RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1391
(614 letters)
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 322
Score = 204 bits (519), Expect = 3e-61
Identities = 101/269 (37%), Positives = 155/269 (57%), Gaps = 28/269 (10%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ + +RVVP QSF + YAG+F F+LW GEWV+V+VDD LPT
Sbjct: 81 GDCWLLAAIASLTLNETILHRVVPYGQSF--QEGYAGIFHFQLWQFGEWVDVVVDDLLPT 138
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
+GKL F+ S ++FW LLEKAYAK++GSYEAL G + D TGG+TE +++
Sbjct: 139 KDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKA 198
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P+ +++ K L+ SL+ C++ S R
Sbjct: 199 PSDLYQIILKALERGSLLGCSINISDI-----------------------RDLEAITFKN 235
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ G Y + +++ TY G+ V L+++RNP G E+ G WS +S W+ V +++E L
Sbjct: 236 LVRGHAYSVTDAKQV-TYQGQRVNLIRMRNPW-GEVEWKGPWSDNSYEWNKVDPYEREQL 293
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHL 284
V+ + DGEFW+S+ DF++ FT LE+ +L
Sbjct: 294 RVK-MEDGEFWMSFRDFIREFTKLEICNL 321
Score = 81.8 bits (201), Expect = 1e-17
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
TY G+ V L+++RNP G E+ G WS +S W+ V +++E L V+ + DGEFW+S+ D
Sbjct: 251 TYQGQRVNLIRMRNPWGEV-EWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRD 308
Query: 563 FLKAFTHLEVVHL 575
F++ FT LE+ +L
Sbjct: 309 FIREFTKLEICNL 321
>d1mdwa_ d.3.1.3 (A:) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 323
Score = 203 bits (516), Expect = 9e-61
Identities = 96/269 (35%), Positives = 144/269 (53%), Gaps = 28/269 (10%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ + RVVP DQSF + YAG+F F+ W GEWVEV+VDDRLPT
Sbjct: 82 GDSWLLAAIASLTLNEEILARVVPLDQSF--QENYAGIFHFQFWQYGEWVEVVVDDRLPT 139
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
+G+L F+ S +FW LLEKAYAK++G YEAL G +G D TGGI E +R+
Sbjct: 140 KDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKP 199
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P + +++ K L+ SL+ C+ I T +
Sbjct: 200 PPNLFKIIQKALEKGSLLGCS-----------------------IDITSAADSEAVTYQK 236
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ G Y + E + G +L+++RNP G E+ G W+ + +W+ V + L
Sbjct: 237 LVKGHAYSVTGAEEV-ESSGSLQKLIRIRNPW-GQVEWTGKWNDNCPSWNTVDPEVRANL 294
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHL 284
DGEFW+S++DFL+ ++ LE+ +L
Sbjct: 295 T-ERQEDGEFWMSFSDFLRHYSRLEICNL 322
Score = 76.4 bits (187), Expect = 9e-16
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 504 YDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADF 563
G +L+++RNP G E+ G W+ + +W+ V + L DGEFW+S++DF
Sbjct: 253 SSGSLQKLIRIRNPWGQV-EWTGKWNDNCPSWNTVDPEVRANLT-ERQEDGEFWMSFSDF 310
Query: 564 LKAFTHLEVVHL 575
L+ ++ LE+ +L
Sbjct: 311 LRHYSRLEICNL 322
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain
(domain II) {Human (Homo sapiens), calpain 9 [TaxId:
9606]}
Length = 310
Score = 197 bits (502), Expect = 7e-59
Identities = 91/269 (33%), Positives = 148/269 (55%), Gaps = 27/269 (10%)
Query: 16 GDKWLVSCLGVLYLSKGLFYRVVPADQSFSSPDQYAGVFRFRLWWCGEWVEVLVDDRLPT 75
GD WL++ + L L++ RV+P DQSF YAG+F F+ W EW++V++DDRLPT
Sbjct: 68 GDCWLLAAIASLTLNQKALARVIPQDQSF--GPGYAGIFHFQFWQHSEWLDVVIDDRLPT 125
Query: 76 VNGKLAFLQSVHSDQFWPGLLEKAYAKLHGSYEALKYGTMLDGLADLTGGITESISIRQD 135
+L FL S ++FW LLEKAYAKL+GSYEALK G+ ++ + D TGG+ E+ ++
Sbjct: 126 FRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQTKEA 185
Query: 136 PTSSGRLLNKLLDMTSLITCTVQSSQPQPVGLVEFRRSSRTIRRIPDTKTRPNSEKLANG 195
P + +L K L SL+ C + + + + G
Sbjct: 186 PENFYEILEKALKRGSLLGCFIDT-----------------------RSAAESEARTPFG 222
