RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1391
(614 letters)
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 337 bits (865), Expect = e-107
Identities = 164/510 (32%), Positives = 251/510 (49%), Gaps = 58/510 (11%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ + RVVP DQSF + YAG+F F+ W GEWVEV+VDDRLPT
Sbjct: 103 GDSWLLAAIASLTLNEEILARVVPLDQSF--QENYAGIFHFQFWQYGEWVEVVVDDRLPT 160
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
+G+L F+ S +FW LLEKAYAK++G YEAL G +G D TGGI E +R+
Sbjct: 161 KDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKP 220
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P + +++ K L+ SL+ C+ I T +
Sbjct: 221 PPNLFKIIQKALEKGSLLGCS-----------------------IDITSAADSEAVTYQK 257
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ G Y + E +E G +L+++RNP G E+ G W+ + +W+ V + L
Sbjct: 258 LVKGHAYSVTGAEEVE-SSGSLQKLIRIRNPW-GQVEWTGKWNDNCPSWNTVDPEVRANL 315
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVT 315
R DGEFW+S++DFL+ ++ LE+ +L +T + W++ G W+RG T
Sbjct: 316 TERQ-EDGEFWMSFSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKMDGNWRRGST 370
Query: 316 AGGCRNNPETFHINPQLHLILSELEE----------VIISLNQHSI-------MEPKVIG 358
AGGCRN P TF +NPQ + L E +E ++ L Q + IG
Sbjct: 371 AGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIG 430
Query: 359 FTGYSLPKSSSENT----GRAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGSYLVLPTTFE 413
F Y +P+ + T + FF ++ S + N R+V +R +L G Y+++P+TFE
Sbjct: 431 FGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFE 490
Query: 414 PGQESGFTLRVYSSNPLKLKLLDSLPSVLKSAIVKAPSSLDTKSFSQYEAVFLQLADEHR 473
P + F +RV+S + +D A ++ + + + +F QLA E
Sbjct: 491 PHKNGDFCIRVFSEKKADYQTVDDEI----EANIEEIEANEEDIGDGFRRLFAQLAGEDA 546
Query: 474 TVNAFELQELLDACLPNDYIKSCACMEIET 503
++AFELQ +L L IET
Sbjct: 547 EISAFELQTILRRVLAKREDIKSDGFSIET 576
Score = 91.4 bits (226), Expect = 2e-19
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 495 SCACMEIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADG 554
S E G +L+++RNP G E+ G W+ + +W+ V + L R DG
Sbjct: 265 SVTGAEEVESSGSLQKLIRIRNPWGQV-EWTGKWNDNCPSWNTVDPEVRANLTERQ-EDG 322
Query: 555 EFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
EFW+S++DFL+ ++ LE+ +L +T + W++ G W+RG TAGGCRN P
Sbjct: 323 EFWMSFSDFLRHYSRLEICNLTPDTL----TCDSYKKWKLTKMDGNWRRGSTAGGCRNYP 378
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 331 bits (849), Expect = e-103
Identities = 181/612 (29%), Positives = 289/612 (47%), Gaps = 92/612 (15%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ + +RVVP QSF + YAG+F F+LW GEWV+V+VDD LPT
Sbjct: 103 GDSWLLAAIASLTLNETILHRVVPYGQSF--QEGYAGIFHFQLWQFGEWVDVVVDDLLPT 160
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
+GKL F+ S ++FW LLEKAYAK++GSYEAL G + D TGG+TE +++
Sbjct: 161 KDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKA 220
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P+ +++ K L+ SL+ C++ S + +
Sbjct: 221 PSDLYQIILKALERGSLLGCSINISDIRDLE-----------------------AITFKN 257
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ G Y + +++ TY G+ V L+++RNP G E+ G WS +S W+ V +++E L
Sbjct: 258 LVRGHAYSVTDAKQV-TYQGQRVNLIRMRNPW-GEVEWKGPWSDNSYEWNKVDPYEREQL 315
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVT 315
