BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13911
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 16 LNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLP 72
L++ N LK LP + +E L +LYL N L + G NK L L+++ N + SLP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 73 DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ ++++EL L+ N + SLP+ + L+ LRL+ N L S P
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
Q L + N++ SLP+ + + +L L GN + SLPN + L L L +N L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 117 TSCPTLYLS--SSLRVLDLSYNHLERL 141
S P + L+ L L+ N L+ L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSL 115
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 39 LYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
L L +N+L + G ++ L L++ N + SLP+ + + + L LS N + SLP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 97 NTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDL 133
N + L+ L L++N L S P ++ DL
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 30/171 (17%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
LQNSS LK++++ N LK LP L LE + +N L ++ L L ++ N
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPN------------------TIPQSWPHLRV 108
++ LPD +S +E +V N + LP T+P P L
Sbjct: 206 SLKKLPDLPLS----LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261
Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L + N+LT P L SL LD+S N L + +P L YL+ S N
Sbjct: 262 LNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL---SELPPNLYYLNASSN 307
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
L+ LN+S N L LP+L LE+L + N L ++ L + L LHV YN + P
Sbjct: 319 LEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFP 373
Query: 73 DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS------S 126
D S +E+L ++ + ++ +P +PQ +L+ L + +N L P + S +
Sbjct: 374 DIPES----VEDLRMNSH-LAEVP-ELPQ---NLKQLHVETNPLREFPDIPESVEDLRMN 424
Query: 127 SLRVLD 132
S RV+D
Sbjct: 425 SERVVD 430
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
EL L+ G+SSLP + PHL L N LT P L SL+ L + N+L+ L
Sbjct: 75 ELELNNLGLSSLP----ELPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKAL-- 126
Query: 144 NTLIPKQLQYLDVSGN 159
+ +P L+YL VS N
Sbjct: 127 -SDLPPLLEYLGVSNN 141
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
+++ + N+S +K S ++ LP++ RYL L N L DI L + L L
Sbjct: 42 SIDQIIANNSDIK----SVQGIQYLPNV----RYLA---LGGNKLHDISALKELTNLTYL 90
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
+ N + SLP+ + ++ELVL N + SLP+ + +L L L N L S P
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 122 LYLS--SSLRVLDLSYNHLERL 141
++L LDLSYN L+ L
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSL 172
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
L+ + L L ++ N L+ LP + ++ L++L L N L + G +K L L++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
A+N + SLP + + EL LS N + SLP + L+ LRL+ N L S P
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
+ LK L + +N L+ LP + ++ L L L N L + G +K L L ++YN
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTL-YLS 125
+ SLP+ +++++L L N + S+P+ + L+ + LH N +CP + YLS
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 228
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 39 LYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
L LT N L + G +K L L + N + SLPD + + L L+ N + SLP
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 97 NTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDL 133
+ +L L L N L S P ++ DL
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 17/173 (9%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYN 66
S+ ++LN+ +N ++++ + ++ R+LE L L+ N + +IG N LNTL + N
Sbjct: 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
+T++P+ S+++EL L N I S+P+ P LR L L S Y+S
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS----YISE 178
Query: 126 ------SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
S+LR L+L+ +L + NL LI +L LD+SGN + P F+
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPLI--KLDELDLSGNHLSAIRPGSFQG 229
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTL 61
E + S L+ LN++ L+ +P+L + L++L L+ N L+ I G L L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCP 120
+ + I + N + E+ L+ N ++ LP+ + HL + LH N +C
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296
Query: 121 TLYLS 125
L+LS
Sbjct: 297 ILWLS 301
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 11 SKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTD--IGPLNKCRQLNTLHVAYNA 67
+KL++L ++ N L+ LP+ + E + LE L++T N L IG ++ L L + N
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-- 125
+ SLP + +++ L L N + SLP + L+ LRL++N L P
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 126 SSLRVLDLSYNHLERL 141
+ L+ L L N L+R+
Sbjct: 181 TELKTLKLDNNQLKRV 196
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 37 EKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
+KL L SN L+ + ++ +L L++ N + +LP +E L ++ N + +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERL 141
LP + +L LRL N L S P S L L L YN L+ L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
G + +L TL +A N + SLP +++++L L GN + SLP+ + L+ L
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 110 RLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERL 141
RL++N L S P ++L+ L LS N L+ +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
++L L ++ N L LP + + L+KLYL N L + G ++ +L L + N
Sbjct: 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL--TSCPTLYLS 125
+ S+P + ++ L LS N + S+P+ L+ + L N + C LYLS
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLS 202
Query: 126 SSLR 129
+R
Sbjct: 203 QWIR 206
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 11 SKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
+KL LN+ N L+ L + ++ L L L +N L + G + QL+ L++ N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ SLP ++++EL L+ N + S+P +L+ L L +N L S P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 37 EKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
EKL L S L + +L L++ YN + +L +E+ L L+ N ++S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERL 141
LP + L L L N L S P+ + L+ L L+ N L+ +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
G + +L TL +A N + SLP +++++L L GN + SLP+ + L+ L
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 110 RLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERL 141
RL++N L S P ++L+ L LS N L+ +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
++L L ++ N L LP + + L+KLYL N L + G ++ +L L + N
Sbjct: 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL--TSCPTLYLS 125
+ S+P + ++ L LS N + S+P+ L+ + L N + C TLYLS
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLS 202
Query: 126 SSLR 129
+R
Sbjct: 203 QWIR 206
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 11 SKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
+KL LN+ N L+ L + ++ L L L +N L + G + QL+ L++ N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ SLP ++++EL L+ N + S+P +L+ L L +N L S P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 37 EKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
EKL L S L + +L L++ YN + +L +E+ L L+ N ++S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERL 141
LP + L L L N L S P+ + L+ L L+ N L+ +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 14 KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYNAITS 70
+ LN+ +N ++++ + ++ R+LE L L+ N + ++G N LNTL + N +T+
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS--- 127
+P S++ EL L N I S+P+ P LR RL L Y+S +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR--RLDLGELKRLE--YISEAAFE 153