Query: 196 IQIGINYRLYALERIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETL 255
+ G Y + ++++ ++ G+ ++L+++RNP G E+ G+WS S W +V +++ L
Sbjct: 223 LIKGHAYSVTGIDQV-SFRGQRIELIRIRNPW-GQVEWNGSWSDSSPEWRSVGPAEQKRL 280
Query: 256 GVRHLADGEFWISYADFLKAFTHLEVVHL 284
L DGEFW+++ DF F +E+ +L
Sbjct: 281 CHTALDDGEFWMAFKDFKAHFDKVEICNL 309
Score = 79.5 bits (195), Expect = 8e-17
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 503 TYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYAD 562
++ G+ ++L+++RNP G E+ G+WS S W +V +++ L L DGEFW+++ D
Sbjct: 238 SFRGQRIELIRIRNPWGQV-EWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKD 296
Query: 563 FLKAFTHLEVVHL 575
F F +E+ +L
Sbjct: 297 FKAHFDKVEICNL 309
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 159
Score = 136 bits (344), Expect = 3e-38
Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 301 WQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE------------VIISLNQ 348
W ++GTW+RG TAGGCRN P TF +NPQ + L E+++ +++L Q
Sbjct: 1 WNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQ 60
Query: 349 HSIMEPK-------VIGFTGYSLPKSSSENT---GRAFFKKNKSLVNSQ-YTNSRQVSHR 397
+ IGF Y +P+ + R FF N S S+ + N R+VS+R
Sbjct: 61 KHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNR 120
Query: 398 CQLEQGSYLVLPTTFEPGQESGFTLRVYSSNPLKLKLLD 436
+L G Y+V+P+TFEP +E F LR +S + LD
Sbjct: 121 IRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELD 159
Score = 45.9 bits (108), Expect = 2e-06
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 592 WQMRLFQGTWQRGVTAGGCRNNP 614
W ++GTW+RG TAGGCRN P
Sbjct: 1 WNTTFYEGTWRRGSTAGGCRNYP 23
>d1df0a2 b.14.1.1 (A:356-514) Calpain large subunit, middle domain
(domain III) {Rat (Rattus norvegicus), M-type [TaxId:
10116]}
Length = 159
Score = 131 bits (330), Expect = 2e-36
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 22/158 (13%)
Query: 301 WQMRLFQGTWQRGVTAGGCRNNPETFHINPQLHLILSELEE----------VIISLNQHS 350
W++ G W+RG TAGGCRN P TF +NPQ + L E +E ++ L Q
Sbjct: 1 WKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKH 60
Query: 351 I-------MEPKVIGFTGYSLPKS----SSENTGRAFFKKNKSLVNSQ-YTNSRQVSHRC 398
+ IGF Y +P+ ++ + + FF ++ S + N R+V +R
Sbjct: 61 RRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRF 120
Query: 399 QLEQGSYLVLPTTFEPGQESGFTLRVYSSNPLKLKLLD 436
+L G Y+++P+TFEP + F +RV+S + +D
Sbjct: 121 KLPPGEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVD 158
Score = 44.0 bits (103), Expect = 8e-06
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 592 WQMRLFQGTWQRGVTAGGCRNNP 614
W++ G W+RG TAGGCRN P
Sbjct: 1 WKLTKMDGNWRRGSTAGGCRNYP 23
>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), M-type
[TaxId: 10116]}
Length = 186
Score = 31.3 bits (70), Expect = 0.24
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 460 QYEAVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIET 503
+ +F QLA E ++AFELQ +L L IET
Sbjct: 19 GFRRLFAQLAGEDAEISAFELQTILRRVLAKREDIKSDGFSIET 62
>d2ooia1 d.190.1.2 (A:73-233) Hypothetical protein SA0254
{Staphylococcus aureus [TaxId: 1280]}
Length = 161
Score = 29.2 bits (65), Expect = 0.87
Identities = 7/52 (13%), Positives = 21/52 (40%)
Query: 169 EFRRSSRTIRRIPDTKTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQL 220
T + + + + + + +Q+ + +Y LER+ D + + +
Sbjct: 14 SLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCI 65
>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain
VI) {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 29.1 bits (64), Expect = 1.0
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 460 QYEAVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIET 503
Q+ +F QLA + V+A EL +L+ + I+T
