RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1391
(614 letters)
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 240 bits (613), Expect = 2e-74
Identities = 106/280 (37%), Positives = 158/280 (56%), Gaps = 33/280 (11%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G L GD WL++ + L L++ L +RVVP DQSF + YAG+F F+ W GEWV+
Sbjct: 54 CQGAL----GDCWLLAAIASLTLNEELLFRVVPHDQSFQ--ENYAGIFHFQFWQYGEWVD 107
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V+VDDRLPT +G+L F+ S ++FW LLEKAYAKLHG YEAL G+ + + D TGG+
Sbjct: 108 VVVDDRLPTKDGELVFVHSAERNEFWSALLEKAYAKLHGCYEALSGGSTTEAMEDFTGGV 167
Query: 127 TESISIRQDPTSS--GRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTK 184
E ++Q P+ +++ K L+ SL+ C++ + P D +
Sbjct: 168 AEWYELKQAPSDLNLFKIIAKALERGSLMGCSIDITSPV------------------DME 209
Query: 185 TRPNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNW 244
R G+ G Y + ++ + Y GE +L++LRNP G E+ GAWS S W
Sbjct: 210 AR-----TFKGLVKGHAYSVTGVKEVN-YRGEKQKLIRLRNPW-GQVEWTGAWSDGSPEW 262
Query: 245 DAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
+ ++ L ++ DGEFW+S+ DFL+ F+ LE+ +L
Sbjct: 263 RFIDPDERARLQLQFEEDGEFWMSFEDFLRHFSRLEICNL 302
Score = 81.7 bits (202), Expect = 5e-17
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 504 YDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADF 563
Y GE +L++LRNP G E+ GAWS S W + ++ L ++ DGEFW+S+ DF
Sbjct: 232 YRGEKQKLIRLRNPWGQV-EWTGAWSDGSPEWRFIDPDERARLQLQFEEDGEFWMSFEDF 290
Query: 564 LKAFTHLEVVHL 575
L+ F+ LE+ +L
Sbjct: 291 LRHFSRLEICNL 302
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family.
Calpain-like thiol protease family (peptidase family
C2). Calcium activated neutral protease (large subunit).
Length = 318
Score = 227 bits (580), Expect = 2e-69
Identities = 109/281 (38%), Positives = 156/281 (55%), Gaps = 36/281 (12%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C GVL GD WL++ L L L + L RV+P DQ FS + YAG+F FR W G+WV+
Sbjct: 62 CQGVL----GDCWLLAALASLTLREKLLDRVIPHDQEFS--ENYAGIFHFRFWRFGKWVD 115
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V++DDRLPT NG+L F+ S ++FW LLEKAYAKL+G YEALK G+ + L DLTGG+
Sbjct: 116 VVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKLNGCYEALKGGSTTEALEDLTGGV 175
Query: 127 TESISIRQDPTSSGRLLNKL---LDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDT 183
ESI +++ L L + SL+ C++ + + E
Sbjct: 176 AESIDLKEASKDPDNLFEDLFKAFERGSLMGCSIGAGTA----VEE-------------- 217
Query: 184 KTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSN 243
E+ G+ + Y++ + G +L++LRNP G E+ G WS DS
Sbjct: 218 -----EEQKDCGL---VKGHAYSVTDVREVQGRRQELLRLRNPW-GQVEWNGPWSDDSPE 268
Query: 244 WDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHL 284
W +VSA +K+ LG+ DGEFW+S+ DFL+ F +E+ +L
Sbjct: 269 WRSVSASEKKNLGLTFDDDGEFWMSFEDFLRHFDKVEICNL 309
Score = 75.1 bits (185), Expect = 1e-14
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 505 DGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADFL 564
G +L++LRNP G E+ G WS DS W +VSA +K+ LG+ DGEFW+S+ DFL
Sbjct: 240 QGRRQELLRLRNPWGQV-EWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFL 298
Query: 565 KAFTHLEVVHL 575
+ F +E+ +L
Sbjct: 299 RHFDKVEICNL 309
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent
cytoplasmic cysteine proteinases, papain-like. Functions
in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Length = 315
Score = 224 bits (572), Expect = 3e-68
Identities = 105/282 (37%), Positives = 142/282 (50%), Gaps = 41/282 (14%)
Query: 7 CLGVLYLSKGDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVE 66
C G+L GD W ++ L L L RV+P DQSF YAG++ FR W GEWVE
Sbjct: 70 CQGIL----GDCWFLAALAALAERPELLKRVIPPDQSFEEN--YAGIYHFRFWKNGEWVE 123
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGI 126
V++DDRLPT NG L F+ S ++ W LLEKAYAKLHGSYEAL G + L DLTGG
Sbjct: 124 VVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEALVGGNTAEALEDLTGGP 183
Query: 127 TESISIRQDPTSSG-----RLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIP 181
TE I ++ SSG LL L SLI C+
Sbjct: 184 TERIDLKSADASSGDNDLFALLLSFLQGGSLIGCST------------------------ 219
Query: 182 DTKTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDS 241
+++ + ANG+ G Y + + ++ ++L++LRNP G G + G S
Sbjct: 220 GSRSEE-EARTANGLVKGHAYSVLDVREVQEEG---LRLLRLRNPWGVGEWWGGWSDDSS 275
Query: 242 SNWDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVH 283
W V +++ L + DGEFW+S+ DFL+ F L V +
Sbjct: 276 EWW--VIDAERKKLLLSGKDDGEFWMSFEDFLRNFDGLYVCN 315
Score = 62.3 bits (152), Expect = 2e-10
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 499 MEIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWI 558
+++ E ++L++LRNP G G + G S W V +++ L + DGEFW+
Sbjct: 242 LDVREVQEEGLRLLRLRNPWGVGEWWGGWSDDSSEWW--VIDAERKKLLLSGKDDGEFWM 299
Query: 559 SYADFLKAFTHLEVVH 574
S+ DFL+ F L V +
Sbjct: 300 SFEDFLRNFDGLYVCN 315
>gnl|CDD|216279 pfam01067, Calpain_III, Calpain large subunit, domain III. The
function of the domain III and I are currently unknown.