V+ DGEFW+S+ DF++ FT LE+ +L D W ++GTW+RG T
Sbjct: 316 RVKM-EDGEFWMSFRDFIREFTKLEICNLTP----DALKSRTLRNWNTTFYEGTWRRGST 370
Query: 316 AGGCRNNPETFHINPQLHLILSELEE------------VIISLNQHSI-------MEPKV 356
AGGCRN P TF +NPQ + L E+++ +++L Q + +
Sbjct: 371 AGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMET 430
Query: 357 IGFTGYSLPK---SSSENTGRAFFKKNKSLVNSQ-YTNSRQVSHRCQLEQGSYLVLPTTF 412
IGF Y +P+ + R FF N S S+ + N R+VS+R +L G Y+V+P+TF
Sbjct: 431 IGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTF 490
Query: 413 EPGQESGFTLRVYSSNPLKLKLLDSLPSVLKSAIVKAPSSLDTKSFSQYEAVFLQLADEH 472
EP +E F LR +S + LD + + ++ +F +LA +
Sbjct: 491 EPNKEGDFLLRFFSEKKAGTQELDDQIQANLPDE---KVLSEEEIDDNFKTLFSKLAGDD 547
Query: 473 RTVNAFELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPLGGG----GEYIGAW 528
++ ELQ +L+ + +E+ +V L + G G E+ W
Sbjct: 548 MEISVKELQTILNRIISKHKDLRTNGFSLESCR----SMVNLMDRDGNGKLGLVEFNILW 603
Query: 529 SRDSSNWDAVSAHDKETLG--------------------------VRHLADGEFWISYAD 562
+R + D + G V AD E I + +
Sbjct: 604 NRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDN 663
Query: 563 FLKAFTHLEVVH 574
F++ LE++
Sbjct: 664 FVRCLVRLEILF 675
Score = 97.5 bits (242), Expect = 3e-21
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
TY G+ V L+++RNP G E+ G WS +S W+ V +++E L V+ DGEFW+S+ D
Sbjct: 273 TYQGQRVNLIRMRNPWGEV-EWKGPWSDNSYEWNKVDPYEREQLRVKM-EDGEFWMSFRD 330
Query: 563 FLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
F++ FT LE+ +L D W ++GTW+RG TAGGCRN P
Sbjct: 331 FIREFTKLEICNLTP----DALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYP 378
Score = 39.8 bits (92), Expect = 0.003
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 454 DTKSFSQYEAVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIET 503
+++ Q+ +F+QLA + V+A EL +L+ + I+T
Sbjct: 726 ESEEERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDT 775
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine
proteinases, like, EF-hand, structural genomics,
structural genomics CON SGC; HET: AR7; 2.20A {Homo
sapiens}
Length = 326
Score = 219 bits (558), Expect = 3e-66
Identities = 101/272 (37%), Positives = 152/272 (55%), Gaps = 28/272 (10%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ L YRVVP DQ F + YAG+F F+ W GEWVEV++DDRLPT
Sbjct: 83 GDCWLLAAIASLTLNEELLYRVVPRDQDF--QENYAGIFHFQFWQYGEWVEVVIDDRLPT 140
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
NG+L FL S ++FW LLEKAYAKL+G YEAL G+ ++G D TGGI+E +++
Sbjct: 141 KNGQLLFLHSEQGNEFWSALLEKAYAKLNGCYEALAGGSTVEGFEDFTGGISEFYDLKKP 200
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P + +++ K L SL+ C++ +
Sbjct: 201 PANLYQIIRKALCAGSLLGCSIDVYSA-----------------------AEAEAITSQK 237
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ Y + +E + + G P +L++LRNP G E+ GAWS D+ W+ + KE L
Sbjct: 238 LVKSHAYSVTGVEEVN-FQGHPEKLIRLRNPW-GEVEWSGAWSDDAPEWNHIDPRRKEEL 295
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHLDSE 287
+ + DGEFW+S +DF++ F+ LE+ +L +
Sbjct: 296 DKK-VEDGEFWMSLSDFVRQFSRLEICNLSPD 326
Score = 82.4 bits (203), Expect = 3e-17
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 504 YDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADF 563
+ G P +L++LRNP G E+ GAWS D+ W+ + KE L + + DGEFW+S +DF
Sbjct: 254 FQGHPEKLIRLRNPWGEV-EWSGAWSDDAPEWNHIDPRRKEELDKK-VEDGEFWMSLSDF 311
