Query psy13911
Match_columns 183
No_of_seqs 159 out of 2132
Neff 11.3
Searched_HMMs 29240
Date Fri Aug 16 23:39:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o6q_A Variable lymphocyte rec 99.9 1.7E-24 5.7E-29 151.7 19.3 171 11-181 37-213 (270)
2 3rfs_A Internalin B, repeat mo 99.9 1.5E-24 5.2E-29 152.0 18.0 174 7-181 37-213 (272)
3 1ozn_A Reticulon 4 receptor; N 99.9 4.8E-25 1.6E-29 155.5 15.2 174 7-180 52-232 (285)
4 3zyj_A Leucine-rich repeat-con 99.9 1.1E-24 3.7E-29 162.3 17.4 176 5-180 82-262 (440)
5 3zyi_A Leucine-rich repeat-con 99.9 1.6E-24 5.6E-29 161.8 17.0 177 5-181 93-274 (452)
6 3m19_A Variable lymphocyte rec 99.9 7.1E-24 2.4E-28 147.0 17.7 169 11-181 14-187 (251)
7 1ozn_A Reticulon 4 receptor; N 99.9 7.2E-24 2.5E-28 149.5 17.9 172 10-181 31-209 (285)
8 4fcg_A Uncharacterized protein 99.9 1.6E-24 5.6E-29 155.7 12.4 174 6-180 99-284 (328)
9 2o6q_A Variable lymphocyte rec 99.9 8E-23 2.7E-27 143.1 19.1 168 12-181 17-189 (270)
10 2z62_A TOLL-like receptor 4, v 99.9 7.3E-24 2.5E-28 148.8 12.7 170 12-181 29-232 (276)
11 3zyj_A Leucine-rich repeat-con 99.9 4.8E-23 1.6E-27 153.4 17.3 176 4-181 105-287 (440)
12 2xwt_C Thyrotropin receptor; s 99.9 1.4E-23 4.8E-28 144.5 13.0 169 11-181 31-213 (239)
13 1p9a_G Platelet glycoprotein I 99.9 1E-22 3.5E-27 143.9 16.7 167 12-180 32-202 (290)
14 3rfs_A Internalin B, repeat mo 99.9 2.8E-22 9.6E-27 140.5 18.7 160 6-166 58-222 (272)
15 3m19_A Variable lymphocyte rec 99.9 3.1E-22 1E-26 138.8 17.8 154 11-164 35-194 (251)
16 1h6u_A Internalin H; cell adhe 99.9 1E-22 3.4E-27 145.2 15.6 168 6-181 58-225 (308)
17 2z66_A Variable lymphocyte rec 99.9 4.2E-23 1.5E-27 146.9 13.5 175 6-181 73-256 (306)
18 3zyi_A Leucine-rich repeat-con 99.9 1E-22 3.6E-27 152.1 16.2 176 4-181 116-298 (452)
19 1p9a_G Platelet glycoprotein I 99.9 4.1E-22 1.4E-26 140.8 17.5 159 4-163 48-209 (290)
20 2z66_A Variable lymphocyte rec 99.9 2.2E-23 7.5E-28 148.4 10.9 175 7-181 48-231 (306)
21 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-23 7.8E-28 148.8 9.8 177 4-181 69-276 (313)
22 2id5_A Lingo-1, leucine rich r 99.9 1.4E-22 4.9E-27 152.2 14.6 59 122-180 244-303 (477)
23 4fcg_A Uncharacterized protein 99.9 7.3E-23 2.5E-27 147.1 12.3 177 3-181 119-309 (328)
24 2id5_A Lingo-1, leucine rich r 99.9 3.7E-22 1.3E-26 149.9 15.1 171 11-181 32-208 (477)
25 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.8E-26 144.0 17.2 115 5-119 63-180 (390)
26 2z62_A TOLL-like receptor 4, v 99.9 6.3E-22 2.2E-26 138.9 15.1 160 15-176 11-176 (276)
27 1xku_A Decorin; proteoglycan, 99.9 7.4E-22 2.5E-26 141.9 15.7 173 6-180 71-270 (330)
28 3oja_B Anopheles plasmodium-re 99.9 1.5E-21 5.2E-26 150.3 17.0 116 4-119 68-186 (597)
29 1ogq_A PGIP-2, polygalacturona 99.9 8.7E-23 3E-27 145.8 8.9 174 5-180 119-298 (313)
30 3v47_A TOLL-like receptor 5B a 99.9 1.9E-21 6.4E-26 145.3 16.4 124 58-181 277-403 (455)
31 2xwt_C Thyrotropin receptor; s 99.9 6.4E-22 2.2E-26 136.2 12.9 170 5-180 49-233 (239)
32 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.8E-26 143.9 14.9 133 9-141 43-180 (390)
33 1h6t_A Internalin B; cell adhe 99.9 1.2E-21 4.2E-26 138.5 14.1 167 7-181 42-208 (291)
34 1h6u_A Internalin H; cell adhe 99.9 8.2E-22 2.8E-26 140.5 13.2 167 7-181 37-203 (308)
35 1wwl_A Monocyte differentiatio 99.9 2E-22 6.8E-27 143.9 9.8 170 8-181 118-304 (312)
36 2v9t_B SLIT homolog 2 protein 99.9 5.7E-21 2E-25 129.9 16.5 149 14-164 14-167 (220)
37 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-21 5.1E-26 140.4 14.2 175 5-181 72-272 (332)
38 2z80_A TOLL-like receptor 2, v 99.9 3.6E-22 1.2E-26 144.8 10.2 169 12-180 53-229 (353)
39 3e6j_A Variable lymphocyte rec 99.9 1.2E-20 4E-25 129.1 17.1 150 13-164 21-174 (229)
40 1xku_A Decorin; proteoglycan, 99.9 8.6E-21 3E-25 136.3 17.0 177 4-181 138-327 (330)
41 3v47_A TOLL-like receptor 5B a 99.9 4.6E-21 1.6E-25 143.1 15.2 89 5-93 73-167 (455)
42 1ziw_A TOLL-like receptor 3; i 99.9 4.8E-21 1.6E-25 149.5 15.8 176 5-180 399-591 (680)
43 2z80_A TOLL-like receptor 2, v 99.9 2.9E-21 1E-25 140.0 13.6 172 8-181 28-206 (353)
44 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-22 1.2E-26 142.9 8.7 124 57-181 121-245 (317)
45 3t6q_A CD180 antigen; protein- 99.9 4.9E-21 1.7E-25 147.6 15.2 175 6-180 273-456 (606)
46 3oja_B Anopheles plasmodium-re 99.9 4.2E-21 1.4E-25 147.9 14.7 173 9-181 49-286 (597)
47 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-21 3.8E-26 151.2 11.4 177 4-181 369-553 (606)
48 3rgz_A Protein brassinosteroid 99.9 3.7E-21 1.3E-25 152.0 14.5 178 4-181 459-712 (768)
49 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-21 1.3E-25 138.3 13.2 176 4-181 95-302 (332)
50 4fmz_A Internalin; leucine ric 99.9 2.1E-21 7.2E-26 140.4 11.7 167 7-180 151-340 (347)
51 4eco_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 149.1 13.8 178 4-181 369-574 (636)
52 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-20 6.2E-25 146.2 17.7 136 5-140 43-185 (680)
53 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-20 4.7E-25 145.1 16.0 170 11-181 32-212 (606)
54 1xeu_A Internalin C; cellular 99.9 1.7E-21 5.7E-26 135.9 9.9 150 7-164 37-187 (263)
55 3rgz_A Protein brassinosteroid 99.9 4.7E-21 1.6E-25 151.4 13.5 175 6-181 437-688 (768)
56 4ezg_A Putative uncharacterize 99.9 2.2E-21 7.4E-26 129.9 9.9 154 8-163 41-195 (197)
57 4fmz_A Internalin; leucine ric 99.9 4.4E-21 1.5E-25 138.7 12.2 172 7-181 128-319 (347)
58 3oja_A Leucine-rich immune mol 99.9 2E-21 7E-26 146.3 10.6 169 12-181 35-245 (487)
59 4g8a_A TOLL-like receptor 4; l 99.9 2.3E-20 7.8E-25 144.2 16.6 168 12-180 53-231 (635)
60 2v70_A SLIT-2, SLIT homolog 2 99.9 2.3E-20 7.8E-25 126.9 14.6 149 14-164 14-168 (220)
61 3t6q_A CD180 antigen; protein- 99.9 7.5E-21 2.6E-25 146.6 13.7 135 6-140 52-193 (606)
62 2z63_A TOLL-like receptor 4, v 99.9 1.9E-20 6.5E-25 143.3 15.8 170 11-181 28-208 (570)
63 2o6s_A Variable lymphocyte rec 99.9 8.2E-21 2.8E-25 128.0 12.0 148 14-163 10-162 (208)
64 2o6s_A Variable lymphocyte rec 99.9 1.5E-19 5.3E-24 121.8 18.0 158 10-173 27-189 (208)
65 4eco_A Uncharacterized protein 99.9 2.5E-21 8.6E-26 150.1 9.9 138 3-141 198-368 (636)
66 4ecn_A Leucine-rich repeat pro 99.8 5.1E-21 1.7E-25 152.0 11.5 176 3-180 440-651 (876)
67 2z63_A TOLL-like receptor 4, v 99.8 7.5E-21 2.6E-25 145.5 11.7 174 8-181 344-526 (570)
68 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-20 1E-24 141.8 14.7 167 8-181 331-505 (549)
69 1m9s_A Internalin B; cell inva 99.8 1.5E-20 5.1E-25 144.5 12.5 152 7-164 61-212 (605)
70 4g8a_A TOLL-like receptor 4; l 99.8 1E-20 3.4E-25 146.2 11.4 160 14-175 34-199 (635)
71 1h6t_A Internalin B; cell adhe 99.8 1.6E-20 5.5E-25 132.8 11.4 155 6-166 63-217 (291)
72 4ecn_A Leucine-rich repeat pro 99.8 3.9E-20 1.3E-24 146.9 14.7 176 6-181 613-814 (876)
73 1xeu_A Internalin C; cellular 99.8 1.4E-20 4.9E-25 131.2 10.9 163 10-181 18-180 (263)
74 1o6v_A Internalin A; bacterial 99.8 6.9E-20 2.4E-24 137.3 15.3 129 8-141 196-324 (466)
75 2xot_A Amphoterin-induced prot 99.8 1.3E-20 4.5E-25 137.0 11.1 159 14-174 21-188 (361)
76 2z81_A CD282 antigen, TOLL-lik 99.8 5.3E-20 1.8E-24 140.3 13.7 169 12-180 27-203 (549)
77 1m9s_A Internalin B; cell inva 99.8 1E-19 3.5E-24 140.0 15.2 167 7-181 39-205 (605)
78 1o6v_A Internalin A; bacterial 99.8 1.7E-19 5.9E-24 135.2 15.2 167 7-181 217-383 (466)
79 3bz5_A Internalin-J, INLJ; leu 99.8 4.8E-19 1.6E-23 132.4 17.3 161 7-180 38-219 (457)
80 2v9t_B SLIT homolog 2 protein 99.8 3.6E-19 1.2E-23 121.0 15.2 143 37-181 14-160 (220)
81 1wwl_A Monocyte differentiatio 99.8 2E-20 7E-25 133.5 8.9 170 9-181 93-282 (312)
82 2xot_A Amphoterin-induced prot 99.8 5.9E-20 2E-24 133.6 10.7 154 11-164 39-204 (361)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-19 1.3E-23 136.1 15.4 149 31-181 350-505 (562)
84 2z7x_B TOLL-like receptor 1, v 99.8 3.9E-19 1.3E-23 134.8 15.0 170 11-181 302-476 (520)
85 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.9E-23 119.3 15.8 147 34-181 19-167 (229)
86 3j0a_A TOLL-like receptor 5; m 99.8 3.9E-19 1.3E-23 141.7 15.4 88 4-91 66-159 (844)
87 3bz5_A Internalin-J, INLJ; leu 99.8 2.2E-18 7.4E-23 128.9 18.1 164 6-181 59-241 (457)
88 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.3E-23 118.3 15.3 145 36-181 13-161 (220)
89 4ay9_X Follicle-stimulating ho 99.8 4.6E-19 1.6E-23 128.4 13.1 170 11-180 30-209 (350)
90 3cvr_A Invasion plasmid antige 99.8 1.9E-18 6.6E-23 131.8 16.6 150 13-181 82-238 (571)
91 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-20 7.8E-25 133.5 5.3 171 7-179 76-268 (317)
92 4glp_A Monocyte differentiatio 99.8 2.2E-20 7.4E-25 133.2 5.1 168 10-181 90-302 (310)
93 3sb4_A Hypothetical leucine ri 99.8 1.2E-18 4E-23 125.3 13.5 100 79-180 225-328 (329)
94 3j0a_A TOLL-like receptor 5; m 99.8 7.5E-19 2.6E-23 140.1 13.5 173 9-181 22-212 (844)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.7E-18 6E-23 132.5 14.5 157 9-172 29-194 (562)
96 4glp_A Monocyte differentiatio 99.8 1.3E-19 4.3E-24 129.3 7.6 171 11-181 64-259 (310)
97 3oja_A Leucine-rich immune mol 99.8 6.6E-20 2.2E-24 138.1 5.8 143 34-178 120-267 (487)
98 4ezg_A Putative uncharacterize 99.8 1E-18 3.5E-23 116.8 10.3 146 31-181 41-189 (197)
99 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-18 5.7E-23 131.4 12.5 151 14-171 3-162 (520)
100 3cvr_A Invasion plasmid antige 99.8 1.2E-17 4.2E-22 127.4 16.7 151 10-181 58-215 (571)
101 2ell_A Acidic leucine-rich nuc 99.8 2.5E-18 8.6E-23 112.1 11.2 134 9-142 22-163 (168)
102 1jl5_A Outer protein YOPM; leu 99.8 2.7E-17 9.2E-22 122.9 17.7 155 11-181 91-245 (454)
103 4ay9_X Follicle-stimulating ho 99.8 4.3E-18 1.5E-22 123.3 11.4 174 5-178 48-231 (350)
104 1jl5_A Outer protein YOPM; leu 99.8 7.5E-17 2.6E-21 120.5 17.8 121 12-141 132-252 (454)
105 1w8a_A SLIT protein; signaling 99.8 4.8E-18 1.6E-22 113.2 9.4 125 14-140 11-140 (192)
106 1a9n_A U2A', U2A'; complex (nu 99.7 3.6E-18 1.2E-22 112.2 7.4 134 7-140 15-154 (176)
107 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-16 4.6E-21 123.0 16.6 154 11-181 121-292 (622)
108 2wfh_A SLIT homolog 2 protein 99.7 1.3E-16 4.4E-21 106.3 13.3 124 14-139 13-139 (193)
109 2o6r_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 102.5 15.0 126 13-140 9-138 (177)
110 2je0_A Acidic leucine-rich nuc 99.7 2.1E-17 7.2E-22 105.6 7.5 125 9-134 15-148 (149)
111 2o6r_A Variable lymphocyte rec 99.7 7.5E-16 2.6E-20 101.2 14.9 130 35-165 8-140 (177)
112 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-15 3.8E-20 117.9 17.5 140 12-164 41-196 (622)
113 3goz_A Leucine-rich repeat-con 99.7 3E-18 1E-22 124.6 3.0 176 5-181 44-261 (362)
114 1w8a_A SLIT protein; signaling 99.7 5.8E-16 2E-20 103.0 13.5 127 36-164 10-141 (192)
115 2wfh_A SLIT homolog 2 protein 99.7 1E-15 3.5E-20 101.9 14.7 126 37-164 13-141 (193)
116 1dce_A Protein (RAB geranylger 99.7 5.9E-19 2E-23 134.9 -2.0 121 57-180 442-567 (567)
117 2ca6_A RAN GTPase-activating p 99.7 8.7E-19 3E-23 128.4 -2.2 125 56-180 159-310 (386)
118 2ast_B S-phase kinase-associat 99.7 1.3E-18 4.5E-23 125.1 -1.9 172 9-181 91-280 (336)
119 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4.2E-21 104.1 7.5 131 33-165 23-163 (168)
120 3goz_A Leucine-rich repeat-con 99.7 2.1E-18 7.3E-23 125.4 -1.2 179 3-181 14-233 (362)
121 2ast_B S-phase kinase-associat 99.7 2.1E-18 7.1E-23 124.1 -1.4 169 11-180 70-254 (336)
122 1a9n_A U2A', U2A'; complex (nu 99.7 1E-16 3.4E-21 105.3 6.0 133 29-163 14-154 (176)
123 2ca6_A RAN GTPase-activating p 99.7 4.3E-18 1.5E-22 124.8 -1.6 150 32-181 92-282 (386)
124 4fdw_A Leucine rich hypothetic 99.6 7.4E-15 2.5E-19 108.0 15.0 169 5-180 174-352 (401)
125 4b8c_D Glucose-repressible alc 99.6 3.8E-17 1.3E-21 128.3 2.4 112 28-141 218-331 (727)
126 2je0_A Acidic leucine-rich nuc 99.6 2.3E-16 7.8E-21 100.8 5.1 123 56-180 17-147 (149)
127 4b8c_D Glucose-repressible alc 99.6 1.4E-16 4.9E-21 125.1 4.1 115 3-119 216-331 (727)
128 3g39_A Variable lymphocyte rec 99.6 2E-14 7E-19 93.7 12.2 106 12-119 10-117 (170)
129 3sb4_A Hypothetical leucine ri 99.6 1.4E-14 4.9E-19 104.0 12.0 100 55-156 225-328 (329)
130 2r9u_A Variable lymphocyte rec 99.6 3.4E-14 1.2E-18 93.0 12.2 105 13-119 14-120 (174)
131 1z7x_W Ribonuclease inhibitor; 99.6 5.9E-17 2E-21 121.1 -2.0 135 6-140 23-184 (461)
132 1z7x_W Ribonuclease inhibitor; 99.6 5.6E-17 1.9E-21 121.2 -3.3 127 55-181 255-406 (461)
133 4fdw_A Leucine rich hypothetic 99.5 2.4E-13 8.4E-18 100.0 14.8 145 30-180 176-330 (401)
134 1ds9_A Outer arm dynein; leuci 99.5 2E-18 7E-23 115.5 -11.7 131 8-141 15-155 (198)
135 1dce_A Protein (RAB geranylger 99.5 4.7E-14 1.6E-18 108.0 10.2 151 3-156 401-567 (567)
136 3g39_A Variable lymphocyte rec 99.5 2.7E-13 9.3E-18 88.4 12.1 105 35-141 10-117 (170)
137 2r9u_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 87.9 12.1 104 36-141 14-120 (174)
138 1ds9_A Outer arm dynein; leuci 99.5 4.4E-17 1.5E-21 108.9 -9.1 126 51-179 43-180 (198)
139 2ifg_A High affinity nerve gro 99.4 1.4E-12 4.9E-17 94.1 10.4 103 14-118 11-117 (347)
140 2ifg_A High affinity nerve gro 99.3 5.2E-12 1.8E-16 91.2 9.7 103 37-140 11-117 (347)
141 3un9_A NLR family member X1; l 99.3 1.1E-14 3.9E-19 106.1 -4.8 159 10-169 71-259 (372)
142 3ogk_B Coronatine-insensitive 99.3 4.3E-13 1.5E-17 103.1 1.1 135 4-140 157-307 (592)
143 3ogk_B Coronatine-insensitive 99.2 5.4E-13 1.9E-17 102.6 -1.1 89 4-93 185-306 (592)
144 4fs7_A Uncharacterized protein 99.2 9E-10 3.1E-14 80.9 13.6 172 5-181 156-374 (394)
145 3un9_A NLR family member X1; l 99.2 7.6E-13 2.6E-17 96.4 -3.2 151 10-161 100-282 (372)
146 2p1m_B Transport inhibitor res 99.1 1.5E-12 5.2E-17 100.1 -2.2 33 149-181 289-322 (594)
147 2p1m_B Transport inhibitor res 99.1 7.7E-13 2.6E-17 101.7 -7.2 57 125-181 455-514 (594)
148 4h09_A Hypothetical leucine ri 99.0 1.7E-08 5.9E-13 73.6 14.4 138 32-174 215-357 (379)
149 4h09_A Hypothetical leucine ri 99.0 7.3E-09 2.5E-13 75.6 12.1 163 6-176 212-379 (379)
150 2ra8_A Uncharacterized protein 99.0 3.4E-10 1.2E-14 82.1 4.1 158 5-163 133-321 (362)
151 4gt6_A Cell surface protein; l 99.0 2.7E-08 9.4E-13 73.0 13.9 57 122-180 307-364 (394)
152 4gt6_A Cell surface protein; l 99.0 4.1E-08 1.4E-12 72.1 14.7 122 52-180 261-385 (394)
153 4fs7_A Uncharacterized protein 98.9 2.8E-08 9.5E-13 73.0 11.6 141 30-178 249-393 (394)
154 1io0_A Tropomodulin; LRR prote 98.7 8.6E-10 2.9E-14 72.7 -0.5 111 30-141 32-166 (185)
155 2ra8_A Uncharacterized protein 98.7 6.8E-09 2.3E-13 75.3 2.0 154 3-160 164-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.6 4.8E-09 1.6E-13 69.1 -1.1 112 51-163 31-165 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.5E-07 5E-12 65.3 4.0 61 9-69 168-233 (267)
158 3rw6_A Nuclear RNA export fact 98.3 4E-07 1.4E-11 63.2 3.3 78 102-179 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 1.6E-07 5.4E-12 60.9 0.7 84 80-163 61-154 (176)
160 3e4g_A ATP synthase subunit S, 98.2 3.5E-07 1.2E-11 59.3 2.0 32 35-66 62-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 9.3E-05 3.2E-09 48.9 2.0 106 31-137 38-168 (197)
162 3rfe_A Platelet glycoprotein I 97.2 0.00077 2.6E-08 41.4 5.7 36 81-116 32-67 (130)
163 3rfe_A Platelet glycoprotein I 97.2 0.00045 1.5E-08 42.5 4.5 56 107-163 11-69 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00034 1.2E-08 46.1 2.8 112 3-115 33-168 (197)
165 2lz0_A Uncharacterized protein 92.3 0.95 3.3E-05 26.1 6.9 39 50-89 14-52 (100)
166 2lz0_A Uncharacterized protein 91.3 1.2 4.3E-05 25.6 6.8 47 20-67 5-54 (100)
No 1
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-24 Score=151.69 Aligned_cols=171 Identities=29% Similarity=0.368 Sum_probs=149.7
Q ss_pred CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+.++.|++++|.+..++ ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+..+++..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 46899999999998877 5788899999999999998887 44678999999999999999888887888999999999
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
.+|.++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++++...+.. ++|++|++++|.++.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 9999998888777788999999999999988764 778899999999999999988776654 8999999999999998
Q ss_pred CCCCcCCCcceeEEEEE
Q psy13911 165 DPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 165 ~~~~~~~~~~l~~l~l~ 181 (183)
++..+..+++|+.|+++
T Consensus 197 ~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CTTTTTTCTTCCEEECC
T ss_pred CHHHhccccCCCEEEec
Confidence 88889999999998874
No 2
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.5e-24 Score=152.03 Aligned_cols=174 Identities=26% Similarity=0.332 Sum_probs=149.2
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
...++.++.+++.++.+..++. +..+++|+.|++++|.+.....+..+++|++|++++|.++.+++..+..+++|++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3467789999999998887654 677899999999999988887788899999999999999988887788899999999
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH 163 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~ 163 (183)
+++|.++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++++...+.. ++|++|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999998888776688999999999999888764 678889999999999999887766554 889999999999999
Q ss_pred eCCCCcCCCcceeEEEEE
Q psy13911 164 VDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 164 ~~~~~~~~~~~l~~l~l~ 181 (183)
+++..+..+++|+.|+++
T Consensus 196 ~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp CCTTTTTTCTTCCEEECC
T ss_pred cCHHHHhCCcCCCEEEcc
Confidence 888888999999988874
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.8e-25 Score=155.52 Aligned_cols=174 Identities=21% Similarity=0.278 Sum_probs=89.9
Q ss_pred hhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCC-CCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 7 LQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNA-LTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
+..+++|++|++++|.+..+ +..+..+++|+.|++++|. +... ..+..+++|++|++++|.+...++..+..+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 44555555555555555544 3444555555555555554 4444 334455555555555555555544445555555
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCC
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n 159 (183)
+++++++|.++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.++++.+..+.. ++|++|++++|
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 555555555555554434345555555555555554432 444555555555555555554433332 55555555555
Q ss_pred CceeeCCCCcCCCcceeEEEE
Q psy13911 160 PRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~l~l 180 (183)
.++++++..+..+++|+.|++
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEEC
T ss_pred cCCcCCHHHcccCcccCEEec
Confidence 555554445555555555554
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=162.28 Aligned_cols=176 Identities=25% Similarity=0.307 Sum_probs=125.6
Q ss_pred HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
..|..+++|+.|++++|.+..++ ..|.++++|+.|++++|+++.+ ..+..+++|+.|++++|.+..+++..+..+++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 45677788888888888887765 6677788888888888887777 35777888888888888887777766777777
Q ss_pred CcEEEecC-CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCC
Q psy13911 82 MEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159 (183)
Q Consensus 82 L~~l~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n 159 (183)
|++|++.+ +.+..++...+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++++.+..+.. ++|++|++++|
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 77777776 45556666555567777777777777777776667777777777777777665555443 56666666666
Q ss_pred CceeeCCCCcCCCcceeEEEE
Q psy13911 160 PRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~l~l 180 (183)
.++++.+..|.++++|+.|+|
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEEC
T ss_pred ceeEEChhhhcCCCCCCEEEC
Confidence 666666666666666666654
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.6e-24 Score=161.81 Aligned_cols=177 Identities=21% Similarity=0.265 Sum_probs=120.9
Q ss_pred HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
..|+.+++|+.|++++|.+..++ ..+.++++|+.|++++|.++.+ ..+..+++|++|++++|.+..+++..+..+++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence 45667777777777777777655 5667777777777777777766 34667777777777777777766666666777
Q ss_pred CcEEEecC-CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCC
Q psy13911 82 MEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159 (183)
Q Consensus 82 L~~l~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n 159 (183)
|+.|++++ +.++.++...+..+++|+.|++++|.++++|.+..+++|+.|++++|.++++.+..+.. ++|++|++++|
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 77777766 45556666555567777777777777777776666777777777777776665544443 56666666666
Q ss_pred CceeeCCCCcCCCcceeEEEEE
Q psy13911 160 PRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
.++++.+..|.++++|+.|+|+
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECC
T ss_pred cCceECHHHhcCCCCCCEEECC
Confidence 6666666666666666666553
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=7.1e-24 Score=147.01 Aligned_cols=169 Identities=24% Similarity=0.297 Sum_probs=139.6
Q ss_pred CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS 88 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 88 (183)
...+.+++.++.+..+|..+. +.++.|++++|.+... ..+..+++|++|++++|.++.+++..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456788888888888886553 6788899998888887 467888889999999888888887778888889999999
Q ss_pred CCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeC
Q psy13911 89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~ 165 (183)
+|.++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++++...+.. ++|++|++++|.+++++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 998888887776688889999999988888763 677888999999999888887765554 88889999999888888
Q ss_pred CCCcCCCcceeEEEEE
Q psy13911 166 PNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 166 ~~~~~~~~~l~~l~l~ 181 (183)
+..+..+++|+.|+++
T Consensus 172 ~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 172 HGAFDRLGKLQTITLF 187 (251)
T ss_dssp TTTTTTCTTCCEEECC
T ss_pred HHHHhCCCCCCEEEee
Confidence 8888888888888764
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=7.2e-24 Score=149.50 Aligned_cols=172 Identities=22% Similarity=0.281 Sum_probs=155.4
Q ss_pred CCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcc-ccccCcccccCCCCCcEE
Q psy13911 10 SSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA-ITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 10 ~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l 85 (183)
.+.++.|++++|.+..++ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|. +..+++..+..+++|+++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 568999999999999977 6788999999999999999887 578899999999999997 888877779999999999
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCce
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRL 162 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~ 162 (183)
++.+|.++.++...+..+++|++|++++|.+++++. +..+++|+.|++++|.+++++...+.. ++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 999999998877767689999999999999998763 788899999999999999988776655 89999999999999
Q ss_pred eeCCCCcCCCcceeEEEEE
Q psy13911 163 HVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 163 ~~~~~~~~~~~~l~~l~l~ 181 (183)
+..+..+.++++|+.|+++
T Consensus 191 ~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp EECTTTTTTCTTCCEEECC
T ss_pred ccCHhHccCcccccEeeCC
Confidence 9999999999999999875
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.6e-24 Score=155.66 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=92.2
Q ss_pred HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCccccc-------
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCIS------- 77 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~------- 77 (183)
.+..+++|++|++++|.+..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+....+..+.
