Query psy13911
Match_columns 183
No_of_seqs 159 out of 2132
Neff 11.3
Searched_HMMs 46136
Date Fri Aug 16 23:38:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 99.8 4.6E-21 9.9E-26 141.8 4.0 173 9-181 147-325 (873)
2 KOG4194|consensus 99.8 4.4E-22 9.5E-27 147.2 -2.0 140 7-146 193-337 (873)
3 PLN00113 leucine-rich repeat r 99.8 9.7E-19 2.1E-23 142.4 12.2 176 4-180 86-267 (968)
4 PLN00113 leucine-rich repeat r 99.8 6E-19 1.3E-23 143.6 10.8 177 4-180 157-339 (968)
5 KOG0617|consensus 99.7 1.9E-20 4E-25 119.3 -4.9 157 9-167 31-191 (264)
6 KOG0618|consensus 99.7 1.1E-18 2.4E-23 134.8 -3.4 179 3-182 302-509 (1081)
7 KOG0444|consensus 99.7 1.6E-18 3.5E-23 130.0 -4.2 74 106-180 224-298 (1255)
8 KOG0444|consensus 99.6 5.5E-18 1.2E-22 127.2 -4.2 175 4-180 25-204 (1255)
9 KOG0472|consensus 99.6 8.6E-19 1.9E-23 124.8 -9.3 172 4-179 107-303 (565)
10 KOG0472|consensus 99.6 5E-18 1.1E-22 120.9 -7.9 157 5-164 154-312 (565)
11 KOG0617|consensus 99.6 2.2E-17 4.8E-22 105.4 -4.6 142 3-145 48-192 (264)
12 KOG4237|consensus 99.6 1E-16 2.2E-21 113.9 -3.1 79 102-180 272-353 (498)
13 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.3E-18 108.7 9.4 152 12-180 283-452 (788)
14 KOG4237|consensus 99.5 3.2E-16 7E-21 111.4 -5.0 167 14-180 70-329 (498)
15 PLN03210 Resistant to P. syrin 99.5 7.8E-13 1.7E-17 109.4 12.6 165 11-180 611-809 (1153)
16 PF14580 LRR_9: Leucine-rich r 99.5 3.8E-14 8.2E-19 92.6 3.6 104 35-140 20-127 (175)
17 PRK15370 E3 ubiquitin-protein 99.4 6.8E-13 1.5E-17 104.4 9.6 155 12-180 200-374 (754)
18 PRK15370 E3 ubiquitin-protein 99.4 5.7E-13 1.2E-17 104.9 8.9 147 11-167 220-385 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 1.3E-12 2.7E-17 102.8 10.7 35 12-49 223-257 (788)
20 KOG0618|consensus 99.4 9.4E-16 2E-20 118.9 -7.5 177 3-181 256-460 (1081)
21 PF14580 LRR_9: Leucine-rich r 99.4 6.5E-14 1.4E-18 91.5 1.2 125 9-133 17-147 (175)
22 cd00116 LRR_RI Leucine-rich re 99.4 3.1E-14 6.8E-19 102.7 -0.5 178 3-181 73-286 (319)
23 PLN03210 Resistant to P. syrin 99.4 2E-11 4.3E-16 101.3 13.2 146 13-165 591-741 (1153)
24 COG4886 Leucine-rich repeat (L 99.3 9.8E-13 2.1E-17 97.7 4.9 171 7-181 112-285 (394)
25 cd00116 LRR_RI Leucine-rich re 99.3 1E-13 2.2E-18 100.1 -2.3 178 3-181 43-258 (319)
26 KOG1909|consensus 99.3 8.7E-14 1.9E-18 97.6 -4.9 180 2-181 83-306 (382)
27 KOG3207|consensus 99.2 2.4E-12 5.1E-17 93.1 0.3 175 5-179 140-332 (505)
28 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.4E-16 92.1 3.2 161 4-167 132-295 (394)
29 KOG0532|consensus 99.2 8.1E-13 1.8E-17 98.4 -3.8 145 16-163 80-248 (722)
30 KOG1259|consensus 99.1 3.4E-12 7.4E-17 88.7 -1.4 127 12-141 285-414 (490)
31 PF13855 LRR_8: Leucine rich r 99.1 9.3E-11 2E-15 63.7 4.2 59 57-115 2-60 (61)
32 KOG0532|consensus 99.1 8E-13 1.7E-17 98.4 -5.7 153 3-159 113-270 (722)
33 KOG1259|consensus 99.1 1E-11 2.2E-16 86.4 -1.7 129 33-164 283-414 (490)
34 KOG0531|consensus 99.0 2.2E-11 4.9E-16 90.9 -0.7 156 7-164 91-247 (414)
35 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.6E-15 61.7 3.5 56 36-91 3-60 (61)
36 KOG3207|consensus 98.9 3.4E-10 7.3E-15 82.2 1.9 162 3-164 164-341 (505)
37 KOG0531|consensus 98.9 1.1E-10 2.5E-15 87.2 -2.5 152 9-165 70-224 (414)
38 PLN03150 hypothetical protein; 98.9 1.1E-08 2.3E-13 80.2 8.0 82 36-118 420-504 (623)
39 KOG1909|consensus 98.8 2.4E-10 5.3E-15 80.6 -2.7 160 2-161 111-310 (382)
40 PF13306 LRR_5: Leucine rich r 98.7 9.7E-08 2.1E-12 59.8 8.0 122 50-176 6-129 (129)
41 COG5238 RNA1 Ran GTPase-activa 98.7 2.8E-09 6E-14 73.4 0.6 159 3-162 84-285 (388)
42 KOG1859|consensus 98.7 6.7E-11 1.5E-15 90.9 -8.1 126 35-163 165-293 (1096)
43 KOG1644|consensus 98.7 6E-08 1.3E-12 64.0 6.5 123 14-136 22-150 (233)
44 PLN03150 hypothetical protein; 98.7 6.6E-08 1.4E-12 75.9 7.5 106 58-164 420-530 (623)
45 KOG4579|consensus 98.7 2.2E-10 4.8E-15 70.9 -5.2 137 35-172 28-169 (177)
46 KOG1859|consensus 98.6 2.6E-10 5.7E-15 87.7 -8.1 123 13-138 166-291 (1096)
47 PF13306 LRR_5: Leucine rich r 98.5 8.2E-07 1.8E-11 55.6 7.0 103 6-113 7-112 (129)
48 PF12799 LRR_4: Leucine Rich r 98.5 1.7E-07 3.6E-12 47.0 3.0 38 12-49 2-39 (44)
49 KOG1644|consensus 98.5 5.4E-07 1.2E-11 59.6 5.6 120 37-158 22-149 (233)
50 KOG2120|consensus 98.4 4.8E-09 1E-13 73.1 -5.0 153 4-159 203-373 (419)
51 PF12799 LRR_4: Leucine Rich r 98.4 3.1E-07 6.7E-12 46.1 2.8 37 105-141 2-39 (44)
52 KOG2982|consensus 98.4 3.6E-08 7.8E-13 68.9 -1.0 62 8-69 68-134 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.3 3.4E-07 7.3E-12 63.4 1.3 174 5-179 24-248 (388)
54 KOG2982|consensus 98.2 1.2E-06 2.7E-11 61.4 2.8 160 3-163 89-263 (418)
55 KOG2120|consensus 98.1 2.2E-08 4.8E-13 69.9 -6.6 168 12-181 186-371 (419)
56 KOG4658|consensus 98.1 1.9E-06 4.1E-11 69.9 3.0 125 34-159 523-652 (889)
57 KOG4658|consensus 98.1 1.9E-06 4.1E-11 69.9 2.6 84 6-89 566-651 (889)
58 KOG3665|consensus 98.1 1.6E-06 3.5E-11 68.6 2.1 127 11-140 122-264 (699)
59 KOG4579|consensus 98.0 1.3E-07 2.7E-12 58.9 -4.8 110 58-167 29-141 (177)
60 PRK15386 type III secretion pr 97.8 0.00035 7.5E-09 52.0 9.4 136 7-160 48-188 (426)
61 PRK15386 type III secretion pr 97.8 0.00045 9.7E-09 51.5 9.8 110 12-136 73-187 (426)
62 KOG3665|consensus 97.8 2.6E-05 5.7E-10 61.9 3.6 114 5-118 142-264 (699)
63 KOG2123|consensus 97.7 3.2E-07 7E-12 63.7 -6.4 82 81-164 20-103 (388)
64 KOG2123|consensus 97.6 5.1E-07 1.1E-11 62.7 -6.4 82 33-116 18-100 (388)
65 KOG2739|consensus 97.6 4.1E-05 9E-10 52.7 1.9 106 26-132 35-149 (260)
66 KOG2739|consensus 96.8 0.00075 1.6E-08 46.7 1.6 99 79-179 42-149 (260)
67 PF00560 LRR_1: Leucine Rich R 96.7 0.0013 2.7E-08 27.5 1.4 20 151-171 2-21 (22)
68 PF13504 LRR_7: Leucine rich r 95.7 0.0089 1.9E-07 23.2 1.5 15 12-26 2-16 (17)
69 KOG4341|consensus 95.6 0.00086 1.9E-08 49.5 -3.0 175 6-180 211-433 (483)
70 KOG3864|consensus 95.0 0.00072 1.6E-08 45.1 -4.4 76 105-180 102-183 (221)
71 smart00369 LRR_TYP Leucine-ric 94.4 0.039 8.5E-07 23.8 1.8 17 57-73 3-19 (26)
72 smart00370 LRR Leucine-rich re 94.4 0.039 8.5E-07 23.8 1.8 17 57-73 3-19 (26)
73 KOG4308|consensus 93.5 0.00015 3.1E-09 55.4 -11.5 20 5-24 109-128 (478)
74 KOG1947|consensus 91.0 0.057 1.2E-06 41.4 -0.4 35 9-43 186-223 (482)
75 PF13516 LRR_6: Leucine Rich r 89.2 0.2 4.3E-06 21.0 0.8 14 127-140 3-16 (24)
76 smart00365 LRR_SD22 Leucine-ri 87.8 0.55 1.2E-05 20.4 1.7 14 105-118 3-16 (26)
77 smart00364 LRR_BAC Leucine-ric 85.8 0.66 1.4E-05 20.1 1.4 18 11-28 2-19 (26)
78 KOG3864|consensus 85.6 0.053 1.2E-06 36.5 -3.1 76 58-134 103-184 (221)
79 KOG3763|consensus 84.3 0.51 1.1E-05 36.8 1.1 61 102-162 216-283 (585)
80 smart00368 LRR_RI Leucine rich 84.1 0.82 1.8E-05 20.1 1.4 14 127-140 3-16 (28)
81 KOG1947|consensus 81.9 1 2.2E-05 34.5 2.0 90 3-92 206-307 (482)
82 KOG0473|consensus 79.5 0.018 4E-07 39.7 -7.1 84 31-116 39-123 (326)
83 KOG4341|consensus 78.7 1.8 3.8E-05 32.9 2.2 128 8-136 291-436 (483)
84 KOG0473|consensus 73.1 0.035 7.7E-07 38.4 -7.1 86 52-139 38-124 (326)
85 smart00367 LRR_CC Leucine-rich 63.8 5.8 0.00013 16.8 1.3 12 10-21 1-12 (26)
86 KOG3763|consensus 61.5 4.2 9.1E-05 32.1 1.0 34 11-44 218-254 (585)
87 TIGR00864 PCC polycystin catio 38.7 25 0.00055 33.7 2.3 30 40-69 1-32 (2740)
88 TIGR00864 PCC polycystin catio 37.9 22 0.00048 34.1 1.8 32 62-93 1-32 (2740)
89 smart00446 LRRcap occurring C- 35.9 28 0.00061 15.1 1.1 15 5-19 7-21 (26)
No 1
>KOG4194|consensus
Probab=99.82 E-value=4.6e-21 Score=141.84 Aligned_cols=173 Identities=25% Similarity=0.352 Sum_probs=75.1
Q ss_pred cCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911 9 NSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
..+.|+.+|++.|.++.++ +.|..-.++++|++++|+|+.+ +.|..+.+|..|.++.|.++.++...|.+++.|+.|
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 3334444444444444443 3333334444444444444444 344444444444444444444444444444444444
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCce
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRL 162 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~ 162 (183)
++..|+++.+....|+++++|+.+.+.+|.+..+. .|..+.+++++++..|.++.+...++.. +.|+.|++++|.+.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 44443333222222222222222222222222221 2444445555555555555444333333 55555555555555
Q ss_pred eeCCCCcCCCcceeEEEEE
Q psy13911 163 HVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 163 ~~~~~~~~~~~~l~~l~l~ 181 (183)
.+.+..+..+++|+.|+|+
T Consensus 307 rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred eeecchhhhcccceeEecc
Confidence 5555555555555555543
No 2
>KOG4194|consensus
Probab=99.82 E-value=4.4e-22 Score=147.16 Aligned_cols=140 Identities=24% Similarity=0.309 Sum_probs=83.6
Q ss_pred hhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911 7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 83 (183)
|..+.+|..|.++.|.++.+| ..|+.+++|+.|++..|+|... ..|..+++|+.+.+..|.+..+.+++|..+.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 334445555555555555555 3444555666666655555544 4455566666666666666666666666666666
Q ss_pred EEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC--CCccCCCcccEEeccCcccccccCCCC
Q psy13911 84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC--PTLYLSSSLRVLDLSYNHLERLNLNTL 146 (183)
Q Consensus 84 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~~~~ 146 (183)
++++..|++..+..++..+++.|+.|+++.|.|..+ ..|..+++|+.|+++.|.++..+...+
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 776666666666655555666666666666666653 346666666666666666666554443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=9.7e-19 Score=142.41 Aligned_cols=176 Identities=24% Similarity=0.298 Sum_probs=102.7
Q ss_pred HHHhhcCCCCcEEEccCCcCC-Ccccc-ccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLK-MLPSL-NNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
+..+..++.|+.|++++|.+. .+|.. +..+++|+.|++++|.+.+......+++|++|++++|.+....+..+..+++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 456778888888888888876 46644 4477788888888877765433345666666776666666444444666666
Q ss_pred CcEEEecCCcCc-cCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911 82 MEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS 157 (183)
Q Consensus 82 L~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~ 157 (183)
|++|++++|.+. .+|..+ ..+++|+.|++++|.+.+ .| .++.+++|+.|++++|.+++..+..+.. ++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 666666666654 233333 255666666666665543 22 2445555555555555554433322222 455555555
Q ss_pred CCCceeeCCCCcCCCcceeEEEE
Q psy13911 158 GNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 158 ~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
+|.+++..|..+.++++|+.|++
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred CceeccccChhHhCCCCCCEEEC
Confidence 55554444445555555554444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=6e-19 Score=143.61 Aligned_cols=177 Identities=24% Similarity=0.227 Sum_probs=84.5
Q ss_pred HHHhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
+..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.+. ..+.++++|+.|++.+|.+....+..+..++
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 3445556666666666665542 445555555666666665555443 3344555555555555555544444455555
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS 157 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~ 157 (183)
