BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1391
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 273 bits (697), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 157/442 (35%), Positives = 243/442 (54%), Gaps = 59/442 (13%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + +RVVP QSF + YAG+F F+LW GEWV+
Sbjct: 98 CQGAL----GDSWLLAAIASLTLNETILHRVVPYGQSFQ--EGYAGIFHFQLWQFGEWVD 151
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDD LPT +GKL F+ S ++FW LLEKAYAK++GSYEAL G + D TGG+
Sbjct: 152 VVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGV 211
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
TE +++ P+ +++ K L+ SL+ C++ S + + + F+ R
Sbjct: 212 TEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFK-----------NLVR 260
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
++ + + Q+ TY G+ V L+++RNP G E+ G WS +S W+
Sbjct: 261 GHAYSVTDAKQV-------------TYQGQRVNLIRMRNPW-GEVEWKGPWSDNSYEWNK 306
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLF 306
V +++E L V+ + DGEFW+S+ DF++ FT LE+ +L + D W +
Sbjct: 307 VDPYEREQLRVK-MEDGEFWMSFRDFIREFTKLEICNL----TPDALKSRTLRNWNTTFY 361
Query: 307 QGTWQRGVTAGGCRNNPETFHINPQLHLILSELEEV------------IISLNQH----- 349
+GTW+RG TAGGCRN P TF +NPQ + L E+++ +++L Q
Sbjct: 362 EGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRE 421
Query: 350 --SIMEPKVIGFTGYSLPKSSS---ENTGRAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQG 403
+ + IGF Y +P+ + + R FF N S S+ + N R+VS+R +L G
Sbjct: 422 RRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPG 481
Query: 404 SYLVLPTTFEPGQESGFTLRVY 425
Y+V+P+TFEP +E F LR +
Sbjct: 482 EYIVVPSTFEPNKEGDFLLRFF 503
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 6/112 (5%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
TY G+ V L+++RNP G E+ G WS +S W+ V +++E L V+ + DGEFW+S+ D
Sbjct: 273 TYQGQRVNLIRMRNPWGEV-EWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRD 330
Query: 563 FLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
F++ FT LE+ +L + D W ++GTW+RG TAGGCRN P
Sbjct: 331 FIREFTKLEICNL----TPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYP 378
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 258 bits (660), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 161/504 (31%), Positives = 254/504 (50%), Gaps = 62/504 (12%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + RVVP +QSF + YAG+F F+ W GEWVE
Sbjct: 97 CQGAL----GDCWLLAAIASLTLNEEILARVVPLNQSFQ--ENYAGIFHFQFWQYGEWVE 150
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YEAL G +G D TGGI
Sbjct: 151 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGI 210
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
E +++ P + +++ K L SL+ C++ + + F++ +
Sbjct: 211 AEWYELKKPPPNLFKIIQKALQKGSLLGCSIDITSAADSEAITFQKLVK----------- 259
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
G Y + E +E+ +G +L+++RNP G E+ G W+ + +W+
Sbjct: 260 ------------GHAYSVTGAEEVES-NGSLQKLIRIRNPW-GEVEWTGRWNDNCPSWNT 305
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLF 306
+ ++E L RH DGEFW+S++DFL+ ++ LE+ +L +T + W++
Sbjct: 306 IDPEERERLTRRH-EDGEFWMSFSDFLRHYSRLEICNLTPDTLTSDTY----KKWKLTKM 360
Query: 307 QGTWQRGVTAGGCRNNPETFHINPQLHLIL-----------SELEEVIISLNQHSIMEPK 355
G W+RG TAGGCRN P TF +NPQ + L S ++ + +H + K
Sbjct: 361 DGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDEEDGESGCTFLVGLIQKHRRRQRK 420
Query: 356 V------IGFTGYSLPKSSSENTG----RAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGS 404
+ IGF Y +P+ S T + FF N++ S + N R+V +R +L G
Sbjct: 421 MGEDMHTIGFGIYEVPEELSGQTNIHLSKNFFLTNRARERSDTFINLREVLNRFKLPPGE 480
Query: 405 YLVLPTTFEPGQESGFTLRVYXXXXXXXXXXXXXXXXXXXAIVKAPSSLDTKSFSQYEAV 464
Y+++P+TFEP ++ F +RV+ + +D +