Query: 564 LKAFTHLEVVHLDSE 578
++ F+ LE+ +L +
Sbjct: 312 VRQFSRLEICNLSPD 326
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol
protease, structural genomics consortium, SGC,
hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB:
2p0r_A*
Length = 339
Score = 202 bits (515), Expect = 4e-60
Identities = 94/281 (33%), Positives = 152/281 (54%), Gaps = 28/281 (9%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ RV+P DQSF YAG+F F+ W EW++V++DDRLPT
Sbjct: 87 GDCWLLAAIASLTLNQKALARVIPQDQSF--GPGYAGIFHFQFWQHSEWLDVVIDDRLPT 144
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
+L FL S ++FW LLEKAYAKL+GSYEALK G+ ++ + D TGG+ E+ ++
Sbjct: 145 FRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQTKEA 204
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P + +L K L SL+ C I + + G
Sbjct: 205 PENFYEILEKALKRGSLLGCF-----------------------IDTRSAAESEARTPFG 241
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ G Y + ++++ + G+ ++L+++RNP G E+ G+WS S W +V +++ L
Sbjct: 242 LIKGHAYSVTGIDQVS-FRGQRIELIRIRNP-WGQVEWNGSWSDSSPEWRSVGPAEQKRL 299
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHLDSETSRDEPSLH 296
L DGEFW+++ DF F +E+ +L + +E ++H
Sbjct: 300 CHTALDDGEFWMAFKDFKAHFDKVEICNLTPDAL-EEDAIH 339
Score = 79.1 bits (194), Expect = 4e-16
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
++ G+ ++L+++RNP G E+ G+WS S W +V +++ L L DGEFW+++ D
Sbjct: 257 SFRGQRIELIRIRNP-WGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKD 315
Query: 563 FLKAFTHLEVVHLDSETSRDEPSLH 587
F F +E+ +L + +E ++H
Sbjct: 316 FKAHFDKVEICNLTPDAL-EEDAIH 339
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor,
alpha-ketoamide, hydrolase, thiol protease; HET: K2Z;
1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A*
2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A
2ary_A 1zcm_A* 1mdw_A
Length = 339
Score = 199 bits (508), Expect = 5e-59
Identities = 101/275 (36%), Positives = 155/275 (56%), Gaps = 28/275 (10%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ + +RVVP QSF + YAG+F F+LW GEWV+V+VDD LPT
Sbjct: 88 GDCWLLAAIASLTLNETILHRVVPYGQSF--QEGYAGIFHFQLWQFGEWVDVVVDDLLPT 145
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
+GKL F+ S ++FW LLEKAYAK++GSYEAL G + D TGG+TE +++
Sbjct: 146 KDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKA 205
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P+ +++ K L+ SL+ C I + R
Sbjct: 206 PSDLYQIILKALERGSLLGC-----------------------SINISDIRDLEAITFKN 242
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ G Y + +++ TY G+ V L+++RNP G E+ G WS +S W+ V +++E L
Sbjct: 243 LVRGHAYSVTDAKQV-TYQGQRVNLIRMRNP-WGEVEWKGPWSDNSYEWNKVDPYEREQL 300
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHLDSETSR 290
V+ + DGEFW+S+ DF++ FT LE+ +L +
Sbjct: 301 RVK-MEDGEFWMSFRDFIREFTKLEICNLTPDLEH 334
Score = 71.3 bits (174), Expect = 2e-13
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 495 SCACMEIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADG 554
S + TY G+ V L+++RNP G E+ G WS +S W+ V +++E L V+ + DG
Sbjct: 250 SVTDAKQVTYQGQRVNLIRMRNP-WGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDG 307
Query: 555 EFWISYADFLKAFTHLEVVHLDSETSR 581
EFW+S+ DF++ FT LE+ +L +
Sbjct: 308 EFWMSFRDFIREFTKLEICNLTPDLEH 334