+|++|++.+|.+....+..+..+++|+.|++++|.+.+ .| .+..+++|+.|++++|.+.+..+..+.. ++|++|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 55555555555442222222244555555555554443 22 2334444555555555444332222211 444444444
Q ss_pred CCCceeeCCCCcCCCcceeEEEE
Q psy13911 158 GNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 158 ~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
+|.+.+..|..+..+++|+.|++
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEEC
Confidence 44444444444444444444443
No 5
>KOG0617|consensus
Probab=99.74 E-value=1.9e-20 Score=119.31 Aligned_cols=157 Identities=27% Similarity=0.369 Sum_probs=138.0
Q ss_pred cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+++.++.|.+++|.++.+|+.+..+.+|+.|.+++|+++.. ..++.+++|+.|++..|.+...+.+ |+.++-|+.+++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhc
Confidence 45667788999999999999999999999999999999998 7788999999999999999887776 999999999999
Q ss_pred cCCcCc--cCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceee
Q psy13911 88 SGNGIS--SLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV 164 (183)
Q Consensus 88 ~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 164 (183)
.+|.+. .+|..+| .+..|+.|.+++|.+.-+| ..+.+++|+.+.+.+|.+-+.+.+......+++|++++|.++-.
T Consensus 110 tynnl~e~~lpgnff-~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFF-YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccccCCcchh-HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 999887 6777777 7889999999999998876 58999999999999999888876665558899999999999877
Q ss_pred CCC
Q psy13911 165 DPN 167 (183)
Q Consensus 165 ~~~ 167 (183)
+|+
T Consensus 189 ppe 191 (264)
T KOG0617|consen 189 PPE 191 (264)
T ss_pred Chh
Confidence 553
No 6
>KOG0618|consensus
Probab=99.68 E-value=1.1e-18 Score=134.79 Aligned_cols=179 Identities=39% Similarity=0.608 Sum_probs=149.4
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccc--------------------------cccccccEEEccCCCCCCC--CCCCC
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLN--------------------------NENRYLEKLYLTSNALTDI--GPLNK 54 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~~--~~~~~ 54 (183)
++.+....+.|+.|++..|++..+|+.+ ..++.|+.|++.+|+++.. +.+-+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 3455667788888888888887665321 1123466677777777665 67778
Q ss_pred CCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEecc
Q psy13911 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLS 134 (183)
Q Consensus 55 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 134 (183)
+.+|+.|++++|.+..+++..+.++..|++|+++||.++.+|..+. .+..|++|...+|.+..+|.+..++.|+.+|++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva-~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVA-NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS 460 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHH-hhhhhHHHhhcCCceeechhhhhcCcceEEecc
Confidence 8999999999999999999999999999999999999999998776 889999999999999999999999999999999
Q ss_pred CcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEEe
Q psy13911 135 YNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQL 182 (183)
Q Consensus 135 ~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~ 182 (183)
.|.++.+......+ ++|++||++||.....+...|+.++++...++++
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 99999987777667 9999999999987777778888888888777764
No 7
>KOG0444|consensus
Probab=99.66 E-value=1.6e-18 Score=130.02 Aligned_cols=74 Identities=30% Similarity=0.398 Sum_probs=35.1
Q ss_pred ccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 106 LRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 106 L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
|..++++.|.+..+| .+..+.+|+.|++++|.|++.....-...++++|+++.|+++.. |.++..+++|+.||+
T Consensus 224 L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 224 LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHh
Confidence 333344444333333 23444455555555555555433322224555555555555544 455555555555543
No 8
>KOG0444|consensus
Probab=99.63 E-value=5.5e-18 Score=127.22 Aligned_cols=175 Identities=25% Similarity=0.314 Sum_probs=115.7
Q ss_pred HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCcccc--ccCcccccCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAIT--SLPDNCISAWS 80 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~ 80 (183)
|..+..++.+++|.+....+..+|..++.+.+|++|.+.+|++..+ +.++.++.|+.+.+..|+++ ++|+. +..+.
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~ 103 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLK 103 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccc
Confidence 3444556666666666666666776667777777777777776655 66667777777777776665 44444 45666
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCC
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSG 158 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~ 158 (183)
.|.+++++.|+++..|...- ..+++..|+++.|.|..+|. +.+++.|-.|++++|.+...|+..-...+|++|++++
T Consensus 104 dLt~lDLShNqL~EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred cceeeecchhhhhhcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 77777777777777776654 55667777777777777764 5566667777777777777665554446677777777
Q ss_pred CCceeeCCCCcCCCcceeEEEE
Q psy13911 159 NPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 159 n~~~~~~~~~~~~~~~l~~l~l 180 (183)
|++......-+..+++|+.|.+
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhc
Confidence 7766655555555555555544
No 9
>KOG0472|consensus
Probab=99.61 E-value=8.6e-19 Score=124.78 Aligned_cols=172 Identities=25% Similarity=0.291 Sum_probs=97.7
Q ss_pred HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
+..+.....+.++++++|.+..+++.++.+..+..++-.+|+++.. +++.++.++..+++.+|.++..++..+. +..|
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L 185 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRL 185 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHH
Confidence 3344445555555555555555555555555555555555555544 3344444555555555555555554333 5556
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCC------------------------CcccEEeccCccc
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS------------------------SSLRVLDLSYNHL 138 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------~~L~~l~l~~n~l 138 (183)
++++...|.++.+|+.+. .+.+|..|++.+|++..+|.|++| +++..+|+++|++
T Consensus 186 ~~ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 186 KHLDCNSNLLETLPPELG-GLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred HhcccchhhhhcCChhhc-chhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 666666666666665554 555555555555555555444444 5556666667777
Q ss_pred ccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEE
Q psy13911 139 ERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVY 179 (183)
Q Consensus 139 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 179 (183)
++.|.++....++.+||+++|.+++. |..++++ +|+++-
T Consensus 265 ke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLA 303 (565)
T ss_pred ccCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehh
Confidence 77665555556777777777777766 5556666 555543
No 10
>KOG0472|consensus
Probab=99.58 E-value=5e-18 Score=120.92 Aligned_cols=157 Identities=32% Similarity=0.375 Sum_probs=111.6
Q ss_pred HHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911 5 LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 83 (183)
..+.++.++..+++.+|.+...|...-.++.|++++.-.|-++.+ +.++.+.+|..+++..|++..+|. |..|+.|+
T Consensus 154 ~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~ 231 (565)
T KOG0472|consen 154 EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLK 231 (565)
T ss_pred hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHH
Confidence 333444444444444444444443222345555555555555555 455666667777777777777663 77888888
Q ss_pred EEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC-ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCce
Q psy13911 84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162 (183)
Q Consensus 84 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~ 162 (183)
+++++.|+++.+|.....++..+..||+.+|+++.+|. +..+.+|.++|+++|.++..+...... +++.|-+.||++.
T Consensus 232 Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 232 ELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 88888888888888777788999999999999999984 667788999999999999988665544 8889999999976
Q ss_pred ee
Q psy13911 163 HV 164 (183)
Q Consensus 163 ~~ 164 (183)
.+
T Consensus 311 Ti 312 (565)
T KOG0472|consen 311 TI 312 (565)
T ss_pred HH
Confidence 54
No 11
>KOG0617|consensus
Probab=99.58 E-value=2.2e-17 Score=105.37 Aligned_cols=142 Identities=24% Similarity=0.290 Sum_probs=126.3
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccc-cCcccccCCC
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITS-LPDNCISAWS 80 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~ 80 (183)
++.-++.+.+|+.|++.+|++..+|..++.+++|+.|.++-|++... ..|+.++.|+.|++++|.+.. ..++.|.-+.
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 45667889999999999999999999999999999999999988777 789999999999999998873 3455577788
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC-ccCCCcccEEeccCcccccccCCC
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLERLNLNT 145 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~~~~~ 145 (183)
+|+.+.+++|.++.+|..+. .+++|+.|.+.+|.+-+.|. ++.++.|+++++++|.++-++++.
T Consensus 128 tlralyl~dndfe~lp~dvg-~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVG-KLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHhcCCCcccCChhhh-hhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 99999999999999999887 89999999999998888884 888899999999999998887654
No 12
>KOG4237|consensus
Probab=99.56 E-value=1e-16 Score=113.91 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=62.1
Q ss_pred CCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEE
Q psy13911 102 SWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRV 178 (183)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l 178 (183)
.+++|+++++++|.++.+. .|.+...++.|.+..|.+..+....+.. ..|+.|++.+|+++.+.|.+|....+|.++
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 5677777888888777763 4667777778888888777776666655 788899999999999999999988888887
Q ss_pred EE
Q psy13911 179 YI 180 (183)
Q Consensus 179 ~l 180 (183)
.+
T Consensus 352 ~l 353 (498)
T KOG4237|consen 352 NL 353 (498)
T ss_pred eh
Confidence 65
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.1e-13 Score=108.65 Aligned_cols=152 Identities=33% Similarity=0.338 Sum_probs=78.0
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCC-----------------C-CCCCCEEeeCCccccccCc
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN-----------------K-CRQLNTLHVAYNAITSLPD 73 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~-l~~L~~l~l~~~~~~~~~~ 73 (183)
.|+.|++.+|.+..+|.. +++|+.|++++|++..++.+. . ..+|+.|++++|.++.++.
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence 344555555555555432 345667777776666542210 0 1245555555555554432
Q ss_pred ccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccE
Q psy13911 74 NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQY 153 (183)
Q Consensus 74 ~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~ 153 (183)
. ..+++.|++.+|.+..+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|.++.++.. +.+++.