Query: 128 ----LRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
LR L+L +L+ + NL L+ +L+ L++SGN + P F+ S ++++
Sbjct: 154 GLVNLRYLNLGMCNLKDIPNLTALV--RLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTL 61
E + L+ LN+ LK +P+L R LE+L L+ N L I G L L
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNLTALVR-LEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH---LTS 118
+ + + ++ N +EEL LS N + SLP+ + P R+ R+H NH +
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT--PLHRLERVHLNHNPWHCN 265
Query: 119 CPTLYLSSSLR 129
C L+LS L+
Sbjct: 266 CDVLWLSWWLK 276
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
+++ + N+S +K S ++ LP++ RYL L N L DI L + L L
Sbjct: 42 SIDQIIANNSDIK----SVQGIQYLPNV----RYLA---LGGNKLHDISALKELTNLTYL 90
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
+ N + SLP+ + ++ELVL N + SLP+ + +L L L+ N L S P
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK 150
Query: 122 LYLS--SSLRVLDLSYNHLERL 141
++L LDL N L+ L
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSL 172
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 14 KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYNAITS 70
+ LN+ +N ++++ + ++ R+LE L L+ N + ++G N LNTL + N +T+
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS--- 127
+P S++ EL L N I S+P+ P LR RL L Y+S +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR--RLDLGELKRLE--YISEAAFE 153
Query: 128 ----LRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
LR L+L +L+ + NL L+ +L+ L++SGN + P F+ S ++++
Sbjct: 154 GLVNLRYLNLGMCNLKDIPNLTALV--RLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTL 61
E + L+ LN+ LK +P+L R LE+L L+ N L I G L L
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNLTALVR-LEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH---LTS 118
+ + + ++ N +EEL LS N + SLP+ + P R+ R+H NH +
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT--PLHRLERVHLNHNPWHCN 265
Query: 119 CPTLYLSSSLR 129
C L+LS L+
Sbjct: 266 CDVLWLSWWLK 276
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
+L L ++++L+V++ P+ +L L+L L ++GP L L
Sbjct: 83 QLDLSDNAQLRVVD---------PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC-P 120
++ N + +LPDN + L L GN I S+P + L L LH NH+ P
Sbjct: 134 YLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 121 TLYLS-SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+ L L L N+L L L+P + LQYL ++ NP
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNP 235
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 37 EKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
++++L N ++ + CR L L + NA+ + + + +E+L LS N +
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN--AQ 91
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSC------PTLYLS-SSLRVLDLSYNHLERLNLNTLI 147
L P ++ L LH+ HL C P L+ ++L+ L L N+L+ L NT
Sbjct: 92 LRVVDPTTFRGLG--HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 148 P-KQLQYLDVSGNPRLHVDPNH-FKSYRSYVRVYI 180
L +L + GN R+ P H F+ S R+ +
Sbjct: 150 DLGNLTHLFLHGN-RIPSVPEHAFRGLHSLDRLLL 183
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 36/154 (23%)
Query: 63 VAYN---AITSLPDNCISAW-----SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
V YN TS P + A + + + L GN IS +P QS +L +L LHSN
Sbjct: 6 VCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSN 65
Query: 115 HLTSCPTLYLS--SSLRVLDLSYN--------------------HLERLNLNTLIP---- 148
L + + L LDLS N HL+R L L P
Sbjct: 66 ALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFR 125
Query: 149 --KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
LQYL + N + N F+ + +++
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N+LT
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 209
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L V++N +TSLP + E++EL L GN + +LP + P L L L +N LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 118 SCPTLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
P L+ +L L L N L + L + + GNP L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 11 SKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL--TDIGPLNKCRQLNTLHVAYNA 67
S + LN+ +N ++M+ + + +LE L L N++ ++G N LNTL + N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS 127
+T +P S++ EL L N I S+P+ P L +RL L + +
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL--MRLDLGELKKLEYISEGAF 192
Query: 128 LRVLDLSYNHLERLNLN---TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180
+ +L Y +L N+ L P L+ L++SGN + P F S ++++
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS 70
LK LN+ +K +P+L LE+L ++ N +I G + L L V + ++
Sbjct: 198 LKYLNLGMCNIKDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCPTLYLSSSLR 129
+ N + + EL L+ N +SSLP+ + +L L LH N C L+L+ LR
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLR 316
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
L L+L L ++GP L L++ NA+ +LPD+ + L L GN IS
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
Query: 94 SLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLS-SSLRVLDLSYNHLERLNLNTLIP-KQ 150
S+P + L L LH N + P + L L L N+L L L P +
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 151 LQYLDVSGNP 160
LQYL ++ NP
Sbjct: 226 LQYLRLNDNP 235
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 36 LEKLYLTSNAL---TDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92
LE+L L+ NA D + +L+TLH+ + L + ++ L L N +
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+LP+ + +L L LH N ++S P
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVP 168
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
L L+L L ++GP L L++ NA+ +LPD+ + L L GN IS
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 94 SLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLS-SSLRVLDLSYNHLERLNLNTLIP-KQ 150
S+P + L L LH N + P + L L L N+L L L P +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 151 LQYLDVSGNP 160
LQYL ++ NP
Sbjct: 227 LQYLRLNDNP 236
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 36 LEKLYLTSNAL---TDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92
LE+L L+ NA D + +L+TLH+ + L + ++ L L N +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+LP+ + +L L LH N ++S P
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVP 169
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 16/138 (11%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
S L+ L++S N L LP+L +E L KL+ +N LT + L L L V+ N +TS
Sbjct: 181 SGLQELSVSDNQLASLPTLPSE---LYKLWAYNNRLTSLPALPSG--LKELIVSGNRLTS 235
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSL 128
LP SE++EL++SGN ++SLP +P L L ++ N LT P ++LSS
Sbjct: 236 LP----VLPSELKELMVSGNRLTSLP-MLPSG---LLSLSVYRNQLTRLPESLIHLSSET 287
Query: 129 RVLDLSYNHLERLNLNTL 146
V +L N L L L
Sbjct: 288 TV-NLEGNPLSERTLQAL 304
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
L+V + +T+LPD C+ A + LV+ N ++SLP +P P LR L + N LTS P
Sbjct: 45 LNVGESGLTTLPD-CLPA--HITTLVIPDNNLTSLP-ALP---PELRTLEVSGNQLTSLP 97
Query: 121 TL 122
L
Sbjct: 98 VL 99
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 38 KLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
+L L SN L + G +K QL L ++ N I SLPD +++ L L N + SL
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCP 120
PN + L+ L L +N L S P
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVP 116
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 16 LNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLP 72
L + N L+ LP + ++ L KL L+ N + + G +K +L L++ N + SLP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 73 DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCPTL-YLS 125