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease,
thiol protease; 1.45A {Homo sapiens}
Length = 148
Score = 123 bits (309), Expect = 4e-33
Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 22/169 (13%)
Query: 267 ISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNPETF 326
+ + + V R P K G W G +AGGC N ET
Sbjct: 1 MGSSHHHHHHSSGLV-------PRGSPYTLSKR------INGKW-SGQSAGGCGNFQETH 46
Query: 327 HINPQLHLILSELEEVIISLNQHSIMEPKVIGFTGYSLPKSSSENTGRAFFKKNKSLVNS 386
NP + + ++I L +GF ++ + + F +K+ +
Sbjct: 47 KNNPIYQFHIEKTGPLLIELRGPRQYS---VGFEVVTVS-TLGDPGPHGFLRKS----SG 98
Query: 387 QYTNSRQVSHRCQLEQGSYLVLPTTFEPGQESGFTLRVYSSNPLKLKLL 435
Y + G + ++P+TF P QE F L S P+K+ L
Sbjct: 99 DYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFLDFNSIIPIKITQL 147
Score = 36.0 bits (83), Expect = 0.010
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 14/57 (24%)
Query: 558 ISYADFLKAFTHLEVVHLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
+ + + V R P K G W G +AGGC N
Sbjct: 1 MGSSHHHHHHSSGLV-------PRGSPYTLSKR------INGKW-SGQSAGGCGNFQ 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 2e-12
Identities = 102/644 (15%), Positives = 181/644 (28%), Gaps = 260/644 (40%)
Query: 101 AKLHGSYEALKYGTMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMTSLITCTVQSS 160
L+ + + TE + +PT+ L+ K L S + +
Sbjct: 24 TASFFIASQLQ-----EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 161 QPQPV---GLVEFRRS----------------------------------SRTIRRIPDT 183
Q V L EF +R + + P
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 184 KTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGG---EYIGAWSRD 240
K + NS L + G N +L A+ GG G +Y
Sbjct: 139 K-KSNS-ALFRAVGEG-NAQLVAI-------------------FGGQGNTDDY------- 169
Query: 241 SSNWDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLD--SETSRDEPSLHHK 298
++ E L + + +Y + L T+ D + +
Sbjct: 170 ---FE-------E------LR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 299 NTWQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEEVIISLNQ--HSIMEPKV 356
+ + + W NP + +L+ + +I + Q H ++ K+
Sbjct: 212 G---LNILE--WLE---------NPSNTP--DKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 357 IGFTGYSLPKSSSENTGRAFFKKNKSLV-----------NSQYTNSRQVSH-------RC 398
+GFT L TG + + LV S + + R+ RC
Sbjct: 256 LGFTPGELRSYLKGATGHS-----QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 399 QLEQGSYLVLPTTFEPGQESGFT-----LRVYSSNPLKL-KLLD----SLPS-------- 440
+ + P+ E E+ L + + ++ ++ LP+
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 441 -------V----------LKSAI--VKAPSSLD-TKS-FSQ----YEAVFLQLADEHRTV 475
V L + KAPS LD ++ FS+ + FL V
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-------PV 423
Query: 476 NA-F------ELQELLDACLPNDYIKSCAC-MEI---ETYDGEPVQ---------LVK-- 513
+ F +L++ L + + A ++I +T+DG ++ +V
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 514 LRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVV 573
+R P+ W+ KA TH+
Sbjct: 484 IRLPV---------------KWET-----------------------TTQFKA-THI--- 501
Query: 574 HLD---SETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNP 614
LD S L H+N GT R + AG NP
Sbjct: 502 -LDFGPGGASGLGV-LTHRNK------DGTGVRVIVAGTLDINP 537
Score = 52.0 bits (124), Expect = 5e-07
Identities = 67/393 (17%), Positives = 121/393 (30%), Gaps = 111/393 (28%)