Sbjct: 481 YILVPSTFEPNKDGDFCIRVFSEKKADYQAVDDEIEANLEEFDISEDDID----DGVRRL 536
Query: 465 FLQLADEHRTVNAFELQELLDACL 488
F QLA E ++AFELQ +L L
Sbjct: 537 FAQLAGEDAEISAFELQTILRRVL 560
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 7/115 (6%)
Query: 500 EIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWIS 559
E+E+ +G +L+++RNP G E+ G W+ + +W+ + ++E L RH DGEFW+S
Sbjct: 270 EVES-NGSLQKLIRIRNPWGEV-EWTGRWNDNCPSWNTIDPEERERLTRRH-EDGEFWMS 326
Query: 560 YADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
++DFL+ ++ LE+ +L +T + W++ G W+RG TAGGCRN P
Sbjct: 327 FSDFLRHYSRLEICNLTPDTLTSDTY----KKWKLTKMDGNWRRGSTAGGCRNYP 377
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 248 bits (633), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 161/504 (31%), Positives = 251/504 (49%), Gaps = 62/504 (12%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + RVVP DQSF + YAG+F F+ W GEWVE
Sbjct: 98 CQGAL----GDSWLLAAIASLTLNEEILARVVPLDQSFQ--ENYAGIFHFQFWQYGEWVE 151
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YEAL G +G D TGGI
Sbjct: 152 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGI 211
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
E +R+ P + +++ K L+ SL+ C++ + V +++ +
Sbjct: 212 AEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVK----------- 260
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
G Y + E +E+ G +L+++RNP G E+ G W+ + +W+
Sbjct: 261 ------------GHAYSVTGAEEVES-SGSLQKLIRIRNPW-GQVEWTGKWNDNCPSWNT 306
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLF 306
V + L R DGEFW+S++DFL+ ++ LE+ +L +T + W++
Sbjct: 307 VDPEVRANLTERQ-EDGEFWMSFSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKM 361
Query: 307 QGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE-----------VIISLNQHSIMEPK 355
G W+RG TAGGCRN P TF +NPQ + L E +E ++ + +H + K
Sbjct: 362 DGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRK 421
Query: 356 V------IGFTGYSLPKSSSENTG----RAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGS 404
+ IGF Y +P+ + T + FF ++ S + N R+V +R +L G
Sbjct: 422 MGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE 481
Query: 405 YLVLPTTFEPGQESGFTLRVYXXXXXXXXXXXXXXXXXXXAIVKAPSSLDTKSFSQYEAV 464
Y+++P+TFEP + F +RV+ I + + +
Sbjct: 482 YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIG----DGFRRL 537
Query: 465 FLQLADEHRTVNAFELQELLDACL 488
F QLA E ++AFELQ +L L
Sbjct: 538 FAQLAGEDAEISAFELQTILRRVL 561
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 500 EIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWIS 559
E+E+ G +L+++RNP G E+ G W+ + +W+ V + L R DGEFW+S
Sbjct: 271 EVES-SGSLQKLIRIRNPWGQV-EWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMS 327
Query: 560 YADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
++DFL+ ++ LE+ +L +T + W++ G W+RG TAGGCRN P
Sbjct: 328 FSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKMDGNWRRGSTAGGCRNYP 378
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 161/504 (31%), Positives = 251/504 (49%), Gaps = 62/504 (12%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + RVVP DQSF + YAG+F F+ W GEWVE
Sbjct: 98 CQGAL----GDSWLLAAIASLTLNEEILARVVPLDQSFQ--ENYAGIFHFQFWQYGEWVE 151
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YEAL G +G D TGGI
Sbjct: 152 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGI 211
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
E +R+ P + +++ K L+ SL+ C++ + V +++ +
Sbjct: 212 AEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVK----------- 260
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
G Y + E +E+ G +L+++RNP G E+ G W+ + +W+
Sbjct: 261 ------------GHAYSVTGAEEVES-SGSLQKLIRIRNPW-GQVEWTGKWNDNCPSWNT 306
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLF 306