+ ++++EL L N + S+P+ I L+ + LH+N SCP + YLS
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 14 KVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDIG--PLNKCRQLNTLHVAYNAITS 70
K++ + ++ LP+ L + R +E L L + +I + L++ +NAI
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSL 128
LP + + LVL N +SSLP I + P L L + +N+L T ++SL
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 129 RVLDLSYNHLERLNLNTLIP 148
+ L LS N L ++L +LIP
Sbjct: 168 QNLQLSSNRLTHVDL-SLIP 186
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 34/186 (18%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
N+ KL L++S N L+ + L+ L L+SN LT + L+ L +V+Y
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSY 195
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N +++L + +EEL S N I+ + + L +L+L N+LT L
Sbjct: 196 NLLSTL-----AIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTAWLLNY 247
Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQ------------------------LQYLDVSGNPR 161
L +DLSYN LE++ + + Q L+ LD+S N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
Query: 162 LHVDPN 167
LHV+ N
Sbjct: 308 LHVERN 313
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 14 KVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDIG--PLNKCRQLNTLHVAYNAITS 70
K++ + ++ LP+ L + R +E L L + +I + L++ +NAI
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSL 128
LP + + LVL N +SSLP I + P L L + +N+L T ++SL
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 129 RVLDLSYNHLERLNLNTLIP 148
+ L LS N L ++L +LIP
Sbjct: 174 QNLQLSSNRLTHVDL-SLIP 192
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 34/188 (18%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
N+ KL L++S N L+ + L+ L L+SN LT + L+ L +V+
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVS 200
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
YN +++L + +EEL S N I+ + + L +L+L N+LT L
Sbjct: 201 YNLLSTL-----AIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAWLLN 252
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQ------------------------LQYLDVSGNP 160
L +DLSYN LE++ + + Q L+ LD+S N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312
Query: 161 RLHVDPNH 168
LHV+ N
Sbjct: 313 LLHVERNQ 320
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
+ T ++ + I +L + S ++++E+L L+ N I+ + + HL L L N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 118 SCPTLYLS--SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
S + L VLDLSYNH+ L + +L + L +D N KS
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQS-------FLGLPNLKELALDTNQLKS 385
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 35 YLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92
+L KL L+ N L I +L L ++YN I +L D ++EL L N +
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 93 SSLPNTIPQSWPHLRVLRLHSNHLT-SCPTL-YLS 125
S+P+ I L+ + LH+N SCP + YLS
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
QLNT+ + N + + + ++ ++ L L+ GIS+L + +L L L SNH+
Sbjct: 81 QLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHI 140
Query: 117 TSC--PTLYLSSSLRVLDLSYN---HLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
+S P + + +L+VLD N ++ R + N+L L+ +GN ++P F S
Sbjct: 141 SSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFIS 200
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 76 ISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSY 135
I + +++LVL+ N L S+P LR LY+ ++R LDL
Sbjct: 296 IEGMNSLKKLVLNANSFDQLCQINAASFPSLR-------------DLYIKGNMRKLDLGT 342
Query: 136 NHLERLNLNTLIPKQLQYLDVS 157
LE+L + LQ LD+S
Sbjct: 343 RCLEKL-------ENLQKLDLS 357
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 24 KMLPSLNNENRYLEKLYLTSNALTD--IGPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81
K+ P + + L++LYL SN L +G + QL L + N +T LP
Sbjct: 54 KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113
Query: 82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
++EL + N ++ LP I + HL L L N L S P
Sbjct: 114 LKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIP 151
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 39 LYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
LYL N +T + P + L L++ N + +LP + +++ L L N ++ LP
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 97 NTIPQSWPHLRVLRLHSNHLTSCP 120
+ + HL+ L + N LT P
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELP 128
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT--SCPTL-- 122
+TS+P S+ + +E L N + SLP+ + L L L SN L+ C +
Sbjct: 18 GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 123 YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDV 156
+ ++SL+ LDLS+N + ++ N L +QL++LD
Sbjct: 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 39 LYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
L L +N +T+I G + L+TL + N I+ + + ++E L LS N + LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 97 NTIPQSWPHLRVLRLHSNHLT 117
+P++ L+ LR+H N +T
Sbjct: 117 EKMPKT---LQELRVHENEIT 134
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 63/230 (27%)
Query: 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---------------------- 49
KL+ L +SKN LK LP + L++L + N +T +
Sbjct: 101 KLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 50 ------GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE---------------------M 82
G ++L+ + +A IT++P + +E +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERL 141
+L LS N IS++ N + PHLR L L++N L P L ++V+ L N++ +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Query: 142 NLNTLIP-----KQLQYLDVS--GNPRLH--VDPNHFKSYRSYVRVYIQL 182
N P K+ Y VS NP + + P+ F+ YVR +QL
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV--YVRAAVQL 326
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKC-RQLNTLHVAY 65
L N+ L+ L+++ N L +P +++Y++ +YL +N ++ IG + C NT +Y
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295
Query: 66 NAITSLPDNCISAWS 80
+ + SL N + W
Sbjct: 296 SGV-SLFSNPVQYWE 309
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 39 LYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
L L +N +T+I G + L+TL + N I+ + + ++E L LS N + LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 97 NTIPQSWPHLRVLRLHSNHLT 117
+P++ L+ LR+H N +T
Sbjct: 117 EKMPKT---LQELRVHENEIT 134
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 63/230 (27%)
Query: 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---------------------- 49
KL+ L +SKN LK LP + L++L + N +T +
Sbjct: 101 KLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 50 ------GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE---------------------M 82
G ++L+ + +A IT++P + +E +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERL 141
+L LS N IS++ N + PHLR L L++N L P L ++V+ L N++ +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Query: 142 NLNTLIP-----KQLQYLDVS--GNPRLH--VDPNHFKSYRSYVRVYIQL 182
N P K+ Y VS NP + + P+ F+ YVR +QL
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV--YVRAAVQL 326
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKC-RQLNTLHVAY 65
L N+ L+ L+++ N L +P +++Y++ +YL +N ++ IG + C NT +Y
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295
Query: 66 NAITSLPDNCISAWS 80
+ + SL N + W
Sbjct: 296 SGV-SLFSNPVQYWE 309
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190
Score = 33.1 bits (74), Expect = 0.091, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAI-------------------TSLPD-NCIS 77
KL+L N LTDI PL + L L + N I + D N +
Sbjct: 69 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV 128
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 186
Query: 138 LERL 141