T Consensus 99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 34455666666666666666665556666666666666665544 3455555566665555433322222122
Q ss_pred --CCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCC-CCccE
Q psy13911 78 --AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQY 153 (183)
Q Consensus 78 --~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~ 153 (183)
.+++|++|++++|.++.+|..+. .+++|++|++++|.++++| .+..+++|+.|++++|.+.+..+..+.. ++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 25555555555555555544433 4555666666665555544 3445555555555555444433333322 55555
Q ss_pred EEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 154 LDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 154 l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
|++++|.+.+..|..+.++++|+.|+|
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeC
Confidence 555555555555555555555555554
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8e-23 Score=143.14 Aligned_cols=168 Identities=24% Similarity=0.314 Sum_probs=152.2
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
..+.++++++.++.+|..+. +.++.|++++|.+..+ ..+..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 47899999999999986553 6899999999999988 4689999999999999999999888888999999999999
Q ss_pred CcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCC
Q psy13911 90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDP 166 (183)
Q Consensus 90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~ 166 (183)
|.++.++...+..+++|+.|++++|.++.++. +..+++|++|++++|.+++++...+.. ++|++|++++|.++.+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99999998877789999999999999998763 788999999999999999988776654 999999999999999988
Q ss_pred CCcCCCcceeEEEEE
Q psy13911 167 NHFKSYRSYVRVYIQ 181 (183)
Q Consensus 167 ~~~~~~~~l~~l~l~ 181 (183)
..|.++++|+.|+++
T Consensus 175 ~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 175 GAFDKLTELKTLKLD 189 (270)
T ss_dssp TTTTTCTTCCEEECC
T ss_pred hHhccCCCcCEEECC
Confidence 899999999999875
No 10
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.3e-24 Score=148.83 Aligned_cols=170 Identities=25% Similarity=0.255 Sum_probs=102.7
Q ss_pred CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911 12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS 88 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 88 (183)
.+++|++++|.+..++ ..+..+++|+.|++++|+++.+ ..+..+++|++|++++|.+...++..+..+++|+++++.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 4566666666665554 3455556666666666655554 245555666666666666655555555555566666666
Q ss_pred CCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCccc---------------------------
Q psy13911 89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHL--------------------------- 138 (183)
Q Consensus 89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l--------------------------- 138 (183)
+|.+..++...+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 655555554334455555666665555554 22 244445555555555544
Q ss_pred -ccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 139 -ERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 139 -~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++++...+...++++|++++|.++++++..+..+++|+.|+++
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 4444444444578889999999888877888889999988875
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=4.8e-23 Score=153.43 Aligned_cols=176 Identities=18% Similarity=0.246 Sum_probs=157.7
Q ss_pred HHHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAW 79 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~ 79 (183)
+..|..+++|++|++++|.+..++ ..+..+++|+.|++++|.++.+ ..+..+++|+.|++.+ +.+..+++..+..+
T Consensus 105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 357889999999999999999988 5788999999999999999988 5688999999999998 56777777789999
Q ss_pred CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEc
Q psy13911 80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV 156 (183)
Q Consensus 80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l 156 (183)
++|++|++++|.++.+|. + ..+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++...+.. ++|++|++
T Consensus 185 ~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPN-L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp SSCCEEECTTSCCSSCCC-C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred cccCeecCCCCcCccccc-c-CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 999999999999998875 3 37899999999999999863 5888999999999999999998877765 89999999
Q ss_pred CCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 157 SGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 157 ~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++|.++.+++..|..+++|+.|+|+
T Consensus 263 ~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 263 AHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp TTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred CCCCCCccChhHhccccCCCEEEcC
Confidence 9999999999999999999999875
No 12
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.4e-23 Score=144.50 Aligned_cols=169 Identities=12% Similarity=0.206 Sum_probs=134.5
Q ss_pred CCCcEEEccCCcCCCcc-ccccccccccEEEccCCC-CCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCCCCCcEE
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNA-LTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l 85 (183)
+.++.|++++|.+..++ ..+..+++|+.|++++|. ++.+ .+|..+++|+.|++++ |.++.+++..+..+++|+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 36888888888888877 467788888888888886 7776 3677888888888887 88888877778888888888
Q ss_pred EecCCcCccCCCCCCCCCCCcc---EEEeeCC-cCCCCCC--ccCCCccc-EEeccCcccccccCCCCCCCCccEEEcCC
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLR---VLRLHSN-HLTSCPT--LYLSSSLR-VLDLSYNHLERLNLNTLIPKQLQYLDVSG 158 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~--~~~~~~L~-~l~l~~n~l~~~~~~~~~~~~l~~l~l~~ 158 (183)
++.+|.++.+|. +..+++|+ .+++++| .+++++. +..+++|+ .+++++|.++.++...+..+++++|++++
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 888888888776 33667777 8888888 8877653 77778888 88888888888777666667888888888
Q ss_pred CC-ceeeCCCCcCCC-cceeEEEEE
Q psy13911 159 NP-RLHVDPNHFKSY-RSYVRVYIQ 181 (183)
Q Consensus 159 n~-~~~~~~~~~~~~-~~l~~l~l~ 181 (183)
|+ ++.+++..|.++ ++|+.|+++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECT
T ss_pred CCCcccCCHHHhhccccCCcEEECC
Confidence 85 888878888888 888888764
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1e-22 Score=143.93 Aligned_cols=167 Identities=25% Similarity=0.260 Sum_probs=91.2
Q ss_pred CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
.++.|++++|.+..++ ..+..+++|+.|++++|.++.+.....+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN 110 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCch-hhccCCCCCEEECCCC
Confidence 4455555555554432 3445555555555555555555333455556666666665554443 2455556666666666
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCC
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPN 167 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~ 167 (183)
.++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++...+.. ++|++|++++|.++.+ |.
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~ 189 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PK 189 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Ch
Confidence 6665555544455666666666666655542 445556666666666666655544432 5666666666666654 33
Q ss_pred CcCCCcceeEEEE
Q psy13911 168 HFKSYRSYVRVYI 180 (183)
Q Consensus 168 ~~~~~~~l~~l~l 180 (183)
.+..+..|+.+++
T Consensus 190 ~~~~~~~L~~l~L 202 (290)
T 1p9a_G 190 GFFGSHLLPFAFL 202 (290)
T ss_dssp TTTTTCCCSEEEC
T ss_pred hhcccccCCeEEe
Confidence 3334445555554
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.8e-22 Score=140.53 Aligned_cols=160 Identities=28% Similarity=0.333 Sum_probs=142.9
Q ss_pred HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 83 (183)
.++.+++|+.|++++|.+..++ .+..+++|+.|++++|.++.. ..+..+++|++|++++|.+..+++..+..+++|+
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 4778999999999999999875 677899999999999999988 4478999999999999999999888889999999
Q ss_pred EEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCC
Q psy13911 84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160 (183)
Q Consensus 84 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~ 160 (183)
++++++|.++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++++...+.. ++|++|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 99999999999988877689999999999999998764 788899999999999999988766554 899999999999
Q ss_pred ceeeCC
Q psy13911 161 RLHVDP 166 (183)
Q Consensus 161 ~~~~~~ 166 (183)
+.+..+
T Consensus 217 ~~~~~~ 222 (272)
T 3rfs_A 217 WDCTCP 222 (272)
T ss_dssp BCCCTT
T ss_pred ccccCc
Confidence 876533
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.1e-22 Score=138.79 Aligned_cols=154 Identities=27% Similarity=0.368 Sum_probs=140.1
Q ss_pred CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+.++.|++++|.+..++ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.++.+++..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 57999999999999876 5788999999999999999988 45889999999999999999999888899999999999
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
++|.++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++++...+.. ++|++|++++|++.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999998877789999999999999998863 788899999999999999988766655 8999999999998765
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1e-22 Score=145.16 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=135.6
Q ss_pred HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
.++.+++|+.|++++|.+..++. +..+++|+.|++++|.++....+..+++|+.|++++|.++.+++ +..+++|+++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 134 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL 134 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEE
Confidence 46678888888888888887776 77788888888888888877777788888888888888887654 7788888888
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~ 165 (183)
++++|.++.++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|++|++++|.+++..
T Consensus 135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred ECCCCccCcCcc--ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence 888888887765 33678888999998888887767888889999999998888764 222388999999999998875
Q ss_pred CCCcCCCcceeEEEEE
Q psy13911 166 PNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 166 ~~~~~~~~~l~~l~l~ 181 (183)
.+..+++|+.|+++
T Consensus 212 --~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 212 --PLANTSNLFIVTLT 225 (308)
T ss_dssp --GGTTCTTCCEEEEE
T ss_pred --cccCCCCCCEEEcc
Confidence 37889999988875
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4.2e-23 Score=146.91 Aligned_cols=175 Identities=22% Similarity=0.230 Sum_probs=128.6
Q ss_pred HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
.+..+++|++|++++|.+..++..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 33445666666666666666665566777777777777777665 246777888888888888877776667778888
Q ss_pred cEEEecCCcCcc--CCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911 83 EELVLSGNGISS--LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS 157 (183)
Q Consensus 83 ~~l~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~ 157 (183)
+++++++|.+.. .+..+ ..+++|+.|++++|.+++.+ .+..+++|+.|++++|.+++++...+.. ++|++|+++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CEEECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CEEECCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 888888887764 44443 37788888888888887753 4677788888888888888876655544 788888888
Q ss_pred CCCceeeCCCCcCCCc-ceeEEEEE
Q psy13911 158 GNPRLHVDPNHFKSYR-SYVRVYIQ 181 (183)
Q Consensus 158 ~n~~~~~~~~~~~~~~-~l~~l~l~ 181 (183)
+|.+++..+..+..++ +|+.|+++
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCCCcccCHHHHHhhhccCCEEEcc
Confidence 8888888888888874 78888763
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1e-22 Score=152.09 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=157.1
Q ss_pred HHHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCC-ccccccCcccccCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY-NAITSLPDNCISAW 79 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~ 79 (183)
+..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++ +.+..++...+..+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 356889999999999999999987 5588899999999999999987 5688999999999998 67777887789999
Q ss_pred CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEc
Q psy13911 80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV 156 (183)
Q Consensus 80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l 156 (183)
++|+.|++++|.++.++. + ..+++|+.|++++|.+++++ .+..+++|+.|++++|.++++....+.. ++|++|++
T Consensus 196 ~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPN-L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp TTCCEEECTTSCCSSCCC-C-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccccccc-c-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 999999999999998864 3 37899999999999999864 4888899999999999999988777765 89999999
Q ss_pred CCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 157 SGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 157 ~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++|.++.+++..+..+++|+.|+++
T Consensus 274 ~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 274 AHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred CCCcCCccChHHhccccCCCEEEcc
Confidence 9999999989999999999999875
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4.1e-22 Score=140.85 Aligned_cols=159 Identities=29% Similarity=0.335 Sum_probs=144.8
Q ss_pred HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
+..+..+++|+.|++++|.+..++.. ..+++|+.|++++|+++.+ ..+..+++|+.|++++|.++.+++..+..+++|
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred HHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 45688999999999999999988765 6889999999999999988 567889999999999999999998889999999
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 160 (183)
++|++++|.++.++...+..+++|+.|++++|.++++|. +..+++|+.|++++|.++.++...+...+++.+++++|+
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 999999999999999887789999999999999999874 678899999999999999998777767899999999999
Q ss_pred cee
Q psy13911 161 RLH 163 (183)
Q Consensus 161 ~~~ 163 (183)
+.+
T Consensus 207 ~~C 209 (290)
T 1p9a_G 207 WLC 209 (290)
T ss_dssp BCC
T ss_pred ccC
Confidence 876
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=2.2e-23 Score=148.39 Aligned_cols=175 Identities=21% Similarity=0.238 Sum_probs=110.0
Q ss_pred hhcCCCCcEEEccCCcCCCc---cccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCc-ccccCCCC
Q psy13911 7 LQNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPD-NCISAWSE 81 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~ 81 (183)
++.+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+...++ ..+..+++
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 34445555555555544432 23333445555555555554444 335556667777777666665554 44666677
Q ss_pred CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcC
Q psy13911 82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVS 157 (183)
Q Consensus 82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~ 157 (183)
|+++++++|.+...+...+..+++|++|++++|.+++ .| .+..+++|++|++++|.++++++..+.. ++|++|+++
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 7777777777766555555566777777777777664 33 4666677777777777777765555544 777788888
Q ss_pred CCCceeeCCCCcCCCcceeEEEEE
Q psy13911 158 GNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 158 ~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+|.++++++..+..+++|+.|+++
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCccCccChhhccCcccCCEeECC
Confidence 887777766677777777777764
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.3e-23 Score=148.82 Aligned_cols=177 Identities=23% Similarity=0.259 Sum_probs=97.9
Q ss_pred HHHhhcCCCCcEEEccC-CcCC-CccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911 4 ELFLQNSSKLKVLNISK-NCLK-MLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW 79 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 79 (183)
+..++.++.|++|++++ |.+. .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 34455555555555552 4444 2444555555555555555555422 334445555555555555553333334445
Q ss_pred CCCcEEEecCCcCc-cCCCCCCCCCC-C-----------------------ccEEEeeCCcCCCCC--CccCCCcccEEe
Q psy13911 80 SEMEELVLSGNGIS-SLPNTIPQSWP-H-----------------------LRVLRLHSNHLTSCP--TLYLSSSLRVLD 132 (183)
Q Consensus 80 ~~L~~l~l~~~~l~-~~~~~~~~~~~-~-----------------------L~~L~l~~~~~~~~~--~~~~~~~L~~l~ 132 (183)
++|+++++++|.++ .+|..+. .++ + |+.|++++|.+++.. .+..+++|+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 55555555555444 3333222 222 4 444444444444321 255566777777
Q ss_pred ccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 133 LSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 133 l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+++|.+++..+.....++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 228 L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred CCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 7777776554443333778888888888887778888888888888764
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=152.19 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=32.6
Q ss_pred ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 122 LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 122 ~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
+..+++|+.|++++|.+++++...+.. ++|++|++++|.++++.+..|.++++|+.|++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 334455555555555555554444333 55556666666655555556666666665555
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=7.3e-23 Score=147.05 Aligned_cols=177 Identities=21% Similarity=0.242 Sum_probs=151.1
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCC---------CCCCCCCEEeeCCcccccc
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPL---------NKCRQLNTLHVAYNAITSL 71 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~---------~~l~~L~~l~l~~~~~~~~ 71 (183)
++..++.+++|++|++++|.+..+|..+..+++|+.|++++|.+.+. ..+ ..+++|+.|++++|.++.+
T Consensus 119 lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l 198 (328)
T 4fcg_A 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198 (328)
T ss_dssp CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC
T ss_pred hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc
Confidence 45668899999999999999999999999999999999999775544 333 3489999999999999976
Q ss_pred CcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-
Q psy13911 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP- 148 (183)
Q Consensus 72 ~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~- 148 (183)
+.. +..+++|++|++++|.++.++..+. .+++|+.|++++|.+.+ +| .++.+++|+.|++++|.+.+..+..+..