Domain II is a cysteine protease and domain IV is a
calcium binding domain. Calpains are believed to
participate in intracellular signaling pathways mediated
by calcium ions.
Length = 142
Score = 144 bits (364), Expect = 2e-40
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 14/144 (9%)
Query: 300 TWQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE----VIISLNQ------- 348
W++ +++G+W RG TAGGCRN P+TF NPQ L L+E ++ V+++L Q
Sbjct: 1 KWKVTVYEGSWVRGSTAGGCRNFPDTFWTNPQYRLSLTEPDDDDCSVLVALMQKNRRKKR 60
Query: 349 HSIMEPKVIGFTGYSLPKSSSENTGRAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGSYLV 407
+ IGF Y + R FF +N+S+ S Y N R+V+ R +L G+Y++
Sbjct: 61 KEGADNLTIGFAIYKVDPQKELP--RKFFSQNRSIARSSTYINLREVTERFRLPPGTYVI 118
Query: 408 LPTTFEPGQESGFTLRVYSSNPLK 431
+P+TFEPGQE F LRV+S P+
Sbjct: 119 VPSTFEPGQEGEFLLRVFSEKPID 142
Score = 47.7 bits (114), Expect = 1e-06
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 591 TWQMRLFQGTWQRGVTAGGCRNNP 614
W++ +++G+W RG TAGGCRN P
Sbjct: 1 KWKVTVYEGSWVRGSTAGGCRNFP 24
>gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III. Calpains are
calcium-activated cytoplasmic cysteine proteinases,
participate in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Catalytic domain and the two calmodulin-like domains are
separated by C2-like domain III. Domain III plays an
important role in calcium-induced activation of calpain
involving electrostatic interactions with subdomain II.
Proposed to mediate calpain's interaction with
phospholipids and translocation to cytoplasmic/nuclear
membranes. CD includes subdomain III of typical and
atypical calpains.
Length = 150
Score = 137 bits (347), Expect = 4e-38
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 15/150 (10%)
Query: 300 TWQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE------VIISLNQHSI-- 351
W + F G W+RG TAGGCRNNP+TF NPQ + + E ++ V+I+L Q +
Sbjct: 2 KWHTKSFNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPDDDEGKCTVLIALMQKNRRH 61
Query: 352 -----MEPKVIGFTGYSLPKSSSENTGRAFFKKNKSLV-NSQYTNSRQVSHRCQLEQGSY 405
++ IGF Y +P + + R FF +S + N+R+VS R +L G Y
Sbjct: 62 LRKKGLDLLTIGFHVYKVPGEN-RHLRRDFFLHKAPRARSSTFINTREVSLRFRLPPGEY 120
Query: 406 LVLPTTFEPGQESGFTLRVYSSNPLKLKLL 435
+++P+TFEPG+E F LRV+S +K L
Sbjct: 121 VIVPSTFEPGEEGEFLLRVFSEKSIKSSEL 150
Score = 46.5 bits (111), Expect = 5e-06
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 591 TWQMRLFQGTWQRGVTAGGCRNNP 614
W + F G W+RG TAGGCRNNP
Sbjct: 2 KWHTKSFNGEWRRGQTAGGCRNNP 25
>gnl|CDD|214786 smart00720, calpain_III, calpain_III domain.