V + L R DGEFW+S++DFL+ ++ LE+ +L +T + W++
Sbjct: 307 VDPEVRANLTERQ-EDGEFWMSFSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKM 361
Query: 307 QGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE-----------VIISLNQHSIMEPK 355
G W+RG TAGGCRN P TF +NPQ + L E +E ++ + +H + K
Sbjct: 362 DGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRK 421
Query: 356 V------IGFTGYSLPKSSSENTG----RAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGS 404
+ IGF Y +P+ + T + FF ++ S + N R+V +R +L G
Sbjct: 422 MGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE 481
Query: 405 YLVLPTTFEPGQESGFTLRVYXXXXXXXXXXXXXXXXXXXAIVKAPSSLDTKSFSQYEAV 464
Y+++P+TFEP + F +RV+ I + + +
Sbjct: 482 YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIG----DGFRRL 537
Query: 465 FLQLADEHRTVNAFELQELLDACL 488
F QLA E ++AFELQ +L L
Sbjct: 538 FAQLAGEDAEISAFELQTILRRVL 561
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 500 EIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWIS 559
E+E+ G +L+++RNP G E+ G W+ + +W+ V + L R DGEFW+S
Sbjct: 271 EVES-SGSLQKLIRIRNPWGQV-EWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMS 327
Query: 560 YADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
++DFL+ ++ LE+ +L +T + W++ G W+RG TAGGCRN P
Sbjct: 328 FSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKMDGNWRRGSTAGGCRNYP 378
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 161/504 (31%), Positives = 251/504 (49%), Gaps = 62/504 (12%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + RVVP DQSF + YAG+F F+ W GEWVE
Sbjct: 98 CQGAL----GDSWLLAAIASLTLNEEILARVVPLDQSFQ--ENYAGIFHFQFWQYGEWVE 151
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YEAL G +G D TGGI
Sbjct: 152 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGI 211
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
E +R+ P + +++ K L+ SL+ C++ + V +++ +
Sbjct: 212 AEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVK----------- 260
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
G Y + E +E+ G +L+++RNP G E+ G W+ + +W+
Sbjct: 261 ------------GHAYSVTGAEEVES-SGSLQKLIRIRNPW-GQVEWTGKWNDNCPSWNT 306
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLF 306
V + L R DGEFW+S++DFL+ ++ LE+ +L +T + W++
Sbjct: 307 VDPEVRANLTERQ-EDGEFWMSFSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKM 361
Query: 307 QGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE-----------VIISLNQHSIMEPK 355
G W+RG TAGGCRN P TF +NPQ + L E +E ++ + +H + K
Sbjct: 362 DGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRK 421
Query: 356 V------IGFTGYSLPKSSSENTG----RAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGS 404
+ IGF Y +P+ + T + FF ++ S + N R+V +R +L G
Sbjct: 422 MGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGE 481
Query: 405 YLVLPTTFEPGQESGFTLRVYXXXXXXXXXXXXXXXXXXXAIVKAPSSLDTKSFSQYEAV 464
Y+++P+TFEP + F +RV+ I + + +
Sbjct: 482 YVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIG----DGFRRL 537
Query: 465 FLQLADEHRTVNAFELQELLDACL 488
F QLA E ++AFELQ +L L
Sbjct: 538 FAQLAGEDAEISAFELQTILRRVL 561
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 500 EIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWIS 559
E+E+ G +L+++RNP G E+ G W+ + +W+ V + L R DGEFW+S
Sbjct: 271 EVES-SGSLQKLIRIRNPWGQV-EWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMS 327
Query: 560 YADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
++DFL+ ++ LE+ +L +T + W++ G W+RG TAGGCRN P
Sbjct: 328 FSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKMDGNWRRGSTAGGCRNYP 378
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 157/271 (57%), Gaps = 32/271 (11%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ L YRVVP DQ F + YAG+F F+ W GEWVEV++DDRLPT