T Consensus 199 p~~-l~~l~~L~~L~L~~N~l~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 199 PAS-IANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CGG-GGGCTTCCEEEEESSCCCCCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred hHh-hcCCCCCCEEEccCCCCCcCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 654 8899999999999999999887654 88999999999987765 45 4888999999999998776655544443
Q ss_pred CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 149 KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 149 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++|++|++++|++.+..|..+.++++++.+++.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 899999999999999889999999999988764
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=149.94 Aligned_cols=171 Identities=23% Similarity=0.238 Sum_probs=119.8
Q ss_pred CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+.++.|++++|.+..++ ..|..+++|+.|++++|.++.. .+|.++++|++|++++|.++.+++..+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46677777777777654 5677777777777777777666 45677777777777777777777666677777777777
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
++|.+..++...+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++...+.. ++|+.|++++|.+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 777777666555556777777777777776543 4666677777777777777665444433 6777777777777777
Q ss_pred CCCCcCCCcceeEEEEE
Q psy13911 165 DPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 165 ~~~~~~~~~~l~~l~l~ 181 (183)
.+..|..+++|+.|+++
T Consensus 192 ~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CTTCSCSCTTCCEEEEE
T ss_pred ChhhcccCcccceeeCC
Confidence 66677777777776664
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-21 Score=143.97 Aligned_cols=115 Identities=22% Similarity=0.304 Sum_probs=86.1
Q ss_pred HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
.++..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+..+++..+..+++
T Consensus 63 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 44677788888888888877765 4677788888888888887776 44677788888888888887777766677778
Q ss_pred CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911 82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119 (183)
Q Consensus 82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 119 (183)
|+++++++|.++.++...+..+++|+.|++++|.++++
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 88888888877777666555677777777777776643
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=6.3e-22 Score=138.95 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=133.8
Q ss_pred EEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911 15 VLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92 (183)
Q Consensus 15 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 92 (183)
.++..+..+..+|..+. ++++.|++++|.++.. ..+.++++|++|++++|.+..+++..+..+++|+++++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 46666777788886553 6799999999999988 4788999999999999999998888899999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCccccccc-CCCCCC-CCccEEEcCCCCceeeCCCC
Q psy13911 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLN-LNTLIP-KQLQYLDVSGNPRLHVDPNH 168 (183)
Q Consensus 93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~-~~~~~~-~~l~~l~l~~n~~~~~~~~~ 168 (183)
+.++...+..+++|++|++++|.+++++ .+..+++|++|++++|.++++. +..+.. ++|++|++++|.++++.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 9888776668999999999999999875 3888899999999999998854 333333 88999999999888877666
Q ss_pred cCCCccee
Q psy13911 169 FKSYRSYV 176 (183)
Q Consensus 169 ~~~~~~l~ 176 (183)
+..++.++
T Consensus 169 ~~~l~~L~ 176 (276)
T 2z62_A 169 LRVLHQMP 176 (276)
T ss_dssp GHHHHTCT
T ss_pred hhhhhhcc
Confidence 66555554
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.4e-22 Score=141.92 Aligned_cols=173 Identities=25% Similarity=0.322 Sum_probs=82.5
Q ss_pred HhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911 6 FLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE 84 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 84 (183)
.++.+++|++|++++|.+..+ |..+..+++|+.|++++|.++.++.- -.++|+.|++++|.+..+++..+..+++|++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-hcccccEEECCCCcccccCHhHhcCCccccE
Confidence 455666666666666666654 45566666666666666665544110 0134444444444444443333444444444
Q ss_pred EEecCCcCcc--CCCCCCCCCCC---------------------ccEEEeeCCcCCCCC--CccCCCcccEEeccCcccc
Q psy13911 85 LVLSGNGISS--LPNTIPQSWPH---------------------LRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLE 139 (183)
Q Consensus 85 l~l~~~~l~~--~~~~~~~~~~~---------------------L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~ 139 (183)
+++++|.+.. .....+..+++ |+.|++++|.+++++ .+..+++|+.|++++|.++
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 4444444431 22222223334 444444444444331 2444445555555555555
Q ss_pred cccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 140 RLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 140 ~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
+++...+.. ++|++|++++|.++.+ |..+..+++|+.|++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l 270 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYL 270 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEEC
T ss_pred eeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEEC
Confidence 544333322 4555555555555533 334555555555554
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.5e-21 Score=150.34 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=88.1
Q ss_pred HHHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
+.++..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+... ..+.++++|++|++++|.+..+++..+..++
T Consensus 68 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 345677888888888888888765 4777788888888888887777 3467788888888888888877777677788
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 119 (183)
+|++|++++|.++.+++..+..+++|+.|++++|.++++
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 888888888888777766555777788888777776653
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=8.7e-23 Score=145.79 Aligned_cols=174 Identities=20% Similarity=0.152 Sum_probs=117.0
Q ss_pred HHhhcCCCCcEEEccCCcCC-CccccccccccccEEEccCCCCCCC--CCCCCCC-CCCEEeeCCccccccCcccccCCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDI--GPLNKCR-QLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++. ..+..++ +|+.|++++|.+....+..+..+.
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 34455555555555555554 2444555555555555555555422 3344454 566666666655544444455554
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC-CCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCC
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG 158 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~ 158 (183)
|+.+++++|.++..+...+..+++|+.|++++|.+++. +.+..+++|++|++++|.+++..+..+.. ++|++|++++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 66777777766655555556889999999999998864 45777899999999999998655555544 8999999999
Q ss_pred CCceeeCCCCcCCCcceeEEEE
Q psy13911 159 NPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 159 n~~~~~~~~~~~~~~~l~~l~l 180 (183)
|++++..|.. ..+++|+.+++
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGT
T ss_pred CcccccCCCC-ccccccChHHh
Confidence 9999877776 77888876654
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.9e-21 Score=145.26 Aligned_cols=124 Identities=26% Similarity=0.367 Sum_probs=82.3
Q ss_pred CCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccC
Q psy13911 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSY 135 (183)
Q Consensus 58 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~ 135 (183)
|+.+++++|.+....+..+..+++|+++++++|.++.++...+..+++|+.|++++|.+++++ .+..+++|+.|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 444444444444444444566667777777777777665555556777777777777776653 356667777777777
Q ss_pred cccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 136 NHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 136 n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
|.++++++..+.. ++|++|++++|.++++++..+..+++|+.|+++
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 7777765555544 777778887777777777777777777777764
No 31
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=6.4e-22 Score=136.18 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=145.5
Q ss_pred HHhhcCCCCcEEEccCCc-CCCcc-ccccccccccEEEccC-CCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911 5 LFLQNSSKLKVLNISKNC-LKMLP-SLNNENRYLEKLYLTS-NALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW 79 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~-~~~~~-~~~~~~~~L~~L~l~~-~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 79 (183)
..++.+++|+.|++++|. +..++ ..+..+++|+.|++++ |.++.+ ..|.++++|+.|++++|.++.++. +..+
T Consensus 49 ~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l 126 (239)
T 2xwt_C 49 HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKV 126 (239)
T ss_dssp TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTC
T ss_pred HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccc
Confidence 468899999999999997 98887 5788999999999998 999887 468899999999999999998765 7788
Q ss_pred CCCc---EEEecCC-cCccCCCCCCCCCCCcc-EEEeeCCcCCCCCC--ccCCCcccEEeccCcc-cccccCCCCCC--C
Q psy13911 80 SEME---ELVLSGN-GISSLPNTIPQSWPHLR-VLRLHSNHLTSCPT--LYLSSSLRVLDLSYNH-LERLNLNTLIP--K 149 (183)
Q Consensus 80 ~~L~---~l~l~~~-~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~-l~~~~~~~~~~--~ 149 (183)
++++ ++++++| .++.++...+..+++|+ .+++++|.++.+|. +.. ++|+.+++++|. +++++...+.. +
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 8888 9999999 99999988777899999 99999999998763 344 799999999994 99988777654 6
Q ss_pred CccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 150 QLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 150 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
++++|++++|+++.+++..+.+ |+.|++
T Consensus 206 ~L~~L~l~~N~l~~l~~~~~~~---L~~L~l 233 (239)
T 2xwt_C 206 GPSLLDVSQTSVTALPSKGLEH---LKELIA 233 (239)
T ss_dssp CCSEEECTTCCCCCCCCTTCTT---CSEEEC
T ss_pred CCcEEECCCCccccCChhHhcc---Cceeec
Confidence 8999999999999887765554 455544
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-21 Score=143.93 Aligned_cols=133 Identities=28% Similarity=0.404 Sum_probs=119.5
Q ss_pred cCCCCcEEEccCCcCCCccc-cccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911 9 NSSKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
.+++++.+++.++.+..+|. .+..+++|+.|++++|.++.. ..+..+++|++|++++|.+..+++..+..+++|+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46889999999999999884 478899999999999999887 578999999999999999999988889999999999
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccc
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~ 141 (183)
++++|.++.++...+..+++|++|++++|.+++++ .+..+++|+.|++++|.++++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 99999999999887768999999999999998875 377888999999998887764
No 33
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=1.2e-21 Score=138.51 Aligned_cols=167 Identities=22% Similarity=0.277 Sum_probs=139.4
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
++.++.|+.|++.++.+..++. +..+++|+.|++++|+++....+..+++|+.|++++|.++.++. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEE
Confidence 3467789999999999888864 67789999999999999888558889999999999999887654 78889999999
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP 166 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 166 (183)
+++|.++.++. + ..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|++|++++|.+++++
T Consensus 119 L~~n~i~~~~~-l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~- 194 (291)
T 1h6t_A 119 LEHNGISDING-L-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR- 194 (291)
T ss_dssp CTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred CCCCcCCCChh-h-cCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh-
Confidence 99999887742 3 3688999999999999888778888999999999999988765 222388999999999998863
Q ss_pred CCcCCCcceeEEEEE
Q psy13911 167 NHFKSYRSYVRVYIQ 181 (183)
Q Consensus 167 ~~~~~~~~l~~l~l~ 181 (183)
.+..+++|+.|+++
T Consensus 195 -~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 195 -ALAGLKNLDVLELF 208 (291)
T ss_dssp -GGTTCTTCSEEEEE
T ss_pred -hhccCCCCCEEECc
Confidence 48889999988875
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=8.2e-22 Score=140.46 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=146.8
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
.+.+++|+.|++.++.+..++ .+..+++|+.|++++|.+.....+..+++|+.|++++|.+..++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEE
Confidence 346789999999999999887 57889999999999999999866899999999999999998865 388899999999
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP 166 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 166 (183)
+++|.++.++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|++|++++|.++++++
T Consensus 114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCCchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 99999998765 34889999999999999998878899999999999999998765 2223899999999999998754
Q ss_pred CCcCCCcceeEEEEE
Q psy13911 167 NHFKSYRSYVRVYIQ 181 (183)
Q Consensus 167 ~~~~~~~~l~~l~l~ 181 (183)
+..+++|+.|+++
T Consensus 191 --l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 191 --LASLPNLIEVHLK 203 (308)
T ss_dssp --GGGCTTCCEEECT
T ss_pred --hcCCCCCCEEEcc
Confidence 8889999999874
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=2e-22 Score=143.90 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=114.1
Q ss_pred hcCCCCcEEEccCCcCCCcccccccc-----ccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcccccc---Ccc-cc
Q psy13911 8 QNSSKLKVLNISKNCLKMLPSLNNEN-----RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSL---PDN-CI 76 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~---~~~-~~ 76 (183)
+.+++|++|++++|.+.++|..+..+ ++|++|++++|++... ..+..+++|++|++++|.+.+. +.. .+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 55666666666666666655545444 6666666666666665 4566677777777777765431 111 12
Q ss_pred cCCCCCcEEEecCCcCccC---CCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCCCCCC
Q psy13911 77 SAWSEMEELVLSGNGISSL---PNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQ 150 (183)
Q Consensus 77 ~~~~~L~~l~l~~~~l~~~---~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~ 150 (183)
..+++|+++++++|.++.+ +...+..+++|+.|++++|.+++.+ .+..+++|++|++++|.++.++.... ++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 5667777777777777632 2233235577888888888887643 34556788888888888887765443 78
Q ss_pred ccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 151 LQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 151 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
|++|++++|++++. |. +..+++|+.|+++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLK 304 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence 88999999988887 44 8888999888874
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=5.7e-21 Score=129.90 Aligned_cols=149 Identities=21% Similarity=0.380 Sum_probs=133.0
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
+.++..++.+..+|..+. +.++.|++++|+++.+ ..+..+++|+.|++++|.++.+.+..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678999999999986553 7899999999999988 478899999999999999999888889999999999999999
Q ss_pred CccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
++.++...+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++...+.. +++++|++++|++.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 99999988778999999999999999874 4888899999999999999998776665 8999999999998763
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.5e-21 Score=140.43 Aligned_cols=175 Identities=22% Similarity=0.275 Sum_probs=102.1
Q ss_pred HHhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCc
Q psy13911 5 LFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 83 (183)
..++.+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..++... .++|++|++++|.+..+++..+..+++|+
T Consensus 72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCC
Confidence 3466667777777777766665 455666677777777777666552211 15666666666666666665566667777
Q ss_pred EEEecCCcCcc--CCCCCCCCC--------------------CCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccc
Q psy13911 84 ELVLSGNGISS--LPNTIPQSW--------------------PHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLE 139 (183)
Q Consensus 84 ~l~l~~~~l~~--~~~~~~~~~--------------------~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~ 139 (183)
++++.+|.++. .....+..+ ++|++|++++|.+++.+ .+..+++|+.|++++|.++
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 77777666642 222222122 24444455555444433 2555566666666666666
Q ss_pred cccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 140 RLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 140 ~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+++...+.. ++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLH 272 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECC
T ss_pred cCChhHhhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECC
Confidence 655444333 6666666666666644 4446666666666653
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=144.81 Aligned_cols=169 Identities=20% Similarity=0.237 Sum_probs=91.3
Q ss_pred CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911 12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS 88 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 88 (183)
++++|++++|.+..++ ..+..+++|+.|++++|.++.. ..+.++++|++|++++|.++.+++..+..+++|++++++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 5566666666665554 2455566666666666655554 335555666666666666655555545555666666666
Q ss_pred CCcCccCCC-CCCCCCCCccEEEeeCC-cCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911 89 GNGISSLPN-TIPQSWPHLRVLRLHSN-HLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH 163 (183)
Q Consensus 89 ~~~l~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~ 163 (183)
+|.++.++. ..+..+++|+.|++++| .++.++ .+..+++|+++++++|.+++..+..+.. ++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 666655554 33445556666666655 344432 3455555666666666555554443333 455555555555544
Q ss_pred eCCCCcCCCcceeEEEE
Q psy13911 164 VDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 164 ~~~~~~~~~~~l~~l~l 180 (183)
++...+..+++|+.|++
T Consensus 213 ~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 213 LLEIFVDVTSSVECLEL 229 (353)
T ss_dssp HHHHHHHHTTTEEEEEE
T ss_pred chhhhhhhcccccEEEC
Confidence 33333334455555544
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=1.2e-20 Score=129.12 Aligned_cols=150 Identities=22% Similarity=0.280 Sum_probs=132.4
Q ss_pred CcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
.+.++.+++.+..+|..+. ++|+.|++++|.++.+ ..+..+++|+.|++++|.+..+++..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4678899999999986543 8899999999999988 56888999999999999999988888889999999999999
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
.++.++...+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.++...+.. ++|+.|++.+|++.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999998887778999999999999999887 5788899999999999999988766654 8999999999998764
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=8.6e-21 Score=136.34 Aligned_cols=177 Identities=23% Similarity=0.284 Sum_probs=144.5
Q ss_pred HHHhhcCCCCcEEEccCCcCCC---ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKM---LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
+..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+..++.. -.++|+.|++++|.++...+..+..++
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccCHHHhcCCC
Confidence 3457788888888888888763 346677888889999988888877321 127899999999999888777788999
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCC-------CCcc
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-------KQLQ 152 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-------~~l~ 152 (183)
+|+.+++++|.++.++...+..+++|+.|++++|.++.+| .+..+++|+++++++|.+++++...+.. ..++
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 9999999999999887765557899999999999999887 4778889999999999999988776643 5788
Q ss_pred EEEcCCCCcee--eCCCCcCCCcceeEEEEE
Q psy13911 153 YLDVSGNPRLH--VDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 153 ~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~ 181 (183)
.+++.+|++.. +.+..|..++.++.++++
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred ceEeecCcccccccCccccccccceeEEEec
Confidence 99999999864 667788889999988874
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=4.6e-21 Score=143.13 Aligned_cols=89 Identities=21% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCC----CCCCCCCCCCEEeeCCccccccCccc-ccC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI----GPLNKCRQLNTLHVAYNAITSLPDNC-ISA 78 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~ 78 (183)
..++.+++|++|++++|.+..+ |..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....+.. +..
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 3456666677777776666654 45566666677777776666652 22566666666666666666554433 555
Q ss_pred CCCCcEEEecCCcCc
Q psy13911 79 WSEMEELVLSGNGIS 93 (183)
Q Consensus 79 ~~~L~~l~l~~~~l~ 93 (183)
+++|+++++++|.+.
T Consensus 153 l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 153 MRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCCEEECTTCCBS
T ss_pred CCcccEEeCCCCccc
Confidence 666666666665544
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4.8e-21 Score=149.48 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=107.3
Q ss_pred HHhhcCCCCcEEEccCCcCCC-cc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcccc--ccCcccccC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKM-LP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAIT--SLPDNCISA 78 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~ 78 (183)
.+++.+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+... ..+..+++|+.|++.+|.+. ...+..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 345556666666666666543 33 4455566666666666655443 34455555555555555544 223344566
Q ss_pred CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC----------CccCCCcccEEeccCcccccccCCCCCC
Q psy13911 79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----------TLYLSSSLRVLDLSYNHLERLNLNTLIP 148 (183)
Q Consensus 79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------~~~~~~~L~~l~l~~n~l~~~~~~~~~~ 148 (183)
+++|+.+++++|.++.++...+..+++|+.|++++|.+++++ .+..+++|+.|++++|.++.++...+..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 666777777777776666655556667777777777665431 1455666777777777777666555444
Q ss_pred -CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 149 -KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 149 -~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
++|++|++++|.++.+++..|.++++|+.|++
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence 66777777777777766666677777776665
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.9e-21 Score=140.01 Aligned_cols=172 Identities=20% Similarity=0.290 Sum_probs=152.1
Q ss_pred hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911 8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
..|+.....+.+++.++.+|..+. ++++.|++++|+++.+ ..+..+++|+.|++++|.++.+++..+..+++|+++
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 456777778999999999997553 5899999999999988 468999999999999999999888889999999999
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC---ccCCCcccEEeccCc-ccccccCCCCCC-CCccEEEcCCCC
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT---LYLSSSLRVLDLSYN-HLERLNLNTLIP-KQLQYLDVSGNP 160 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~l~l~~n-~l~~~~~~~~~~-~~l~~l~l~~n~ 160 (183)
++++|.++.++...+..+++|++|++++|.++.++. +..+++|++|++++| .++.++...+.. ++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999999887755588999999999999998764 778899999999998 588877666654 899999999999
Q ss_pred ceeeCCCCcCCCcceeEEEEE
Q psy13911 161 RLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 161 ~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+++..+..+..+++|+.|+++
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEE
T ss_pred cCccCHHHHhccccCCeecCC
Confidence 999999999999999999986
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=3.6e-22 Score=142.86 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=78.6
Q ss_pred CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCC-CCCCCccEEEeeCCcCCCCCCccCCCcccEEeccC
Q psy13911 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSY 135 (183)
Q Consensus 57 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~ 135 (183)
+|+.|++++|.++.+++..+..+++|+++++++|.++.++...+ ..+++|++|++++|.+++++....+++|+.|++++
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC
Confidence 34444444444444444445556666666666666665433222 24566777777777776665555567778888888
Q ss_pred cccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 136 NHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 136 n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
|.+++++......++|++|++++|.++.+ |..+..+++|+.++++
T Consensus 201 N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLR 245 (317)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECT
T ss_pred CcCCcchhhhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEcc
Confidence 87777765533337788888888888876 5567778888887764
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4.9e-21 Score=147.62 Aligned_cols=175 Identities=22% Similarity=0.258 Sum_probs=100.9
Q ss_pred HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcccc-ccCcccccCCCCC
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAIT-SLPDNCISAWSEM 82 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~L 82 (183)
.++.+++|+.|++++|.+..+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+. .+++..+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 46677788888888887777777777777777777777777665 35556666666666666554 3344445555666
Q ss_pred cEEEecCCcCccCC--CCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCC-CCC-CCccEEEc
Q psy13911 83 EELVLSGNGISSLP--NTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNT-LIP-KQLQYLDV 156 (183)
Q Consensus 83 ~~l~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~-~~~-~~l~~l~l 156 (183)
+++++++|.+...+ ...+..+++|++|++++|.+.+.+ .+..+++|+.+++++|.+++..... +.. ++|++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 66666666555442 222225555666666555554432 2444555555555555554433222 211 45555555
Q ss_pred CCCCceeeCCCCcCCCcceeEEEE
Q psy13911 157 SGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 157 ~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
++|.+++..+..+.++++|+.|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCccCCcCHHHHhCCCCCCEEEC
Confidence 555555554555555555555544
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.2e-21 Score=147.88 Aligned_cols=173 Identities=27% Similarity=0.373 Sum_probs=145.0
Q ss_pred cCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911 9 NSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
.+++++.+++.++.+..+| ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+..+++..+..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4578899999999999988 4578899999999999999988 478999999999999999999998888999999999
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCC-----------------
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTL----------------- 146 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~----------------- 146 (183)
++++|.++.+|...+..+++|+.|++++|.+++++ .++.+++|+.|++++|.+++++...+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 99999999999988778999999999999999875 47888899999999988776532211
Q ss_pred ------------------------------------------C-CCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 147 ------------------------------------------I-PKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 147 ------------------------------------------~-~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
. .++|++|++++|.+++..|..|.++++|+.|+|+
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 1 1566777777777777777777777777777663
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.1e-21 Score=151.20 Aligned_cols=177 Identities=17% Similarity=0.155 Sum_probs=127.5
Q ss_pred HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
+..+..++.|+.|++++|.+..+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 4556677777777777777777777777777788888887776665 3566777888888888877776666677778
Q ss_pred CCcEEEecCCcCcc-CCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEc
Q psy13911 81 EMEELVLSGNGISS-LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV 156 (183)
Q Consensus 81 ~L~~l~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l 156 (183)
+|+++++++|.+.. ..+..+..+++|+.|++++|.+++.+ .+..+++|+.|++++|.+++..+..+.. ++|++|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 88888888887775 22333347788888888888777653 3677778888888888887776555554 77888888
Q ss_pred CCCCceeeCCCCcCCCc-ceeEEEEE
Q psy13911 157 SGNPRLHVDPNHFKSYR-SYVRVYIQ 181 (183)
Q Consensus 157 ~~n~~~~~~~~~~~~~~-~l~~l~l~ 181 (183)
++|.++.+++. +..++ +|+.++++
T Consensus 529 ~~N~l~~~p~~-~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 529 SFNRIETSKGI-LQHFPKSLAFFNLT 553 (606)
T ss_dssp TTSCCCCEESC-GGGSCTTCCEEECC
T ss_pred CCCcCcccCHh-HhhhcccCcEEEcc
Confidence 88888766444 76765 47777764
No 48
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=3.7e-21 Score=152.00 Aligned_cols=178 Identities=19% Similarity=0.161 Sum_probs=119.2
Q ss_pred HHHhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+.+..+..+..++
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 3445555666666666665553 455566666666666666666544 3455666777777777766655555566677
Q ss_pred CCcEEEecCCcCc-cCCCCC------------------------------------------------------------
Q psy13911 81 EMEELVLSGNGIS-SLPNTI------------------------------------------------------------ 99 (183)
Q Consensus 81 ~L~~l~l~~~~l~-~~~~~~------------------------------------------------------------ 99 (183)
+|+.+++++|.+. .+|..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 7777777776554 222211
Q ss_pred ---------CCCCCCccEEEeeCCcCCC-CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCC
Q psy13911 100 ---------PQSWPHLRVLRLHSNHLTS-CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPN 167 (183)
Q Consensus 100 ---------~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~ 167 (183)
+..+++|+.|++++|.+++ +| .++.++.|+.|++++|.+++..+..+.. ++|++|++++|.+++..|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 1134567778888887775 44 4777888888888888888655555544 8888888888888888888
Q ss_pred CcCCCcceeEEEEE
Q psy13911 168 HFKSYRSYVRVYIQ 181 (183)
Q Consensus 168 ~~~~~~~l~~l~l~ 181 (183)
.+.+++.|+.|+++
T Consensus 699 ~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 699 AMSALTMLTEIDLS 712 (768)
T ss_dssp GGGGCCCCSEEECC
T ss_pred HHhCCCCCCEEECc
Confidence 88888888888875
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=3.8e-21 Score=138.30 Aligned_cols=176 Identities=24% Similarity=0.263 Sum_probs=136.9
Q ss_pred HHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccc--cCcccccCC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS--LPDNCISAW 79 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~ 79 (183)
+..++.+++|++|++++|.+..+|..+. ++|++|++++|.+... ..+..+++|+.|++++|.++. ..+..+..+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 5678889999999999999988875543 7888888888888777 346778888888888777752 333323322
Q ss_pred --------------------CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcc
Q psy13911 80 --------------------SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNH 137 (183)
Q Consensus 80 --------------------~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~ 137 (183)
++|+++++++|.++.++...+..+++|+.|++++|.+++++ .+..+++|+.|++++|.