+ L
Sbjct: 187 ISDL 190
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 81 EMEELV-LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CPTLYLSSSLRVLDLSYNH 137
E+E +V S ++ +P +P P + L L N ++ P + S LRVL LS+N
Sbjct: 31 ELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 138 LERLNLNTLIPKQ-LQYLDVSGN 159
+ L+ + + Q L+YLDVS N
Sbjct: 88 IRSLDFHVFLFNQDLEYLDVSHN 110
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 1 MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEK---LYLTSNALTDIGPLNKC-- 55
+ L +N S L+ L++S N L + + + E L L+SN LT G + +C
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNS-HAYDRTCAWAESILVLNLSSNMLT--GSVFRCLP 449
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
++ L + N I S+P + ++ ++EL ++ N + S+P+ + L+ + LH N
Sbjct: 450 PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Query: 116 L-TSCPTL-YLS 125
+CP + YLS
Sbjct: 509 WDCTCPGIRYLS 520
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTI---PQSWPHLRVLRLHSNHL 116
L ++ N+I+ L IS SE+ L LS N I SL + Q +L V ++
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 117 TSCPTLYLSSSLRVLDLSYNHLERL 141
+ CP +SLR LDLS+N + L
Sbjct: 116 SCCPM----ASLRHLDLSFNDFDVL 136
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
+L+TL + N + + + +S ++ L GISS+ + L L L SNH+
Sbjct: 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Query: 117 TSC--PTLYLSSSLRVLDLSYN---HLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
+S P + + L+VLD N +L + ++++L L+++GN ++P F S
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 7 LQNSSKLKVLNISKN---CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L N + L+ L+IS N + +L L N LE L T+N ++DI PL L+ L +
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTN----LESLIATNNQISDITPLGILTNLDELSL 223
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPTL 122
N + + +++ + + +L L+ N IS+L P S L L+L +N +++ L
Sbjct: 224 NGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPL 278
Query: 123 YLSSSLRVLDLSYNHLERL 141
++L L+L+ N LE +
Sbjct: 279 AGLTALTNLELNENQLEDI 297
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 20 KNCLKMLPSLNNENRY-----------LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
KN K++ L N N+ L L L +N +TDI PL LN L ++ N I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSL 95
+ + + +S + +++L GN ++ L
Sbjct: 142 SDI--SALSGLTSLQQLNF-GNQVTDL 165
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 7 LQNSSKLKVLNISKN---CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L N + L+ L+IS N + +L L N LE L T+N ++DI PL L+ L +
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTN----LESLIATNNQISDITPLGILTNLDELSL 223
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPTL 122
N + + +++ + + +L L+ N IS+L P S L L+L +N +++ L
Sbjct: 224 NGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPL 278
Query: 123 YLSSSLRVLDLSYNHLERL 141
++L L+L+ N LE +
Sbjct: 279 AGLTALTNLELNENQLEDI 297
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 20 KNCLKMLPSLNNENRY-----------LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
KN K++ L N N+ L L L +N +TDI PL LN L ++ N I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSL 95
+ + + +S + +++L GN ++ L
Sbjct: 142 SDI--SALSGLTSLQQLNF-GNQVTDL 165
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 7 LQNSSKLKVLNISKN---CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L N + L+ L+IS N + +L L N LE L T+N ++DI PL L+ L +
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTN----LESLIATNNQISDITPLGILTNLDELSL 224
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPTL 122
N + + +++ + + +L L+ N IS+L P S L L+L +N +++ L
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPL 279
Query: 123 YLSSSLRVLDLSYNHLERL 141
++L L+L+ N LE +
Sbjct: 280 AGLTALTNLELNENQLEDI 298
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 20 KNCLKMLPSLNNENRY-----------LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
KN K++ L N N+ L L L +N +TDI PL LN L ++ N I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSL 95
+ + + +S + +++L S N ++ L
Sbjct: 142 SDI--SALSGLTSLQQLSFSSNQVTDL 166
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
L ++ ++N LTDI PL +L + + N I + ++ + + L L N I+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI 122
Query: 96 PNTIP-QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL----NLNTLIPKQ 150
P ++ +L L L SN ++ L +SL+ L S N + L NL T
Sbjct: 123 D---PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT----- 174
Query: 151 LQYLDVSGN 159
L+ LD+S N
Sbjct: 175 LERLDISSN 183
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 7 LQNSSKLKVLNISKN---CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L N + L+ L+IS N + +L L N LE L T+N ++DI PL L+ L +
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTN----LESLIATNNQISDITPLGILTNLDELSL 228
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPTL 122
N + + +++ + + +L L+ N IS+L P S L L+L +N +++ L
Sbjct: 229 NGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPL 283
Query: 123 YLSSSLRVLDLSYNHLERL 141
++L L+L+ N LE +
Sbjct: 284 AGLTALTNLELNENQLEDI 302
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 20 KNCLKMLPSLNNENRY-----------LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
KN K++ L N N+ L L L +N +TDI PL LN L ++ N I
Sbjct: 87 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 146
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSL 95
+ + + +S + +++L GN ++ L
Sbjct: 147 SDI--SALSGLTSLQQLSF-GNQVTDL 170
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 33/120 (27%)
Query: 65 YNAITSLPDNCISAWSEMEELVLSGN-------------------------GISSLPNTI 99
YN I+ + SAW + E+ L G +SSLP+ +
Sbjct: 19 YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL 78
Query: 100 PQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
P P + VL + N L S P L +SL LD N L L +P L++LDV N
Sbjct: 79 P---PQITVLEITQNALISLPE--LPASLEYLDACDNRLSTL---PELPASLKHLDVDNN 130
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 15/130 (11%)
Query: 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSL 71
++ VL I++N L LP L YL+ N L+ + L L L V N +T L
Sbjct: 81 QITVLEITQNALISLPELPASLEYLDA---CDNRLSTLPELPAS--LKHLDVDNNQLTXL 135
Query: 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVL 131
P+ + A +E + N ++ LP +P S L VL + +N LT P L SL L
Sbjct: 136 PE--LPAL--LEYINADNNQLTXLPE-LPTS---LEVLSVRNNQLTFLPE--LPESLEAL 185
Query: 132 DLSYNHLERL 141
D+S N LE L
Sbjct: 186 DVSTNLLESL 195
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 29/127 (22%)
Query: 51 PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR 110
P N Q+ L + NA+ SLP+ S +E L N +S+LP +P S HL V
Sbjct: 75 PDNLPPQITVLEITQNALISLPELPAS----LEYLDACDNRLSTLPE-LPASLKHLDV-- 127
Query: 111 LHSNHLTSCPTL------------------YLSSSLRVLDLSYNHLERLNLNTLIPKQLQ 152
+N LT P L L +SL VL + N L L +P+ L+
Sbjct: 128 -DNNQLTXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFL---PELPESLE 183
Query: 153 YLDVSGN 159
LDVS N
Sbjct: 184 ALDVSTN 190
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 7 LQNSSKLKVLNISKN---CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L N + L+ L+IS N + +L L N LE L T+N ++DI PL L+ L +
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTN----LESLIATNNQISDITPLGILTNLDELSL 224
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPTL 122
N + + +++ + + +L L+ N IS+L P S L L+L +N +++ L
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPL 279
Query: 123 YLSSSLRVLDLSYNHLERL 141
++L L+L+ N LE +
Sbjct: 280 AGLTALTNLELNENQLEDI 298
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 20 KNCLKMLPSLNNENRY-----------LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
