 1e-20
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 201 YCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFD 260
+ +L D +L RGLDYYT +E ++ G ++ ++ GGGRY+ L+ + D
Sbjct: 239 KAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDG-AITTLCGGGRYNGLLELLD 297
Query: 261 PRQRNVPCVGISIGVERIFSLIESK 285
+ +G ++ +ER+ +E +
Sbjct: 298 G--PSETGIGFALSIERLLLALEEE 320
Score = 54.6 bits (130), Expect = 5e-09
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 67 LKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV-----CLLDGLFESCGVPA 121
+K P+GT+D PE + + Q+ + + + I TP+ G+ +S V
Sbjct: 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQ 61
Query: 122 KQFRTICSSVDKLDKW 137
K+ T D+
Sbjct: 62 KEMYTFKDKGDRSITL 77
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 87.8 bits (216), Expect = 2e-20
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 201 YCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGDRKKGESVGSVAGGGRYDKLVGMFD 260
+ + + +I DL + +DYYT ++++A + GGRYD+L+ F
Sbjct: 241 FSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAAN------QPILSGGRYDQLLSNFQ 294
Query: 261 PRQRNVPCVGISIGVERIFSLIESK 285
+G ++ I +E +
Sbjct: 295 ---EEAFAIGFCCHMDTILKALERQ 316
Score = 46.2 bits (108), Expect = 2e-06
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 70 PKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
P+ + + + + + ++ +F Q + P
Sbjct: 4 PEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPS 41
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 87.5 bits (215), Expect = 3e-20
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 17/169 (10%)
Query: 117 CGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEKGLSKIIADKIGIYVQQHGHKELVEKF 176
G+ + ++ S +D+ K S L + G+ +
Sbjct: 171 GGMTSSDPFSVFSIIDRYHKISR------EEFVDQLRSAGIGEDGVSMIADLCSGTRGID 224
Query: 177 MQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIYEAVLIGD 236
+ S + +AA++ LL+ + + +D S+ RGL YYTGI++EA
Sbjct: 225 EMARITGKSSEEIARMAAVEDLLASYGVKNVR----YDFSIVRGLSYYTGIVFEAYD--- 277
Query: 237 RKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVERIFSLIESK 285
+ ++ GGGRYD L + +VP VG +G I L++ +
Sbjct: 278 --RSGQFRAILGGGRYDNLASLMSG--ESVPAVGFGMGDAVISLLLKRE 322
Score = 55.1 bits (131), Expect = 3e-09
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 64 KLTLKTPKGTRDYGPEPMVLRKNVLEQIISVFKRHGAQTIDTPV 107
+L ++ +G RD+ PE M + K + + + G + ID P
Sbjct: 1 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPS 44
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 73.7 bits (180), Expect = 1e-15
Identities = 31/167 (18%), Positives = 49/167 (29%), Gaps = 18/167 (10%)
Query: 113 LFESCGVPAKQFRTICSSVDKLDKWSWEDVRYEMTQEK---GLSKIIADKIGIYVQQHGH 169
FE + + + K + + K + + K +
Sbjct: 120 FFEGPVIVEIGHTGVYEDLLKEIPKDLHEKVLNLIDTKNLAEIEFLSHMKKIDLSRVEKI 179
Query: 170 KELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARGLDYYTGIIY 229
E + LKT L + S+ T V DL+LAR ++ Y G+I+
Sbjct: 180 IEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFPTVSVEIDLTLARTIEEYCGLIF 239
Query: 230 EAVLIGDRKKGESVGSVAGGGRYDKLVGMFDPRQRNVPCVGISIGVE 276
+ VA GG Y VG SI +E
Sbjct: 240 TIYDTSSSR------LVAAGGEYTVNG---------EKGVGGSIFLE 271
Score = 25.5 bits (55), Expect = 9.7
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 9/40 (22%)
Query: 88 LEQIIS---VFKRHGAQTIDTPVCLLDGLFESCGVPAKQF 124
E++ S + G P E PA F
Sbjct: 6 FEKVFSFYSKATKKGFSPFFVPA------LEKAEEPAGNF 39
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
(EPRS) second repeated element {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 35.1 bits (81), Expect = 7e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 2 DRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTT 49
D L + N + Q DV+R+LK P ++ + +L LK++ T
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAKKAPKEDV-DAAVKQLLSLKAEYKEKT 47
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
(EPRS) second repeated element {Chinese hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 56
Score = 34.3 bits (79), Expect = 0.001
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 6 IINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTT 49
+ ++I Q +V+RKLK P ++ + ++ L LK++ T
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKV-TEAVECLLSLKAEYKEKT 44
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 28.9 bits (65), Expect = 0.11
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 4 LRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSKLCRTT 49
L + N I Q +++R LK EI + L LK
Sbjct: 4 LELFNSIATQGELVRSLKAGNASKDEI-DSAVKMLVSLKMSYKAAA 48
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 435
Score = 31.3 bits (70), Expect = 0.18
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 161 GIYVQQHGHKELVEKFMQDDLLKTSKSALVGLAAIKLLLSYCDIYELTDKVIFDLSLARG 220
G V +GH L + + + + AL L + + +Y++ V+ + A+
Sbjct: 310 GRVVPGYGHAVLRKTDPRYTCQR--EFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKN 367
Query: 221 L----DYYTGIIYEA 231
D ++G++ +
Sbjct: 368 PWPNVDAHSGVLLQY 382
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 30.9 bits (69), Expect = 0.20
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 71 KGTRDYGPEPMVLRKNVLEQIIS--VFKRHGAQTIDTPVCLLDGLFE 115
+G DYGP + L+ N+ + V++R + +D V +
Sbjct: 29 QGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLH 75
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 29.2 bits (65), Expect = 0.87
Identities = 8/44 (18%), Positives = 25/44 (56%)
Query: 1 MDRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKELKSK 44
++ ++++E KE D I +L ++ +M+ ++L+ ++ +
Sbjct: 440 LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 483
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 26.5 bits (58), Expect = 1.6
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 299 QVYVASAQKNLLEERMRICSYLWKNGINAD 328
VY+ K L + G+N
Sbjct: 5 SVYICRVGKINSSIMNEYSRKLRERGMNVT 34
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 26.7 bits (58), Expect = 5.1
Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 1 MDRLRIINEIKEQRDVIRKLKDLVPPNIEIMKKEMDKLKE 40
+++ + +E+ + L L +I ++ +
Sbjct: 709 ERYQKLLKQKQEKETELENLLKLSA--KDIWNTDLKAFEV 746
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 25.5 bits (56), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 68 KTPKGTRDYGPEPMVLRKNVLEQIIS 93
K+P+GTR +GP LR +IIS
Sbjct: 91 KSPRGTRIFGPVARELRDKDFMKIIS 116
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 24.1 bits (52), Expect = 8.5
Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 88 LEQIISVFKRHGAQTIDTPVCLLDGLFESCGVPAKQFRT-ICSSVDKL 134
+ + F G ++ + + + G+ + I S+ +
Sbjct: 19 MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTM 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,231,767
Number of extensions: 58891
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 36
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)