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 46777777777777777655668899999999999999876 37888999999999999
Q ss_pred cccccCCCCCCCCccEEEcCCCCceeeCCCCcCCC------cceeEEEEE
Q psy13911 138 LERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSY------RSYVRVYIQ 181 (183)
Q Consensus 138 l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~------~~l~~l~l~ 181 (183)
++.++......++|++|++++|+++++++..|..+ ..|+.++++
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence 99887654444899999999999999988888664 557777653
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.1e-21 Score=140.36 Aligned_cols=167 Identities=25% Similarity=0.302 Sum_probs=88.3
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC----------------------CCCCCCCCEEeeC
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP----------------------LNKCRQLNTLHVA 64 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------~~~l~~L~~l~l~ 64 (183)
+..+++|+++++.+|.+..++. +..+++|+.|++++|.+..... +..+++|+.|+++
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG 229 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence 4555556666666555555443 4455555555555555554433 4444555555555
Q ss_pred CccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCC
Q psy13911 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLN 144 (183)
Q Consensus 65 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 144 (183)
+|.++..++ +..+++|+++++++|.++.++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++.+..
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred CCccCCCcc--hhcCCCCCEEECCCCccCCChh--HhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh
Confidence 555544433 4455555555555555554421 124555555555555555555455555566666666655554433
Q ss_pred CCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 145 TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 145 ~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
.+.. ++|++|++++|++++..+ +..+++|+.+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 3322 556666666666655544 555566665554
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=3.8e-21 Score=149.09 Aligned_cols=178 Identities=20% Similarity=0.297 Sum_probs=134.8
Q ss_pred HHHhhcCCC-CcEEEccCCcCCCccccccccc--cccEEEccCCCCCCC--CCCC-------CCCCCCEEeeCCcccccc
Q psy13911 4 ELFLQNSSK-LKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALTDI--GPLN-------KCRQLNTLHVAYNAITSL 71 (183)
Q Consensus 4 ~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~--~~~~-------~l~~L~~l~l~~~~~~~~ 71 (183)
+..+..++. |+.|++++|.+..+|..+.... +|+.|++++|.+.+. ..+. .+++|+.|++++|.++.+
T Consensus 369 p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence 445677777 8888888888888887666544 788888888887765 3344 567888888888888887
Q ss_pred CcccccCCCCCcEEEecCCcCccCCCCCCCCCC-------CccEEEeeCCcCCCCCC-cc--CCCcccEEeccCcccccc
Q psy13911 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWP-------HLRVLRLHSNHLTSCPT-LY--LSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 72 ~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~-~~--~~~~L~~l~l~~n~l~~~ 141 (183)
+...+..+++|+.+++++|.++.+|...+.... +|+.|++++|.++.+|. +. .+++|+.|++++|.++++
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i 528 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc
Confidence 777677788888888888888888776653332 78888888888887764 43 778888888888888886
Q ss_pred cCCCCCCCCccEEEc------CCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 142 NLNTLIPKQLQYLDV------SGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 142 ~~~~~~~~~l~~l~l------~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+......++|++|++ ++|.+.+..|..+.++++|+.|+++
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 544444478888888 4566677777888888888888764
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.8e-20 Score=146.24 Aligned_cols=136 Identities=26% Similarity=0.360 Sum_probs=92.2
Q ss_pred HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
..++++++|+.|++++|.+..++ ..+..+++|+.|++++|.++.+ ..|.++++|++|++++|.+..+++..+..+++
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 45677777777777777777653 5667777777888877777776 34777777888888777777777666777777
Q ss_pred CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC----ccCCCcccEEeccCccccc
Q psy13911 82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT----LYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~l~l~~n~l~~ 140 (183)
|+++++++|.++..+...+..+++|++|++++|.+++.+. ...+++|+.|++++|.+++
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 7888877777776655544467777777777776665431 1223455555555554443
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.4e-20 Score=145.14 Aligned_cols=170 Identities=24% Similarity=0.266 Sum_probs=147.3
Q ss_pred CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+.++.|++++|.+.+++ ..+.++++|+.|++++|.++.+ .+|.++++|++|++++|.++..++..+..+++|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999999876 5889999999999999999887 56889999999999999999988888999999999999
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CC----ccEEEcCCC
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQ----LQYLDVSGN 159 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~----l~~l~l~~n 159 (183)
++|.+..++...+..+++|++|++++|.+++ +| .++.+++|++|++++|.++++++..+.. .+ +.++++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998886656689999999999999885 45 4888999999999999999887665543 22 458999999
Q ss_pred CceeeCCCCcCCCcceeEEEEE
Q psy13911 160 PRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
.++.+++..+... +|+.++++
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLR 212 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEE
T ss_pred CcceeCcccccCc-eeeeeecc
Confidence 9999988888766 88888875
No 54
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.86 E-value=1.7e-21 Score=135.92 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=103.9
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|+++....+..+++|+.|++++|.++.++.. .. ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc--cc-CcccEEE
Confidence 456677777777777777766 5666777777777777777774477777777777777777765542 22 6777777
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
+++|.++.++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.++++ ..+.. ++|+.|++++|++++.
T Consensus 113 L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCccCCChh--hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 77777776642 236777777777777777776666777777777777777776 22222 6777777777777655
No 55
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=4.7e-21 Score=151.41 Aligned_cols=175 Identities=26% Similarity=0.283 Sum_probs=101.7
Q ss_pred HhhcCCCCcEEEccCCcCCC-ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 6 FLQNSSKLKVLNISKNCLKM-LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
.++.+++|+.|++.+|.+.+ +|..+..+++|+.|++++|++.+. ..+.++++|+.|++++|.+....+..+..+++|
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 34444455555555554442 344455555555555555555543 335555666666666666665545555666666
Q ss_pred cEEEecCCcCc-cCCCCCCCCCCCccEEEeeCCcCCC-CC----------------------------------------
Q psy13911 83 EELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-CP---------------------------------------- 120 (183)
Q Consensus 83 ~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~---------------------------------------- 120 (183)
+.+++++|.+. .+|..+ ..+++|+.|++++|.+++ +|
T Consensus 517 ~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 66666666665 333333 256666666666665542 12
Q ss_pred -------------------------------CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCC
Q psy13911 121 -------------------------------TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNH 168 (183)
Q Consensus 121 -------------------------------~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~ 168 (183)
.++.+++++.+++++|.+++..+..+.. +.|+.|++++|.+++..|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 0122345667777777776554444433 77778888888887777777
Q ss_pred cCCCcceeEEEEE
Q psy13911 169 FKSYRSYVRVYIQ 181 (183)
Q Consensus 169 ~~~~~~l~~l~l~ 181 (183)
+.+++.|+.|+|+
T Consensus 676 l~~L~~L~~LdLs 688 (768)
T 3rgz_A 676 VGDLRGLNILDLS 688 (768)
T ss_dssp GGGCTTCCEEECC
T ss_pred HhCCCCCCEEECC
Confidence 8888888877764
No 56
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.86 E-value=2.2e-21 Score=129.87 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=103.8
Q ss_pred hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+.++.|+.|+++++.+..++ .+..+++|+.|++++|.+.....+..+++|+.|++++|.++...+..+..+++|+++++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45567777777777777766 56677777778877776666666677777777777777777644445777777777777
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCc-CCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCcee
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~ 163 (183)
++|.++......+..+++|++|++++|. ++.++.+..+++|+.|++++|.+++++ .....++|++|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 7777765222222366777777777776 666666777777777777777777754 11122677777777776643
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4.4e-21 Score=138.66 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=124.8
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCc-------------
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPD------------- 73 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~------------- 73 (183)
+..+++|+.+++++|........+..+++|+.|++++|.+.....+..+++|+.+++++|.+..+++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 7889999999999996555444588899999999999999888668889999999999998876553
Q ss_pred -------ccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCC
Q psy13911 74 -------NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL 146 (183)
Q Consensus 74 -------~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 146 (183)
..+..+++|+++++++|.++.++. +..+++|++|++++|.+++++.+..+++|+.+++++|.+++++. ..
T Consensus 208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~ 284 (347)
T 4fmz_A 208 VNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV-LN 284 (347)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred cCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChh-hc
Confidence 003344556666666666655544 23566777777777776666666667777777777777776531 11
Q ss_pred CCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 147 IPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 147 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
..+++++|++++|.+++..+..+.++++|+.|+++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 22777888888887777767777777888777764
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2e-21 Score=146.28 Aligned_cols=169 Identities=23% Similarity=0.202 Sum_probs=101.1
Q ss_pred CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCc------------------------
Q psy13911 12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN------------------------ 66 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~------------------------ 66 (183)
+|+.|++++|.+..++ ..+..+++|+.|++++|.+.+..++..+++|+.|++++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence 5666666666666544 455666666666666666554433444444544444444
Q ss_pred ----------------cccccCcccccCCCCCcEEEecCCcCccCCCCCC-CCCCCccEEEeeCCcCCCCCCccCCCccc
Q psy13911 67 ----------------AITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTLYLSSSLR 129 (183)
Q Consensus 67 ----------------~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~ 129 (183)
.++..++..+..+++|++|++++|.++..+...+ ..+++|+.|++++|.+++++....+++|+
T Consensus 115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~ 194 (487)
T 3oja_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK 194 (487)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCC
T ss_pred CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCC
Confidence 4444434445555666666666666654333222 24566666666666666665555566777
Q ss_pred EEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 130 VLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 130 ~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
.|++++|.++++++.....++|+.|++++|.++++ |..+..+++|+.++++
T Consensus 195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLR 245 (487)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECT
T ss_pred EEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcC
Confidence 77777777777655533337777777777777775 4456777777777653
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=2.3e-20 Score=144.22 Aligned_cols=168 Identities=27% Similarity=0.266 Sum_probs=131.0
Q ss_pred CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911 12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS 88 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 88 (183)
.+++|++++|.++.++ ..|.++++|+.|++++|+++.+ .+|.++++|++|++++|.++.+++..|..+++|++|++.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 6888899888888876 5788888899999998888887 568888889999998888888888888888889999998
Q ss_pred CCcCccCCCCCCCCCCCccEEEeeCCcCCCC--C-CccCCCcccEEeccCcccccccCCCCCC-----CCccEEEcCCCC
Q psy13911 89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSC--P-TLYLSSSLRVLDLSYNHLERLNLNTLIP-----KQLQYLDVSGNP 160 (183)
Q Consensus 89 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-----~~l~~l~l~~n~ 160 (183)
+|.++.++...+..+++|++|++++|.++++ | .++.++.|++|++++|.++++....+.. .....++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 8888888877776888889999988888764 3 3567788888898888888776554432 334567888888
Q ss_pred ceeeCCCCcCCCcceeEEEE
Q psy13911 161 RLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 161 ~~~~~~~~~~~~~~l~~l~l 180 (183)
+..+.+..+... .+..+++
T Consensus 213 l~~i~~~~~~~~-~~~~l~l 231 (635)
T 4g8a_A 213 MNFIQPGAFKEI-RLHKLTL 231 (635)
T ss_dssp CCEECTTTTTTC-EEEEEEE
T ss_pred ccccCcccccch-hhhhhhh
Confidence 888776666544 3344443
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=2.3e-20 Score=126.93 Aligned_cols=149 Identities=23% Similarity=0.339 Sum_probs=128.2
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
+.++++++.++.+|..+ ...++.|++++|.++.. ..+..+++|+.|++++|.++.+++..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 58899999999988655 34568999999999887 34788999999999999999988878999999999999999
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
.++.++...+..+++|++|++++|.+++++ .+..+++|+.|++++|.++++++..+.. ++|++|++++|++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999888876668899999999999999873 4788899999999999999987766665 8899999999998764
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=7.5e-21 Score=146.62 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=71.2
Q ss_pred HhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 6 FLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
.|+.+++|++|++++|.+..+ |..|..+++|++|++++|++... ..+.++++|++|++++|.++.+.+..+..+++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 455556666666666655554 34555566666666666655544 345555666666666666555544445555666
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCccc--EEeccCccccc
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLR--VLDLSYNHLER 140 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~--~l~l~~n~l~~ 140 (183)
+++++++|.+..++...+..+++|+.|++++|.+++++ .++.+++++ .+++++|.+++
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 66666666555543221113555666666665555432 133334444 44444444433
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.9e-20 Score=143.32 Aligned_cols=170 Identities=27% Similarity=0.284 Sum_probs=148.8
Q ss_pred CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+.++.|++++|.+..++ ..+..+++|+.|++++|+++.+ .+|.++++|++|++++|.++.+++..+..+++|+++++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47899999999999876 6789999999999999999887 56889999999999999999988888999999999999
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CCc----cEEEcCCC
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQL----QYLDVSGN 159 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l----~~l~l~~n 159 (183)
.+|.++.++...+..+++|++|++++|.+++ +| .++.+++|+.|++++|.+++++...+.. .++ ..+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999999887666689999999999999886 35 4888999999999999998876655443 555 78999999
Q ss_pred CceeeCCCCcCCCcceeEEEEE
Q psy13911 160 PRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
.++++.+..+..+ +|+.++++
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~ 208 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLR 208 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecc
Confidence 9999999888877 78888764
No 63
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=8.2e-21 Score=128.04 Aligned_cols=148 Identities=25% Similarity=0.316 Sum_probs=91.7
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
+.++..++.+..+|..+ .++++.|++++|+++.+ ..+..+++|++|++++|.++.+++..+..+++|+++++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45566666666665433 34666666666666655 235566666666666666666666555666666666666666
Q ss_pred CccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911 92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH 163 (183)
Q Consensus 92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~ 163 (183)
++.++...+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++++...+.. +++++|++++|++.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 666665554466666666666666666542 555666666666666666665544433 666666666665544
No 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.5e-19 Score=121.79 Aligned_cols=158 Identities=30% Similarity=0.393 Sum_probs=136.7
Q ss_pred CCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 10 SSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 10 ~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
.+.+++|++++|.+..++ ..+..+++|+.|++++|+++.+ ..+..+++|++|++++|.++.+++..+..+++|++++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 457999999999999887 5578899999999999999988 4478899999999999999998888788999999999
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceee
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV 164 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 164 (183)
+++|.++.++...+..+++|+.|++++|.+++++. +..+++|+.+++++|.+... .++++.|++..|.+++.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCce
Confidence 99999999988877689999999999999998763 77889999999999976542 26788888888888877
Q ss_pred CCCCcCCCc
Q psy13911 165 DPNHFKSYR 173 (183)
Q Consensus 165 ~~~~~~~~~ 173 (183)
.|..++.++
T Consensus 181 ip~~~~~l~ 189 (208)
T 2o6s_A 181 VRNSAGSVA 189 (208)
T ss_dssp BBCTTSSBC
T ss_pred eeccCcccc
Confidence 777666554
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2.5e-21 Score=150.07 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=95.4
Q ss_pred HHHHhhcCCCCcEEEccCCcCCC------------------cccccc--ccccccEEEccCCCCCCC--CCCCCCCCCCE
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKM------------------LPSLNN--ENRYLEKLYLTSNALTDI--GPLNKCRQLNT 60 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~ 60 (183)
++..++++++|++|++++|.+++ +|..+. .+++|+.|++++|.+.+. ..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45678889999999999998888 888877 888999999998887665 56778888888
Q ss_pred EeeCCcc-ccc-cCcccccCC------CCCcEEEecCCcCccCCC--CCCCCCCCccEEEeeCCcCC-CCCCccCCCccc
Q psy13911 61 LHVAYNA-ITS-LPDNCISAW------SEMEELVLSGNGISSLPN--TIPQSWPHLRVLRLHSNHLT-SCPTLYLSSSLR 129 (183)
Q Consensus 61 l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~ 129 (183)
|++++|. ++. ..+..+..+ ++|+++++++|.++.+|. .+. .+++|+.|++++|.++ .+|.++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT-TCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc-cCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 8888887 664 223334443 677777777777776665 333 6666777777777666 444444444555
Q ss_pred EEeccCcccccc
Q psy13911 130 VLDLSYNHLERL 141 (183)
Q Consensus 130 ~l~l~~n~l~~~ 141 (183)
.|++++|.++.+
T Consensus 357 ~L~L~~N~l~~l 368 (636)
T 4eco_A 357 SLNLAYNQITEI 368 (636)
T ss_dssp EEECCSSEEEEC
T ss_pred EEECCCCccccc
Confidence 555555544433
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=5.1e-21 Score=151.97 Aligned_cols=176 Identities=16% Similarity=0.174 Sum_probs=112.8
Q ss_pred HHHHhhcCCCCcEEEccCCcCCC------------------cccccc--ccccccEEEccCCCCCCC--CCCCCCCCCCE
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKM------------------LPSLNN--ENRYLEKLYLTSNALTDI--GPLNKCRQLNT 60 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~ 60 (183)
+|..++++++|+.|++++|.+.+ +|..+. .+++|+.|++++|.+.+. ..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55677888888888888888887 777665 788888888888876555 45677777777
Q ss_pred EeeCCcc-ccc-cCccccc-------CCCCCcEEEecCCcCccCCC--CCCCCCCCccEEEeeCCcCCCCCCccCCCccc
Q psy13911 61 LHVAYNA-ITS-LPDNCIS-------AWSEMEELVLSGNGISSLPN--TIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLR 129 (183)
Q Consensus 61 l~l~~~~-~~~-~~~~~~~-------~~~~L~~l~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~ 129 (183)
|++++|. ++. ..|..+. .+++|++|++++|.++.+|. .+. .+++|+.|++++|.++.+|.++.+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~-~L~~L~~L~Ls~N~l~~lp~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ-KMVKLGLLDCVHNKVRHLEAFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT-TCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh-cCCCCCEEECCCCCcccchhhcCCCcce
Confidence 7777776 654 2222233 23367777777777776665 333 6667777777777666666666666777
Q ss_pred EEeccCcccccccCCCCCCCC-ccEEEcCCCCceeeCCCCcCCCcc--eeEEEE
Q psy13911 130 VLDLSYNHLERLNLNTLIPKQ-LQYLDVSGNPRLHVDPNHFKSYRS--YVRVYI 180 (183)
Q Consensus 130 ~l~l~~n~l~~~~~~~~~~~~-l~~l~l~~n~~~~~~~~~~~~~~~--l~~l~l 180 (183)
.|++++|.++.++......++ |++|++++|.++.+ |..+..++. |+.|++
T Consensus 599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEEC
T ss_pred EEECcCCccccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEEC
Confidence 777777766654433222245 66666666666643 444444322 555544
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=7.5e-21 Score=145.54 Aligned_cols=174 Identities=21% Similarity=0.264 Sum_probs=132.8
Q ss_pred hcCCCCcEEEccCCcCCCc---cccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCc-ccccCCCCC
Q psy13911 8 QNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPD-NCISAWSEM 82 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L 82 (183)
..+++|+.|++++|.+... +..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+...++ ..+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4567778888887777754 45566778888888888877666 337778888888888888776544 457778888
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC--CC-CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCC
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--CP-TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG 158 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~ 158 (183)
+++++++|.+.......+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++++.+..+.. ++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 888888888877666655578888888888887762 44 4777788888888888888876665554 7888888888
Q ss_pred CCceeeCCCCcCCCcceeEEEEE
Q psy13911 159 NPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 159 n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
|.++++++..+.++++|+.++++
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcCCCCCHHHhhcccCCcEEEec
Confidence 88888877888888888888764
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2.9e-20 Score=141.78 Aligned_cols=167 Identities=25% Similarity=0.321 Sum_probs=107.5
Q ss_pred hcCCCCcEEEccCCcCCC-cc---ccccccccccEEEccCCCCCCCC----CCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911 8 QNSSKLKVLNISKNCLKM-LP---SLNNENRYLEKLYLTSNALTDIG----PLNKCRQLNTLHVAYNAITSLPDNCISAW 79 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 79 (183)
+.+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|+++... .+..+++|+.|++++|.++.++.. +..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hccc
Confidence 345555555555555554 11 22444555555555555555441 244555666666666655544432 4455
Q ss_pred CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCC
Q psy13911 80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159 (183)
Q Consensus 80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n 159 (183)
++|+++++++|.++.++..+. ++|+.|++++|.+++.+ ..+++|++|++++|.++.++.. ...++|++|++++|
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~-~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRN 483 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTSC---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCG-GGCTTCCEEECCSS
T ss_pred ccccEEECCCCCcccccchhc---CCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCc-ccCccCCEEecCCC
Confidence 556666666666555544332 45666666666666543 4678899999999999987653 23489999999999
Q ss_pred CceeeCCCCcCCCcceeEEEEE
Q psy13911 160 PRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
.+++.++..+..+++|+.++++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECC
T ss_pred ccCCcCHHHHhcCcccCEEEec
Confidence 9999988899999999999874
No 69
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=1.5e-20 Score=144.52 Aligned_cols=152 Identities=23% Similarity=0.316 Sum_probs=78.3
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
++.+++|+.|++++|.+..++. +..+++|+.|++++|.+.....+..+++|+.|++++|.+..++. +..+++|+.|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~ 137 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY 137 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEE
Confidence 4455555555555555555444 44555555555555555555555555555555555555554321 44555555555
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceee
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV 164 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 164 (183)
+++|.++.++ .+ ..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|+.|++++|++.+.