Sbjct: 83 GDCWLLAAIASLTLNEELLYRVVPRDQDFQ--ENYAGIFHFQFWQYGEWVEVVIDDRLPT 140
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
NG+L FL S ++FW LLEKAYAKL+G YEAL G+ ++G D TGGI+E +++
Sbjct: 141 KNGQLLFLHSEQGNEFWSALLEKAYAKLNGXYEALAGGSTVEGFEDFTGGISEFYDLKKP 200
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P + +++ K L SL+ C++ D + +E + +
Sbjct: 201 PANLYQIIRKALXAGSLLGCSI------------------------DVYSAAEAEAITS- 235
Query: 196 IQIGINYRLYALERIE--TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKE 253
Q + Y++ +E + G P +L++LRNP G E+ GAWS D+ W+ + KE
Sbjct: 236 -QKLVKSHAYSVTGVEEVNFQGHPEKLIRLRNPW-GEVEWSGAWSDDAPEWNHIDPRRKE 293
Query: 254 TLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
L + + DGEFW+S +DF++ F+ LE+ +L
Sbjct: 294 ELD-KKVEDGEFWMSLSDFVRQFSRLEICNL 323
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 476 NAFELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNW 535
+A E + + L + S +E + G P +L++LRNP G E+ GAWS D+ W
Sbjct: 226 SAAEAEAITSQKLVKSHAYSVTGVEEVNFQGHPEKLIRLRNPWGEV-EWSGAWSDDAPEW 284
Query: 536 DAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 575
+ + KE L + + DGEFW+S +DF++ F+ LE+ +L
Sbjct: 285 NHIDPRRKEELD-KKVEDGEFWMSLSDFVRQFSRLEICNL 323
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 162/278 (58%), Gaps = 32/278 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L+ L +RVVP QSF + YAG+F F+LW GEWV+
Sbjct: 99 CQGAL----GDCWLLAAIASLTLNDTLLHRVVPHGQSFQ--NGYAGIFHFQLWQFGEWVD 152
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDD LP +GKL F+ S ++FW LLEKAYAK++GSYEAL G+ +G D TGG+
Sbjct: 153 VVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGV 212
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
TE +R+ P+ +++ K L+ SL+ C++ S + + F++ +
Sbjct: 213 TEWYELRKAPSDLYQIILKALERGSLLGCSIDISSVLDMEAITFKKLVK----------- 261
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
G Y + +++ Y G+ V L+++RNP G E+ GAWS SS W+
Sbjct: 262 ------------GHAYSVTGAKQV-NYRGQVVSLIRMRNPW-GEVEWTGAWSDSSSEWNN 307
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
V ++++ L V+ + DGEFW+S+ DF++ FT LE+ +L
Sbjct: 308 VDPYERDQLRVK-MEDGEFWMSFRDFMREFTRLEICNL 344
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
Y G+ V L+++RNP G E+ GAWS SS W+ V ++++ L V+ + DGEFW+S+ D
Sbjct: 274 NYRGQVVSLIRMRNPWGEV-EWTGAWSDSSSEWNNVDPYERDQLRVK-MEDGEFWMSFRD 331
Query: 563 FLKAFTHLEVVHL 575
F++ FT LE+ +L
Sbjct: 332 FMREFTRLEICNL 344
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 162/278 (58%), Gaps = 32/278 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + +RVVP QSF + YAG+F F+LW GEWV+
Sbjct: 83 CQGAL----GDSWLLAAIASLTLNETILHRVVPYGQSFQ--EGYAGIFHFQLWQFGEWVD 136
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDD LPT +GKL F+ S ++FW LLEKAYAK++GSYEAL G + D TGG+
Sbjct: 137 VVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGV 196
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
TE +++ P+ +++ K L+ SL+ C++ S + + + F+ R
Sbjct: 197 TEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFK-----------NLVR 245
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
++ + + Q+ TY G+ V L+++RNP G E+ G WS +S W+
Sbjct: 246 GHAYSVTDAKQV-------------TYQGQRVNLIRMRNPW-GEVEWKGPWSDNSYEWNK 291
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
V +++E L V+ + DGEFW+S+ DF++ FT LE+ +L
Sbjct: 292 VDPYEREQLRVK-MEDGEFWMSFRDFIREFTKLEICNL 328
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
TY G+ V L+++RNP G E+ G WS +S W+ V +++E L V+ + DGEFW+S+ D
Sbjct: 258 TYQGQRVNLIRMRNPWGEV-EWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRD 315
Query: 563 FLKAFTHLEVVHL 575
F++ FT LE+ +L
Sbjct: 316 FIREFTKLEICNL 328
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 162/278 (58%), Gaps = 32/278 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + +RVVP QSF + YAG+F F+LW GEWV+