KN K++ L N N+ L L L +N +TDI PL LN L ++ N I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSL 95
+ + + +S + +++L S N ++ L
Sbjct: 142 SDI--SALSGLTSLQQLNFSSNQVTDL 166
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
L ++ ++N LTDI PL +L + + N I + ++ + + L L N I+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI 122
Query: 96 PNTIP-QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL----NLNTLIPKQ 150
P ++ +L L L SN ++ L +SL+ L+ S N + L NL T
Sbjct: 123 D---PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT----- 174
Query: 151 LQYLDVSGN 159
L+ LD+S N
Sbjct: 175 LERLDISSN 183
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 7 LQNSSKLKVLNISKN---CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L N + L+ L+IS N + +L L N LE L T+N ++DI PL L+ L +
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTN----LESLIATNNQISDITPLGILTNLDELSL 224
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPTL 122
N + + +++ + + +L L+ N IS+L P S L L+L +N +++ L
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPL 279
Query: 123 YLSSSLRVLDLSYNHLERL 141
++L L+L+ N LE +
Sbjct: 280 AGLTALTNLELNENQLEDI 298
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 20 KNCLKMLPSLNNENRY-----------LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
KN K++ L N N+ L L L +N +TDI PL LN L ++ N I
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 141
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSL 95
+ + + +S + +++L S N ++ L
Sbjct: 142 SDI--SALSGLTSLQQLSFSSNQVTDL 166
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
L ++ ++N LTDI PL +L + + N I + ++ + + L L N I+ +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI 122
Query: 96 PNTIP-QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL----NLNTLIPKQ 150
P ++ +L L L SN ++ L +SL+ L S N + L NL T
Sbjct: 123 D---PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT----- 174
Query: 151 LQYLDVSGN 159
L+ LD+S N
Sbjct: 175 LERLDISSN 183
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 7 LQNSSKLKVLNISKN---CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L N + L+ L+IS N + +L L N LE L T+N ++DI PL L+ L +
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTN----LESLIATNNQISDITPLGILTNLDELSL 227
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPTL 122
N + + +++ + + +L L+ N IS+L P S L L+L +N +++ L
Sbjct: 228 NGNQLKDI--GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPL 282
Query: 123 YLSSSLRVLDLSYNHLERL 141
++L L+L+ N LE +
Sbjct: 283 AGLTALTNLELNENQLEDI 301
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 20 KNCLKMLPSLNNENRY-----------LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
KN K++ L N N+ L L L +N +TDI PL LN L ++ N I
Sbjct: 86 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 145
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSL 95
+ + + +S + +++L GN ++ L
Sbjct: 146 SDI--SALSGLTSLQQLSF-GNQVTDL 169
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
C + + ++ S+P A ++ L LS N I+ + N+ Q +L+ L L SN
Sbjct: 30 CDRNGICKGSSGSLNSIPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86
Query: 115 HLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+ + SS SL LDLSYN+L L+ + P L +L++ GNP
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
L L +A N I + DN + ++EL L N + S+P+ I L+ + LH+N
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 359
Query: 117 T-SCPTL-YLS 125
SCP + YLS
Sbjct: 360 DCSCPRIDYLS 370
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
+ T ++ + I +L + S ++++E+L L+ N I+ + + HL+ L L +N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 118 SCP 120
S P
Sbjct: 337 SVP 339
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
C + + ++ S+P A ++ L LS N I+ + N+ Q +L+ L L SN
Sbjct: 4 CDRNGICKGSSGSLNSIPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 60
Query: 115 HLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+ + SS SL LDLSYN+L L+ + P L +L++ GNP
Sbjct: 61 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 109
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 75 CISAWSEMEELVLSGNGISSLPNTIPQ--SWPHLRVLRLHSNHLTSCP-TLYLSSSLRVL 131
C AW ++ L+L N ++SL T + +L + + N S P T ++ L
Sbjct: 356 CEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYL 415
Query: 132 DLSYNHLERLNLNTLIPKQLQYLDV 156
+LS + ++ IPK L+ LDV
Sbjct: 416 NLSSTRIH--SVTGCIPKTLEILDV 438
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 131 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 188
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N I + D N +
Sbjct: 67 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV 126
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 127 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 184
Query: 138 LERL 141
+ L
Sbjct: 185 ISDL 188
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSL-PDNCISAWSEMEELVLSGNGISS 94
LE LYL +N +TDI L++ +L+TL + N I+ + P C+ ++++ L LS N IS
Sbjct: 131 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACL---TKLQNLYLSKNHISD 187
Query: 95 L 95
L
Sbjct: 188 L 188
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N + + D N +
Sbjct: 67 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 126
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 127 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLYLSKNH 184
Query: 138 LERL 141
+ L
Sbjct: 185 ISDL 188
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 156 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 213
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N + + D N +
Sbjct: 92 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 151
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 152 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 209
Query: 138 LERL 141
+ L
Sbjct: 210 ISDL 213
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 134 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 191
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N + + D N +
Sbjct: 70 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 129
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 130 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 187
Query: 138 LERL 141
+ L
Sbjct: 188 ISDL 191
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 43 SNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS 102
S + T I P + +L +++N IT + + A + ++ L+L + I+++ S
Sbjct: 14 SRSFTSI-PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 103 WPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP 148
L L L NHL+S + + SSL+ L+L N + L + +L P
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 75 CISAWSEMEELVLSGNGISSLPNT--IPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVL 131
C AW ++ LVLS N + S+ T I + +L L + N P + +R L
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415
Query: 132 DLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+LS + + T IP+ L+ LDVS N
Sbjct: 416 NLSSTGIRV--VKTCIPQTLEVLDVSNN 441
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 193
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N + + D N +
Sbjct: 72 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189
Query: 138 LERL 141
+ L
Sbjct: 190 ISDL 193
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 211
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N I + D N +
Sbjct: 90 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV 149
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 150 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 207
Query: 138 LERL 141
+ L
Sbjct: 208 ISDL 211
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 211