T Consensus 138 Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 138 LGNNKITDIT-VL-SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCG-GG-GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCSEEEECC
T ss_pred CCCCccCCch-hh-cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccCCcCcCC
Confidence 5555555441 11 2455555555555555554335555555555555555555421 11125555555555555544
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1e-20 Score=146.21 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=138.5
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
..++..+.+++.+|..+ .++++.|++++|+++.+ .+|.++++|++|++++|.++.+++++|..+++|++|++++|.
T Consensus 34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 35666777888898665 35799999999999998 579999999999999999999999889999999999999999
Q ss_pred CccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCC-C-CCCccEEEcCCCCceeeCCC
Q psy13911 92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTL-I-PKQLQYLDVSGNPRLHVDPN 167 (183)
Q Consensus 92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~-~-~~~l~~l~l~~n~~~~~~~~ 167 (183)
++.++..++..+++|++|++++|.+++++ .++.+++|++|++++|.++.+..... . .++|++|++++|.++++.+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 99999888779999999999999999986 48899999999999999987654332 2 28999999999999999887
Q ss_pred CcCCCcce
Q psy13911 168 HFKSYRSY 175 (183)
Q Consensus 168 ~~~~~~~l 175 (183)
.+..++.+
T Consensus 192 ~l~~L~~l 199 (635)
T 4g8a_A 192 DLRVLHQM 199 (635)
T ss_dssp GGHHHHTC
T ss_pred cccchhhh
Confidence 77655443
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.6e-20 Score=132.78 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=135.6
Q ss_pred HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
.++.+++|+.|++++|.+..++. +..+++|+.|++++|.++....+..+++|+.|++++|.+..++ .+..+++|+.+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L 139 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESL 139 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEE
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEE
Confidence 37789999999999999999887 8899999999999999999877899999999999999999863 38889999999
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~ 165 (183)
++++|.++.++ . +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++++. ....++|+.|++++|++++.+
T Consensus 140 ~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 140 YLGNNKITDIT-V-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ECCSSCCCCCG-G-GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred EccCCcCCcch-h-hccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 99999998873 3 33789999999999999988778889999999999999999753 222389999999999887654
Q ss_pred C
Q psy13911 166 P 166 (183)
Q Consensus 166 ~ 166 (183)
.
T Consensus 217 ~ 217 (291)
T 1h6t_A 217 I 217 (291)
T ss_dssp E
T ss_pred c
Confidence 3
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=3.9e-20 Score=146.95 Aligned_cols=176 Identities=22% Similarity=0.292 Sum_probs=121.3
Q ss_pred HhhcCCC-CcEEEccCCcCCCcccccccccc--ccEEEccCCCCCCC-CCCC------CCCCCCEEeeCCccccccCccc
Q psy13911 6 FLQNSSK-LKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDI-GPLN------KCRQLNTLHVAYNAITSLPDNC 75 (183)
Q Consensus 6 ~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~-~~~~------~l~~L~~l~l~~~~~~~~~~~~ 75 (183)
.+..+++ |+.|++++|.+..+|..+...+. |+.|++++|++.+. +.+. .+++|+.|++++|.+..++...
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~ 692 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692 (876)
T ss_dssp TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH
T ss_pred HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH
Confidence 3445555 55566665555555544444332 56666666655443 1111 2346778888888888777665
Q ss_pred ccCCCCCcEEEecCCcCccCCCCCCCCC-------CCccEEEeeCCcCCCCCC-cc--CCCcccEEeccCcccccccCCC
Q psy13911 76 ISAWSEMEELVLSGNGISSLPNTIPQSW-------PHLRVLRLHSNHLTSCPT-LY--LSSSLRVLDLSYNHLERLNLNT 145 (183)
Q Consensus 76 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~-~~--~~~~L~~l~l~~n~l~~~~~~~ 145 (183)
+..+++|+.|++++|.++.+|...+... ++|+.|++++|.++.+|. +. .+++|+.|++++|.+++++...
T Consensus 693 ~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l 772 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772 (876)
T ss_dssp HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhh
Confidence 6678888999999888888887766332 288899999988887774 44 7788999999999888875544
Q ss_pred CCCCCccEEEcCC------CCceeeCCCCcCCCcceeEEEEE
Q psy13911 146 LIPKQLQYLDVSG------NPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 146 ~~~~~l~~l~l~~------n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
...++|+.|++++ |.+.+..|..+.++++|+.|+|+
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 4448888888866 66677778888888888888774
No 73
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=1.4e-20 Score=131.20 Aligned_cols=163 Identities=19% Similarity=0.250 Sum_probs=140.3
Q ss_pred CCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 10 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
+..+..+++.++.+.+++ .+..+++|+.|++++|.++.+..+..+++|+.|++++|.++.+++ +..+++|+++++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334555677888888877 577899999999999999988888889999999999999998876 88899999999999
Q ss_pred CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCc
Q psy13911 90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169 (183)
Q Consensus 90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 169 (183)
|.++.++... . ++|+.|++++|.+++++.+..+++|+.|++++|.+++++ .....++|++|++++|.+++. ..+
T Consensus 95 N~l~~l~~~~--~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 95 NRLKNLNGIP--S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp SCCSCCTTCC--C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred CccCCcCccc--c-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHh
Confidence 9999887643 3 889999999999999888889999999999999999875 222238999999999999987 778
Q ss_pred CCCcceeEEEEE
Q psy13911 170 KSYRSYVRVYIQ 181 (183)
Q Consensus 170 ~~~~~l~~l~l~ 181 (183)
..+++|+.|+++
T Consensus 169 ~~l~~L~~L~l~ 180 (263)
T 1xeu_A 169 TRLKKVNWIDLT 180 (263)
T ss_dssp TTCCCCCEEEEE
T ss_pred ccCCCCCEEeCC
Confidence 899999999885
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=6.9e-20 Score=137.34 Aligned_cols=129 Identities=26% Similarity=0.362 Sum_probs=57.1
Q ss_pred hcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
..+++|+.|++++|.+..++. +..+++|+.|++++|.+...+.+..+++|+.|++++|.+...++ +..+++|+.+++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 334444444444444433322 23344444444444444444334444445555555544444333 444445555555
Q ss_pred cCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccc
Q psy13911 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 141 (183)
++|.++.++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.++++
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCc
Confidence 5554444333 123444445555444444443344444444444444444443
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.3e-20 Score=137.00 Aligned_cols=159 Identities=22% Similarity=0.266 Sum_probs=112.9
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCC-CCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLN-KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
+.+++.++.+..+|..+. ..++.|++++|+++.+ ..+. .+++|+.|++++|.++.+++..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777777777775432 4567777877777776 3454 6777788888777777777666777777888888877
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCC----CCCccEEEcCCCCceee
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLI----PKQLQYLDVSGNPRLHV 164 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~----~~~l~~l~l~~n~~~~~ 164 (183)
.++.++...+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++...+. .++|+.|++++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 777777766667777788888777777653 466777777888887777777665542 26777778877777776
Q ss_pred CCCCcCCCcc
Q psy13911 165 DPNHFKSYRS 174 (183)
Q Consensus 165 ~~~~~~~~~~ 174 (183)
++..+..++.
T Consensus 179 ~~~~~~~l~~ 188 (361)
T 2xot_A 179 PLTDLQKLPA 188 (361)
T ss_dssp CHHHHHHSCH
T ss_pred CHHHhhhccH
Confidence 6555555554
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=5.3e-20 Score=140.34 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=78.7
Q ss_pred CCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEec
Q psy13911 12 KLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS 88 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 88 (183)
.++.|++++|.+..++ ..+..+++|++|++++|++... .++..+++|++|++++|.+...++..+..+++|++++++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 4555555555555432 3444555555555555555444 234455555555555555555444444555555555555
Q ss_pred CCcCccCCC-CCCCCCCCccEEEeeCCc-CCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911 89 GNGISSLPN-TIPQSWPHLRVLRLHSNH-LTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH 163 (183)
Q Consensus 89 ~~~l~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~ 163 (183)
+|.++.++. ..+..+++|++|++++|. +..++ .+..+++|++|++++|.+++..+..+.. +++++|++++|.+..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 555543211 122244555555555554 33332 2444455555555555554443333332 445555555554433
Q ss_pred eCCCCcCCCcceeEEEE
Q psy13911 164 VDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 164 ~~~~~~~~~~~l~~l~l 180 (183)
++...+..+++|+.|++
T Consensus 187 ~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 187 LLEIFADILSSVRYLEL 203 (549)
T ss_dssp HHHHHHHSTTTBSEEEE
T ss_pred cchhhHhhcccccEEEc
Confidence 32222233455555544
No 77
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=1e-19 Score=139.95 Aligned_cols=167 Identities=23% Similarity=0.271 Sum_probs=147.0
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
+..++.|+.|++.++.+..++ .+..+++|+.|++++|++..+..+..+++|+.|++++|.+..++ .+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccCCCCCEEE
Confidence 356788999999999999887 47889999999999999999866899999999999999998865 388899999999
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP 166 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 166 (183)
+++|.+..++. + ..+++|+.|++++|.+++++.+..+++|+.|++++|.++++++ ....++|+.|++++|.++++
T Consensus 116 Ls~N~l~~l~~-l-~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 116 LEHNGISDING-L-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp CTTSCCCCCGG-G-GGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred ecCCCCCCCcc-c-cCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence 99999988753 3 3789999999999999998888999999999999999998866 33338999999999999986
Q ss_pred CCcCCCcceeEEEEE
Q psy13911 167 NHFKSYRSYVRVYIQ 181 (183)
Q Consensus 167 ~~~~~~~~l~~l~l~ 181 (183)
..+..+++|+.|+|+
T Consensus 191 ~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 191 RALAGLKNLDVLELF 205 (605)
T ss_dssp GGGTTCTTCSEEECC
T ss_pred hHHccCCCCCEEEcc
Confidence 468899999999875
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=1.7e-19 Score=135.19 Aligned_cols=167 Identities=17% Similarity=0.258 Sum_probs=128.7
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
++.+++|+.|++++|.+..++ .+..+++|+.|++++|.+.....+..+++|+.|++++|.+...++ +..+++|+.++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 567888888998888888764 456788888888888888887667788888888888888887655 67788888888
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCC
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP 166 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 166 (183)
+++|.++.++. +..+++|+.|++++|.+++.+.+..+++|+.|++++|.+++++ .....++|+.|++++|++++..|
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch
Confidence 88888877655 2367888888888888887766777788888888888887763 11222788888888888877755
Q ss_pred CCcCCCcceeEEEEE
Q psy13911 167 NHFKSYRSYVRVYIQ 181 (183)
Q Consensus 167 ~~~~~~~~l~~l~l~ 181 (183)
+..+++|+.|+++
T Consensus 371 --~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 371 --LANLTRITQLGLN 383 (466)
T ss_dssp --GTTCTTCCEEECC
T ss_pred --hhcCCCCCEEecc
Confidence 7778888877763
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=4.8e-19 Score=132.43 Aligned_cols=161 Identities=21% Similarity=0.228 Sum_probs=98.3
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
++.++.|+.|++++|.+.++| .+..+++|+.|++++|.+++++ +..+++|++|++++|.++.++ +..+++|++++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEE
Confidence 455677777777777777765 4666777777777777777653 666777777777777766652 55666777777
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---------------------CccCCCcccEEeccCcccccccCCC
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---------------------TLYLSSSLRVLDLSYNHLERLNLNT 145 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------~~~~~~~L~~l~l~~n~l~~~~~~~ 145 (183)
+++|.++.++ +..+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++ .
T Consensus 113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l 187 (457)
T 3bz5_A 113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--V 187 (457)
T ss_dssp CCSSCCSCCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--C
T ss_pred CCCCcCCeec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--c
Confidence 7777666654 235666666666666666543 2333444555555555555543 1
Q ss_pred CCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 146 LIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 146 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
...++++.|++++|.++++ .+..+++|+.|++
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence 1115555566665555554 2555566666554
No 80
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=3.6e-19 Score=121.01 Aligned_cols=143 Identities=22% Similarity=0.301 Sum_probs=127.6
Q ss_pred cEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCc
Q psy13911 37 EKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115 (183)
Q Consensus 37 ~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 115 (183)
+.++++++.++.++. + .++++.|++++|.++.+++..+..+++|+.|++++|.++.+....+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888888888732 3 2689999999999999988889999999999999999998877767789999999999999
Q ss_pred CCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 116 LTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 116 ~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++.++. +..+++|+.|++++|.++++++..+.. ++|++|++++|.++.+++..|..+++|+.++++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 999874 788899999999999999998777765 899999999999999988999999999999875
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2e-20 Score=133.47 Aligned_cols=170 Identities=21% Similarity=0.181 Sum_probs=137.3
Q ss_pred cCCCCcEEEccCCcCCC-ccccc--cccccccEEEccCCCCCCC-CCCCCC-----CCCCEEeeCCccccccCcccccCC
Q psy13911 9 NSSKLKVLNISKNCLKM-LPSLN--NENRYLEKLYLTSNALTDI-GPLNKC-----RQLNTLHVAYNAITSLPDNCISAW 79 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~ 79 (183)
.+++|++|++++|.+.+ +|..+ ..+++|+.|++++|++++. ..+..+ ++|++|++++|.+...++..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 68999999999999985 67554 8899999999999999887 223333 899999999999999988889999
Q ss_pred CCCcEEEecCCcCcc---CCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCcccccccC-CCCC-C
Q psy13911 80 SEMEELVLSGNGISS---LPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYNHLERLNL-NTLI-P 148 (183)
Q Consensus 80 ~~L~~l~l~~~~l~~---~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~~~~-~~~~-~ 148 (183)
++|+++++++|.+.. ++. ..+..+++|++|++++|.+++++. +..+++|+.|++++|.+++.++ ..+. .
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999998653 222 222478999999999999986432 3466899999999999998663 3333 3
Q ss_pred CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 149 KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 149 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++|++|++++|.++.+ |..+. ++|+.|+++
T Consensus 253 ~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLS 282 (312)
T ss_dssp TTCCEEECTTSCCSSC-CSSCC--SEEEEEECC
T ss_pred CCCCEEECCCCccChh-hhhcc--CCceEEECC
Confidence 8999999999999966 44444 889998875
No 82
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=5.9e-20 Score=133.58 Aligned_cols=154 Identities=26% Similarity=0.285 Sum_probs=132.4
Q ss_pred CCCcEEEccCCcCCCcc-cccc-ccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNN-ENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
+.++.|++++|.+..++ ..+. .+++|+.|++++|+++.+ ..|..+++|+.|++++|.++.+++..+..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 45899999999999977 5565 899999999999999988 5689999999999999999999888899999999999
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCC--c---cCCCcccEEeccCcccccccCCCCCC-CC--ccEEEcCC
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--L---YLSSSLRVLDLSYNHLERLNLNTLIP-KQ--LQYLDVSG 158 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~l~l~~n~l~~~~~~~~~~-~~--l~~l~l~~ 158 (183)
+++|.+..++...+..+++|+.|++++|.++.+|. + ..+++|+.|++++|.++.++...+.. +. ++.|++++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99999999887777789999999999999999874 3 56889999999999999887544332 33 47899999
Q ss_pred CCceee
Q psy13911 159 NPRLHV 164 (183)
Q Consensus 159 n~~~~~ 164 (183)
|++.+.
T Consensus 199 N~~~C~ 204 (361)
T 2xot_A 199 NPLECD 204 (361)
T ss_dssp SCEECC
T ss_pred CCccCC
Confidence 998763
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=3.9e-19 Score=136.10 Aligned_cols=149 Identities=24% Similarity=0.233 Sum_probs=121.8
Q ss_pred cccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCc--ccccCCCCCcEEEecCCcCcc-CCCCCCCCCCC
Q psy13911 31 NENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPD--NCISAWSEMEELVLSGNGISS-LPNTIPQSWPH 105 (183)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~~ 105 (183)
..+++|+.|++++|.+++. ..+..+++|+.|++++|.++.++. ..+..+++|+++++++|.++. ++...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5677889999999988875 667888999999999998887653 447788899999999999887 87776668889
Q ss_pred ccEEEeeCCcCCCC-CC-ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 106 LRVLRLHSNHLTSC-PT-LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 106 L~~L~l~~~~~~~~-~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
|+.|++++|.+++. +. +. ++|+.|++++|.++.++...+..++|++|++++|.++.+++..+..+++|+.++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 99999999988753 21 22 68999999999999888777655899999999999998866678899999988874
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.9e-19 Score=134.84 Aligned_cols=170 Identities=21% Similarity=0.237 Sum_probs=131.7
Q ss_pred CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccC--cccccCCCCCcEEE
Q psy13911 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLP--DNCISAWSEMEELV 86 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~l~ 86 (183)
.+++.|++++|.+..++. ...+++|+.|++++|.+.+. ..+..+++|+.|++++|.+..++ +..+..+++|++++
T Consensus 302 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred CceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 456666666666554331 25678899999999998884 66788899999999999888643 24578889999999
Q ss_pred ecCCcCcc-CCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeC
Q psy13911 87 LSGNGISS-LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 87 l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~ 165 (183)
+++|.++. +|...+..+++|+.|++++|.+++.......++|+.|++++|.++.++......++|++|++++|.++.++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC
Confidence 99999987 87766667889999999999886532111116899999999999987766665589999999999999876
Q ss_pred CCCcCCCcceeEEEEE
Q psy13911 166 PNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 166 ~~~~~~~~~l~~l~l~ 181 (183)
+..+.++++|+.++++
T Consensus 461 ~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TTTTTTCTTCCEEECC
T ss_pred HHHhccCCcccEEECc
Confidence 6678899999998874
No 85
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.1e-18 Score=119.26 Aligned_cols=147 Identities=22% Similarity=0.220 Sum_probs=128.7
Q ss_pred ccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911 34 RYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113 (183)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 113 (183)
..-+.++.+++++..++. .-.++|+.|++++|.++.+.+..+..+++|++|++++|.++.++...+..+++|+.|++++
T Consensus 19 Cs~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345678899888888733 1248999999999999999888899999999999999999999988777899999999999
Q ss_pred CcCCCCCC--ccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 114 NHLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 114 ~~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
|.+++++. +..+++|+.|++++|.++.++......++|++|++++|.++.+++..+..+++|+.|+++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 99998864 788999999999999999887655445999999999999999988899999999999874
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=3.9e-19 Score=141.74 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=52.7
Q ss_pred HHHhhcCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCCC----CCCCCCCCCCEEeeCCccccccCc-cccc
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI----GPLNKCRQLNTLHVAYNAITSLPD-NCIS 77 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~-~~~~ 77 (183)
+..++++++|+.|++++|.+..+ |..+..+++|+.|++++|.+.+. ..+.++++|++|++++|.+....+ ..+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 34566777777777777776664 46666666677777776666542 225566666666666666554432 2355
Q ss_pred CCCCCcEEEecCCc
Q psy13911 78 AWSEMEELVLSGNG 91 (183)
Q Consensus 78 ~~~~L~~l~l~~~~ 91 (183)
.+++|++|++++|.
T Consensus 146 ~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQ 159 (844)
T ss_dssp TCSSCCEEEEESSC
T ss_pred hCCCCCEEECCCCc
Confidence 55555555555543
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=2.2e-18 Score=128.88 Aligned_cols=164 Identities=21% Similarity=0.214 Sum_probs=123.1
Q ss_pred HhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEE
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
.++.+++|++|++++|.+++++ +..+++|+.|++++|.+++.+ +..+++|++|++++|.++.++ +..+++|+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYL 132 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEE
Confidence 4677888888888888888775 667777888888887777663 666777777777777766642 5566666666
Q ss_pred EecCCcCccCCCC-------------------CCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCC
Q psy13911 86 VLSGNGISSLPNT-------------------IPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL 146 (183)
Q Consensus 86 ~l~~~~l~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 146 (183)
++++|.++.++.. .+..+++|+.|++++|.++++| +..+++|+.+++++|.+++++. .