Query: 247 VSAHDKETLGVRHLADGE----FWISYADFLKA------FTHLEVVHLDSETSRDEPS-- 294
+ A+ L + H G + A F A F + + + DEP+
Sbjct: 1 MDAYSTRPLTLSH---GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 295 --LHHKNTWQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEEVIISLNQ-HSI 351
L K F G + + + L+L L+E E + N H++
Sbjct: 58 AELVGK-------FL-----GYVSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 352 MEPKVIGFTGYSLPKSSSENTGRAFFKKNKSLVNSQYTNSRQVSHR-CQLEQGSYLV--- 407
L + + K K L+ + Y +R ++ R + S L
Sbjct: 105 A---------AKLLQEN-----DTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAV 149
Query: 408 ------LPTTFEPGQ---ESGFT-LR-VYSS-NPLKLKLLDSLPSVLKSAIVKAPSSLDT 455
L F GQ + F LR +Y + + L L+ L +++ +
Sbjct: 150 GEGNAQLVAIF-GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAE- 206
Query: 456 KSFSQYEAVFLQLADEHRTVNAFELQELL---DACLPNDYIKSC------------ACME 500
K F+Q + E L DY+ S A
Sbjct: 207 KVFTQ----------------GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 501 I--ETYDGEPVQLVK-LRNPLGGGGEYIGAWS-RDSSNWDAVSAHDKETLGVRHLADGEF 556
+ + P +L L+ G + A + ++ +W+ S + L F
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVL----F 304
Query: 557 WISYADFLKAFTHLEV---VHLDS-ETSRDEPS 585
+I +A+ + + + DS E + PS
Sbjct: 305 FIGVR-CYEAYPNTSLPPSILEDSLENNEGVPS 336
Score = 40.0 bits (93), Expect = 0.003
Identities = 68/385 (17%), Positives = 112/385 (29%), Gaps = 158/385 (41%)
Query: 3 WLVSC--LGVLYLSKGDKWLVSCL-GVLYLSKGLFYRVVPA----DQSFSSPDQYAGVFR 55
++V+ LG + G+ L S L G S+GL V A +SF
Sbjct: 249 YVVTAKLLG---FTPGE--LRSYLKGATGHSQGLVTAVAIAETDSWESFF--VSVRKAIT 301
Query: 56 FRLWWCGEWVEVLVDDRLPTVNGKLAFLQSVHSDQFWPGLLEKAYAKLHG--SYEALKYG 113
L++ G V A+ + P +LE + G S
Sbjct: 302 V-LFFIG-------------VRCYEAYPNT----SLPPSILEDSLENNEGVPSP------ 337
Query: 114 TMLDGLADLTGGITESISIRQDPTSSGRLLNKLLDMT-----SLI---TCTVQSSQPQPV 165
ML +++LT + + + N L SL+ V S PQ
Sbjct: 338 -ML-SISNLTQEQVQDY-VNK--------TNSHLPAGKQVEISLVNGAKNLVVSGPPQ-- 384
Query: 166 GLVEFRRSSRTIR--------RIPDTKTRP-------------NSEKLANGIQI------ 198
L + R + RIP ++ + +S L +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 199 --GINYRLYALERI---ETYDGEPVQ---------LVK--LRNPLGGGGEYIGAWSRDSS 242
+++ + +I +T+DG ++ +V +R P+
Sbjct: 445 KNNVSFNAKDI-QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV--------------- 488
Query: 243 NWDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLD---SETSRDEPSLHHKN 299
W+ KA TH+ LD S L H+N
Sbjct: 489 KWET-----------------------TTQFKA-THI----LDFGPGGASGLGV-LTHRN 519
Query: 300 TWQMRLFQGTWQRGVTAGGCRNNPE 324
GT R + AG NP+
Sbjct: 520 K------DGTGVRVIVAGTLDINPD 538
Score = 38.1 bits (88), Expect = 0.009
Identities = 41/242 (16%), Positives = 72/242 (29%), Gaps = 70/242 (28%)
Query: 394 VSHR-CQLEQGSY---LVLPT-----------TFE---PGQESGFTLRVYSSNPLKL--K 433
S R L GS L++PT F P GF + P +L K
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 434 LLDSLPSVLKSAIVKAPSSLDTKSFSQYEAVFLQLADEHRTVNAFELQELLDACLPND-- 491
L + S+++ + V + +++E +L+ D H + A +L + D L
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-AL-AAKLLQENDTTLVKTKE 121
Query: 492 ----YIKSCACMEIETYDGEPVQL--------VKLRNPLGGGG---EYIGAWSRDSSNWD 536
YI + + L +L GG G +Y ++
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY----------FE 171