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N I + D N +
Sbjct: 90 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV 149
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 150 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 207
Query: 138 LERL 141
+ L
Sbjct: 208 ISDL 211
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 43 SNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS 102
S + T I P + +L +++N IT + + A + ++ L+L + I+++ S
Sbjct: 40 SRSFTSI-PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 98
Query: 103 WPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP 148
L L L NHL+S + + SSL+ L+L N + L + +L P
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 146
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 75 CISAWSEMEELVLSGNGISSLPNT--IPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVL 131
C AW ++ LVLS N + S+ T I + +L L + N P + +R L
Sbjct: 382 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 441
Query: 132 DLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+LS + + T IP+ L+ LDVS N
Sbjct: 442 NLSSTGIRV--VKTCIPQTLEVLDVSNN 467
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 154 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 211
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT-------------------SLPD-NCIS 77
KL+L N LTDI PL + L L + N I + D N +
Sbjct: 90 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV 149
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
++E L L N I+ + T+ L L L N ++ L + L+ L LS NH
Sbjct: 150 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 207
Query: 138 LERL 141
+ L
Sbjct: 208 ISDL 211
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAIT 69
S L++ NIS N K +L +LYL N+LT++ + L L +++N +T
Sbjct: 232 SNLQIFNISANIFKY--------DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283
Query: 70 SLPDNCISAWSEMEELVLSGNGISSLP 96
SLP S + +++ N +++LP
Sbjct: 284 SLPAELGSCF-QLKYFYFFDNMVTTLP 309
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 76 ISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSY 135
I + + L L+GN ++ LP I ++ +LRVL L N LTS P S L Y
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGS----CFQLKY 297
Query: 136 NHLERLNLNTLIPKQ------LQYLDVSGNP 160
+ N+ T +P + LQ+L V GNP
Sbjct: 298 FYFFD-NMVTTLPWEFGNLCNLQFLGVEGNP 327
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 15 VLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPD 73
V+ S LK+LP R + +LYL N T + L+ + L + ++ N I++L +
Sbjct: 14 VVRCSNKGLKVLP--KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN 71
Query: 74 NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
S +++ L+LS N + +P LR+L LH N ++ P
Sbjct: 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I+ + ++ ++++ L LS N IS L
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL 193
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 33/160 (20%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
+++ + N+S +K S ++ LP++ KL+L N LTDI PL + L L
Sbjct: 47 SIDQIIANNSDIK----SVQGIQYLPNVT-------KLFLNGNKLTDIKPLANLKNLGWL 95
Query: 62 HVAYNAIT-------------------SLPD-NCISAWSEMEELVLSGNGISSLPNTIPQ 101
+ N + + D N + ++E L L N I+ + T+
Sbjct: 96 FLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLS 153
Query: 102 SWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL 141
L L L N ++ L + L+ L LS NH+ L
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 193
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.9 bits (76), Expect = 0.056, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTS------NALTDIGPLNKC 55
ELF S L +N+ N L +P SL +EN + YL + N LT + +
Sbjct: 451 ELF-STGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509
Query: 56 RQLNTL---HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH 112
L L ++YN+ + P +++ + L G GI + + R LR
Sbjct: 510 TTLPYLVGIDLSYNSFSKFPTQPLNSST------LKGFGIRNQRDAQGN-----RTLREW 558
Query: 113 SNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSY 172
+T CP SL L + N + ++N I + LD+ NP + +D
Sbjct: 559 PEGITLCP------SLTQLQIGSNDIRKVNEK--ITPNISVLDIKDNPNISID------- 603
Query: 173 RSYVRVYIQ 181
SYV YI+
Sbjct: 604 LSYVCPYIE 612
Score = 32.3 bits (72), Expect = 0.17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 12 KLKVLNISKNCLKMLP---SLNNENRY--LEKLYLTSNALTDIGP-LNKCRQLNTLHVAY 65
K++++ I N LK P SL + LE LY N L P +L +L++AY
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLY---NQLEGKLPAFGSEIKLASLNLAY 362
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPN 97
N IT +P N ++E L + N + +PN
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 36 LEKLYLT----SNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91
L LY+T S A+ D L++ + L TL +YNA++ IS+ + + GN
Sbjct: 103 LHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 92 ISSLPNTIPQSWPHLRVL----RLHSNHLTS-CPTLYLSSSLRVLDLSYNHLE 139
IS IP S+ L + N LT P + + +L +DLS N LE
Sbjct: 161 ISG---AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN 97
KL+L N LTDI PL + L L + N + L + + +++ L L NGIS +
Sbjct: 70 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDING 127
Query: 98 TIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL 141
+ P L L L +N +T L + L L L N + R+
Sbjct: 128 LV--HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI 169
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE LYL +N +TDI L++ +L+TL + N I + ++ ++++ L LS N IS L
Sbjct: 134 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIV--PLARLTKLQNLYLSKNHISDL 191
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCP 120
+ +L VL L S + P
Sbjct: 192 --RALRGLKNLDVLELFSQEALNKP 214
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 31 NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90
+EN LE+L+L N L +A+ T L + S ++ L L+ N
Sbjct: 448 SENPSLEQLFLGEN---------------MLQLAWE--TELCWDVFEGLSHLQVLYLNHN 490
Query: 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQ 150
++SLP + LR L L+SN LT L ++L +LD+S N L N + +
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFV--S 548
Query: 151 LQYLDVSGN 159
L LD++ N
Sbjct: 549 LSVLDITHN 557
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+ + VLN++ N L+ LP+ N RY L L + N ++ + P K L L++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
++ L D + + + EL L N I + N +L L L N L+S
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 23 LKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82
L+ L L+ ++ L +L+ +N I L L+ L++ N +P E+
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLR---VLDLSYN 136
+ + L N +++LP ++ + L+ L L N +TS + R LD+ +N
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 11 SKLKVLNISKNCL-KMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNA 67
S+L L++ N + K+ P L + L+ L L N L+ + C L LH+ N+
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT----LY 123
I + +N + L LS NG+SS +L+ L L +N + + + ++
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168
Query: 124 LSSSLRVLDLSYNHLERL 141
+SSL+ L+LS N ++
Sbjct: 169 ANSSLKKLELSSNQIKEF 186
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+ + VLN++ N L+ LP+ N RY L L + N ++ + P K L L++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
++ L D + + + EL L N I + N +L L L N L+S
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 50 GPLNKCRQLNTLHV---AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHL 106
GP+ + L+ LH+ N +P E++ + L N +++LP ++ + L
Sbjct: 532 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 591
Query: 107 RVLRLHSNHLTSCPTLYLSSSLR---VLDLSYN 136
+ L L N +TS + R LD+ +N