Length = 143
Score = 135 bits (341), Expect = 2e-37
Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 301 WQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE----VIISLNQHSI----- 351
W + QG+W RG TAGGCRN P TF NPQ + L E ++ V+I+L Q +
Sbjct: 1 WHTKSVQGSWTRGQTAGGCRNYPATFWTNPQFRITLEEPDDDDCTVLIALMQKNRRRLRR 60
Query: 352 --MEPKVIGFTGYSLPKSSSENTGRAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGSYLVL 408
+ IGF Y +PK R FF N +S Y N R+VS R +L G Y+++
Sbjct: 61 KGADFLTIGFAVYKVPKELH--LRRDFFLSNAPRASSGDYINGREVSERFRLPPGEYVIV 118
Query: 409 PTTFEPGQESGFTLRVYSSNPLKL 432
P+TFEP QE F LRV+S P KL
Sbjct: 119 PSTFEPNQEGDFLLRVFSEGPFKL 142
Score = 45.8 bits (109), Expect = 7e-06
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 592 WQMRLFQGTWQRGVTAGGCRNNP 614
W + QG+W RG TAGGCRN P
Sbjct: 1 WHTKSVQGSWTRGQTAGGCRNYP 23
>gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA)
domain PoS1-like. This group includes various PA
domain-containing proteins similar to Pleurotus
ostreatus (Po)S1. PoSl, the main extracellular protease
in P. ostreatus is a subtilisin-like serine protease
belonging to the peptidase S8 family. Ca2+ and Mn2+ both
stimulate the protease activity of (Po)S1. Ca2+ protects
PoS1 from autolysis. PoS1 is a monomeric glycoprotein,
which may play a role in the regulation of laccases in
lignin formation. (Po)S1 participates in the degradation
of POXA1b, and in the activation of POXA3, (POXA1b and
POXA3 are laccase isoenzymes), but its effect may be
indirect. The significance of the PA domain to PoS1 has
not been ascertained. It may be a protein-protein
interaction domain. At peptidase active sites, the PA
domain may participate in substrate binding and/or
promoting conformational changes, which influence the
stability and accessibility of the site to substrate.
Length = 129
Score = 30.8 bits (70), Expect = 0.73
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 221 VKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWI 267
K N G +Y+ ++ S D V + + DGE WI
Sbjct: 70 TKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVTPEDGEAWI 116
Score = 30.8 bits (70), Expect = 0.73
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 512 VKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWI 558
K N G +Y+ ++ S D V + + DGE WI
Sbjct: 70 TKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVTPEDGEAWI 116
>gnl|CDD|225099 COG2188, PhnF, Transcriptional regulators [Transcription].
Length = 236
Score = 30.3 bits (69), Expect = 2.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 161 QPQPVGLVEFRRSSRTIRRIPDTKT-----RPNSEKLANGIQIGINYRLYALERIETYDG 215
Q + L F ++ P T+ P S ++A + + +Y LER+ DG
Sbjct: 77 QSPLLELTSFSEELKSQGLEPTTEVLSFEIEPASPEVAELLGLPPGEPVYRLERLRYADG 136
Query: 216 EPVQL 220
EPV L
Sbjct: 137 EPVAL 141
>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein
AtoC; Provisional.
Length = 457
Score = 30.6 bits (69), Expect = 2.6
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 67 VLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYG 113
VL+D R+P ++G A + + P +L AYA++ + EAL+ G
Sbjct: 52 VLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCG 98
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 30.3 bits (68), Expect = 4.1
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 327 HINPQLHLILSELEEVIISLNQHSIMEPKVIGFTGYSLPKSSSENTGRAF-FKKNK---- 381
H+ +L +++S+L+ +S + V +++P+ + EN GR F K+K
Sbjct: 63 HLQKELEILISKLKTSTVS-DNSEDYNYLVSHNVNFTIPQCNLENKGRIFQLLKSKLNSP 121
Query: 382 -SLVNSQYTN 390
+ S TN
Sbjct: 122 LEVAPSLSTN 131
>gnl|CDD|214869 smart00866, UTRA, The UbiC transcription regulator-associated
(UTRA) domain is a conserved ligand-binding domain. It
has a similar fold to HutC/FarR-like bacterial
transcription factors of the GntR family. It is believed
to modulate activity of bacterial transcription factors
in response to binding small molecules.
Length = 143
Score = 28.0 bits (63), Expect = 7.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 171 RRSSRTIRRIPDTKTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQL 220
+ + ++ + P E+LA + + +Y +ER+ DGEPV L
Sbjct: 1 AQGRKPTTKVLSFERVPADEELAEALGLPPGDPVYRIERLRLADGEPVAL 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.415
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,414,403
Number of extensions: 3035276
Number of successful extensions: 2111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2097
Number of HSP's successfully gapped: 25
Length of query: 614
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 511
Effective length of database: 6,369,140
Effective search space: 3254630540
Effective search space used: 3254630540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)