T Consensus 360 l----p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l---~~~L~~ 426 (788)
T PRK15387 360 L----PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML---PSGLLS 426 (788)
T ss_pred C----CcccceehhhccccccCccc----ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc---hhhhhh
Confidence 1 12344444444444444321 23456666666666655532 23566666666666655421 245556
Q ss_pred EEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 154 LDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 154 l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
|++++|.++.+ |..+.+++.|+.+++
T Consensus 427 L~Ls~NqLt~L-P~sl~~L~~L~~LdL 452 (788)
T PRK15387 427 LSVYRNQLTRL-PESLIHLSSETTVNL 452 (788)
T ss_pred hhhccCccccc-ChHHhhccCCCeEEC
Confidence 66666666654 445556666666655
No 14
>KOG4237|consensus
Probab=99.49 E-value=3.2e-16 Score=111.42 Aligned_cols=167 Identities=24% Similarity=0.330 Sum_probs=105.9
Q ss_pred cEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCCCCCcEEEec-
Q psy13911 14 KVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAWSEMEELVLS- 88 (183)
Q Consensus 14 ~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~- 88 (183)
..+.+..|+|+.+| ..|+.+++|+.|++++|.|+.+ .+|..+..+..+-+.+ |.|+.++...|..+.+++-|.+.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 45777788888877 6778888888888888888887 6677777766555444 77777777666666555544443
Q ss_pred -----------------------CCcCccCCCCCCCCCCCccEEEeeCCcC-----------------------------
Q psy13911 89 -----------------------GNGISSLPNTIPQSWPHLRVLRLHSNHL----------------------------- 116 (183)
Q Consensus 89 -----------------------~~~l~~~~~~~~~~~~~L~~L~l~~~~~----------------------------- 116 (183)
+|.+..++...++.+..++++.+..|.+
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 3333334433333444444443333321
Q ss_pred -------------------CC--------------CC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCC
Q psy13911 117 -------------------TS--------------CP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160 (183)
Q Consensus 117 -------------------~~--------------~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~ 160 (183)
.+ .| .|..++.|+.+++++|+++++...+|.. ..+++|.+..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 00 01 1455567777777777777777666665 677777777777
Q ss_pred ceeeCCCCcCCCcceeEEEE
Q psy13911 161 RLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 161 ~~~~~~~~~~~~~~l~~l~l 180 (183)
+..+...+|.++..|+.|+|
T Consensus 310 l~~v~~~~f~~ls~L~tL~L 329 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSL 329 (498)
T ss_pred HHHHHHHhhhccccceeeee
Confidence 77777777777777777655
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=7.8e-13 Score=109.44 Aligned_cols=165 Identities=24% Similarity=0.306 Sum_probs=81.8
Q ss_pred CCCcEEEccCCcCCCccccccccccccEEEccCCC-CCCCCCCCCCCCCCEEeeCCcc-ccccCcccccCCCCCcEEEec
Q psy13911 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNA-LTDIGPLNKCRQLNTLHVAYNA-ITSLPDNCISAWSEMEELVLS 88 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~ 88 (183)
.+|+.|++.++.+..++..+..+++|+.++++++. +..++.+..+++|+.|++.+|. +..++ ..+..+.+|+.+++.
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCC
Confidence 34555555555555544444455555555555443 3333445555566666665543 22222 235555666666665
Q ss_pred CC-cCccCCCCCCCCCCCccEEEeeCCc-CCCCCCccCCCcccEEeccCcccccccCCC---------------------
Q psy13911 89 GN-GISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLRVLDLSYNHLERLNLNT--------------------- 145 (183)
Q Consensus 89 ~~-~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~--------------------- 145 (183)
+| .++.+|... .+++|+.|++++|. +..+|.. ..+|+.|++++|.+..++...
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 54 344444433 34555555555542 2222221 124555555555544433211
Q ss_pred ---------CCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 146 ---------LIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 146 ---------~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
..+++|+.|++++|+.....|..+.++++|+.|+|
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 00135666666666544444666667777776665
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.47 E-value=3.8e-14 Score=92.64 Aligned_cols=104 Identities=30% Similarity=0.405 Sum_probs=22.5
Q ss_pred cccEEEccCCCCCCCCCCC-CCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911 35 YLEKLYLTSNALTDIGPLN-KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113 (183)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 113 (183)
.++.|++.+|.|+.+..+. .+.+|+.|++++|.++.+.. +..++.|++|++++|.++.+.......+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3444444444444443333 23444444444444444332 33444444444444444444322111234445555555
Q ss_pred CcCCCCC---CccCCCcccEEeccCccccc
Q psy13911 114 NHLTSCP---TLYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 114 ~~~~~~~---~~~~~~~L~~l~l~~n~l~~ 140 (183)
|.+..+. .+..+++|+.|++.+|.+++
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 4444332 23344445555555554443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=6.8e-13 Score=104.45 Aligned_cols=155 Identities=30% Similarity=0.426 Sum_probs=83.3
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
.++.|++++|.+..+|..+. .+|+.|++++|.++.++. .-..+|+.|++++|.+..++.. + ..+|+.|++++|.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~LP~~-l--~s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITELPER-L--PSALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCccCcCChh-H--hCCCCEEECcCCc
Confidence 46666666666666664332 366666666666665421 0123456666666665554432 2 2356666666666
Q ss_pred CccCCCCCCCCCCCccEEEeeCCcCCCCCC-cc-------------------CCCcccEEeccCcccccccCCCCCCCCc
Q psy13911 92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LY-------------------LSSSLRVLDLSYNHLERLNLNTLIPKQL 151 (183)
Q Consensus 92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-------------------~~~~L~~l~l~~n~l~~~~~~~~~~~~l 151 (183)
++.+|..+. .+|+.|++++|.++.+|. +. ..++|+.|++++|.++.++... +++|
T Consensus 274 L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL 348 (754)
T PRK15370 274 ISCLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPEL 348 (754)
T ss_pred cCccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCcc
Confidence 665554332 356666666665555432 10 1135566666666665544221 2567
Q ss_pred cEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 152 QYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 152 ~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
+.|++++|.++.++ ..+. +.|+.|+|
T Consensus 349 ~~L~Ls~N~L~~LP-~~lp--~~L~~LdL 374 (754)
T PRK15370 349 QVLDVSKNQITVLP-ETLP--PTITTLDV 374 (754)
T ss_pred cEEECCCCCCCcCC-hhhc--CCcCEEEC
Confidence 77777777776543 2221 35666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=5.7e-13 Score=104.86 Aligned_cols=147 Identities=31% Similarity=0.436 Sum_probs=91.9
Q ss_pred CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCC-CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIG-PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
++|+.|++++|.+..+|..+. ..|+.|++++|.+..++ .+ ..+|+.|++++|.+..++.. + ..+|+.|++++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL--PSALQSLDLFHNKISCLPEN-L--PEELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH--hCCCCEEECcCCccCccccc-c--CCCCcEEECCC
Confidence 467778888777777765432 35666666666665541 11 13455555555555544332 1 13455555555
Q ss_pred CcCccCCCCCC------------------CCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCc
Q psy13911 90 NGISSLPNTIP------------------QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQL 151 (183)
Q Consensus 90 ~~l~~~~~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l 151 (183)
|.++.+|..+. ...++|+.|++++|.++.+|.. -.++|+.|++++|.++.++... +++|
T Consensus 293 N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~l--p~~L 369 (754)
T PRK15370 293 NSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPETL--PPTI 369 (754)
T ss_pred CccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCChhh--cCCc
Confidence 54444332111 0125688888888888877641 1368999999999998775432 3789
Q ss_pred cEEEcCCCCceeeCCC
Q psy13911 152 QYLDVSGNPRLHVDPN 167 (183)
Q Consensus 152 ~~l~l~~n~~~~~~~~ 167 (183)
++|++++|.++.+++.
T Consensus 370 ~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 370 TTLDVSRNALTNLPEN 385 (754)
T ss_pred CEEECCCCcCCCCCHh
Confidence 9999999999987543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=1.3e-12 Score=102.80 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI 49 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 49 (183)
+++.|.+.+|.++.+|.. +++|+.|++++|+++.+
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL 257 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc
Confidence 567777777777766643 35667777777766655
No 20
>KOG0618|consensus
Probab=99.42 E-value=9.4e-16 Score=118.93 Aligned_cols=177 Identities=29% Similarity=0.373 Sum_probs=113.2
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
++.+++.|.+|+.+...+|.++++|..+....+|+.+....|.++.++. .....+|++|++..|.+..+++..+.....
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 4577778888888888888887777777777777777777777777733 344788888888888887776654433222
Q ss_pred -CcEEEecCCcCccCCC------------------------CCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEecc
Q psy13911 82 -MEELVLSGNGISSLPN------------------------TIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLS 134 (183)
Q Consensus 82 -L~~l~l~~~~l~~~~~------------------------~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~ 134 (183)
++.++.+.+.+...|. -.+...+.|+.|+++.|++..+|+ +.++..|++|+++
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 4444444333333221 111245666666666666666653 5566666667777
Q ss_pred CcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 135 YNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 135 ~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+|+++.++........|++|...+|.+... | .+..++.|+.+|++
T Consensus 416 GNkL~~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 416 GNKLTTLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLS 460 (1081)
T ss_pred cchhhhhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecc
Confidence 776666653333336666677777776666 3 66677777777765
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.40 E-value=6.5e-14 Score=91.53 Aligned_cols=125 Identities=34% Similarity=0.420 Sum_probs=44.1
Q ss_pred cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS 88 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 88 (183)
++..++.|++.++.++.+...-..+.+|+.|++++|.++.+..+..++.|+.|++++|.++.+.......+++|++|+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 44466777788777777654333466777788888877777777777778888888887777654322356778888888
Q ss_pred CCcCccCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEec
Q psy13911 89 GNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDL 133 (183)
Q Consensus 89 ~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l 133 (183)
+|.+..+.. .....+++|+.|++.+|.++..+. +..+|+|+.||-
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777765543 122356777778887777765442 455567776654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=3.1e-14 Score=102.71 Aligned_cols=178 Identities=26% Similarity=0.253 Sum_probs=104.7
Q ss_pred HHHHhhcCCCCcEEEccCCcCCC-ccccccccc---cccEEEccCCCCCCC------CCCCCC-CCCCEEeeCCcccccc
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKM-LPSLNNENR---YLEKLYLTSNALTDI------GPLNKC-RQLNTLHVAYNAITSL 71 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~---~L~~L~l~~~~~~~~------~~~~~l-~~L~~l~l~~~~~~~~ 71 (183)
+..++..+++|+.|+++++.+.. .+..+..+. +|+.|++++|++... ..+..+ ++|+.+++.+|.++..
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 34556667777788887777663 223333333 377777777776632 233445 6777788877776621
Q ss_pred ----CcccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCc
Q psy13911 72 ----PDNCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYN 136 (183)
Q Consensus 72 ----~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n 136 (183)
....+..+.+++++++.+|.++. ++.... ..++|+.|++++|.+++.. .+..+++|+.|++++|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 12224455677777777776652 111122 3457788888877766421 2455677888888887
Q ss_pred ccccccCCCCC------CCCccEEEcCCCCceeeC----CCCcCCCcceeEEEEE
Q psy13911 137 HLERLNLNTLI------PKQLQYLDVSGNPRLHVD----PNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 137 ~l~~~~~~~~~------~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~ 181 (183)
.+++.....+. .+.+++|++++|.+++.. ...+..+++|+.++++
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 77653222111 157778888887775211 2344555667776654
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=2e-11 Score=101.31 Aligned_cols=146 Identities=23% Similarity=0.303 Sum_probs=89.3
Q ss_pred CcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCcc-ccccCcccccCCCCCcEEEecCC
Q psy13911 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNA-ITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
|+.|++.++.+..+|..+ .+.+|+.|+++++.+... ..+..+++|+.++++++. +..++. +..+++|+.|++.+|
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence 444444444444455444 345667777777666655 445567777777777643 333332 556677777777775
Q ss_pred -cCccCCCCCCCCCCCccEEEeeCC-cCCCCCCccCCCcccEEeccCccc-ccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911 91 -GISSLPNTIPQSWPHLRVLRLHSN-HLTSCPTLYLSSSLRVLDLSYNHL-ERLNLNTLIPKQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 91 -~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~l~l~~n~l-~~~~~~~~~~~~l~~l~l~~n~~~~~~ 165 (183)
.+..+|..+. .+++|+.|++++| .+..+|....+++|+.|++++|.. ..++ . ...++++|++++|.+..++
T Consensus 668 ~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-~--~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 668 SSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP-D--ISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCccccchhhh-ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc-c--ccCCcCeeecCCCcccccc
Confidence 3456665544 6777777777776 555666544667788888877632 2222 1 1267788888888876653
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.35 E-value=9.8e-13 Score=97.71 Aligned_cols=171 Identities=28% Similarity=0.382 Sum_probs=125.6
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccc-cccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENR-YLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE 84 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 84 (183)
+...+.++.+++.++.+..++....... +|+.|++++|++..+ ..+..++.|+.|++++|.+..+++. ....+.++.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhh
Confidence 4455778899999999999988877774 899999999999888 6788899999999999999988764 336788999
Q ss_pred EEecCCcCccCCCCCCCCCCCccEEEeeCCc-CCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCcee
Q psy13911 85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163 (183)
Q Consensus 85 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~ 163 (183)
+++++|.++.+|.... ....|+++.+++|. +.....+.....+..+.+.+|.+...+......+.+++|++++|.++.