Query: 537 AVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLD--SETSRDEPSLHHKN---- 590
E L + + +Y + L T+ D + +
Sbjct: 172 -------E------LR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 591 TW 592
W
Sbjct: 217 EW 218
Score = 30.4 bits (68), Expect = 2.2
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 19/66 (28%)
Query: 102 KLHGSYEALKYGTMLDGLAD---LTGGITESIS--IRQDPTSSGRLLNKLLDMTSLITCT 156
++ +Y A+ + T++DG + I E + + LL T
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-------KGLLSAT------ 1729
Query: 157 VQSSQP 162
Q +QP
Sbjct: 1730 -QFTQP 1734
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 5e-05
Identities = 86/592 (14%), Positives = 171/592 (28%), Gaps = 177/592 (29%)
Query: 41 DQSFSSPDQYAGVFRFRLWWC-----GEWVEVLVDDRLPTVNGKLAFLQS-VHSDQFWPG 94
D S D +G R L+W E V+ V++ L FL S + ++Q P
Sbjct: 52 DHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVL---RINYKFLMSPIKTEQRQPS 106
Query: 95 LLEKAYA----KLHGSYEAL-KY----------------------GTMLDGLADLTGGIT 127
++ + Y +L+ + KY ++DG+ G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSG 162
Query: 128 ES----------------------ISIRQDPTSSGRLLNKLLDMTSLITCTVQS----SQ 161
++ ++++ S +L L + I S S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 162 PQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANGIQIGINYRLYAL------ERIETYDG 215
+ + + +RR+ +K N L L + ++
Sbjct: 222 NIKLRIHSIQAE---LRRLLKSKPYENC--------------LLVLLNVQNAKAWNAFNL 264
Query: 216 EPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYA-DFLK 274
L+ +R D +SA + + H + L
Sbjct: 265 SCKILLT---------------TRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLL 308
Query: 275 AFTHLEVVHLDSETSRDEP---SL------HHKNTWQMRLFQGTWQRGVTAGGCRNN--- 322
+ L E P S+ TW + N
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 323 -------------PETFHINPQLHLIL------SELEEVIISLNQHSIMEPKVIGFTGYS 363
P + HI L ++ S++ V+ L+++S++E + T S
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-IS 427
Query: 364 LP------KSSSENTGRAFFKKNKSLVNSQYTNSRQV-SHRCQLEQG-----SYLV--LP 409
+P K EN + ++S+V+ Y + S S++ L
Sbjct: 428 IPSIYLELKVKLENE----YALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 410 TTFEPGQESGFTLRVYSSNPLKLKLLDSLPSVLKSAIVKAPSSLDT-KSFSQYEAVFLQL 468
E + V+ L + L+ +A + S L+T + Y+
Sbjct: 483 NI-EHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK------ 531
Query: 469 ADEHRTVNAFELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPLGG 520
+ N + + L++A L D++ I + + +++ L
Sbjct: 532 --PYICDNDPKYERLVNAIL--DFLPKIEENLICSKYTDLLRIA-LMAEDEA 578
Score = 37.1 bits (85), Expect = 0.022
Identities = 56/399 (14%), Positives = 102/399 (25%), Gaps = 133/399 (33%)
Query: 283 HLDSETSRDEPSLHHKNTWQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEEV 342
H+D ET ++ + +F+ + C+ + ILS+ EE+
Sbjct: 6 HMDFETGE----HQYQYKDILSVFEDAFVDNFD---CK------DVQDMPKSILSK-EEI 51
Query: 343 IISLNQHSIMEPKVIGFTGY--SLPKSSSENTGRAFFKKNKSLVNSQYTNSRQVSHRCQL 400
H IM + T S E + F + ++ Y
Sbjct: 52 -----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRINY------------ 91
Query: 401 EQGSYLVLPTTFEPGQESGFTL-------RVYSSNP---------------LKLKLLDSL 438
+L+ P E Q S T R+Y+ N L+ LL+
Sbjct: 92 ---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 439 P--------------SVLKSAIVKAPSSLDTKSFSQYEAVF-LQLADEHRTVNAFELQEL 483