T Consensus 133 ~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l--~ 209 (457)
T 3bz5_A 133 NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLDL--N 209 (457)
T ss_dssp ECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCCC--T
T ss_pred ECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeecc--c
Confidence 6666665543211 1235678888899888888887 7888999999999999998742 2
Q ss_pred CCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 147 IPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 147 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
..++|++|++++|.+++++ +..+++|+.|+++
T Consensus 210 ~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCS 241 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC---CTTCTTCSEEECC
T ss_pred cCCCCCEEECcCCcccccC---ccccCCCCEEEee
Confidence 2389999999999999963 7889999999875
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.3e-18 Score=118.34 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=126.6
Q ss_pred ccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccC-cccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP-DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114 (183)
Q Consensus 36 L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 114 (183)
-+.++++++.++.++. .-...++.|++++|.++.++ ...+..+++|+.|++++|.++.++...+..+++|++|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 3589999999888732 11346789999999999884 456888999999999999999998877779999999999999
Q ss_pred cCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 115 HLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
.+++++. +..+++|++|++++|.++++++..+.. ++|++|++++|.++++.+..|..+++|+.|+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 9998863 888999999999999999987777665 899999999999999999999999999999875
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.6e-19 Score=128.36 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=107.6
Q ss_pred CCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC---CCCCCCCCCCE-EeeCCccccccCcccccCCCCCcEE
Q psy13911 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNT-LHVAYNAITSLPDNCISAWSEMEEL 85 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~-l~l~~~~~~~~~~~~~~~~~~L~~l 85 (183)
+++++|++++|.++.+| ..|.++++|+.|++++|++.+. .+|.+++++.. +.+..|.+..+++..+..+++|+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 57899999999999988 5688999999999999987654 56778888765 4555688888888888888899999
Q ss_pred EecCCcCccCCCCCCCCCCCccEEEeeCC-cCCCCC--CccCC-CcccEEeccCcccccccCCCCCCCCccEEEcC-CCC
Q psy13911 86 VLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSCP--TLYLS-SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVS-GNP 160 (183)
Q Consensus 86 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~-~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~-~n~ 160 (183)
++++|.++.++...+....++..+++.++ .+..++ .+... ..++.|++++|.++.++...+...+++++++. +|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 98888887666544334444555555442 444332 12222 23455555555555554444433444444443 233
Q ss_pred ceeeCCCCcCCCcceeEEEE
Q psy13911 161 RLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 161 ~~~~~~~~~~~~~~l~~l~l 180 (183)
++.+++.+|.++++|+.|++
T Consensus 190 l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp CCCCCTTTTTTEECCSEEEC
T ss_pred ccCCCHHHhccCcccchhhc
Confidence 44444444444444444443
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.9e-18 Score=131.80 Aligned_cols=150 Identities=30% Similarity=0.379 Sum_probs=84.9
Q ss_pred CcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92 (183)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 92 (183)
|+.|++++|.+..+| ..+++|+.|++++|.++.++.+.. +|+.|++++|.++.++. .+++|+.|++++|.+
T Consensus 82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 82 ITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQL 152 (571)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred CCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCcc
Confidence 344444444444333 223444444444444444422222 55555555555555433 345566666666666
Q ss_pred ccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCc-------cEEEcCCCCceeeC
Q psy13911 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQL-------QYLDVSGNPRLHVD 165 (183)
Q Consensus 93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l-------~~l~l~~n~~~~~~ 165 (183)
+.+|. .+++|+.|++++|.++++|.+. ++|+.|++++|.++.++. +. .+| +.|++++|.++.+
T Consensus 153 ~~lp~----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~--~~-~~L~~~~~~L~~L~Ls~N~l~~l- 222 (571)
T 3cvr_A 153 TMLPE----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA--VP-VRNHHSEETEIFFRCRENRITHI- 222 (571)
T ss_dssp SCCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSSCCCCC-
T ss_pred CcCCC----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh--HH-HhhhcccccceEEecCCCcceec-
Confidence 65554 3456777777777777666533 677777777777776655 22 366 8888888888876
Q ss_pred CCCcCCCcceeEEEEE
Q psy13911 166 PNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 166 ~~~~~~~~~l~~l~l~ 181 (183)
|..+..+++|+.|+|+
T Consensus 223 p~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 223 PENILSLDPTCTIILE 238 (571)
T ss_dssp CGGGGGSCTTEEEECC
T ss_pred CHHHhcCCCCCEEEee
Confidence 4445558888888764
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=2.3e-20 Score=133.49 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=132.4
Q ss_pred hhcCCCCcEEEccCCcCCCcccc-----------------ccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcc
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSL-----------------NNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~-----------------~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~ 67 (183)
+..+++|++|++++|.+.+++.. ...+++|+.|++++|+++.. ..+..+++|+.|++++|.
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 44555666666666555433210 12356789999999998887 467789999999999999
Q ss_pred ccccCcccc-cCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC-CccCCCcccEEeccCcccccccCCC
Q psy13911 68 ITSLPDNCI-SAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNT 145 (183)
Q Consensus 68 ~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~ 145 (183)
+...++..+ ..+++|+++++++|.++.++... .+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++...
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccccccc--ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence 998766555 46899999999999999886654 4899999999999999875 4788899999999999999887554
Q ss_pred CCCCCccEEEcCCCCce-eeCCCCcCCCcceeEEE
Q psy13911 146 LIPKQLQYLDVSGNPRL-HVDPNHFKSYRSYVRVY 179 (183)
Q Consensus 146 ~~~~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~ 179 (183)
...++++.|++++|++. +..+..+..++.|+.++
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 34489999999999998 44456667776666544
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.2e-20 Score=133.22 Aligned_cols=168 Identities=20% Similarity=0.161 Sum_probs=92.5
Q ss_pred CCCCcEEEccCCcCCC-ccccc--cccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911 10 SSKLKVLNISKNCLKM-LPSLN--NENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 10 ~~~L~~l~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
++.|++|++++|.+.+ .|..+ ..+++|+.|++++|.+... ..+..+++|++|++++|.+...++..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456677776666654 33333 5566666666666665542 1122455566666666665555555555555
Q ss_pred CCcEEEecCCcC----------------------------ccCCCC---CCCCCCCccEEEeeCCcCCCC-C-CccCC--
Q psy13911 81 EMEELVLSGNGI----------------------------SSLPNT---IPQSWPHLRVLRLHSNHLTSC-P-TLYLS-- 125 (183)
Q Consensus 81 ~L~~l~l~~~~l----------------------------~~~~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~-- 125 (183)
+|++|++++|.+ +.++.. .+..+++|++|++++|.+++. | .+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 566666655543 222111 111335556666666666554 2 23333
Q ss_pred -CcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 126 -SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 126 -~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++|++|++++|.++.++.... ++|++|++++|.+++++ . +..+++|+.|+++
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~-~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP-Q-PDELPEVDNLTLD 302 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-C-TTSCCCCSCEECS
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-h-hhhCCCccEEECc
Confidence 466777777776666543332 56777777777776652 2 5566667666653
No 93
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.2e-18 Score=125.27 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=88.9
Q ss_pred CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCccc-EEeccCcccccccCCCCCC-CCccEE
Q psy13911 79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLR-VLDLSYNHLERLNLNTLIP-KQLQYL 154 (183)
Q Consensus 79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~-~l~l~~n~l~~~~~~~~~~-~~l~~l 154 (183)
+++|+.+++.+|.++.++..+|+.+.+|+.+++.+| ++.++ .|.++.+|+ .+++.. .++.++..++.. ++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678899999999999999999989999999999987 77665 588999999 999987 788888888876 899999
Q ss_pred EcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 155 DVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 155 ~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
++.+|.++.+.+.+|.+|++|+.+|.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999999999999999874
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=140.14 Aligned_cols=173 Identities=19% Similarity=0.145 Sum_probs=141.4
Q ss_pred cCCCCcEEEccCCcCCCc-cccccccccccEEEccCCCCCC-C--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcE
Q psy13911 9 NSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTD-I--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEE 84 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 84 (183)
..++++.|++++|.+..+ +..+..+++|+.|++++|.... + .+|.++++|++|++++|.+....+..+..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 457899999999999986 4788999999999999996433 3 56899999999999999999988888999999999
Q ss_pred EEecCCcCcc-CC-CCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCCCC---CCccEEEc
Q psy13911 85 LVLSGNGISS-LP-NTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIP---KQLQYLDV 156 (183)
Q Consensus 85 l~l~~~~l~~-~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~~~---~~l~~l~l 156 (183)
|++++|.+.. .+ ...+..+++|++|++++|.+++.+ .++.+++|++|++++|.+++.....+.. ++++.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 9999999885 33 334568999999999999998753 3788999999999999998876555443 67888888
Q ss_pred CCCCceeeCCCCcCCCcc------eeEEEEE
Q psy13911 157 SGNPRLHVDPNHFKSYRS------YVRVYIQ 181 (183)
Q Consensus 157 ~~n~~~~~~~~~~~~~~~------l~~l~l~ 181 (183)
++|.+.+..+..+..++. |+.|+++
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred CCCccccccccchhhcCCccccCceeEEecC
Confidence 888888776666666655 7777653
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.7e-18 Score=132.48 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=129.9
Q ss_pred cCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
.|...+.++++++.++.+|..+. ++++.|++++|.+... ..+.++++|++|++++|.++.+.+..+..+++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 45556899999999999996553 8999999999999988 5789999999999999999999888899999999999
Q ss_pred ecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCCCCCCCCc--cEEEcCCCCc
Q psy13911 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQL--QYLDVSGNPR 161 (183)
Q Consensus 87 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l--~~l~l~~n~~ 161 (183)
+++|.++.+|.. .+++|++|++++|.+++++ .++.+++|++|++++|.+++.....+ +++ ++|++++|.+
T Consensus 107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV--AHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGG--TTSCEEEEEEEESSC
T ss_pred CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhh--hhceeeEEEeecccc
Confidence 999999998876 6899999999999998864 48888999999999999887432222 555 9999999988
Q ss_pred --eeeCCCCcCCC
Q psy13911 162 --LHVDPNHFKSY 172 (183)
Q Consensus 162 --~~~~~~~~~~~ 172 (183)
++..+..+..+
T Consensus 182 ~~~~~~~~~l~~l 194 (562)
T 3a79_B 182 HIKGGETESLQIP 194 (562)
T ss_dssp CCCSSSCCEEEEC
T ss_pred cccccCccccccc
Confidence 66666655543
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=129.26 Aligned_cols=171 Identities=13% Similarity=0.016 Sum_probs=122.3
Q ss_pred CCCcEEEccCCcCCC--ccc--cccccccccEEEccCCCCCCC--CCC--CCCCCCCEEeeCCccccccCc----ccccC
Q psy13911 11 SKLKVLNISKNCLKM--LPS--LNNENRYLEKLYLTSNALTDI--GPL--NKCRQLNTLHVAYNAITSLPD----NCISA 78 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~--~~~--~~~~~~~L~~L~l~~~~~~~~--~~~--~~l~~L~~l~l~~~~~~~~~~----~~~~~ 78 (183)
..++.+.+.++.+.. +.. .+..+++|+.|++++|.+.+. ..+ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356788888877763 211 123456799999999998876 444 789999999999999886433 23456
Q ss_pred CCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC---CC---CccCCCcccEEeccCcccccccCC---CC-CC
Q psy13911 79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS---CP---TLYLSSSLRVLDLSYNHLERLNLN---TL-IP 148 (183)
Q Consensus 79 ~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~---~~---~~~~~~~L~~l~l~~n~l~~~~~~---~~-~~ 148 (183)
+++|++|++++|.+..++...+..+++|++|++++|.+.+ ++ .++.+++|++|++++|.++.++.. .+ ..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 8899999999999998887777789999999999998754 21 235667777788877777654332 11 11
Q ss_pred CCccEEEcCCCCceeeCCCCcCCC---cceeEEEEE
Q psy13911 149 KQLQYLDVSGNPRLHVDPNHFKSY---RSYVRVYIQ 181 (183)
Q Consensus 149 ~~l~~l~l~~n~~~~~~~~~~~~~---~~l~~l~l~ 181 (183)
++|++|++++|.+++..|..+..+ ++|+.|+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 667777777777777655555554 467666653
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=6.6e-20 Score=138.10 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=113.6
Q ss_pred ccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCccccc-CCCCCcEEEecCCcCccCCCCCCCCCCCccEEE
Q psy13911 34 RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCIS-AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR 110 (183)
Q Consensus 34 ~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 110 (183)
++|+.|++++|.+++. ..+..+++|+.|++++|.++..++..+. .+++|++|++++|.++.++... .+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc--cCCCCCEEE
Confidence 4455666666666655 3567789999999999999987666665 6899999999999999886654 589999999
Q ss_pred eeCCcCCCCC-CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCcee-eCCCCcCCCcceeEE
Q psy13911 111 LHSNHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH-VDPNHFKSYRSYVRV 178 (183)
Q Consensus 111 l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l 178 (183)
+++|.++++| .+..+++|+.|++++|.+++++......++++.|++++|++.+ ..+..+..++.++.+
T Consensus 198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 9999999875 5788899999999999999987654444899999999999983 335556666655544
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=1e-18 Score=116.83 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=123.2
Q ss_pred cccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEE
Q psy13911 31 NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR 110 (183)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 110 (183)
..+++|+.|++++|.+..++.+..+++|+.|++++|.+...+ .+..+++|+++++++|.++......+..+++|+.|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567899999999999998777889999999999999877654 488899999999999999863333344899999999
Q ss_pred eeCCcCCCC--CCccCCCcccEEeccCcc-cccccCCCCCCCCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 111 LHSNHLTSC--PTLYLSSSLRVLDLSYNH-LERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 111 l~~~~~~~~--~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+++|.+++. +.+..+++|++|++++|. +++++ .....++|++|++++|.++++. .+.++++|+.|+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEEC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEee
Confidence 999999873 357888999999999997 88875 2222389999999999999864 78899999999885
No 99
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=131.38 Aligned_cols=151 Identities=22% Similarity=0.215 Sum_probs=107.9
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
+.++++++.++.+|..+. ++++.|++++|.++.. ..+.++++|++|++++|.++.+.+..+..+++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 567888888888776544 7788888888887776 457778888888888888887766667788888888888888
Q ss_pred CccCCCCCCCCCCCccEEEeeCCcCCCC--C-CccCCCcccEEeccCcccccccCCCCCCCCc--cEEEcCCCCc--eee
Q psy13911 92 ISSLPNTIPQSWPHLRVLRLHSNHLTSC--P-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQL--QYLDVSGNPR--LHV 164 (183)
Q Consensus 92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l--~~l~l~~n~~--~~~ 164 (183)
++.+|.. .+++|++|++++|.++++ | .++.+++|++|++++|.+++.....+ +++ ++|++++|.+ .+.
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhcccc--ccceeeEEEeeccccccccc
Confidence 8777665 567788888888877763 3 47777788888888887766322111 455 7777777766 444
Q ss_pred CCCCcCC
Q psy13911 165 DPNHFKS 171 (183)
Q Consensus 165 ~~~~~~~ 171 (183)
.|..+..
T Consensus 156 ~~~~l~~ 162 (520)
T 2z7x_B 156 DPEGLQD 162 (520)
T ss_dssp CTTTTTT
T ss_pred ccccccc
Confidence 4444443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.2e-17 Score=127.43 Aligned_cols=151 Identities=26% Similarity=0.312 Sum_probs=127.8
Q ss_pred CCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 10 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
+.+++.|++++|.+.++|..+ +++|+.|++++|.++.++ ..+++|+.|++++|.++.++. +.. +|++|++++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred cCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 348999999999999998755 378999999999999776 568999999999999998766 444 999999999
Q ss_pred CcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCc
Q psy13911 90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169 (183)
Q Consensus 90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 169 (183)
|.++.+|. .+++|+.|++++|.++++|. .+++|+.|++++|.+++++. +. ++|+.|++++|.++.++. +
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~--~ 198 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA--V 198 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC--C
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh--H
Confidence 99999887 47899999999999999887 56899999999999999876 43 899999999999997754 5
Q ss_pred CCCcce-------eEEEEE
Q psy13911 170 KSYRSY-------VRVYIQ 181 (183)
Q Consensus 170 ~~~~~l-------~~l~l~ 181 (183)
.. +| +.|+++
T Consensus 199 ~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp C----------CCEEEECC
T ss_pred HH--hhhcccccceEEecC
Confidence 44 66 777764
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=2.5e-18 Score=112.08 Aligned_cols=134 Identities=21% Similarity=0.189 Sum_probs=100.0
Q ss_pred cCCCCcEEEccCCcCC--CccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 9 NSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
..+.++.|++++|.+. .+|..+..+++|+.|++++|.++....+..+++|+.|++++|.+....+..+..+++|++++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4477888888888887 67777788888888888888887776777788888888888888775555566677888888
Q ss_pred ecCCcCccCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCccccccc
Q psy13911 87 LSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYNHLERLN 142 (183)
Q Consensus 87 l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~~~ 142 (183)
+++|.++.++. ..+..+++|+.|++++|.+++.+. +..+++|+++++++|.+.+++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 88887777652 223367777888888877777653 566677777777777666654
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=2.7e-17 Score=122.90 Aligned_cols=155 Identities=24% Similarity=0.298 Sum_probs=97.6
Q ss_pred CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
++|+.|++++|.+.++|.. +++|+.|++++|++..++.+ .++|++|++++|.++.++ .+..+++|+++++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCC
Confidence 3556666666665555532 24566666666655554322 156777777777777655 2677777777777777
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCCceeeCCCCcC
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 170 (183)
.++.+|.. ..+|++|++++|.++++|.++.+++|+.+++++|.+++++.. ++++++|++++|.++.++ .+.
T Consensus 164 ~l~~lp~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp--~~~ 234 (454)
T 1jl5_A 164 SLKKLPDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELP--ELQ 234 (454)
T ss_dssp CCSCCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCC--CCT
T ss_pred cCcccCCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCccc--ccC
Confidence 77766543 246777777777777776677777777777777777664321 146667777777666442 366
Q ss_pred CCcceeEEEEE
Q psy13911 171 SYRSYVRVYIQ 181 (183)
Q Consensus 171 ~~~~l~~l~l~ 181 (183)
++++|+.|+++
T Consensus 235 ~l~~L~~L~l~ 245 (454)
T 1jl5_A 235 NLPFLTTIYAD 245 (454)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCCCEEECC
Confidence 66666666653
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=4.3e-18 Score=123.27 Aligned_cols=174 Identities=17% Similarity=0.132 Sum_probs=133.7
Q ss_pred HHhhcCCCCcEEEccCCcCCC-cc-ccccccccccE-EEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKM-LP-SLNNENRYLEK-LYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW 79 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~-~~-~~~~~~~~L~~-L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 79 (183)
.+|+.+++|++|++++|.+.+ ++ ..|.+++++.. +.+..|++..+ ..|..+++|+.+++++|.+..+++..+...
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence 468999999999999999865 66 56788888765 55567888887 568899999999999999988877666666
Q ss_pred CCCcEEEecC-CcCccCCCCCCCCC-CCccEEEeeCCcCCCCCC-ccCCCcccEEecc-CcccccccCCCCCC-CCccEE
Q psy13911 80 SEMEELVLSG-NGISSLPNTIPQSW-PHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLS-YNHLERLNLNTLIP-KQLQYL 154 (183)
Q Consensus 80 ~~L~~l~l~~-~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~-~n~l~~~~~~~~~~-~~l~~l 154 (183)
.++..+++.+ +.+..++...+... ..++.|++++|.++.++. .....+++.++++ +|.++.++..++.. ++|++|
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 6777888765 57777777655444 357888888888887753 3344678888886 46788887777665 888888
Q ss_pred EcCCCCceeeCCCCcCCCcceeEE
Q psy13911 155 DVSGNPRLHVDPNHFKSYRSYVRV 178 (183)
Q Consensus 155 ~l~~n~~~~~~~~~~~~~~~l~~l 178 (183)
++++|.++.+++..+.++++|+.+
T Consensus 208 dLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 208 DISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp ECTTSCCCCCCSSSCTTCCEEECT
T ss_pred hcCCCCcCccChhhhccchHhhhc
Confidence 888888888877777777666544
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=7.5e-17 Score=120.49 Aligned_cols=121 Identities=22% Similarity=0.283 Sum_probs=58.6
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
+|++|++++|.+.++| .+..+++|+.|++++|+++.++.. ..+|++|++++|.++.++ .+..+++|+++++++|.