T Consensus 191 L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 191 LDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 9999999998887642 34568888888884 333334566666666666666665532222223557777777777776
Q ss_pred eCCCCcCCCcceeEEEEE
Q psy13911 164 VDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 164 ~~~~~~~~~~~l~~l~l~ 181 (183)
++. +....+++.++++
T Consensus 270 i~~--~~~~~~l~~L~~s 285 (394)
T COG4886 270 ISS--LGSLTNLRELDLS 285 (394)
T ss_pred ccc--ccccCccCEEecc
Confidence 644 6666666666653
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=1e-13 Score=100.09 Aligned_cols=178 Identities=24% Similarity=0.249 Sum_probs=109.2
Q ss_pred HHHHhhcCCCCcEEEccCCcCCC-------ccccccccccccEEEccCCCCCCC--CCCCCC---CCCCEEeeCCccccc
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKM-------LPSLNNENRYLEKLYLTSNALTDI--GPLNKC---RQLNTLHVAYNAITS 70 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l---~~L~~l~l~~~~~~~ 70 (183)
+...+...+.++++++.++.+.. ++..+..+++|+.|++++|.+... ..+..+ ++|+.|++++|.+..
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 44556667777888887776652 223455567888888888877643 222222 458888888877662
Q ss_pred c----CcccccCC-CCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCC--C----CccCCCcccEEecc
Q psy13911 71 L----PDNCISAW-SEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSC--P----TLYLSSSLRVLDLS 134 (183)
Q Consensus 71 ~----~~~~~~~~-~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~~~L~~l~l~ 134 (183)
. ....+..+ ++++.+++.+|.++. +... +..+..+++|++++|.+++. + .+...+.|+.++++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence 1 11224445 778888888887762 2212 22556788888888877742 1 23444688888888
Q ss_pred CcccccccCCCC----C-CCCccEEEcCCCCceeeCCCCcC-----CCcceeEEEEE
Q psy13911 135 YNHLERLNLNTL----I-PKQLQYLDVSGNPRLHVDPNHFK-----SYRSYVRVYIQ 181 (183)
Q Consensus 135 ~n~l~~~~~~~~----~-~~~l~~l~l~~n~~~~~~~~~~~-----~~~~l~~l~l~ 181 (183)
+|.+++.....+ . .++|++|++++|++++.....+. ..+.|+.++++
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 887765432221 1 26788888888887753222221 23677777764
No 26
>KOG1909|consensus
Probab=99.25 E-value=8.7e-14 Score=97.64 Aligned_cols=180 Identities=24% Similarity=0.271 Sum_probs=133.5
Q ss_pred cHHHHhhcCCCCcEEEccCCcCCC--cc---ccccccccccEEEccCCCCCCC--C-------------CCCCCCCCCEE
Q psy13911 2 ALELFLQNSSKLKVLNISKNCLKM--LP---SLNNENRYLEKLYLTSNALTDI--G-------------PLNKCRQLNTL 61 (183)
Q Consensus 2 ~~~~~~~~~~~L~~l~l~~~~~~~--~~---~~~~~~~~L~~L~l~~~~~~~~--~-------------~~~~l~~L~~l 61 (183)
.+.+++..++.|+.++++.|-+.. ++ ..++.+..|++|++.+|.+... . ....-+.|+++
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 356778899999999999998763 33 5577789999999999998766 1 13456789999
Q ss_pred eeCCccccccC----cccccCCCCCcEEEecCCcCcc----CCCCCCCCCCCccEEEeeCCcCCCCC------CccCCCc
Q psy13911 62 HVAYNAITSLP----DNCISAWSEMEELVLSGNGISS----LPNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSS 127 (183)
Q Consensus 62 ~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~ 127 (183)
....|.+...+ ...++..+.++.+.+..|++.. .-...+..++.|+.|++.+|.++... .+..++.
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 99999887433 3446778899999999998762 11233448899999999999888532 4677788
Q ss_pred ccEEeccCcccccccCCCCCC------CCccEEEcCCCCceeeC----CCCcCCCcceeEEEEE
Q psy13911 128 LRVLDLSYNHLERLNLNTLIP------KQLQYLDVSGNPRLHVD----PNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 128 L~~l~l~~n~l~~~~~~~~~~------~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~ 181 (183)
|+.+++++|.+.+-+..++.. ++|+.+.+.+|.++.-. ..++...|.|..|.|+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 999999999888776555433 78999999999876422 3344556666666553
No 27
>KOG3207|consensus
Probab=99.21 E-value=2.4e-12 Score=93.05 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=111.3
Q ss_pred HHhhcCCCCcEEEccCCcCCCc---cccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCcccccc-Cccccc
Q psy13911 5 LFLQNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSL-PDNCIS 77 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~-~~~~~~ 77 (183)
.+...|+.++.|+++.|-+..+ -.....+++|+.|.++.|++... ..-..++.|+.|.++.|+++-- ......
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 3566777888888877766542 24455677788888887776654 1122456777788887777611 122245
Q ss_pred CCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCC------C-
Q psy13911 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTL------I- 147 (183)
Q Consensus 78 ~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~------~- 147 (183)
.+++++.|++.+|..-.........++.|++|++++|.+...+ ..+.++.|..++++.++++++..... .
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 6778888888877321111111124577889999999877654 46777888888888888877644332 1
Q ss_pred CCCccEEEcCCCCceeeC-CCCcCCCcceeEEE
Q psy13911 148 PKQLQYLDVSGNPRLHVD-PNHFKSYRSYVRVY 179 (183)
Q Consensus 148 ~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~ 179 (183)
.+++++|++..|++.+.. ...+..+++|+.+.
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhh
Confidence 178999999999886653 23333444444443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=1.1e-11 Score=92.09 Aligned_cols=161 Identities=32% Similarity=0.377 Sum_probs=127.9
Q ss_pred HHHhhcCC-CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCC-CCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 4 ELFLQNSS-KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN-KCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 4 ~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
+....... +|+.+++++|.+..++..+..++.|+.|++++|++..+.... ..+.|+.+++++|.+..+++. ......
T Consensus 132 ~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~ 210 (394)
T COG4886 132 PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSA 210 (394)
T ss_pred ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh-hhhhhh
Confidence 33444553 899999999999999888889999999999999999985544 889999999999999988874 345566
Q ss_pred CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911 82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160 (183)
Q Consensus 82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 160 (183)
|+++.+.+|.+...+.... ...++..+.+.+|.+...+ ..+.++.++++++++|.++++.. .....+++.+++++|.
T Consensus 211 L~~l~~~~N~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 211 LEELDLSNNSIIELLSSLS-NLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred hhhhhhcCCcceecchhhh-hcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCcc
Confidence 9999999996655555554 7788888888888877743 46777789999999999999876 2223899999999998
Q ss_pred ceeeCCC
Q psy13911 161 RLHVDPN 167 (183)
Q Consensus 161 ~~~~~~~ 167 (183)
+....+.
T Consensus 289 ~~~~~~~ 295 (394)
T COG4886 289 LSNALPL 295 (394)
T ss_pred ccccchh
Confidence 8765443
No 29
>KOG0532|consensus
Probab=99.16 E-value=8.1e-13 Score=98.35 Aligned_cols=145 Identities=29% Similarity=0.386 Sum_probs=69.7
Q ss_pred EEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCcc
Q psy13911 16 LNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94 (183)
Q Consensus 16 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 94 (183)
.+++.|.+..+|..+..+..|+.+.+..|.+..+ .++.++..|..++++.|+++.++.. + +.--|+.+.+.+|.++.
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-l-C~lpLkvli~sNNkl~~ 157 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-L-CDLPLKVLIVSNNKLTS 157 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-h-hcCcceeEEEecCcccc
Confidence 4444555555554444455555555555554444 4444445555555555555544443 1 12234445555555555
Q ss_pred CCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCc----------------------ccEEeccCcccccccCCCCCCCCc
Q psy13911 95 LPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSS----------------------LRVLDLSYNHLERLNLNTLIPKQL 151 (183)
Q Consensus 95 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~----------------------L~~l~l~~n~l~~~~~~~~~~~~l 151 (183)
+|..+. ....|..++.+.|.+..+| .++++.+ |..||+++|++..+|........|
T Consensus 158 lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 158 LPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHL 236 (722)
T ss_pred CCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhh
Confidence 444443 4444444444444444433 2334444 555555555555555444434555
Q ss_pred cEEEcCCCCcee
Q psy13911 152 QYLDVSGNPRLH 163 (183)
Q Consensus 152 ~~l~l~~n~~~~ 163 (183)
++|-+.+|+++.
T Consensus 237 q~l~LenNPLqS 248 (722)
T KOG0532|consen 237 QVLQLENNPLQS 248 (722)
T ss_pred eeeeeccCCCCC
Confidence 555555555544
No 30
>KOG1259|consensus
Probab=99.14 E-value=3.4e-12 Score=88.74 Aligned_cols=127 Identities=22% Similarity=0.229 Sum_probs=75.2
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
.|+.+++++|.++.+..++.-.|.++.|+++.|++..+..+..+++|+.|++++|.++.+.. .-..+.+++++.+.+|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhh
Confidence 45566666666666666666666666666666666666556666666666666666654322 22345566666666666
Q ss_pred CccCCCCCCCCCCCccEEEeeCCcCCCC---CCccCCCcccEEeccCcccccc
Q psy13911 92 ISSLPNTIPQSWPHLRVLRLHSNHLTSC---PTLYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~l~l~~n~l~~~ 141 (183)
++.+.. .. .+-+|..|++++|+|... ..+++++-|+.+.+.+|.+..+
T Consensus 364 iE~LSG-L~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 364 IETLSG-LR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred Hhhhhh-hH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 655532 11 344556666666666543 3456666666666666655544
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=9.3e-11 Score=63.73 Aligned_cols=59 Identities=32% Similarity=0.550 Sum_probs=34.8
Q ss_pred CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCc
Q psy13911 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115 (183)
Q Consensus 57 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 115 (183)
+|++|++++|.++.+++..|..+++|+++++++|.++.++...+..+++|+++++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555666666665555555556666666666666665555555556666666665554
No 32
>KOG0532|consensus
Probab=99.12 E-value=8e-13 Score=98.38 Aligned_cols=153 Identities=24% Similarity=0.311 Sum_probs=124.9
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
++..++++..|+.++++.|+++.+|..+..++ |+.+.+++|++... ..++....|..++.+.|.+..++.. +..+.+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~s 190 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTS 190 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHH
Confidence 46677888899999999999998887766554 78888999998887 6666778888999999999988776 778889
Q ss_pred CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCC---ccEEEcC
Q psy13911 82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQ---LQYLDVS 157 (183)
Q Consensus 82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~---l~~l~l~ 157 (183)
++.+++..|++..+|.... .-.|..||++.|++..+| .|..+..|++|-|.+|.++..+......-. .++|+.+
T Consensus 191 lr~l~vrRn~l~~lp~El~--~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred HHHHHHhhhhhhhCCHHHh--CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 9999999999999999876 456899999999999999 599999999999999999987654443322 3455555
Q ss_pred CC
Q psy13911 158 GN 159 (183)
Q Consensus 158 ~n 159 (183)
-+
T Consensus 269 A~ 270 (722)
T KOG0532|consen 269 AC 270 (722)
T ss_pred hc
Confidence 44
No 33
>KOG1259|consensus
Probab=99.06 E-value=1e-11 Score=86.41 Aligned_cols=129 Identities=26% Similarity=0.311 Sum_probs=84.0
Q ss_pred cccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEe
Q psy13911 33 NRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL 111 (183)
Q Consensus 33 ~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l 111 (183)
+..|..+++++|.|+.+ ....-.+.++.|+++.|.+..+.. ++.+++|..+++++|.++.+..+-. .+-++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~-KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHL-KLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHh-hhcCEeeeeh
Confidence 34566777777777766 333445677777777777765543 5667777777777777766654433 5667777777
Q ss_pred eCCcCCCCCCccCCCcccEEeccCcccccccCCCCC--CCCccEEEcCCCCceee
Q psy13911 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNPRLHV 164 (183)
Q Consensus 112 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~--~~~l~~l~l~~n~~~~~ 164 (183)
+.|.+.+...++.+.+|..|++++|.|.......-. .+-|+.+.+.+|++..+
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 777777666666777777777777776654322211 16667777777776654
No 34
>KOG0531|consensus
Probab=99.05 E-value=2.2e-11 Score=90.94 Aligned_cols=156 Identities=24% Similarity=0.242 Sum_probs=98.0
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
+..+.+++.+++.+|.+..+...+..+++|+.|++++|.|+.+..+..++.|+.|++.+|.+..+.. +..+..++.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--Cccchhhhccc
Confidence 5566777777777777777766566777778888888777777666677777777777777776554 44567777777
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
+++|.+..+.......+.+++.+++.+|.+..+..+.....+..+++..|.++.+....... ..++.+++.+|++...