Sbjct: 83 CQGAL----GDCWLLAAIASLTLNETILHRVVPYGQSFQ--EGYAGIFHFQLWQFGEWVD 136
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDD LPT +GKL F+ S ++FW LLEKAYAK++GSYEAL G + D TGG+
Sbjct: 137 VVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGV 196
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
TE +++ P+ +++ K L+ SL+ C++ S + + + F+ R
Sbjct: 197 TEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFK-----------NLVR 245
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
++ + + Q+ TY G+ V L+++RNP G E+ G WS +S W+
Sbjct: 246 GHAYSVTDAKQV-------------TYQGQRVNLIRMRNPW-GEVEWKGPWSDNSYEWNK 291
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
V +++E L V+ + DGEFW+S+ DF++ FT LE+ +L
Sbjct: 292 VDPYEREQLRVK-MEDGEFWMSFRDFIREFTKLEICNL 328
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
TY G+ V L+++RNP G E+ G WS +S W+ V +++E L V+ + DGEFW+S+ D
Sbjct: 258 TYQGQRVNLIRMRNPWGEV-EWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRD 315
Query: 563 FLKAFTHLEVVHL 575
F++ FT LE+ +L
Sbjct: 316 FIREFTKLEICNL 328
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 188 bits (477), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/278 (37%), Positives = 161/278 (57%), Gaps = 32/278 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L+ L +RVVP QSF + YAG+F F+LW GEWV+
Sbjct: 76 CQGAL----GDCWLLAAIASLTLNDTLLHRVVPHGQSFQ--NGYAGIFHFQLWQFGEWVD 129
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDD LP +GKL F+ S ++FW LLEKAYAK++GSYEAL G+ + D TGG+
Sbjct: 130 VVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGSTSEAFEDFTGGV 189
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
TE +R+ P+ +++ K L+ SL+ C++ S + + F++ +
Sbjct: 190 TEWYELRKAPSDLYQIILKALERGSLLGCSIDISSVLDMEAITFKKLVK----------- 238
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
G Y + +++ Y G+ V L+++RNP G E+ GAWS SS W+
Sbjct: 239 ------------GHAYSVTGAKQV-NYRGQVVSLIRMRNPW-GEVEWTGAWSDSSSEWNN 284
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
V ++++ L V+ + DGEFW+S+ DF++ FT LE+ +L
Sbjct: 285 VDPYERDQLRVK-MEDGEFWMSFRDFMREFTRLEICNL 321
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
Y G+ V L+++RNP G E+ GAWS SS W+ V ++++ L V+ + DGEFW+S+ D
Sbjct: 251 NYRGQVVSLIRMRNPWGEV-EWTGAWSDSSSEWNNVDPYERDQLRVK-MEDGEFWMSFRD 308
Query: 563 FLKAFTHLEVVHL 575
F++ FT LE+ +L
Sbjct: 309 FMREFTRLEICNL 321
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 153/278 (55%), Gaps = 32/278 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ + RVVP DQSF + YAG+F F+ W GEWVE
Sbjct: 80 CQGAL----GDSWLLAAIASLTLNEEILARVVPLDQSFQ--ENYAGIFHFQFWQYGEWVE 133
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDDRLPT +G+L F+ S +FW LLEKAYAK++G YEAL G +G D TGGI
Sbjct: 134 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGI 193
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
E +R+ P + +++ K L+ SL+ C++ + V +++ +
Sbjct: 194 AEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVK----------- 242
Query: 187 PNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 246
G Y + E +E+ G +L+++RNP G E+ G W+ + +W+
Sbjct: 243 ------------GHAYSVTGAEEVES-SGSLQKLIRIRNPW-GQVEWTGKWNDNCPSWNT 288
Query: 247 VSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
V + L R DGEFW+S++DFL+ ++ LE+ +L
Sbjct: 289 VDPEVRANLTERQ-EDGEFWMSFSDFLRHYSRLEICNL 325
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 500 EIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWIS 559
E+E+ G +L+++RNP G E+ G W+ + +W+ V + L R DGEFW+S
Sbjct: 253 EVES-SGSLQKLIRIRNPWGQV-EWTGKWNDNCPSWNTVDPEVRANLTERQ-EDGEFWMS 309
Query: 560 YADFLKAFTHLEVVHL 575
++DFL+ ++ LE+ +L
Sbjct: 310 FSDFLRHYSRLEICNL 325