Sbjct: 592 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 11 SKLKVLNISKNCL-KMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNA 67
S+L L++ N + K+ P L + L+ L L N L+ + C L LH+ N+
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT----LY 123
I + +N + L LS NG+SS +L+ L L +N + + + ++
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 173
Query: 124 LSSSLRVLDLSYNHLERL 141
+SSL+ L+LS N ++
Sbjct: 174 ANSSLKKLELSSNQIKEF 191
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 66 NAITSLPDNCISAWS----EMEELVLSGNGISSLPNTIPQSWP-HLRVLRLHSNHLTSCP 120
NA P SA + +++ L LS N + WP L L L L P
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269
Query: 121 TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
L + L VLDLSYN L+R +P Q+ L + GNP L
Sbjct: 270 K-GLPAKLSVLDLSYNRLDRNPSPDELP-QVGNLSLKGNPFLD 310
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
LE L L N +TDI PL+ +L L++ N IT + + + + + EL L+ + IS +
Sbjct: 68 LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI 125
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
L L + +N +TD+ PL QL L + N I+ + N + ++++ L + N IS +
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDI 280
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERL 141
++ + L L L++N L + + ++L L LS NH+ +
Sbjct: 281 --SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 40 YLTS--NALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN 97
Y T+ N +TDI P+ +LN+L + N IT L + ++ S++ L + N IS + N
Sbjct: 203 YFTAYVNQITDITPVANXTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDI-N 259
Query: 98 TIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHL 138
+ + L+ L + SN ++ L S L L L+ N L
Sbjct: 260 AV-KDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQL 299
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L N S+L L I N + + ++ + + L+ L + SN ++DI LN QLN+L + N
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLTK-LKXLNVGSNQISDISVLNNLSQLNSLFLNNN 297
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSL 95
+ + I + + L LS N I+ +
Sbjct: 298 QLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+ + VLN++ N L+ LP+ N RY L L + N ++ + P K L L++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
++ L D + + + EL L N I + N +L L L N L+S
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 50 GPLNKCRQLNTLHV---AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHL 106
GP+ + L+ LH+ N +P E++ + L N +++LP ++ + L
Sbjct: 537 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 596
Query: 107 RVLRLHSNHLTSCPTLYLSSSLR---VLDLSYN 136
+ L L N +TS + R LD+ +N
Sbjct: 597 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 11 SKLKVLNISKNCL-KMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNA 67
S+L L++ N + K+ P L + L+ L L N L+ + C L LH+ N+
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT----LY 123
I + +N + L LS NG+SS +L+ L L +N + + + ++
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 178
Query: 124 LSSSLRVLDLSYNHLERL 141
+SSL+ L+LS N ++
Sbjct: 179 ANSSLKKLELSSNQIKEF 196
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 34 RYLEKLYLTSNALTDIGPLNKCR--QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91
+ L L ++SN LTD + +C ++ L + N I S+P + ++EL ++ N
Sbjct: 399 KSLLSLNMSSNILTD--TIFRCLPPRIKVLDLHSNKIKSIPKQVVKL-EALQELNVASNQ 455
Query: 92 ISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTL-YLS 125
+ S+P+ I L+ + LH+N SCP + YLS
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 491
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL- 146
S NG+ +P + Q L + + + + L + L LS LR+L +S+N ++ L+++
Sbjct: 8 SKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSK-LRILIISHNRIQYLDISVFK 66
Query: 147 IPKQLQYLDVSGNPRLHV 164
++L+YLD+S N + +
Sbjct: 67 FNQELEYLDLSHNKLVKI 84
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
FL + SK ++++ K+ + LN Y+ +L+ + DI L+K R L +++
Sbjct: 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTS-----DILSLSKLR---ILIISH 54
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N I L + E+E L LS N + + + HL + + L C
Sbjct: 55 NRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNM 114
Query: 126 SSLRVLDLSYNHLER 140
S L+ L LS HLE+
Sbjct: 115 SQLKFLGLSTTHLEK 129
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L+N +K+ L +S N LK + ++ + ++ L LTS +TD+ PL L L++ N
Sbjct: 87 LKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 145
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
IT++ + ++ + ++ L + N ++ L T + L LR N ++
Sbjct: 146 QITNI--SPLAGLTNLQYLSIGNNQVNDL--TPLANLSKLTTLRADDNKISDI 194
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + L N ++ + LNN L L L N +TD+ PL ++ L ++ N
Sbjct: 46 LDGIATLSAFNTGVTTIEGIQYLNN----LIGLELKDNQITDLTPLKNLTKITELELSGN 101
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+ ++ + I+ ++ L L+ I+ + T +L+VL L N +T+ L +
Sbjct: 102 PLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLT 157
Query: 127 SLRVLDLSYNHLERL 141
+L+ L + N + L
Sbjct: 158 NLQYLSIGNNQVNDL 172
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSL-NNENRYLEK-LYLTSNALTDIGPLNKC-----R 56
E F + +++ L S N LK +P++ N ++ Y+ + + N + G C +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYK 671
Query: 57 QLN--TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNT--IPQSWPH-----LR 107
+N T+ ++YN I P + S + ++LS N +S+P P+ + L
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGNYKNTYLLT 731
Query: 108 VLRLHSNHLTSCPTLYLSSSLRVL---DLSYNHLERLNLNTLIPKQLQYLDV 156
+ L N LTS + +++L L D+SYN L QL+ +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSFPTQPLNSSQLKAFGI 783
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 24/123 (19%)
Query: 58 LNTLHVAYNAITSLPDNC-ISAWSEMEELVLSGNGISSLPNTIPQSWPHL---------- 106
L T+ + +N +TSL D+ + + +S N SS P T P + L
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSFP-TQPLNSSQLKAFGIRHQRD 788
Query: 107 ----RVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
R+LR +T+CP SL L + N + +++ L P QL LD++ NP +
Sbjct: 789 AEGNRILRQWPTGITTCP------SLIQLQIGSNDIRKVD-EKLTP-QLYILDIADNPNI 840
Query: 163 HVD 165
+D
Sbjct: 841 SID 843
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L+N +K+ L +S N LK + ++ + ++ L LTS +TD+ PL L L++ N
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 67 AITSL 71
IT++
Sbjct: 140 QITNI 144
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
QL+TL + N + + + ++ ++ L L GIS+L + +L L L SNH
Sbjct: 78 HQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNH 137
Query: 116 LTSC--PTLYLSSSLRVLDLSYN 136
++S P + + +L+VLD N
Sbjct: 138 ISSIKFPKDFPARNLKVLDFQNN 160
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 36 LEKLYLTSNALTDIGPLN-KC-RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
+E L L + +DI +C QL L + + LP + + +++LVLS N
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSG-MKGLNLLKKLVLSVNHFD 311
Query: 94 SLPNTIPQSWPHLRVLRLHSN----HLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK 149
L ++P L L + N HL L +L+ LDLS+N +E + +L K
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHL-GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLK 370
Query: 150 ---QLQYLDVSGNPRLHVDPNHFK 170
LQ L++S N L + FK
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFK 394
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L+ L + N I S S + +E LV ++SL + L+ L + N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 118 SCPT-LYLS--SSLRVLDLSYNHLERLNLNTLI-----PKQLQYLDVSGNPRLHVDPNHF 169
SC Y S ++L +DLSYN+++ + +N L P+ LD+S NP + F
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201
Query: 170 KSYR 173
+ +
Sbjct: 202 QGIK 205