P + + + + F +F L L + + E+ +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF----KIFWLNLKNCNSPETVLEMLQK 204
Query: 484 LDACLPNDYIKSCACM-----EIETYDGEPVQLVKLRNPLGGGGEYIGA-------W--- 528
L + ++ I + E +L+K + Y
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------PYENCLLVLLNVQNAK 257
Query: 529 --------------SRDSSNWDAVSAHDKETLGVRHLADGEFWISYA-DFLKAFTHLEVV 573
+R D +SA + + H + L +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQ 316
Query: 574 HLDSETSRDEP---SL------HHKNTWQMRLFQGTWQR 603
L E P S+ TW W+
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWD------NWKH 349
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 39.9 bits (93), Expect = 7e-04
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 459 SQYEAVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACME 500
+ L ++A +LQ LL+ L ++
Sbjct: 5 HHHHHHSSGLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLD 46
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 38.6 bits (90), Expect = 0.003
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 20/126 (15%)
Query: 449 APSSLDTKSFSQYEAVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIETYDGEP 508
+ ++ F +A + ++A ELQ L K
Sbjct: 23 GGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCR------ 76
Query: 509 VQLVKLRNPLGGG----GEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADFL 564
+V + + G E+ W+ + + D + G + +
Sbjct: 77 -LMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGT---------VDPQELQ 126
Query: 565 KAFTHL 570
KA T +
Sbjct: 127 KALTTM 132
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 37.0 bits (86), Expect = 0.007
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 34/143 (23%)
Query: 459 SQYEAVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPL 518
Q+ +F QLA + V+A EL +L+ + I+T +V + +
Sbjct: 4 RQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCR----SMVAVMDSD 59
Query: 519 GGG----GEYIGAWSRDSSNWDAVSAHDKE---TLGVRHL-------------------- 551
G E+ W+ D + T+G L
Sbjct: 60 TTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMII 119
Query: 552 ---ADGEFWISYADFLKAFTHLE 571
+D + + +F+ L+
Sbjct: 120 RRYSDEGGNMDFDNFISCLVRLD 142
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 34.7 bits (80), Expect = 0.037
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 20/112 (17%)
Query: 463 AVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPLGGG- 521
F +A + ++A ELQ L K +V + + G
Sbjct: 6 GYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCR-------LMVSMLDRDMSGT 58
Query: 522 ---GEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHL 570
E+ W+ + + D + G + + KA T +
Sbjct: 59 MGFNEFKELWAVLNGWRQHFISFDSDRSGT---------VDPQELQKALTTM 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.10
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 11/31 (35%)
Query: 417 ESGFTLRVYSSNPLKLKLLDSLPSV-LKSAI 446
++ +L++Y+ DS P++ +K+ +
Sbjct: 26 QA--SLKLYA--D------DSAPALAIKATM 46
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 33.1 bits (76), Expect = 0.12
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 463 AVFLQLADEHRTVNAFELQELLDACLPNDY 492
F +A + V+A ELQ L N
Sbjct: 4 TYFSAVAGQDGEVDAEELQRCLTQSGINGT 33
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain
swapping, protein-protein interaction, alpha and beta
protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB:
3ux3_A
Length = 130
Score = 32.2 bits (73), Expect = 0.15
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 430 LKLKLLDSLPSVLKSAIVKAPSSLDTKSFSQYEAVFLQLADEHRTVNAFE---LQELLDA 486
L++KL LP K I + + S E + Q+ D+ R A E L+E+++
Sbjct: 73 LRVKLQRCLPFKHKLEIYISEGTH-----STEEDINKQINDKERVAAAMENPNLREIVEQ 127
Query: 487 CL 488
C+
Sbjct: 128 CV 129
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.89
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 33/158 (20%)
Query: 119 LADLTGGITESISIRQDPTSSGRLLNKLLDMTSLIT--------CTVQSSQPQPVGLVEF 170
+ADL GG+ +++ + L + ++ ++ +S VE
Sbjct: 724 MADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEI 783
Query: 171 RRSSRTIRRIPDTKTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQLVKLRNPLGGG 230
+ + P+ K +++A G L LER+ V + G
Sbjct: 784 QPRANIQLDFPELKPYKQVKQIAPAELEG----LLDLERV------IV-VT-------GF 825
Query: 231 GEYIGAWSRDSSNWDAVSAHDKETL-GVRHLADGEFWI 267
E +G W + W+ A + +L G +A WI
Sbjct: 826 AE-VGPWGSARTRWEM-EAFGEFSLEGCVEMA----WI 857
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 28.9 bits (64), Expect = 3.5
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 9/88 (10%)
Query: 311 QRGVTAGGCRNNPETFHINPQLHLILSELEEVIISLNQHSIMEPKVIGFTGYSLPKSSSE 370
V G N E + +L L + K +T K
Sbjct: 41 MTLVNNGFIAPNTELVTDDVTYYLSLK---------LLGGKKKKKKKSYTTKKKTKHRHV 91
Query: 371 NTGRAFFKKNKSLVNSQYTNSRQVSHRC 398
+T K N + + ++ +C
Sbjct: 92 HTKLGALAFYKLENNGKVSLQQKGCPKC 119
>2ooi_A SA0254 protein; staphylocococcus aureus, structural genomics,
PSI-2, MCSG, P structure initiative; 2.60A
{Staphylococcus aureus subsp} SCOP: d.190.1.2
Length = 162
Score = 28.1 bits (63), Expect = 5.0
Identities = 7/52 (13%), Positives = 21/52 (40%)
Query: 169 EFRRSSRTIRRIPDTKTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQL 220
T + + + + + + +Q+ + +Y LER+ D + + +
Sbjct: 14 SLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCI 65
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 6.5
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 15/72 (20%)
Query: 472 HRTVNAFELQE--------LLDACLPNDYIKSCACMEI---ETYDGEPVQLVKLRNPLGG 520
R V+ EL + L+ A P + I +E+ E E + + +
Sbjct: 145 IRIVSGLELSDTKQKGKKFLVIAYEPFENI----AIELPPNEILFSENNDMDNNNDGVDE 200
Query: 521 GGEYIGAWSRDS 532
+ W S
Sbjct: 201 LNKKCTFWDAIS 212
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural
genomics, unknown function; 1.75A {Staphylococcus aureus
subsp} SCOP: b.26.1.4 b.26.1.4
Length = 238
Score = 28.2 bits (62), Expect = 8.3
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 150 TSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTK 184
+SLI T + Q + RS R I R P
Sbjct: 181 SSLIRLTQEMPHAQADDYNTYHRSPRIIHREPTDD 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.415
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,538,608
Number of extensions: 565001
Number of successful extensions: 980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 44
Length of query: 614
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 515
Effective length of database: 3,937,614
Effective search space: 2027871210
Effective search space used: 2027871210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)