Sbjct: 5 QFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDT 48
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 245
Score = 29.0 bits (64), Expect = 1.4
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 478 FELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPLGGGGEYIGAWSRDSSNWDA 537
FE + L + + DY E DG L + +P G G ++ +R++ +
Sbjct: 48 FERRHLEETLMQKDYFVC------EKTDGLRCLLFLINDPDKGEGVFL--VTRENDYYFI 99
Query: 538 VSAHDKETLGVRHLADGEFW 557
+ H ++ +
Sbjct: 100 PNIHFPLSV-NETREKPTYH 118
>d3ddva1 d.190.1.2 (A:3-145) Transcriptional regulator EF1328
{Enterococcus faecalis [TaxId: 1351]}
Length = 143
Score = 28.5 bits (63), Expect = 1.5
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 179 RIPDTK-----TRPNSEKLANGIQIGINYRLYALERIETYDGEPVQL 220
R+P ++ S +Q+G + +ERI D P+
Sbjct: 2 RVPSSRTVSYFVAKPSSSEMEKLQLGPEDSILRMERIRFADDIPICF 48
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 28.4 bits (63), Expect = 1.5
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 20/118 (16%)
Query: 465 FLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPLGGGG-- 522
F +A + V+A ELQ L N + ++ + + G
Sbjct: 6 FSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCR-------IMIAMLDRDHTGKMG 58
Query: 523 --EYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHLEVVHLDSE 578
+ W+ ++ + D+ DG + + + +A +
Sbjct: 59 FNAFKELWAALNAWKENFMTVDQ---------DGSGTVEHHELRQAIGLMGYRLSPQT 107
>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), mu-type
[TaxId: 10116]}
Length = 188
Score = 28.5 bits (63), Expect = 1.6
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 460 QYEAVFLQLADEHRTVNAFELQELLDACLPNDYIKSCACMEIETYDGEPVQLVKLRNPLG 519
++ +F +LA + ++ ELQ +L+ + +E+ +V L + G
Sbjct: 21 NFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLESCR----SMVNLMDRDG 76
Query: 520 GGG----EYIGAWSRDSSNWDAVSAHDKETLGVRHLADGEFWISYADFLKAFTHL 570
G E+ W+R + D D +S + A
Sbjct: 77 NGKLGLVEFNILWNRIRNYLTIFRKFDL---------DKSGSMSAYEMRMAIEAA 122
>d3bwga2 d.190.1.2 (A:89-233) Transcriptional regulator YydK
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 26.9 bits (59), Expect = 3.8
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 169 EFRRSSRTIRRIPDTKTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQL 220
+F +S+ I R + + A + IG++ +Y ++R+ +G+ +
Sbjct: 1 DFNVTSKVIEL----DVRKPTPEAAENLNIGMDEDIYYVKRVRYINGQTLCY 48
>d1gppa_ b.86.1.2 (A:) VMA1-derived endonuclease (VDE) PI-Scei
intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 229
Score = 26.8 bits (59), Expect = 6.3
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 187 PNSEKLANGIQIGINY---RLYALERIETYDGEPVQLVKLRN---PLGGGGE-------- 232
P S + + G+ Y + + + + DG V+LVK + P+ G E
Sbjct: 88 PRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPVSEGPERANELVES 147
Query: 233 YIGAWSRDSSNWDAVSAHDKETLG 256
Y A ++ W + A D LG
Sbjct: 148 YRKASNKAYFEWT-IEARDLSLLG 170
>d2p19a1 d.190.1.2 (A:2-149) Transcriptional regulator
Cgl0157/Cg0196 {Corynebacterium glutamicum [TaxId:
1718]}
Length = 148
Score = 26.1 bits (57), Expect = 8.9
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 179 RIPDTKTRPNSEKLANGIQIGINYRLYALERIETYDGEPVQL 220
R+ + + S +A + + + + R+ + PV +
Sbjct: 10 RVLEHRLLAASSAIAEKLGVSAGDEVLLIRRLRSTGDIPVAI 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.415
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,341,998
Number of extensions: 108175
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 20
Length of query: 614
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 523
Effective length of database: 1,158,166
Effective search space: 605720818
Effective search space used: 605720818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)