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L+ L + N I S S + +E LV ++SL + L+ L + N +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 118 SCPT-LYLS--SSLRVLDLSYNHLERLNLNTLI-----PKQLQYLDVSGNPRLHVDPNHF 169
SC Y S ++L +DLSYN+++ + +N L P+ LD+S NP + F
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 196
Query: 170 KSYR 173
+ +
Sbjct: 197 QGIK 200
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS 70
L+V+ S LK +P + + L L L +N ++++ + L L + N I+
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SL 128
+ + S ++++L +S N + +P +P S LR+ H N + P S ++
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIRKVPKGVFSGLRNM 149
Query: 129 RVLDLSYNHLE 139
+++ N LE
Sbjct: 150 NCIEMGGNPLE 160
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 13 LKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLH-----VAY 65
LK LN++ N ++ LP + LE L L+SN + I C L LH
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLS 181
Query: 66 NAITSLPDNCI--SAWSE--MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCP 120
++ P N I A+ E ++EL L N + S+P+ I L+ + LH+N SCP
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Query: 121 TL-YLS 125
+ YLS
Sbjct: 242 RIDYLS 247
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 13 LKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLH-----VAY 65
LK LN++ N ++ LP + LE L L+SN + I C L LH
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLS 183
Query: 66 NAITSLPDNCI--SAWSE--MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCP 120
++ P N I A+ E ++EL L N + S+P+ I L+ + LH+N SCP
Sbjct: 184 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 121 TL-YLS 125
+ YLS
Sbjct: 244 RIDYLS 249
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 13 LKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLH-----VAY 65
LK LN++ N ++ LP + LE L L+SN + I C L LH
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLS 182
Query: 66 NAITSLPDNCI--SAWSE--MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCP 120
++ P N I A+ E ++EL L N + S+P+ I L+ + LH+N SCP
Sbjct: 183 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 121 TL-YLS 125
+ YLS
Sbjct: 243 RIDYLS 248
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 13 LKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLH-----VAY 65
LK LN++ N ++ LP + LE L L+SN + I C L LH
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLS 182
Query: 66 NAITSLPDNCI--SAWSE--MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCP 120
++ P N I A+ E ++EL L N + S+P+ I L+ + LH+N SCP
Sbjct: 183 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 121 TL-YLS 125
+ YLS
Sbjct: 243 RIDYLS 248
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 13 LKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLH-----VAY 65
LK LN++ N ++ LP + LE L L+SN + I C L LH
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLS 183
Query: 66 NAITSLPDNCI--SAWSE--MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL-TSCP 120
++ P N I A+ E ++EL L N + S+P+ I L+ + LH+N SCP
Sbjct: 184 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 121 TL-YLS 125
+ YLS
Sbjct: 244 RIDYLS 249
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL- 116
L ++ N + +P ++++L L+ N + S+P+ I L+ + LH+N
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 231
Query: 117 TSCPTL-YLS 125
SCP + YLS
Sbjct: 232 CSCPRIDYLS 241
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 121 TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
+ + L L+LS+N LE L+ T+ LQ L +SGNP
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNN-ENRYLEKLYLTSNALTD 48
+Q + LK+LN+S N LK L+ + LE+L+L N+L+D
Sbjct: 191 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 234
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLT--SC--PTLYLSSSLRVLDLSYNHLERLNL 143
GN S + P L L L N L+ C + + ++SL+ LDLS+N + ++
Sbjct: 337 GGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Query: 144 NTLIPKQLQYLDV 156
N L +QL++LD
Sbjct: 391 NFLGLEQLEHLDF 403
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 50 GPLNKCRQLNTLHVAYNAITS--LPDNCISAWSEMEELV---LSGNGISSLPNTIPQSWP 104
G N L L +A N+ LPD ++E+ L LS + L T S
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 105 HLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTL--IPKQLQYLDVSGN 159
L+VL + N+ S T +SL+VLD S NH+ L P L +L+++ N
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 104 PHLRVLRLHSNHLT--SC--PTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDV 156
P L L L N L+ C + + ++SL+ LDLS+N + ++ N L +QL++LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 26/119 (21%)
Query: 11 SKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
S L+VL ++ N + LP + E R L L L+ L + P A+N++
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----------TAFNSL 493
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTL-YLS 125
+SL + L ++ N + S+P+ I L+ + LH+N SCP + YLS
Sbjct: 494 SSL-----------QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
G + ++L + ++ N I+ L + + LVL GN I+ LP ++ + L++L
Sbjct: 50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 110 RLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
L++N + +L +L L N L+ + T P + +Q + ++ NP
Sbjct: 110 LLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
G + ++L + ++ N I+ L + + LVL GN I+ LP ++ + L++L
Sbjct: 50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 110 RLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
L++N + +L +L L N L+ + T P + +Q + ++ NP
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNN-ENRYLEKLYLTSNALTD 48
+Q + LK+LN+S N LK L+ + LE+L+L N+L D
Sbjct: 185 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 228
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNN-ENRYLEKLYLTSNALTD 48
+Q + LK+LN+S N LK L+ + LE+L+L N+L D
Sbjct: 191 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNN-ENRYLEKLYLTSNALTD 48
+Q + LK+LN+S N LK L+ + LE+L+L N+L D
Sbjct: 191 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNN-ENRYLEKLYLTSNALTD 48
+Q + LK+LN+S N LK L+ + LE+L+L N+L D
Sbjct: 185 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 228
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 50 GPLNKCRQLNTLHVAYNAITS--LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR 107
G N L L +A N+ LPD + + L LS + L T S L+
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 108 VLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTL--IPKQLQYLDVSGN 159
VL + N+ S T +SL+VLD S NH+ L P L +L+++ N
Sbjct: 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLT--SC--PTLYLSSSLRVLDLSYNHLERLNL 143
GN S + P L L L N L+ C + + + SL+ LDLS+N + ++
Sbjct: 361 GGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS 414
Query: 144 NTLIPKQLQYLDV 156
N L +QL++LD
Sbjct: 415 NFLGLEQLEHLDF 427
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
+ ELVL+GN +++LP + + P LR L +N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNH 137
++ + L L+ N I+ L + +L+ L +SN LT+ PT + L LDL+ NH
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 138 LERL 141
L+ +
Sbjct: 93 LKSI 96
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 19 SKNCLKMLPSLNNENRYLEKLYLTSN-ALTDIGPLNKCRQLNTLHVAYNAITSLP 72
+KN + L N NRYL LY +N A + K QL L Y T P
Sbjct: 60 AKNAVDHLSGFNVSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPP 114
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
L + LRVLDLS N L R +P ++ L + GNP L
Sbjct: 270 LPAKLRVLDLSSNRLNRAPQPDELP-EVDNLTLDGNPFL 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,419,799
Number of Sequences: 62578
Number of extensions: 208891
Number of successful extensions: 1037
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 272
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)