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCc
Confidence 4555555555555544 345555555555555555443221 134555555555554433 14445555555555555
Q ss_pred CccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccc
Q psy13911 92 ISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 92 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 141 (183)
++.+|.. ..+|+.|++++|.++.+|.++.+++|+++++++|.++++
T Consensus 207 l~~l~~~----~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 207 LKKLPDL----PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CSSCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred CCcCCCC----cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc
Confidence 4443321 134455555555444444444455555555555554443
No 105
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=4.8e-18 Score=113.15 Aligned_cols=125 Identities=24% Similarity=0.318 Sum_probs=108.4
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCCC---CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIG---PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
+.++++++.+..+|..+. ..++.|++++|.++.+. .+..+++|+.|++++|.++.+.+..+..+++|+++++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999999986553 38999999999998882 3788999999999999999988888999999999999999
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCC-C-CccCCCcccEEeccCccccc
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSC-P-TLYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~l~l~~n~l~~ 140 (183)
.++.++...+..+++|+.|++++|.+++. | .+..+++|+++++++|.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99988887676889999999999999876 3 47788899999999998764
No 106
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.74 E-value=3.6e-18 Score=112.19 Aligned_cols=134 Identities=21% Similarity=0.302 Sum_probs=93.9
Q ss_pred hhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 7 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
+..++.|+.|++++|.+..++......++|+.|++++|.++.+..+..+++|+.|++++|.++.+++..+..+++|++++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34567788888888887777554333447888888888777776677777788888888877777666556777777777
Q ss_pred ecCCcCccCCC-CCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEeccCccccc
Q psy13911 87 LSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 87 l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~ 140 (183)
+++|.++.++. ..+..+++|+.+++++|.++..|. +..+++|+.++++.|...+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777776664 122366777777777777776654 5666777777777765543
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.3e-16 Score=122.97 Aligned_cols=154 Identities=33% Similarity=0.347 Sum_probs=98.7
Q ss_pred CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCC----C--------------CCCCCCCEEeeCCccccccC
Q psy13911 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP----L--------------NKCRQLNTLHVAYNAITSLP 72 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~--------------~~l~~L~~l~l~~~~~~~~~ 72 (183)
++|+.|++++|.+..+|.. +++|+.|++++|.++.++. + ..+++|+.|++++|.++.++
T Consensus 121 ~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred CCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC
Confidence 3444444444444444432 2556666666666555411 0 11244555555555555443
Q ss_pred cccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCcc
Q psy13911 73 DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQ 152 (183)
Q Consensus 73 ~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~ 152 (183)
. ..++|+.+++.+|.++.++. .+++|+.|++++|.++++| ..+++|+.|++++|.++.++. ..++|+
T Consensus 198 ~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~ 264 (622)
T 3g06_A 198 T----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLL 264 (622)
T ss_dssp C----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCC
T ss_pred C----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCc
Confidence 3 12455566666665555543 2367888888888888877 455789999999999988765 348899
Q ss_pred EEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 153 YLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 153 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
.|++++|.++.+ |..+.++++|+.|+|+
T Consensus 265 ~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 265 SLSVYRNQLTRL-PESLIHLSSETTVNLE 292 (622)
T ss_dssp EEECCSSCCCSC-CGGGGGSCTTCEEECC
T ss_pred EEeCCCCCCCcC-CHHHhhccccCEEEec
Confidence 999999999966 6778899999998875
No 108
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.3e-16 Score=106.29 Aligned_cols=124 Identities=28% Similarity=0.411 Sum_probs=102.3
Q ss_pred cEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcC
Q psy13911 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92 (183)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 92 (183)
+.++++++.+..+|..+ .++++.|++++|.++.+ ..+..+++|+.|++++|.++.+++..|..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57888888888888654 36788899999888877 6777888899999999888888887788888899999999988
Q ss_pred ccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCcccc
Q psy13911 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLE 139 (183)
Q Consensus 93 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~ 139 (183)
+.++...+..+++|+.|++++|.++.++. +..+++|+.+++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88887766688888999998888888763 677788888888888654
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=3.9e-16 Score=102.50 Aligned_cols=126 Identities=29% Similarity=0.365 Sum_probs=99.1
Q ss_pred CcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
.+.+++.++.+..+|..+ .++++.|++++|+++.+ ..+..+++|+.|++++|.++.+++..+..+++|+++++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 467888888888887543 36788888888888877 34677888888888888888877776778888888888888
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCCCC--ccCCCcccEEeccCccccc
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~n~l~~ 140 (183)
.++.++...+..+++|+.|++++|.+++++. +..+++|+++++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8888877766577888888888888887763 5667788888888887664
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=2.1e-17 Score=105.62 Aligned_cols=125 Identities=26% Similarity=0.283 Sum_probs=88.6
Q ss_pred cCCCCcEEEccCCcCC--CccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEE
Q psy13911 9 NSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELV 86 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 86 (183)
..++++.|++++|.+. .+|..+..+++|+.|++++|.++....+..+++|+.|++++|.+....+..+..+++|++++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3467888888888887 57777777888888888888877776677778888888888877765555555677777777
Q ss_pred ecCCcCccCC--CCCCCCCCCccEEEeeCCcCCCCCC-----ccCCCcccEEecc
Q psy13911 87 LSGNGISSLP--NTIPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLS 134 (183)
Q Consensus 87 l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~ 134 (183)
+++|.++.++ ..+ ..+++|+.|++++|.+++.+. +..+++|+.++++
T Consensus 95 ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776653 232 366777777777777766553 5556666666654
No 111
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=7.5e-16 Score=101.15 Aligned_cols=130 Identities=25% Similarity=0.298 Sum_probs=111.4
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911 35 YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114 (183)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 114 (183)
..+.++++++++..++. .-.++|+.|++++|.++.+++..+..+++|+++++++|.++.++...+..+++|+.|++++|
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 35678888888887732 23478999999999999988887889999999999999999998887768999999999999
Q ss_pred cCCCCCC--ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeC
Q psy13911 115 HLTSCPT--LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~ 165 (183)
.+++++. +..+++|+++++++|.+++++...+.. +++++|++++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 9998764 678899999999999999988776554 89999999999987643
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=1.1e-15 Score=117.89 Aligned_cols=140 Identities=32% Similarity=0.352 Sum_probs=73.8
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCc
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG 91 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 91 (183)
.++.++++++.++.+|..+. ++|+.|++++|.++.++. .+++|++|++++|.++.++. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCc
Confidence 46666666666666664433 566666666666665533 34566666666666555443 34555555555555
Q ss_pred CccCCCCCC----------------CCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCcccccccCCCCCCCCccEEE
Q psy13911 92 ISSLPNTIP----------------QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLD 155 (183)
Q Consensus 92 l~~~~~~~~----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~ 155 (183)
++.++.... ..+++|++|++++|.++++|. ...+|+.|++++|.++.++ ...++|+.|+
T Consensus 113 l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~ 187 (622)
T 3g06_A 113 LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP---MLPSGLQELS 187 (622)
T ss_dssp CCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred CCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc---ccCCCCcEEE
Confidence 555443100 012444455555554444432 1234555555555555543 1126677777
Q ss_pred cCCCCceee
Q psy13911 156 VSGNPRLHV 164 (183)
Q Consensus 156 l~~n~~~~~ 164 (183)
+++|.++++
T Consensus 188 Ls~N~l~~l 196 (622)
T 3g06_A 188 VSDNQLASL 196 (622)
T ss_dssp CCSSCCSCC
T ss_pred CCCCCCCCC
Confidence 777776664
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=3e-18 Score=124.61 Aligned_cols=176 Identities=22% Similarity=0.214 Sum_probs=99.0
Q ss_pred HHhhcCC-CCcEEEccCCcCCCcc-cccccc-----ccccEEEccCCCCCCC--C----CCCCC-CCCCEEeeCCccccc
Q psy13911 5 LFLQNSS-KLKVLNISKNCLKMLP-SLNNEN-----RYLEKLYLTSNALTDI--G----PLNKC-RQLNTLHVAYNAITS 70 (183)
Q Consensus 5 ~~~~~~~-~L~~l~l~~~~~~~~~-~~~~~~-----~~L~~L~l~~~~~~~~--~----~~~~l-~~L~~l~l~~~~~~~ 70 (183)
..+..++ +|++|++++|.+.... ..+..+ ++|+.|++++|.++.. . .+..+ ++|+.|++++|.++.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 4455555 5666666666555432 233332 5566666666665543 1 13333 566666666666665
Q ss_pred cCcccc----cC-CCCCcEEEecCCcCccCC-----CCCCCCC-CCccEEEeeCCcCCCCC------CccCC-CcccEEe
Q psy13911 71 LPDNCI----SA-WSEMEELVLSGNGISSLP-----NTIPQSW-PHLRVLRLHSNHLTSCP------TLYLS-SSLRVLD 132 (183)
Q Consensus 71 ~~~~~~----~~-~~~L~~l~l~~~~l~~~~-----~~~~~~~-~~L~~L~l~~~~~~~~~------~~~~~-~~L~~l~ 132 (183)
.....+ .. .++|++|++++|.++... ..+. .. ++|++|++++|.+++.. .+..+ ++|+.|+
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEE
Confidence 444332 22 246677777766665211 1111 22 36777777777776543 12333 4788888
Q ss_pred ccCcccccccCCCCC------CCCccEEEcCCCCceeeCC----CCcCCCcceeEEEEE
Q psy13911 133 LSYNHLERLNLNTLI------PKQLQYLDVSGNPRLHVDP----NHFKSYRSYVRVYIQ 181 (183)
Q Consensus 133 l~~n~l~~~~~~~~~------~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~ 181 (183)
+++|.+++.+...+. .++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 888887774322111 1478888888888876544 345667777777764
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=5.8e-16 Score=103.02 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=108.4
Q ss_pred ccEEEccCCCCCCCCC-CCCCCCCCEEeeCCccccccCcc-cccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911 36 LEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDN-CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113 (183)
Q Consensus 36 L~~L~l~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 113 (183)
-+.+++++++++.++. + ..+++.|++++|.+..+++. .+..+++|++|++++|.++.++...+..+++|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3788999999988733 3 23899999999999988764 488899999999999999988776666899999999999
Q ss_pred CcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 114 NHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 114 ~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
|.+++++ .+..+++|++|++++|.++++.+..+.. +++++|++++|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999875 3788899999999999999987766655 8999999999998764
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1e-15 Score=101.89 Aligned_cols=126 Identities=25% Similarity=0.245 Sum_probs=109.5
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcC
Q psy13911 37 EKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116 (183)
Q Consensus 37 ~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 116 (183)
+.++++++.++.++.- -.++++.|++++|.++.++ ..+..+++|+.|++++|.++.++...+..+++|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 5788999998887321 2368999999999999877 4589999999999999999999988777899999999999999
Q ss_pred CCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceee
Q psy13911 117 TSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164 (183)
Q Consensus 117 ~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~ 164 (183)
++++ .+..+++|+.|++++|.++.++...+.. ++++.|++++|++.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9876 4888999999999999999998876665 8999999999998763
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=5.9e-19 Score=134.89 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=102.8
Q ss_pred CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccEEeccCc
Q psy13911 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYN 136 (183)
Q Consensus 57 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~n 136 (183)
.|+.|++++|.++.++. +..+++|+.|++++|.++.+|..+. .+++|+.|++++|.++++|.++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhh-cCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence 58899999999998764 8899999999999999999987665 89999999999999999998899999999999999
Q ss_pred cccccc-CCCCCC-CCccEEEcCCCCceeeCCCC---cCCCcceeEEEE
Q psy13911 137 HLERLN-LNTLIP-KQLQYLDVSGNPRLHVDPNH---FKSYRSYVRVYI 180 (183)
Q Consensus 137 ~l~~~~-~~~~~~-~~l~~l~l~~n~~~~~~~~~---~~~~~~l~~l~l 180 (183)
.++++. +..+.. ++|+.|++++|++++.++.. +..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999985 444443 89999999999999876532 234778887753
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=8.7e-19 Score=128.43 Aligned_cols=125 Identities=18% Similarity=0.120 Sum_probs=60.6
Q ss_pred CCCCEEeeCCccccccC-c---ccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCC-----CC-
Q psy13911 56 RQLNTLHVAYNAITSLP-D---NCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTS-----CP- 120 (183)
Q Consensus 56 ~~L~~l~l~~~~~~~~~-~---~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~- 120 (183)
++|++|++++|.+.... + ..+..+++|++|++++|.++. +....+..+++|+.|++++|.++. ++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45555555555544111 1 123345556666666555541 111112245566666666666531 22
Q ss_pred CccCCCcccEEeccCcccccccCC----C---CCCCCccEEEcCCCCcee----eCCCCc-CCCcceeEEEE
Q psy13911 121 TLYLSSSLRVLDLSYNHLERLNLN----T---LIPKQLQYLDVSGNPRLH----VDPNHF-KSYRSYVRVYI 180 (183)
Q Consensus 121 ~~~~~~~L~~l~l~~n~l~~~~~~----~---~~~~~l~~l~l~~n~~~~----~~~~~~-~~~~~l~~l~l 180 (183)
.+..+++|+.|++++|.+++.+.. . ...++|++|++++|.+++ ..+..+ .++++|+.|++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 244555666666666666554111 1 112556666666666665 123333 44566666654
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.3e-18 Score=125.13 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=102.5
Q ss_pred cCCCCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc-ccccc-CcccccCCCCC
Q psy13911 9 NSSKLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN-AITSL-PDNCISAWSEM 82 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~L 82 (183)
.+++|++|++++|.+.. ++..+..+++|+.|++++|.+... ..+..+++|++|++++| .++.. .+..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 35666666666666553 445556666677777766665543 34555667777777766 45431 22235556677
Q ss_pred cEEEecCC-cCcc--CCCCCCCCCC-CccEEEeeCC--cCCC--CC-CccCCCcccEEeccCcc-cccccCCCCCC-CCc
Q psy13911 83 EELVLSGN-GISS--LPNTIPQSWP-HLRVLRLHSN--HLTS--CP-TLYLSSSLRVLDLSYNH-LERLNLNTLIP-KQL 151 (183)
Q Consensus 83 ~~l~l~~~-~l~~--~~~~~~~~~~-~L~~L~l~~~--~~~~--~~-~~~~~~~L~~l~l~~n~-l~~~~~~~~~~-~~l 151 (183)
+++++++| .++. ++..+. .++ +|++|++++| .++. ++ .+..+++|+.|++++|. +++.....+.. ++|
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 77777776 6653 222222 456 7777777777 3332 22 24556778888888777 55543333333 778
Q ss_pred cEEEcCCCC-ceeeCCCCcCCCcceeEEEEE
Q psy13911 152 QYLDVSGNP-RLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 152 ~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~ 181 (183)
++|++++|. +.......+.++++|+.|+++
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 888888874 322222356778888887763
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.2e-16 Score=104.06 Aligned_cols=131 Identities=23% Similarity=0.250 Sum_probs=97.6
Q ss_pred cccccEEEccCCCCC--CC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEE
Q psy13911 33 NRYLEKLYLTSNALT--DI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109 (183)
Q Consensus 33 ~~~L~~L~l~~~~~~--~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L 109 (183)
.++++.|++++|.+. .+ ..+..+++|+.|++++|.++.+ ..+..+++|+++++++|.++...+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888887 44 4457788888888888888776 447778888888888888877444444357888888
Q ss_pred EeeCCcCCCCC---CccCCCcccEEeccCcccccccC---CCCC-CCCccEEEcCCCCceeeC
Q psy13911 110 RLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNL---NTLI-PKQLQYLDVSGNPRLHVD 165 (183)
Q Consensus 110 ~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~---~~~~-~~~l~~l~l~~n~~~~~~ 165 (183)
++++|.+++++ .+..+++|+.|++++|.+++++. ..+. .++|++|++.+|.+..++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 88888888764 46777888888888888887765 2232 378888888888777653
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=2.1e-18 Score=125.39 Aligned_cols=179 Identities=21% Similarity=0.147 Sum_probs=134.3
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCcc-----ccccccc-cccEEEccCCCCCCC--CCCCC-----CCCCCEEeeCCcccc
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLP-----SLNNENR-YLEKLYLTSNALTDI--GPLNK-----CRQLNTLHVAYNAIT 69 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~-~L~~L~l~~~~~~~~--~~~~~-----l~~L~~l~l~~~~~~ 69 (183)
++.++...++|++|++++|.+...+ ..+..++ +|+.|++++|.++.. ..+.. .++|++|++++|.++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 5666777777999999999998765 5567777 899999999998876 23333 289999999999998
Q ss_pred ccCccc----ccCC-CCCcEEEecCCcCccCCCCC----CCC-CCCccEEEeeCCcCCCCC------CccCCC-cccEEe
Q psy13911 70 SLPDNC----ISAW-SEMEELVLSGNGISSLPNTI----PQS-WPHLRVLRLHSNHLTSCP------TLYLSS-SLRVLD 132 (183)
Q Consensus 70 ~~~~~~----~~~~-~~L~~l~l~~~~l~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~------~~~~~~-~L~~l~ 132 (183)
...+.. +..+ ++|++|++++|.++..+... +.. .++|++|++++|.+++.. .+...+ +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 766553 3344 89999999999998665422 112 468999999999988542 133444 899999
Q ss_pred ccCcccccccCCCCCC------CCccEEEcCCCCceeeCC----CCcCC-CcceeEEEEE
Q psy13911 133 LSYNHLERLNLNTLIP------KQLQYLDVSGNPRLHVDP----NHFKS-YRSYVRVYIQ 181 (183)
Q Consensus 133 l~~n~l~~~~~~~~~~------~~l~~l~l~~n~~~~~~~----~~~~~-~~~l~~l~l~ 181 (183)
+++|.+++.+...+.. ++|++|++++|.+.+... ..+.. .++|+.|+++
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 9999998876533221 589999999999987432 33333 4588888875
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.1e-18 Score=124.11 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=84.5
Q ss_pred CCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC---CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEe
Q psy13911 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVL 87 (183)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 87 (183)
+.++.+++.++.+.+.+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 555666666665555443344555666666666554432 23445556666666665555433334555556666666
Q ss_pred cCC-cCcc--CCCCCCCCCCCccEEEeeCC-cCCC--CC-CccCCC-cccEEeccCc--cccc--ccCCCCCCCCccEEE
Q psy13911 88 SGN-GISS--LPNTIPQSWPHLRVLRLHSN-HLTS--CP-TLYLSS-SLRVLDLSYN--HLER--LNLNTLIPKQLQYLD 155 (183)
Q Consensus 88 ~~~-~l~~--~~~~~~~~~~~L~~L~l~~~-~~~~--~~-~~~~~~-~L~~l~l~~n--~l~~--~~~~~~~~~~l~~l~ 155 (183)
++| .++. ++..+ ..+++|++|++++| .+++ ++ .+..++ +|++|++++| .+++ ++......++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 655 3441 22212 14555666666665 5543 12 234445 5666666655 2321 111111115566666
Q ss_pred cCCCC-ceeeCCCCcCCCcceeEEEE
Q psy13911 156 VSGNP-RLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 156 l~~n~-~~~~~~~~~~~~~~l~~l~l 180 (183)
+++|. +++..+..+..+++|+.|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 66665 44444445555566665554
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1e-16 Score=105.28 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=106.2
Q ss_pred cccccccccEEEccCCCCCCCCCCCCCC-CCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCcc
Q psy13911 29 LNNENRYLEKLYLTSNALTDIGPLNKCR-QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR 107 (183)
Q Consensus 29 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~ 107 (183)
.+..+.+++.|++++|+++.++.+..+. +|+.|++++|.++.+ ..+..+++|+++++++|.++.++...+..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3456788999999999988876566555 899999999998887 3488889999999999999988876645788999
Q ss_pred EEEeeCCcCCCCC---CccCCCcccEEeccCcccccccCC----CCCCCCccEEEcCCCCcee
Q psy13911 108 VLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLN----TLIPKQLQYLDVSGNPRLH 163 (183)
Q Consensus 108 ~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~l~~l~l~~n~~~~ 163 (183)
.|++++|.++.+| .+..+++|+.+++++|.++.++.. ....++++.|++++|....
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999888766 367788899999999988876543 2223888999998887643
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=4.3e-18 Score=124.78 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=73.7
Q ss_pred ccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccccCccccc----CC---------CCCcEEEecCCcC
Q psy13911 32 ENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITSLPDNCIS----AW---------SEMEELVLSGNGI 92 (183)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~~~~~----~~---------~~L~~l~l~~~~l 92 (183)
.+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+. .+ ++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 445555555555555442 2334455555555555555422221111 11 4555666655555
Q ss_pred c--cCCC--CCCCCCCCccEEEeeCCcCCC------CC-CccCCCcccEEeccCccccc-----ccCCCCCCCCccEEEc
Q psy13911 93 S--SLPN--TIPQSWPHLRVLRLHSNHLTS------CP-TLYLSSSLRVLDLSYNHLER-----LNLNTLIPKQLQYLDV 156 (183)
Q Consensus 93 ~--~~~~--~~~~~~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~l~l~~n~l~~-----~~~~~~~~~~l~~l~l 156 (183)
+ .++. ..+..+++|+.|++++|.++. .+ .+..+++|+.|++++|.+++ ++......++|++|++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 4 1211 111134566666666666652 22 45556667777777666632 2211111266777777
Q ss_pred CCCCceeeC----CCCc--CCCcceeEEEEE
Q psy13911 157 SGNPRLHVD----PNHF--KSYRSYVRVYIQ 181 (183)
Q Consensus 157 ~~n~~~~~~----~~~~--~~~~~l~~l~l~ 181 (183)
++|.+++.. +..+ ..+++|+.|+|+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 777665541 2333 226666666653
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=7.4e-15 Score=108.01 Aligned_cols=169 Identities=17% Similarity=0.236 Sum_probs=106.1
Q ss_pred HHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 5 LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
.+|..|++|+.+++.++.+..++.....+.+|+.+.+..+ +..+ .+|.++++|+.+.+..+ ++.+...+|.. ++|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 3567778888888877777777633223567777777643 5544 56777777877777653 55555555555 566
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCC-----CCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEE
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-----SCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYL 154 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l 154 (183)
+.+.+ .+.++.++..+|..+.+|+.+.+.++.+. .++ .|.+|++|+.+.+. +.++.++..++.. .+|+.+
T Consensus 251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEE
T ss_pred cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEE
Confidence 66666 34455666666666777777777666543 222 36666666666665 3466666666655 666666
Q ss_pred EcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 155 DVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 155 ~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
.+..+ ++.+...+|.+| +|+.+++
T Consensus 329 ~lp~~-l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 329 TIPAN-VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp EECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred EECcc-ccEEcHHhCCCC-CCCEEEE
Confidence 66443 556666666666 6666655
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=3.8e-17 Score=128.33 Aligned_cols=112 Identities=26% Similarity=0.315 Sum_probs=63.0
Q ss_pred ccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCc
Q psy13911 28 SLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHL 106 (183)
Q Consensus 28 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L 106 (183)
..+..++.|+.|++++|.+..+ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|.++.+|..+. .+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLPAELG-SCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCCSSGG-GGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccChhhc-CCCCC
Confidence 4455556666666666666555 334455666666666666664443 25556666666666666665555443 55666
Q ss_pred cEEEeeCCcCCCCC-CccCCCcccEEeccCcccccc
Q psy13911 107 RVLRLHSNHLTSCP-TLYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 107 ~~L~l~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~~ 141 (183)
+.|++++|.++.+| .++.+++|+.|++++|.+++.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 66666666666555 355556666666666655543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=2.3e-16 Score=100.78 Aligned_cols=123 Identities=19% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCCEEeeCCcccc-ccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCC-CCC-ccCCCcccEEe
Q psy13911 56 RQLNTLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS-CPT-LYLSSSLRVLD 132 (183)
Q Consensus 56 ~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~l~ 132 (183)
++++.|++++|.++ ...+..+..+++|+.+++++|.++.+ .. +..+++|+.|++++|.+++ +|. +..+++|+.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 12222345566666666666666655 22 2356667777777776666 443 34466777777
Q ss_pred ccCcccccccC-CCCC-CCCccEEEcCCCCceeeCC---CCcCCCcceeEEEE
Q psy13911 133 LSYNHLERLNL-NTLI-PKQLQYLDVSGNPRLHVDP---NHFKSYRSYVRVYI 180 (183)
Q Consensus 133 l~~n~l~~~~~-~~~~-~~~l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l 180 (183)
+++|.+++++. ..+. .++|++|++++|++++.++ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 77777766531 2222 2677777777777776654 46677777777665
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.4e-16 Score=125.06 Aligned_cols=115 Identities=20% Similarity=0.292 Sum_probs=99.6
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCC
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSE 81 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 81 (183)
++..+..++.|+.|++++|.+..++..+..+++|+.|++++|.++.+ ..+.++++|+.|++++|.++.++.. +..+++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS-GGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh-hcCCCC
Confidence 35668889999999999999999997777999999999999999977 5688999999999999999977554 889999
Q ss_pred CcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911 82 MEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119 (183)
Q Consensus 82 L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 119 (183)
|++|++++|.++.+|..+. .+++|+.|++++|.+++.
T Consensus 295 L~~L~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CSEEECCSSCCCCCCSSTT-SCTTCCCEECTTSCCCSH
T ss_pred CCEEECCCCCCCccChhhh-cCCCccEEeCCCCccCCC
Confidence 9999999999999988854 899999999999999864
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=2e-14 Score=93.72 Aligned_cols=106 Identities=23% Similarity=0.340 Sum_probs=87.9
Q ss_pred CCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 12 KLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
..+.++++++.+..+|..+ .++++.|++++|+++.+ ..|..+++|+.|++++|.++.+++..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3578899999999888655 37888999999998888 4578888999999999998888887778888899999999
Q ss_pred CcCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911 90 NGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119 (183)
Q Consensus 90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 119 (183)
|.++.++...+..+++|+.|++++|.++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 988888887666788889999988877643
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.4e-14 Score=103.96 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=89.9
Q ss_pred CCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCcc-EEEeeCCcCCCCC--CccCCCcccEE
Q psy13911 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR-VLRLHSNHLTSCP--TLYLSSSLRVL 131 (183)
Q Consensus 55 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~--~~~~~~~L~~l 131 (183)
+++|+.+++++|.++.++..+|..+.+|+.+++..+ ++.++..+|+.+.+|+ .+.+.+ .++.++ .|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999999999999999999999999998 8899999998999999 999988 677664 69999999999
Q ss_pred eccCcccccccCCCCCC-CCccEEEc
Q psy13911 132 DLSYNHLERLNLNTLIP-KQLQYLDV 156 (183)
Q Consensus 132 ~l~~n~l~~~~~~~~~~-~~l~~l~l 156 (183)
+++.|.++.++..++.. ++|+.+..