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence 77777776655101256677777777776665544333334444455555555442211110 1256666666666554
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=3e-10 Score=61.69 Aligned_cols=56 Identities=36% Similarity=0.519 Sum_probs=26.5
Q ss_pred ccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 36 LEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 36 L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
|+.|++++|+++.+ ..|..+++|+++++++|.++.+++.+|..+++|+++++++|.
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443 234444444444555455544444445555555555555443
No 36
>KOG3207|consensus
Probab=98.94 E-value=3.4e-10 Score=82.16 Aligned_cols=162 Identities=22% Similarity=0.156 Sum_probs=119.9
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCcccc--ccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCccccc
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSL--NNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCIS 77 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 77 (183)
+-++...+++|+.|+++.|.+....+. -..++.++.|.++.|.++.- .....+++|+.|.+..|...........
T Consensus 164 v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~ 243 (505)
T KOG3207|consen 164 VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK 243 (505)
T ss_pred HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh
Confidence 456678899999999999988754322 22468899999999999854 3355789999999998853333333355
Q ss_pred CCCCCcEEEecCCcCccCCCC-CCCCCCCccEEEeeCCcCCCCC--C------ccCCCcccEEeccCcccccccCCCCC-
Q psy13911 78 AWSEMEELVLSGNGISSLPNT-IPQSWPHLRVLRLHSNHLTSCP--T------LYLSSSLRVLDLSYNHLERLNLNTLI- 147 (183)
Q Consensus 78 ~~~~L~~l~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~------~~~~~~L~~l~l~~n~l~~~~~~~~~- 147 (183)
.+..|++|++.+|.+-.++.. ....++.|..|.++.+++.++. . ....++|++|++..|.+.++..-.-.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 578899999999988877742 2237889999999999888752 2 35568999999999999887543322
Q ss_pred -CCCccEEEcCCCCceee
Q psy13911 148 -PKQLQYLDVSGNPRLHV 164 (183)
Q Consensus 148 -~~~l~~l~l~~n~~~~~ 164 (183)
..+++.+.+..|.++..
T Consensus 324 ~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccchhhhhhccccccccc
Confidence 17788888888877543
No 37
>KOG0531|consensus
Probab=98.87 E-value=1.1e-10 Score=87.20 Aligned_cols=152 Identities=29% Similarity=0.347 Sum_probs=107.8
Q ss_pred cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
.+..++.+.+..|.+..+-..+..+.++..+++.+|.+..+.. +..+++|+.+++++|.|..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 3455566667777777655556777888888888888888866 7778888888888888887655 556677888888
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~ 165 (183)
.+|.++.+.... .+..++.+++++|.+..+.. ...+.+++.+.+.+|.+..+...... ..+..+++..|.++.+.
T Consensus 148 ~~N~i~~~~~~~--~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~-~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 148 SGNLISDISGLE--SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLL-KKLVLLSLLDNKISKLE 224 (414)
T ss_pred ccCcchhccCCc--cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHH-HHHHHhhcccccceecc
Confidence 888887775543 36778888888888877766 47777888888888877765422211 33444577777776654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=80.23 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=43.7
Q ss_pred ccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCcc-CCCCCCCCCCCccEEEee
Q psy13911 36 LEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS-LPNTIPQSWPHLRVLRLH 112 (183)
Q Consensus 36 L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~~L~~L~l~ 112 (183)
++.|++++|.+.+. ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|..+ ..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECc
Confidence 45555555555543 334555556666666655554444345555566666666665553 33222 255556666666
Q ss_pred CCcCCC
Q psy13911 113 SNHLTS 118 (183)
Q Consensus 113 ~~~~~~ 118 (183)
+|.+++
T Consensus 499 ~N~l~g 504 (623)
T PLN03150 499 GNSLSG 504 (623)
T ss_pred CCcccc
Confidence 655553
No 39
>KOG1909|consensus
Probab=98.80 E-value=2.4e-10 Score=80.63 Aligned_cols=160 Identities=23% Similarity=0.256 Sum_probs=120.3
Q ss_pred cHHHHhhcCCCCcEEEccCCcCCCcc--------------ccccccccccEEEccCCCCCCC------CCCCCCCCCCEE
Q psy13911 2 ALELFLQNSSKLKVLNISKNCLKMLP--------------SLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTL 61 (183)
Q Consensus 2 ~~~~~~~~~~~L~~l~l~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l 61 (183)
.+...++++..|++|.+.+|.+.... .-...-++|+.+.+.+|++... ..|...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 35678899999999999999987432 1234457899999999998876 346677899999
Q ss_pred eeCCccccc----cCcccccCCCCCcEEEecCCcCccCC----CCCCCCCCCccEEEeeCCcCCCCC------C-ccCCC
Q psy13911 62 HVAYNAITS----LPDNCISAWSEMEELVLSGNGISSLP----NTIPQSWPHLRVLRLHSNHLTSCP------T-LYLSS 126 (183)
Q Consensus 62 ~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~------~-~~~~~ 126 (183)
.+..|.+.. ....++..++.|+.||+++|.++.-. ...+..++.|+.+++++|.+..-. . -...+
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 999998763 23345788999999999999887211 122336778999999999887532 1 23468
Q ss_pred cccEEeccCcccccccCCCCC-----CCCccEEEcCCCCc
Q psy13911 127 SLRVLDLSYNHLERLNLNTLI-----PKQLQYLDVSGNPR 161 (183)
Q Consensus 127 ~L~~l~l~~n~l~~~~~~~~~-----~~~l~~l~l~~n~~ 161 (183)
+|+.+.+.+|.++.-...... .+.+..|++++|.+
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999999999988754322211 28999999999988
No 40
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.74 E-value=9.7e-08 Score=59.83 Aligned_cols=122 Identities=14% Similarity=0.312 Sum_probs=67.4
Q ss_pred CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCc
Q psy13911 50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSS 127 (183)
Q Consensus 50 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~ 127 (183)
.+|.++.+|+.+.+.. .+..+...+|..+.+++.+.+..+ +..++...+..+.+++.+.+.+ .+..++ .+..++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3566777788888774 566777777888878888888774 7777777777777888888865 444332 4667788
Q ss_pred ccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCccee
Q psy13911 128 LRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYV 176 (183)
Q Consensus 128 L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~ 176 (183)
++.+.+..+ +..++...+...+++.+.+.. .+..+...+|.+|++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT-T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCCCceEEEECC-CccEECCccccccccCC
Confidence 888888665 777777777667888888875 56777788888888774
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.72 E-value=2.8e-09 Score=73.43 Aligned_cols=159 Identities=23% Similarity=0.231 Sum_probs=118.3
Q ss_pred HHHHhhcCCCCcEEEccCCcCCC-cc----ccccccccccEEEccCCCCCCC-C--------------CCCCCCCCCEEe
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKM-LP----SLNNENRYLEKLYLTSNALTDI-G--------------PLNKCRQLNTLH 62 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~-~~----~~~~~~~~L~~L~l~~~~~~~~-~--------------~~~~l~~L~~l~ 62 (183)
+.+++..|+.++.++++.|.+.. .| +.++....|.+|.+++|.+..+ + -..+-|.|+++.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 45678899999999999998874 33 5567788999999999998776 1 124568999999
Q ss_pred eCCccccccCc----ccccCCCCCcEEEecCCcCccC--C----CCCCCCCCCccEEEeeCCcCCCCC------CccCCC
Q psy13911 63 VAYNAITSLPD----NCISAWSEMEELVLSGNGISSL--P----NTIPQSWPHLRVLRLHSNHLTSCP------TLYLSS 126 (183)
Q Consensus 63 l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~l~~~--~----~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~ 126 (183)
+..|.+...+. ..+.....++++.+..|.++.- . .+.+ .+.+|+.|++.+|.++... ....|+
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 99998764433 2245557899999999988721 1 1333 6789999999999888542 356667
Q ss_pred cccEEeccCcccccccCCCCCC-------CCccEEEcCCCCce
Q psy13911 127 SLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNPRL 162 (183)
Q Consensus 127 ~L~~l~l~~n~l~~~~~~~~~~-------~~l~~l~l~~n~~~ 162 (183)
.|+.|++.+|.++..+...+.. ++|..|-.++|.+.