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 155/279 (55%), Gaps = 33/279 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ RV+P DQSF YAG+F F+ W EW++
Sbjct: 83 CQGEL----GDCWLLAAIASLTLNQKALARVIPQDQSFGP--GYAGIFHFQFWQHSEWLD 136
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V++DDRLPT +L FL S ++FW LLEKAYAKL+GSYEALK G+ ++ + D TGG+
Sbjct: 137 VVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGV 196
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
E+ ++ P + +L K L SL+ C + DT++
Sbjct: 197 AETFQTKEAPENFYEILEKALKRGSLLGCFI------------------------DTRSA 232
Query: 187 PNSE-KLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWD 245
SE + G+ G Y + ++++ ++ G+ ++L+++RNP G E+ G+WS S W
Sbjct: 233 AESEARTPFGLIKGHAYSVTGIDQV-SFRGQRIELIRIRNPW-GQVEWNGSWSDSSPEWR 290
Query: 246 AVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
+V +++ L L DGEFW+++ DF F +E+ +L
Sbjct: 291 SVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNL 329
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
++ G+ ++L+++RNP G E+ G+WS S W +V +++ L L DGEFW+++ D
Sbjct: 258 SFRGQRIELIRIRNPWGQV-EWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKD 316
Query: 563 FLKAFTHLEVVHL 575
F F +E+ +L
Sbjct: 317 FKAHFDKVEICNL 329
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 162/291 (55%), Gaps = 34/291 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ RV+P DQSF YAG+F F+ W EW++
Sbjct: 82 CQGEL----GDCWLLAAIASLTLNQKALARVIPQDQSFGP--GYAGIFHFQFWQHSEWLD 135
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V++DDRLPT +L FL S ++FW LLEKAYAKL+GSYEALK G+ ++ + D TGG+
Sbjct: 136 VVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGV 195
Query: 127 TESISIRQDPTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTR 186
E+ ++ P + +L K L SL+ C + DT++
Sbjct: 196 AETFQTKEAPENFYEILEKALKRGSLLGCFI------------------------DTRSA 231
Query: 187 PNSE-KLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWD 245
SE + G+ G Y + ++++ ++ G+ ++L+++RNP G E+ G+WS S W
Sbjct: 232 AESEARTPFGLIKGHAYSVTGIDQV-SFRGQRIELIRIRNPW-GQVEWNGSWSDSSPEWR 289
Query: 246 AVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLH 296
+V +++ L L DGEFW+++ DF F +E+ +L + + +E ++H
Sbjct: 290 SVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNLTPD-ALEEDAIH 339
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
++ G+ ++L+++RNP G E+ G+WS S W +V +++ L L DGEFW+++ D
Sbjct: 257 SFRGQRIELIRIRNPWGQV-EWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKD 315
Query: 563 FLKAFTHLEVVHLDSETSRDEPSLH 587
F F +E+ +L + + +E ++H
Sbjct: 316 FKAHFDKVEICNLTPD-ALEEDAIH 339
>pdb|2QFE|A Chain A, Distal C2-Like Domain Of Human Calpain-7
Length = 148
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 27/124 (21%)
Query: 308 GTWQRGVTAGGCRNNPETFHINPQLHLILSELEEVIISL---NQHSIMEPKVIGFTGYSL 364
G W G +AGGC N ET NP + + ++I L Q+S +GF ++
Sbjct: 29 GKWS-GQSAGGCGNFQETHKNNPIYQFHIEKTGPLLIELRGPRQYS------VGFEVVTV 81
Query: 365 PKSSSENTG-RAFFKKNKSLVNSQYTNSRQVSHRCQLE-----QGSYLVLPTTFEPGQES 418
S+ + G F +K+ + C LE G + ++P+TF P QE
Sbjct: 82 --STLGDPGPHGFLRKSSGDYRCGF---------CYLELENIPSGIFNIIPSTFLPKQEG 130
Query: 419 GFTL 422
F L
Sbjct: 131 PFFL 134
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 162 PQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANGIQIGINYRLYALERIETYD 214
P+P G+VEF R I I + +RP S + G+ N + RIE D
Sbjct: 143 PRPFGVVEFDSEGRVI-SIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSD 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,644,637
Number of Sequences: 62578
Number of extensions: 845306
Number of successful extensions: 1464
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1361
Number of HSP's gapped (non-prelim): 30
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)