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 7899999999877655433221 78888888888654
No 42
>KOG1859|consensus
Probab=98.71 E-value=6.7e-11 Score=90.87 Aligned_cols=126 Identities=26% Similarity=0.263 Sum_probs=97.1
Q ss_pred cccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911 35 YLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113 (183)
Q Consensus 35 ~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 113 (183)
+|...++++|.+... .++.-++.++.|+++.|+++++. .+..++.|++||+++|.++.+|......+ .|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 456666666666655 55566788999999999998876 48889999999999999998887544244 499999999
Q ss_pred CcCCCCCCccCCCcccEEeccCcccccccCCCCC--CCCccEEEcCCCCcee
Q psy13911 114 NHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNPRLH 163 (183)
Q Consensus 114 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~--~~~l~~l~l~~n~~~~ 163 (183)
|.++.+-.+.++.+|+.||+++|-+.+-..-.+. ...|+.|++.||++-+
T Consensus 242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9888877778888999999999977654221111 1788889999998765
No 43
>KOG1644|consensus
Probab=98.71 E-value=6e-08 Score=64.00 Aligned_cols=123 Identities=25% Similarity=0.329 Sum_probs=86.8
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCc
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 93 (183)
+.+++.+..+..+...-........+++++|.+.....|..+++|.+|.+..|.|+.+.+..-..++++.+|.+.+|++.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 34555555555443322223456778888888888888888888999999888888887775556778888888888777
Q ss_pred cCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCc
Q psy13911 94 SLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYN 136 (183)
Q Consensus 94 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n 136 (183)
.+.. .-...++.|+.|.+-+|.++..+. +..+++++.||++.-
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5443 222367888888888888776542 566788888887653
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.69 E-value=6.6e-08 Score=75.89 Aligned_cols=106 Identities=26% Similarity=0.326 Sum_probs=83.6
Q ss_pred CCEEeeCCccccccCcccccCCCCCcEEEecCCcCc-cCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEecc
Q psy13911 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLS 134 (183)
Q Consensus 58 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~ 134 (183)
+..|++.+|.+....+..+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++ +| .++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 677888999888776767889999999999999987 4554544 88999999999999886 45 47888999999999
Q ss_pred CcccccccCCCCCC--CCccEEEcCCCCceee
Q psy13911 135 YNHLERLNLNTLIP--KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 135 ~n~l~~~~~~~~~~--~~l~~l~l~~n~~~~~ 164 (183)
+|.+++..+..+.. .++..+++.+|+..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 99988655544332 4566888988876654
No 45
>KOG4579|consensus
Probab=98.68 E-value=2.2e-10 Score=70.85 Aligned_cols=137 Identities=22% Similarity=0.290 Sum_probs=99.6
Q ss_pred cccEEEccCCCCCCC----CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEE
Q psy13911 35 YLEKLYLTSNALTDI----GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR 110 (183)
Q Consensus 35 ~L~~L~l~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 110 (183)
.+..+++++|++..+ ..+.....|..+++++|.++++++.....++.++++++..|.++.+|.... .++.|+.++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A-am~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA-AMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh-hhHHhhhcc
Confidence 345567777776655 234455667788999999999888866677889999999999999998844 889999999
Q ss_pred eeCCcCCCCCC-ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCC
Q psy13911 111 LHSNHLTSCPT-LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSY 172 (183)
Q Consensus 111 l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~ 172 (183)
++.|.+...|. +..+.++..|+..+|.+..++...+.++..-..++..+++.+-.+..+..+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 99998887663 334678888898899888887775555444444555566665555444433
No 46
>KOG1859|consensus
Probab=98.59 E-value=2.6e-10 Score=87.72 Aligned_cols=123 Identities=28% Similarity=0.334 Sum_probs=91.3
Q ss_pred CcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92 (183)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 92 (183)
|...++++|.+..+...+.-++.++.|++++|+++...++..++.|++|++++|.+..++.-....+ .|..|++++|.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH
Confidence 4455667777777777777788889999999988888888888899999999988887765333333 488888888888
Q ss_pred ccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCccc
Q psy13911 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHL 138 (183)
Q Consensus 93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l 138 (183)
+++.. +- ++.+|+.||++.|.+.+.. .++.+..|+.|.+.+|.+
T Consensus 245 ~tL~g-ie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 245 TTLRG-IE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hhhhh-HH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77643 22 6788888888888777643 344555677777777754
No 47
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.48 E-value=8.2e-07 Score=55.60 Aligned_cols=103 Identities=18% Similarity=0.370 Sum_probs=43.8
Q ss_pred HhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
+|..+++|+.+.+.. .+..++ ..|..+.+++.+.+..+ +..+ .+|.++.+++.+.+.. .+..+....+..+.++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455666666666653 344444 44555555666666543 4443 4455555565555543 3444444445555555
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 113 (183)
+.+.+..+ +..++...+..+ .++.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55555443 444444444343 555555443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.48 E-value=1.7e-07 Score=47.03 Aligned_cols=38 Identities=34% Similarity=0.474 Sum_probs=20.6
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI 49 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 49 (183)
+|++|++++|.++.+|..+..+++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666666666555455555555555555555443
No 49
>KOG1644|consensus
Probab=98.45 E-value=5.4e-07 Score=59.59 Aligned_cols=120 Identities=22% Similarity=0.279 Sum_probs=86.9
Q ss_pred cEEEccCCCCCCCCCCCC-CCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCc
Q psy13911 37 EKLYLTSNALTDIGPLNK-CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115 (183)
Q Consensus 37 ~~L~l~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 115 (183)
+.+++.+.++..+..++. ......+++++|.+..... +..++.|.+|.++.|+++.+.+.+....+++..|.+.+|.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 455566555555533222 3456778899988876554 7788899999999999998888776667889999999998
Q ss_pred CCCC---CCccCCCcccEEeccCcccccccCCCC----CCCCccEEEcCC
Q psy13911 116 LTSC---PTLYLSSSLRVLDLSYNHLERLNLNTL----IPKQLQYLDVSG 158 (183)
Q Consensus 116 ~~~~---~~~~~~~~L~~l~l~~n~l~~~~~~~~----~~~~l~~l~l~~ 158 (183)
+..+ ..+..|++|++|.+-+|.+++....-. ..++++.||+++
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8754 457788899999998888877542211 118888888764
No 50
>KOG2120|consensus
Probab=98.40 E-value=4.8e-09 Score=73.14 Aligned_cols=153 Identities=25% Similarity=0.271 Sum_probs=90.7
Q ss_pred HHHhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCC-CCCC---CCCCCCCCCCEEeeCCccccccCccc--c
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNA-LTDI---GPLNKCRQLNTLHVAYNAITSLPDNC--I 76 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~--~ 76 (183)
...++.|++|+.+.+.++.+.+ +...+....+|+.++++.|. ++.. --+.+|+.|..|++++|.+..-...+ -
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 3456677777777777777765 44556666777777777664 4433 23567778888888877654211111 1
Q ss_pred cCCCCCcEEEecCCcCc----cCCCCCCCCCCCccEEEeeCC-cCCC--CCCccCCCcccEEeccCcccccccCCCC---
Q psy13911 77 SAWSEMEELVLSGNGIS----SLPNTIPQSWPHLRVLRLHSN-HLTS--CPTLYLSSSLRVLDLSYNHLERLNLNTL--- 146 (183)
Q Consensus 77 ~~~~~L~~l~l~~~~l~----~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~L~~l~l~~n~l~~~~~~~~--- 146 (183)
.--.+++.|+++|+.-. .+. .....++++.+||+++| .++. +..+..++-|+++.++.|.. ++++.+
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l 359 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLEL 359 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeee
Confidence 12346777777765211 111 12236788888888887 4443 12356667788888877632 111211
Q ss_pred -CCCCccEEEcCCC
Q psy13911 147 -IPKQLQYLDVSGN 159 (183)
Q Consensus 147 -~~~~l~~l~l~~n 159 (183)
..+.+.+|++.++
T Consensus 360 ~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGC 373 (419)
T ss_pred ccCcceEEEEeccc
Confidence 1277788887665
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.40 E-value=3.1e-07 Score=46.05 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=20.8
Q ss_pred CccEEEeeCCcCCCCCC-ccCCCcccEEeccCcccccc
Q psy13911 105 HLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 105 ~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~~ 141 (183)
+|++|++++|.++.+|. +..+++|+.|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666666666554 55666666666666655554
No 52
>KOG2982|consensus
Probab=98.39 E-value=3.6e-08 Score=68.89 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=34.1
Q ss_pred hcCCCCcEEEccCCcCCC---ccccccccccccEEEccCCCCCCC-CCC-CCCCCCCEEeeCCcccc
Q psy13911 8 QNSSKLKVLNISKNCLKM---LPSLNNENRYLEKLYLTSNALTDI-GPL-NKCRQLNTLHVAYNAIT 69 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~l~~L~~l~l~~~~~~ 69 (183)
..++.++.+++.+|.++. +...+.++|.++.|+++.|++... +.+ ....+|+++.+.+..+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 445556666666666653 334455566666666666665544 333 24455555555555443
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=3.4e-07 Score=63.42 Aligned_cols=174 Identities=19% Similarity=0.218 Sum_probs=102.8
Q ss_pred HHhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC------------CCCCCCCCCCEEeeCCcc
Q psy13911 5 LFLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI------------GPLNKCRQLNTLHVAYNA 67 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~~l~~L~~l~l~~~~ 67 (183)
..+..+..+..+++++|.+.. +...+.+-.+|+...++.--.... .++..|++|+.+++++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 445567788889999998874 223344455666666664322221 346678888888888887
Q ss_pred ccccCcc----cccCCCCCcEEEecCCcCccCCC--------------CCCCCCCCccEEEeeCCcCCCCC------Ccc
Q psy13911 68 ITSLPDN----CISAWSEMEELVLSGNGISSLPN--------------TIPQSWPHLRVLRLHSNHLTSCP------TLY 123 (183)
Q Consensus 68 ~~~~~~~----~~~~~~~L~~l~l~~~~l~~~~~--------------~~~~~~~~L~~L~l~~~~~~~~~------~~~ 123 (183)
+....+. .+.....+.+|.+.+|++..+.. .+. .-+.|+.+...+|++...+ .+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa-~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAA-DKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhc-cCCCceEEEeccchhccCcHHHHHHHHH
Confidence 7632221 14455678888888887663321 111 3467788888888776543 133
Q ss_pred CCCcccEEeccCcccccccCCCC------CCCCccEEEcCCCCceeeC----CCCcCCCcceeEEE
Q psy13911 124 LSSSLRVLDLSYNHLERLNLNTL------IPKQLQYLDVSGNPRLHVD----PNHFKSYRSYVRVY 179 (183)
Q Consensus 124 ~~~~L~~l~l~~n~l~~~~~~~~------~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~ 179 (183)
....++.+.+..|.|...+...+ ...+|+.||++.|.++... ..++..|+.|..|.
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 33467777777777665432221 1167777888777765432 23445555555444
No 54
>KOG2982|consensus
Probab=98.19 E-value=1.2e-06 Score=61.42 Aligned_cols=160 Identities=24% Similarity=0.261 Sum_probs=104.5
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccc-cccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccc--cCcccc
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITS--LPDNCI 76 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~--~~~~~~ 76 (183)
+...+.++|.++.|+++.|.+...-..+ ....+|+.|.+.+..+... ..+..++.++.+.++.|.... ..+...
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI 168 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence 4456789999999999999988633333 4677899999999887776 456778899999998886542 223333
Q ss_pred cCCC-CCcEEEecCCcCc---cCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCC-CCC
Q psy13911 77 SAWS-EMEELVLSGNGIS---SLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNT-LIP 148 (183)
Q Consensus 77 ~~~~-~L~~l~l~~~~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~-~~~ 148 (183)
..++ .++++...+|... ..-. ....++++..+.+..|.+++.. .....+.+.-|+++.|.|.++.... +..
T Consensus 169 e~~s~~v~tlh~~~c~~~~w~~~~~-l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~ 247 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQLWLNKNK-LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNG 247 (418)
T ss_pred cccchhhhhhhcCCcHHHHHHHHHh-HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcC
Confidence 3333 5677777666443 1111 1124577777788888776542 2444455667777777777764322 111
Q ss_pred -CCccEEEcCCCCcee
Q psy13911 149 -KQLQYLDVSGNPRLH 163 (183)
Q Consensus 149 -~~l~~l~l~~n~~~~ 163 (183)
+.+..|.+.+|++.+
T Consensus 248 f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSD 263 (418)
T ss_pred CchhheeeccCCcccc
Confidence 677777777777644
No 55
>KOG2120|consensus
Probab=98.13 E-value=2.2e-08 Score=69.95 Aligned_cols=168 Identities=23% Similarity=0.228 Sum_probs=107.9
Q ss_pred CCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc-cccccCc-ccccCCCCCcEE
Q psy13911 12 KLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN-AITSLPD-NCISAWSEMEEL 85 (183)
Q Consensus 12 ~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~-~~~~~~~-~~~~~~~~L~~l 85 (183)
.++++|++...++. +...++.+.+|+.|.+.++++... ..++.-..|+.++++.+ +++.... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47778888777764 446677888888888888887765 45666678888888764 4443221 225677888888
Q ss_pred EecCCcCc--cCCCCCCCCCCCccEEEeeCCc--C--CCCCC-ccCCCcccEEeccCc-ccccccCCCCCC-CCccEEEc
Q psy13911 86 VLSGNGIS--SLPNTIPQSWPHLRVLRLHSNH--L--TSCPT-LYLSSSLRVLDLSYN-HLERLNLNTLIP-KQLQYLDV 156 (183)
Q Consensus 86 ~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~--~--~~~~~-~~~~~~L~~l~l~~n-~l~~~~~~~~~~-~~l~~l~l 156 (183)
+++-|.+. .+...+..-..++..|+++++. + ..+.. ...|+.+..||+++| .+++--..++.. +.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88877554 1211222234667777777752 1 11221 567789999999987 444421122222 78889998
Q ss_pred CCCCceeeCCC---CcCCCcceeEEEEE
Q psy13911 157 SGNPRLHVDPN---HFKSYRSYVRVYIQ 181 (183)
Q Consensus 157 ~~n~~~~~~~~---~~~~~~~l~~l~l~ 181 (183)
+.| -+++|+ .+...+.|..|++.
T Consensus 346 sRC--Y~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 346 SRC--YDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhh--cCCChHHeeeeccCcceEEEEec
Confidence 877 445554 45778888888764
No 56
>KOG4658|consensus
Probab=98.12 E-value=1.9e-06 Score=69.91 Aligned_cols=125 Identities=23% Similarity=0.297 Sum_probs=83.9
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEeeCCcc--ccccCcccccCCCCCcEEEecCC-cCccCCCCCCCCCCCccEEE
Q psy13911 34 RYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA--ITSLPDNCISAWSEMEELVLSGN-GISSLPNTIPQSWPHLRVLR 110 (183)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~~~~~~L~~l~l~~~-~l~~~~~~~~~~~~~L~~L~ 110 (183)
...+.+.+-++.+.....-..++.|.+|-+.+|. +...+...|..++.|+.||+++| .+..+|..+. .+.+|+.|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhccc
Confidence 4566666666666665333445577777777764 56666666777888888888866 5567777775 777888888
Q ss_pred eeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCC-CCCccEEEcCCC
Q psy13911 111 LHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLI-PKQLQYLDVSGN 159 (183)
Q Consensus 111 l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~-~~~l~~l~l~~n 159 (183)
++++.++.+| .+.++..|.+|++..+......+.... ..+|++|.+...
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 8888888777 477777888888876644333333333 277777776544
No 57
>KOG4658|consensus
Probab=98.09 E-value=1.9e-06 Score=69.91 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=42.0
Q ss_pred HhhcCCCCcEEEccCC-cCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911 6 FLQNSSKLKVLNISKN-CLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 83 (183)
+|..++.|+.||+++| .+..+|..++.+-+|+.|+++++.+... ..+.++..|.+|++..+......+.....+.+|+
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 3555555555555544 3344555555555555555555555544 3445555555555554433323333333355555
Q ss_pred EEEecC
Q psy13911 84 ELVLSG 89 (183)
Q Consensus 84 ~l~l~~ 89 (183)
+|.+..
T Consensus 646 ~L~l~~ 651 (889)
T KOG4658|consen 646 VLRLPR 651 (889)
T ss_pred EEEeec
Confidence 555443
No 58
>KOG3665|consensus
Probab=98.09 E-value=1.6e-06 Score=68.58 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=72.4
Q ss_pred CCCcEEEccCCcCCC--cc-ccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911 11 SKLKVLNISKNCLKM--LP-SLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE 84 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~--~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 84 (183)
.+|++|++++..... .+ ....-+|.|++|.+.+..+... ....++++|..||+++++++.+ ..++.+.+|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 356666666653331 12 2223467777777776554433 3344567777777777777665 33666777777
Q ss_pred EEecCCcCccCC--CCCCCCCCCccEEEeeCCcCCCCC--------CccCCCcccEEeccCccccc
Q psy13911 85 LVLSGNGISSLP--NTIPQSWPHLRVLRLHSNHLTSCP--------TLYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 85 l~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~L~~l~l~~n~l~~ 140 (183)
|.+.+-.+.... ..++ .+++|+.||+++......+ .-..++.|+.||.++..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 766665444322 1344 6777777777776443322 12335677777777655443
No 59
>KOG4579|consensus
Probab=97.97 E-value=1.3e-07 Score=58.90 Aligned_cols=110 Identities=25% Similarity=0.385 Sum_probs=79.4
Q ss_pred CCEEeeCCccccccCcc--cccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEecc
Q psy13911 58 LNTLHVAYNAITSLPDN--CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLS 134 (183)
Q Consensus 58 L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~ 134 (183)
+..+++++|.+-.+... -+.....|+.+++++|.+..+|..+-..++.++.+++++|.+..+| .+..++.|+.++++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34566677765533321 1334456777899999999999877666778999999999999988 47778899999999
Q ss_pred CcccccccCCCCCCCCccEEEcCCCCceeeCCC
Q psy13911 135 YNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPN 167 (183)
Q Consensus 135 ~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 167 (183)
.|.+...+-......++..|+..+|.+..++-+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 998877654333336677778888877666543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=0.00035 Score=52.04 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=84.0
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCC-CCCCCCCCCCCCCCEEeeCCc-cccccCcccccCCCCCcE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNA-LTDIGPLNKCRQLNTLHVAYN-AITSLPDNCISAWSEMEE 84 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~ 84 (183)
+..+..++.|++++|.+..+|. -.++|+.|.+++|. +...+.. -..+|+.|.+.+| .+..++ .+|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP-------~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP-------ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc-------cccce
Confidence 4567889999999998888873 24568888888754 4333221 1357888888877 444332 35777
Q ss_pred EEecCCcCccCCCCCCCCCCCccEEEeeCCc-C--CCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911 85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNH-L--TSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160 (183)
Q Consensus 85 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 160 (183)
|++.++....++. -..+|+.|.+.++. . ...+. .-.++|++|.+++|.....+. ..+.+++.|+++.+.
T Consensus 117 L~L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~--~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSIKN----VPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILPE--KLPESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCccccc----CcchHhheecccccccccccccc-ccCCcccEEEecCCCcccCcc--cccccCcEEEecccc
Confidence 7777655433321 23456677765432 1 11121 122589999998887554332 234789999987763
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.00045 Score=51.45 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=63.6
Q ss_pred CCcEEEccCC-cCCCccccccccccccEEEccCC-CCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 12 KLKVLNISKN-CLKMLPSLNNENRYLEKLYLTSN-ALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 12 ~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
+|+.|.+.++ .+..+|..+ .++|+.|.+++| .+..+ ...|+.|.+..+....+.. -.++|+.|.+.+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n~~~~L~~----LPssLk~L~I~~ 141 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGSATDSIKN----VPNGLTSLSINS 141 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCCCCccccc----CcchHhheeccc
Confidence 6899999875 566677554 368999999988 45433 2357777776654432211 123466666643
Q ss_pred CcCc---cCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCc
Q psy13911 90 NGIS---SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYN 136 (183)
Q Consensus 90 ~~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n 136 (183)
+... .++. . -.++|+.|++++|.....|. .-..+|+.|.++.+
T Consensus 142 ~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 142 YNPENQARIDN-L--ISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIE 187 (426)
T ss_pred ccccccccccc-c--cCCcccEEEecCCCcccCcc-cccccCcEEEeccc
Confidence 2211 1111 1 23677888887776544432 11247777777655
No 62
>KOG3665|consensus
Probab=97.75 E-value=2.6e-05 Score=61.95 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=84.0
Q ss_pred HHhhcCCCCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccC-cccccCCCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP-DNCISAWSE 81 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~ 81 (183)
..-..+|.|+.|.+.+-.+.. +-....++++|..||+|++.++....++++++|+.|.+.+-.+.... -..+..+++
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 344679999999999876654 44667789999999999999999877888999999887765554311 112567899
Q ss_pred CcEEEecCCcCccCCC------CCCCCCCCccEEEeeCCcCCC
Q psy13911 82 MEELVLSGNGISSLPN------TIPQSWPHLRVLRLHSNHLTS 118 (183)
Q Consensus 82 L~~l~l~~~~l~~~~~------~~~~~~~~L~~L~l~~~~~~~ 118 (183)
|+.||++.......+. .....+++|+.||.+++.+..
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999999864442221 122257899999999877654
No 63
>KOG2123|consensus
Probab=97.73 E-value=3.2e-07 Score=63.67 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=46.3
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC--CCccEEEcCC
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSG 158 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~--~~l~~l~l~~ 158 (183)
+.+.|++.+|++..+.. ...++.|+.|.++-|+|+++..+..|+.|++|.|..|.|.++..-.... ++|+.|++..
T Consensus 20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 44555566665554422 2245666666666666666666666666666666666665553222111 6666666666
Q ss_pred CCceee
Q psy13911 159 NPRLHV 164 (183)
Q Consensus 159 n~~~~~ 164 (183)
|+-.+.
T Consensus 98 NPCc~~ 103 (388)
T KOG2123|consen 98 NPCCGE 103 (388)
T ss_pred CCcccc
Confidence 665443
No 64
>KOG2123|consensus
Probab=97.65 E-value=5.1e-07 Score=62.71 Aligned_cols=82 Identities=30% Similarity=0.349 Sum_probs=58.0
Q ss_pred cccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCC-CCCCCCCCccEEEe
Q psy13911 33 NRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN-TIPQSWPHLRVLRL 111 (183)
Q Consensus 33 ~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~~L~~L~l 111 (183)
+.+++.|++.+|.+..+.-...++.|+.|.++-|.++.+.+ +..|.+|++|++..|.+..+.. ....++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44566677777777776555567778888888888877665 7778888888888887776554 22237788888888
Q ss_pred eCCcC
Q psy13911 112 HSNHL 116 (183)
Q Consensus 112 ~~~~~ 116 (183)
..|.=
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 87743
No 65
>KOG2739|consensus
Probab=97.56 E-value=4.1e-05 Score=52.70 Aligned_cols=106 Identities=27% Similarity=0.280 Sum_probs=64.9
Q ss_pred ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCcccc---ccCcccccCCCCCcEEEecCCcCccCCC-CCCC
Q psy13911 26 LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT---SLPDNCISAWSEMEELVLSGNGISSLPN-TIPQ 101 (183)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~ 101 (183)
+......+..++.+.+.+..++....+..+++|+.|.++.|... .+... ...+++++++++++|.+..+.. ....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhh
Confidence 33444445666677777777777777777888888888887333 22222 3445888888888887763211 1112
Q ss_pred CCCCccEEEeeCCcCCCCC-----CccCCCcccEEe
Q psy13911 102 SWPHLRVLRLHSNHLTSCP-----TLYLSSSLRVLD 132 (183)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~-----~~~~~~~L~~l~ 132 (183)
.+.+|..|++.+|..+... .+.-+++|++++
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 5667777888887766542 244455666654
No 66
>KOG2739|consensus
Probab=96.76 E-value=0.00075 Score=46.68 Aligned_cols=99 Identities=24% Similarity=0.305 Sum_probs=62.7
Q ss_pred CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC--cCCC-CC-CccCCCcccEEeccCcccccccCCCCCC--CCcc
Q psy13911 79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN--HLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQ 152 (183)
Q Consensus 79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~--~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~--~~l~ 152 (183)
+..++.+.+.+..++++.... .+++|++|.++.| .+.+ ++ ....+++|++++++.|+++.+....-.. .+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFP--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCC--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 344555555565665554332 5789999999999 4442 22 3455589999999999888743222111 7788
Q ss_pred EEEcCCCCceeeCC---CCcCCCcceeEEE
Q psy13911 153 YLDVSGNPRLHVDP---NHFKSYRSYVRVY 179 (183)
Q Consensus 153 ~l~l~~n~~~~~~~---~~~~~~~~l~~l~ 179 (183)
.|++..|..+.... ..|.-+++|+.++
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 89998887765432 2455566665554
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.65 E-value=0.0013 Score=27.50 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=11.2
Q ss_pred ccEEEcCCCCceeeCCCCcCC
Q psy13911 151 LQYLDVSGNPRLHVDPNHFKS 171 (183)
Q Consensus 151 l~~l~l~~n~~~~~~~~~~~~ 171 (183)
|++|++++|.++.+++. |.+
T Consensus 2 L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTT-TTT
T ss_pred ccEEECCCCcCEeCChh-hcC
Confidence 55666666666655433 443
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.73 E-value=0.0089 Score=23.16 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=6.6
Q ss_pred CCcEEEccCCcCCCc
Q psy13911 12 KLKVLNISKNCLKML 26 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~ 26 (183)
+|+.|++++|.+..+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455566665555543
No 69
>KOG4341|consensus
Probab=95.55 E-value=0.00086 Score=49.55 Aligned_cols=175 Identities=26% Similarity=0.248 Sum_probs=101.7
Q ss_pred HhhcCCCCcEEEccCC-cCCC--ccccccccccccEEEccCCC---------------------------CCCC---CCC
Q psy13911 6 FLQNSSKLKVLNISKN-CLKM--LPSLNNENRYLEKLYLTSNA---------------------------LTDI---GPL 52 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~---------------------------~~~~---~~~ 52 (183)
.-..|++|++++++++ .+.+ +...+.+...++.+...+|. ++.. ..-
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 3457888999999887 3433 33444445444444444332 1111 011
Q ss_pred CCCCCCCEEeeCCcc-ccccCc-ccccCCCCCcEEEecCCc-CccCCCC-CCCCCCCccEEEeeCCcCCC---CC-CccC
Q psy13911 53 NKCRQLNTLHVAYNA-ITSLPD-NCISAWSEMEELVLSGNG-ISSLPNT-IPQSWPHLRVLRLHSNHLTS---CP-TLYL 124 (183)
Q Consensus 53 ~~l~~L~~l~l~~~~-~~~~~~-~~~~~~~~L~~l~l~~~~-l~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~-~~~~ 124 (183)
..+..|+.+..+++. +++.+- ..-..+.+|+.+.+.+++ ++..... +.++++.|+.+++.++.... +. ...+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 234556666665532 222221 112446788888888874 3322211 12367888888888874332 21 3567
Q ss_pred CCcccEEeccCcc-cccccCCCCC-----CCCccEEEcCCCCc-eeeCCCCcCCCcceeEEEE
Q psy13911 125 SSSLRVLDLSYNH-LERLNLNTLI-----PKQLQYLDVSGNPR-LHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 125 ~~~L~~l~l~~n~-l~~~~~~~~~-----~~~l~~l~l~~n~~-~~~~~~~~~~~~~l~~l~l 180 (183)
++.++.+.++++. +++.+...+. ...+..+.+++++. ++.....+..|++|+++++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 7899999999873 4444222222 26788889998874 5555678888999988654
No 70
>KOG3864|consensus
Probab=95.02 E-value=0.00072 Score=45.15 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=44.7
Q ss_pred CccEEEeeCCcCCCC--CCccCCCcccEEeccCc-ccccccCCCCCC--CCccEEEcCCCC-ceeeCCCCcCCCcceeEE
Q psy13911 105 HLRVLRLHSNHLTSC--PTLYLSSSLRVLDLSYN-HLERLNLNTLIP--KQLQYLDVSGNP-RLHVDPNHFKSYRSYVRV 178 (183)
Q Consensus 105 ~L~~L~l~~~~~~~~--~~~~~~~~L~~l~l~~n-~l~~~~~~~~~~--~~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l 178 (183)
.++.++.+++.|... ..+..++.++.+.+.+| ++.++...-+.. ++|+.|++++|+ |++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456677777666543 34666666777666655 344443322222 777777777775 565555566666666655
Q ss_pred EE
Q psy13911 179 YI 180 (183)
Q Consensus 179 ~l 180 (183)
.+
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 44
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.39 E-value=0.039 Score=23.80 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=7.5
Q ss_pred CCCEEeeCCccccccCc
Q psy13911 57 QLNTLHVAYNAITSLPD 73 (183)
Q Consensus 57 ~L~~l~l~~~~~~~~~~ 73 (183)
+|+.|++.+|.+..+++
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444443
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.39 E-value=0.039 Score=23.80 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=7.5
Q ss_pred CCCEEeeCCccccccCc
Q psy13911 57 QLNTLHVAYNAITSLPD 73 (183)
Q Consensus 57 ~L~~l~l~~~~~~~~~~ 73 (183)
+|+.|++.+|.+..+++
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444443
No 73
>KOG4308|consensus
Probab=93.49 E-value=0.00015 Score=55.41 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=9.9
Q ss_pred HHhhcCCCCcEEEccCCcCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLK 24 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~ 24 (183)
.++.....|..+++++|.+.
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHhcccccHhHhhcccCCCc
Confidence 34444455555555555444
No 74
>KOG1947|consensus
Probab=91.00 E-value=0.057 Score=41.38 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=15.9
Q ss_pred cCCCCcEEEccCC-cCCC--ccccccccccccEEEccC
Q psy13911 9 NSSKLKVLNISKN-CLKM--LPSLNNENRYLEKLYLTS 43 (183)
Q Consensus 9 ~~~~L~~l~l~~~-~~~~--~~~~~~~~~~L~~L~l~~ 43 (183)
.++.++.+.+..+ .+.. +......++.|+.+++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 3455555555444 2222 223334455555555554
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.21 E-value=0.2 Score=21.02 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=5.9
Q ss_pred cccEEeccCccccc
Q psy13911 127 SLRVLDLSYNHLER 140 (183)
Q Consensus 127 ~L~~l~l~~n~l~~ 140 (183)
+|+.|++++|.+++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 44555555554443
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.76 E-value=0.55 Score=20.37 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.7
Q ss_pred CccEEEeeCCcCCC
Q psy13911 105 HLRVLRLHSNHLTS 118 (183)
Q Consensus 105 ~L~~L~l~~~~~~~ 118 (183)
+|+.|+++.|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 44455555554443
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.82 E-value=0.66 Score=20.15 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=12.6
Q ss_pred CCCcEEEccCCcCCCccc
Q psy13911 11 SKLKVLNISKNCLKMLPS 28 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~ 28 (183)
+.|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777664
No 78
>KOG3864|consensus
Probab=85.63 E-value=0.053 Score=36.54 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCEEeeCCccccccCcccccCCCCCcEEEecCCcC-c--cCCCCCCCCCCCccEEEeeCC-cCCCC--CCccCCCcccEE
Q psy13911 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI-S--SLPNTIPQSWPHLRVLRLHSN-HLTSC--PTLYLSSSLRVL 131 (183)
Q Consensus 58 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l-~--~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~L~~l 131 (183)
++.++-+++.+....-.-+..+.+++.+.+.+|.- . .+. .+.+..++|+.|++++| +|++- ..+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34455555444433333344555555555554421 1 010 11113467777788777 66653 235555666666
Q ss_pred ecc
Q psy13911 132 DLS 134 (183)
Q Consensus 132 ~l~ 134 (183)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 654
No 79
>KOG3763|consensus
Probab=84.29 E-value=0.51 Score=36.80 Aligned_cols=61 Identities=30% Similarity=0.413 Sum_probs=37.2
Q ss_pred CCCCccEEEeeCCcCCCCCC----ccCCCcccEEeccCc--ccccc-cCCCCCCCCccEEEcCCCCce
Q psy13911 102 SWPHLRVLRLHSNHLTSCPT----LYLSSSLRVLDLSYN--HLERL-NLNTLIPKQLQYLDVSGNPRL 162 (183)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~l~l~~n--~l~~~-~~~~~~~~~l~~l~l~~n~~~ 162 (183)
+.+.+..+.+++|++..+.. ....+++..|+|++| .+... ....+....+++|.+.||++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 45667777788887776543 233467888888887 33322 111222266777888888764
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.06 E-value=0.82 Score=20.07 Aligned_cols=14 Identities=64% Similarity=0.710 Sum_probs=7.8
Q ss_pred cccEEeccCccccc
Q psy13911 127 SLRVLDLSYNHLER 140 (183)
Q Consensus 127 ~L~~l~l~~n~l~~ 140 (183)
+|++|++++|.+++
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45556666655544
No 81
>KOG1947|consensus
Probab=81.85 E-value=1 Score=34.52 Aligned_cols=90 Identities=26% Similarity=0.299 Sum_probs=56.5
Q ss_pred HHHHhhcCCCCcEEEccCC--cCCCc----cccccccccccEEEccCCC-CCCC--CCCC-CCCCCCEEeeCCcc-cccc
Q psy13911 3 LELFLQNSSKLKVLNISKN--CLKML----PSLNNENRYLEKLYLTSNA-LTDI--GPLN-KCRQLNTLHVAYNA-ITSL 71 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~--~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~--~~~~-~l~~L~~l~l~~~~-~~~~ 71 (183)
+......++.|+.++++++ ..... ......+.+++.++++++. ++.. ..+. .+++|+.|.+.++. +++.
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 4566778899999999873 22211 1234456788888888877 5555 2322 37788888866665 4422
Q ss_pred C-cccccCCCCCcEEEecCCcC
Q psy13911 72 P-DNCISAWSEMEELVLSGNGI 92 (183)
Q Consensus 72 ~-~~~~~~~~~L~~l~l~~~~l 92 (183)
. ......++.|+++++.++..
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHHHhcCcccEEeeecCcc
Confidence 2 22245567788888887643
No 82
>KOG0473|consensus
Probab=79.46 E-value=0.018 Score=39.73 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=45.2
Q ss_pred cccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEE
Q psy13911 31 NENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109 (183)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L 109 (183)
..+.....|+++.|++-.. ..|+-++.+..++++.|.+...+.. +.....+..++...|..+..|.... ..+.++.+
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~-k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQK-KEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCcccc-ccCCcchh
Confidence 3344555666666655444 4455555556666666665554443 4444445555555555555555443 45555555
Q ss_pred EeeCCcC
Q psy13911 110 RLHSNHL 116 (183)
Q Consensus 110 ~l~~~~~ 116 (183)
+..++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 5555543
No 83
>KOG4341|consensus
Probab=78.69 E-value=1.8 Score=32.92 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=77.3
Q ss_pred hcCCCCcEEEccCCc-CCC--ccccccccccccEEEccCCC-CCCC--C-CCCCCCCCCEEeeCCcccc--ccCcccccC
Q psy13911 8 QNSSKLKVLNISKNC-LKM--LPSLNNENRYLEKLYLTSNA-LTDI--G-PLNKCRQLNTLHVAYNAIT--SLPDNCISA 78 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~-~~~--~~~~~~~~~~L~~L~l~~~~-~~~~--~-~~~~l~~L~~l~l~~~~~~--~~~~~~~~~ 78 (183)
..+..|+.+..+++. ++. +.....+..+|+.+.++.|+ ++.. . --.+++.|+.+++..+... .-..+.-..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 456677788887763 333 22334567888888888886 4444 1 2245778888888776543 212333456
Q ss_pred CCCCcEEEecCCcCc------cCCCCCCCCCCCccEEEeeCCcCCCC---CCccCCCcccEEeccCc
Q psy13911 79 WSEMEELVLSGNGIS------SLPNTIPQSWPHLRVLRLHSNHLTSC---PTLYLSSSLRVLDLSYN 136 (183)
Q Consensus 79 ~~~L~~l~l~~~~l~------~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~l~l~~n 136 (183)
++.++.+.++.+..- .+..... ....+..+.+.++..... .....++.|+.+++-++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c-~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSC-SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccc-cccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 778888888765322 1222222 456677778877754431 24667778888877665
No 84
>KOG0473|consensus
Probab=73.05 E-value=0.035 Score=38.39 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=63.5
Q ss_pred CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccE
Q psy13911 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRV 130 (183)
Q Consensus 52 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~ 130 (183)
+......+.|+++.|.+...... ++.+..+..++++.+.+..+|.... +...+..++..+|.....| .++..+.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~-q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAK-QQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHH-HHHHHHHHHhhccchhhCCccccccCCcch
Confidence 34556677788888877766554 6667778888888888888887765 6666777788888777777 4777778888
Q ss_pred EeccCcccc
Q psy13911 131 LDLSYNHLE 139 (183)
Q Consensus 131 l~l~~n~l~ 139 (183)
+++..|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888777643
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.79 E-value=5.8 Score=16.78 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=6.4
Q ss_pred CCCCcEEEccCC
Q psy13911 10 SSKLKVLNISKN 21 (183)
Q Consensus 10 ~~~L~~l~l~~~ 21 (183)
|+.|++|+++++
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 345555555555
No 86
>KOG3763|consensus
Probab=61.55 E-value=4.2 Score=32.06 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=14.8
Q ss_pred CCCcEEEccCCcCCCcc---ccccccccccEEEccCC
Q psy13911 11 SKLKVLNISKNCLKMLP---SLNNENRYLEKLYLTSN 44 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~ 44 (183)
+.+..+.+++|.+..+. +.-...++|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444445555444322 22223445555555554
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.73 E-value=25 Score=33.72 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=23.5
Q ss_pred EccCCCCCCC--CCCCCCCCCCEEeeCCcccc
Q psy13911 40 YLTSNALTDI--GPLNKCRQLNTLHVAYNAIT 69 (183)
Q Consensus 40 ~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~ 69 (183)
+|++|+|+.+ ..|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4678888877 56778888888888888654
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.86 E-value=22 Score=34.07 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.0
Q ss_pred eeCCccccccCcccccCCCCCcEEEecCCcCc
Q psy13911 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93 (183)
Q Consensus 62 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 93 (183)
+|++|.|+.++...|..+.+|+.|++.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788899888888888889999999888665
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=35.89 E-value=28 Score=15.07 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHhhcCCCCcEEEcc
Q psy13911 5 LFLQNSSKLKVLNIS 19 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~ 19 (183)
..+..+|+|+.||..
T Consensus 7 ~Vi~~LPqL~~LD~~ 21 (26)
T smart00446 7 KVIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHHCCccceeccc
Confidence 356677777777764
Done!