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999888876 68887753
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=3.4e-14 Score=92.98 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=85.9
Q ss_pred CcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCC
Q psy13911 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90 (183)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 90 (183)
-+.++++++.+..+|..+. ++|+.|++++|+++.+ ..+..+++|+.|++++|.++.+++..+..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3678888888888886553 7888899999888887 45778888888888888888888777778888888888888
Q ss_pred cCccCCCCCCCCCCCccEEEeeCCcCCCC
Q psy13911 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSC 119 (183)
Q Consensus 91 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 119 (183)
.++.++...+..+++|+.|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88888877666788888888888877754
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=5.9e-17 Score=121.10 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=64.3
Q ss_pred HhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC------CCCCCC-CCCCEEeeCCcccccc--
Q psy13911 6 FLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI------GPLNKC-RQLNTLHVAYNAITSL-- 71 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l-~~L~~l~l~~~~~~~~-- 71 (183)
.+..+++|+.|++++|.+.. ++..+..+++|++|++++|.+... ..+... ++|++|++++|.+...
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 35556666666666666552 334445556666666666655442 111111 1466666666655531
Q ss_pred --CcccccCCCCCcEEEecCCcCccC-----CCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCccc
Q psy13911 72 --PDNCISAWSEMEELVLSGNGISSL-----PNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYNHL 138 (183)
Q Consensus 72 --~~~~~~~~~~L~~l~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n~l 138 (183)
.+..+..+++|+++++++|.++.. ........++|++|++++|.++... .+..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 133355555666666666655411 1111112334555555555544321 123334455555554444
Q ss_pred cc
Q psy13911 139 ER 140 (183)
Q Consensus 139 ~~ 140 (183)
++
T Consensus 183 ~~ 184 (461)
T 1z7x_W 183 NE 184 (461)
T ss_dssp HH
T ss_pred ch
Confidence 33
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=5.6e-17 Score=121.23 Aligned_cols=127 Identities=22% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCCCCEEeeCCcccccc----CcccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCCC-----
Q psy13911 55 CRQLNTLHVAYNAITSL----PDNCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCP----- 120 (183)
Q Consensus 55 l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~----- 120 (183)
+++|+.|++++|.++.. .+..+..+++|+++++++|.++. +........++|+.|++++|.++...
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 44555555555544431 11223345555555555555541 11111112245666666666655421
Q ss_pred -CccCCCcccEEeccCcccccccCCCCC------CCCccEEEcCCCCcee----eCCCCcCCCcceeEEEEE
Q psy13911 121 -TLYLSSSLRVLDLSYNHLERLNLNTLI------PKQLQYLDVSGNPRLH----VDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 121 -~~~~~~~L~~l~l~~n~l~~~~~~~~~------~~~l~~l~l~~n~~~~----~~~~~~~~~~~l~~l~l~ 181 (183)
.+..+++|++|++++|.+++.+...+. .+++++|++++|.+++ ..+..+..+++|+.|+++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 134456777777777777665433221 2577777777777764 335556667777777664
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=2.4e-13 Score=99.96 Aligned_cols=145 Identities=10% Similarity=0.157 Sum_probs=85.1
Q ss_pred ccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCcc
Q psy13911 30 NNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR 107 (183)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~ 107 (183)
|.++.+|+.++++.+.++.+ .+|. +.+|+.+.+.. .+..+...+|..+.+|+.+++..+ ++.++..+|.. .+|+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 44444444444444444433 2232 34444444442 244444455555555555555442 44555555533 5566
Q ss_pred EEEeeCCcCCCCC--CccCCCcccEEeccCcccc-----cccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEE
Q psy13911 108 VLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLE-----RLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVY 179 (183)
Q Consensus 108 ~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~-----~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 179 (183)
.+.+.+ .++.++ .|..|++|+.+.+.+|.+. .++..++.. .+|+.+.+. +.++.+...+|.+|++|+.++
T Consensus 252 ~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 252 TVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred EEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence 666633 344443 4778888888888776554 566666665 788888888 448888888898888888887
Q ss_pred E
Q psy13911 180 I 180 (183)
Q Consensus 180 l 180 (183)
|
T Consensus 330 l 330 (401)
T 4fdw_A 330 I 330 (401)
T ss_dssp E
T ss_pred E
Confidence 6
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=2e-18 Score=115.45 Aligned_cols=131 Identities=24% Similarity=0.238 Sum_probs=75.3
Q ss_pred hcCCCCcEEEccCCcCCC-------ccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcccccCCC
Q psy13911 8 QNSSKLKVLNISKNCLKM-------LPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWS 80 (183)
Q Consensus 8 ~~~~~L~~l~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 80 (183)
.....++.+++..+.+.. +|..+..+++|+.|++++|.++.++.+..+++|+.|++++|.+..++. .+..++
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~ 93 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVAD 93 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCC
Confidence 344444444444444432 333566667777777777666665555556666666666666665443 244456
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC---CccCCCcccEEeccCcccccc
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~l~l~~n~l~~~ 141 (183)
+|+++++++|.++.++ .+ ..+++|+.|++++|.+++++ .+..+++|+++++++|.+++.
T Consensus 94 ~L~~L~L~~N~l~~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 94 TLEELWISYNQIASLS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HCSEEEEEEEECCCHH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCEEECcCCcCCcCC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666666666666554 22 24566666666666666543 245556666666666665443
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=4.7e-14 Score=107.99 Aligned_cols=151 Identities=23% Similarity=0.196 Sum_probs=114.6
Q ss_pred HHHHhhcCCCCcEEE-ccCCcCCCccc------cccc--cccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCc
Q psy13911 3 LELFLQNSSKLKVLN-ISKNCLKMLPS------LNNE--NRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPD 73 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~-l~~~~~~~~~~------~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 73 (183)
++..++.+++|+.|+ +..+.+..++. .+.. ...|+.|++++|.++.++.+..+++|+.|++++|.++.+|.
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccch
Confidence 355667777777777 45444333221 1111 23588999999999888668889999999999999997765
Q ss_pred ccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCC--C-CccCCCcccEEeccCcccccccCCCCC---
Q psy13911 74 NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC--P-TLYLSSSLRVLDLSYNHLERLNLNTLI--- 147 (183)
Q Consensus 74 ~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~l~l~~n~l~~~~~~~~~--- 147 (183)
.+..+++|+.|++++|.++.+| .+ ..+++|+.|++++|.++++ | .++.+++|+.|++++|.+++.++....
T Consensus 481 -~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 481 -ALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp -GGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred -hhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 5889999999999999999887 44 3889999999999999987 5 488889999999999999887654322
Q ss_pred -CCCccEEEc
Q psy13911 148 -PKQLQYLDV 156 (183)
Q Consensus 148 -~~~l~~l~l 156 (183)
.++|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 167777753
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=2.7e-13 Score=88.36 Aligned_cols=105 Identities=21% Similarity=0.216 Sum_probs=87.7
Q ss_pred cccEEEccCCCCCCCC-CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeC
Q psy13911 35 YLEKLYLTSNALTDIG-PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113 (183)
Q Consensus 35 ~L~~L~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 113 (183)
..+.++++++.++.++ .+ .++++.|++++|.++.+++..+..+++|++|++++|.++.++...+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4578899998888873 33 37889999999999988888788899999999999999988888777889999999999
Q ss_pred CcCCCCCC--ccCCCcccEEeccCcccccc
Q psy13911 114 NHLTSCPT--LYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 114 ~~~~~~~~--~~~~~~L~~l~l~~n~l~~~ 141 (183)
|.+++++. +..+++|+.|++++|.++-.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99988763 77888999999999877543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=4.1e-13 Score=87.86 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=87.2
Q ss_pred ccEEEccCCCCCCCC-CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911 36 LEKLYLTSNALTDIG-PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114 (183)
Q Consensus 36 L~~L~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 114 (183)
-+.++++++++..++ .+ .++|+.|++++|.++.+++..+..+++|+.|++++|.++.++...+..+++|+.|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 367888988888773 33 378999999999999888877888999999999999999998887668899999999999
Q ss_pred cCCCCCC--ccCCCcccEEeccCcccccc
Q psy13911 115 HLTSCPT--LYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~~ 141 (183)
.+++++. +..+++|+.+++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9988763 77888999999999987654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4.4e-17 Score=108.94 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=97.1
Q ss_pred CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCCCccCCCcccE
Q psy13911 51 PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130 (183)
Q Consensus 51 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~ 130 (183)
.+..+++|+.|++++|.+..++ .+..+++|+++++++|.++.+|.... .+++|+.|++++|.++++|.+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~L~~N~l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDA-VADTLEELWISYNQIASLSGIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHH-HHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhh-cCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence 4667888999999988888865 47788889999999998887765433 56788999999998888777777788999
Q ss_pred EeccCcccccccC-CCCC-CCCccEEEcCCCCceeeCCC----------CcCCCcceeEEE
Q psy13911 131 LDLSYNHLERLNL-NTLI-PKQLQYLDVSGNPRLHVDPN----------HFKSYRSYVRVY 179 (183)
Q Consensus 131 l~l~~n~l~~~~~-~~~~-~~~l~~l~l~~n~~~~~~~~----------~~~~~~~l~~l~ 179 (183)
|++++|.+++++. ..+. .++|++|++++|++.+..|. .+..+++|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999998887654 2222 37889999999988776444 266777777765
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.4e-12 Score=94.12 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=92.1
Q ss_pred cEEEccCC-cCCCccccccccccccEEEccC-CCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 14 KVLNISKN-CLKMLPSLNNENRYLEKLYLTS-NALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 14 ~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
..++.+++ .+..+|. +..+++|+.|++++ |.++.+ ..|.++++|+.|++++|.++.+++..|..+++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45788888 8999999 89999999999996 999988 5689999999999999999999998899999999999999
Q ss_pred CcCccCCCCCCCCCCCccEEEeeCCcCCC
Q psy13911 90 NGISSLPNTIPQSWPHLRVLRLHSNHLTS 118 (183)
Q Consensus 90 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 118 (183)
|.++.+|...+..+. |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999988874444 9999999998874
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=5.2e-12 Score=91.17 Aligned_cols=103 Identities=24% Similarity=0.207 Sum_probs=85.3
Q ss_pred cEEEccCC-CCCCCCCCCCCCCCCEEeeCC-ccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC
Q psy13911 37 EKLYLTSN-ALTDIGPLNKCRQLNTLHVAY-NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114 (183)
Q Consensus 37 ~~L~l~~~-~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 114 (183)
..++++++ +++.++.+..+++|+.|++++ |.++.+++..|..+++|+.|++++|.++.++...+..+++|+.|++++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 35678887 788884488888999999996 9999988888999999999999999999888877768899999999999
Q ss_pred cCCCCCC--ccCCCcccEEeccCccccc
Q psy13911 115 HLTSCPT--LYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 115 ~~~~~~~--~~~~~~L~~l~l~~n~l~~ 140 (183)
.++++|. +..+ .|+.|++.+|.+.-
T Consensus 91 ~l~~~~~~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred ccceeCHHHcccC-CceEEEeeCCCccC
Confidence 9998763 4443 49999999987763
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.1e-14 Score=106.06 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=111.3
Q ss_pred CCCCcEEEccCCcCCCcc-cc----cc-ccccccEEEccCCCCCCC--CCC-CCCCCCCEEeeCCccccccCcccc----
Q psy13911 10 SSKLKVLNISKNCLKMLP-SL----NN-ENRYLEKLYLTSNALTDI--GPL-NKCRQLNTLHVAYNAITSLPDNCI---- 76 (183)
Q Consensus 10 ~~~L~~l~l~~~~~~~~~-~~----~~-~~~~L~~L~l~~~~~~~~--~~~-~~l~~L~~l~l~~~~~~~~~~~~~---- 76 (183)
.+.++.+++++|.++... .. +. ..++|+.|++++|.++.. ..+ ..+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999999887532 22 22 236899999999988764 222 235678999999998875433333
Q ss_pred -cCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCcccccccCC
Q psy13911 77 -SAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYNHLERLNLN 144 (183)
Q Consensus 77 -~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n~l~~~~~~ 144 (183)
...++|++|++++|.++. +...+. ..++|++|++++|.+++.. .+..+++|+.|++++|.+++.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 346789999999998863 222222 5678999999999887531 355667899999999998876543
Q ss_pred CCCC-----CCccEEEcCCCCceeeCCCCc
Q psy13911 145 TLIP-----KQLQYLDVSGNPRLHVDPNHF 169 (183)
Q Consensus 145 ~~~~-----~~l~~l~l~~n~~~~~~~~~~ 169 (183)
.+.. ++|++|++++|.+++.....+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3322 789999999999876544333
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=4.3e-13 Score=103.14 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=77.5
Q ss_pred HHHhhcCCCCcEEEccCCcCCCc-----cccccccccccEEEccCCCCCCC------CCCCCCCCCCEEeeCCccccccC
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKML-----PSLNNENRYLEKLYLTSNALTDI------GPLNKCRQLNTLHVAYNAITSLP 72 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~l~l~~~~~~~~~ 72 (183)
......+++|++|++.+|.+.+. +.....+++|+.|++++|.++.. ..+.++++|+.|++.+|.+..++
T Consensus 157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~ 236 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236 (592)
T ss_dssp HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH
T ss_pred HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH
Confidence 34455778888888888766532 23445677888888888777633 22346778888888887776644
Q ss_pred cccccCCCCCcEEEecCCcCc----cCCCCCCCCCCCccEEEeeCCcCCCCCC-ccCCCcccEEeccCccccc
Q psy13911 73 DNCISAWSEMEELVLSGNGIS----SLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLSSSLRVLDLSYNHLER 140 (183)
Q Consensus 73 ~~~~~~~~~L~~l~l~~~~l~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~l~l~~n~l~~ 140 (183)
..+..+++|+.++++..... ...... ..+++|+.++++++....++. +..+++|++|++++|.+++
T Consensus 237 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 237 -GFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp -HHHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred -HHHhhhhHHHhhcccccccccchHHHHHHh-hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 33666677777777642111 111112 244555555555543333332 3344556666665555433
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=5.4e-13 Score=102.57 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHhhcCCCCcEEEccCCcCCC-----ccccccccccccEEEccCCCCCCC----------------------------C
Q psy13911 4 ELFLQNSSKLKVLNISKNCLKM-----LPSLNNENRYLEKLYLTSNALTDI----------------------------G 50 (183)
Q Consensus 4 ~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----------------------------~ 50 (183)
+..+..++.|+.|+++++.+.. ++..+..+++|+.|++++|.+.+. .
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 3445555666666666555542 223334455555555555543322 2
Q ss_pred CCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCc
Q psy13911 51 PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93 (183)
Q Consensus 51 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 93 (183)
.+..+++|+.+.+.++....++ ..+..+++|++|++.+|.++
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGG-GGGGGGGGCCEEEETTCCCC
T ss_pred HhhccccccccCccccchhHHH-HHHhhcCCCcEEecCCCcCC
Confidence 3344455555555543322222 23455666777777766643
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.17 E-value=9e-10 Score=80.89 Aligned_cols=172 Identities=16% Similarity=0.243 Sum_probs=110.8
Q ss_pred HHhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc---------------
Q psy13911 5 LFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN--------------- 66 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~--------------- 66 (183)
.+|..|++|+.+.+.++ +..++ ..|.++.+|+.+.+..+ ++.+ .+|.++..|+.+.+..+
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence 45778888888888754 34444 55667777777777553 2222 33444444433332221
Q ss_pred ------cccccCcccccCCCCCcEEEecCCcCc--------------------cCCCCCCCCCCCccEEEeeCCcCCCCC
Q psy13911 67 ------AITSLPDNCISAWSEMEELVLSGNGIS--------------------SLPNTIPQSWPHLRVLRLHSNHLTSCP 120 (183)
Q Consensus 67 ------~~~~~~~~~~~~~~~L~~l~l~~~~l~--------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~ 120 (183)
.+..+...++..+..++.+.+..+... .++...+..+.+|+.+.+.++ ++.++
T Consensus 234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp EEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEEC
T ss_pred eEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceec
Confidence 122333444555666666665443211 233445556777888877654 55443
Q ss_pred --CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEEE
Q psy13911 121 --TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181 (183)
Q Consensus 121 --~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 181 (183)
+|.+|.+|+.+++.. .++.++..++.. .+|+.+.+..+ ++.+...+|.+|.+|+.+++.
T Consensus 313 ~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 588888999999864 488888888876 88999999876 888888999999999998874
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=7.6e-13 Score=96.45 Aligned_cols=151 Identities=20% Similarity=0.171 Sum_probs=106.8
Q ss_pred CCCCcEEEccCCcCCC--ccccccccccccEEEccCCCCCCC--CC----C-CCCCCCCEEeeCCccccccCc----ccc
Q psy13911 10 SSKLKVLNISKNCLKM--LPSLNNENRYLEKLYLTSNALTDI--GP----L-NKCRQLNTLHVAYNAITSLPD----NCI 76 (183)
Q Consensus 10 ~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~----~-~~l~~L~~l~l~~~~~~~~~~----~~~ 76 (183)
.+.|+.|++++|.+.. +......+++|+.|++++|.++.. .. + ...++|+.|++++|.++.... ..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3799999999999875 334445567899999999998765 22 2 357899999999999875322 234
Q ss_pred cCCCCCcEEEecCCcCccC-----CCCCCCCCCCccEEEeeCCcCCCCC------CccCCCcccEEeccCcccccccCCC
Q psy13911 77 SAWSEMEELVLSGNGISSL-----PNTIPQSWPHLRVLRLHSNHLTSCP------TLYLSSSLRVLDLSYNHLERLNLNT 145 (183)
Q Consensus 77 ~~~~~L~~l~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~l~l~~n~l~~~~~~~ 145 (183)
...++|++|++++|.++.. ...+. ..++|+.|++++|.++... .+..+++|++|++++|.+++.+...
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 6788999999999998732 22222 5678999999999998632 2445688999999999998765443
Q ss_pred CCC---CC---ccEEE--cCCCCc
Q psy13911 146 LIP---KQ---LQYLD--VSGNPR 161 (183)
Q Consensus 146 ~~~---~~---l~~l~--l~~n~~ 161 (183)
+.. .. ++.+. +..+.+
T Consensus 259 L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 259 LRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHCC------CEEECCCC----C
T ss_pred HHHHhcCCCccchhhHhhhcCCcc
Confidence 321 12 56665 555544
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=1.5e-12 Score=100.10 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=19.9
Q ss_pred CCccEEEcCCCCceeeCC-CCcCCCcceeEEEEE
Q psy13911 149 KQLQYLDVSGNPRLHVDP-NHFKSYRSYVRVYIQ 181 (183)
Q Consensus 149 ~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~ 181 (183)
++|++|++++|.+++... ..+..+++|+.|++.
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 677777777777554221 224566677766654
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.06 E-value=7.7e-13 Score=101.74 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCcccEEeccCcccccccCCCCC--CCCccEEEcCCCCceeeCCC-CcCCCcceeEEEEE
Q psy13911 125 SSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNPRLHVDPN-HFKSYRSYVRVYIQ 181 (183)
Q Consensus 125 ~~~L~~l~l~~n~l~~~~~~~~~--~~~l~~l~l~~n~~~~~~~~-~~~~~~~l~~l~l~ 181 (183)
+++|+.|++++|.+++.....+. .++|++|++++|++++.... ....+++|+.|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 56778888887777665433321 27888888888887554333 44557888888775
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=1.7e-08 Score=73.60 Aligned_cols=138 Identities=14% Similarity=0.250 Sum_probs=85.2
Q ss_pred ccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEE
Q psy13911 32 ENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109 (183)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L 109 (183)
....++.+.+..+ +..+ .++.++..|+.+.+..+ ++.+...++..+.+++.+.+.. .+..++...+..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence 3444555555432 2222 45666677777776654 5555566666677777777643 3556666666677777777
Q ss_pred EeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcc
Q psy13911 110 RLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174 (183)
Q Consensus 110 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~ 174 (183)
.+.++.++.++ .|.+|.+|+.+.+.. .++.++..++.. .+|+.+.+..+ ++.+...+|.+|..
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 77766666553 467777777777753 366666666665 66777777544 66666677777643
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=7.3e-09 Score=75.59 Aligned_cols=163 Identities=14% Similarity=0.190 Sum_probs=118.2
Q ss_pred HhhcCCCCcEEEccCCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCccccccCcccccCCCCC
Q psy13911 6 FLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEM 82 (183)
Q Consensus 6 ~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 82 (183)
++..+..++.+.+..+ +..+. ..+.++..|+.+.+..+ ++.+ .+|.++.+|+.+.+.. .+..+...+|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 3456667777777544 44444 56778889999999765 5555 6788999999999875 4777788889999999
Q ss_pred cEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCCCCccEEEcCCCC
Q psy13911 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160 (183)
Q Consensus 83 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 160 (183)
+.+.+.++.++.++..+|..+.+|+.+.+..+ ++.++ +|.+|.+|+.+.+..+ ++.++..++...++..+.. .
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~~~~---~ 363 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITKYPT---W 363 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCCCCT---T
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCcCcc---c
Confidence 99999999999999999989999999999765 66554 6899999999998654 7888877876655443321 2
Q ss_pred ceeeCCCCcCCCccee
Q psy13911 161 RLHVDPNHFKSYRSYV 176 (183)
Q Consensus 161 ~~~~~~~~~~~~~~l~ 176 (183)
+....-..++.|.+|+
T Consensus 364 ~~~~~~~~f~~~~~Lk 379 (379)
T 4h09_A 364 LSKGNNGDYGIFTKIK 379 (379)
T ss_dssp CEECTTSCEEC-----
T ss_pred cccCceeehhhhhhcC
Confidence 3334345566666553
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=3.4e-10 Score=82.07 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=100.5
Q ss_pred HHhhcCCCCcEEEccCCcCC----------CccccccccccccEEEccCCCCCCCCCCCCCCCCCEEeeCCccccccCcc
Q psy13911 5 LFLQNSSKLKVLNISKNCLK----------MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDN 74 (183)
Q Consensus 5 ~~~~~~~~L~~l~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 74 (183)
.+...+++|+.|.+...... .+...+..+++|+.|.++++.-.....+ .+++|+.|.+..+.+..-...
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHH
Confidence 34557789999988654321 1334456678999999987731122333 378899999988776532222
Q ss_pred cc--cCCCCCcEEEecCC--c------CccCCCCCC-CCCCCccEEEeeCCcCCCC-----CCccCCCcccEEeccCccc
Q psy13911 75 CI--SAWSEMEELVLSGN--G------ISSLPNTIP-QSWPHLRVLRLHSNHLTSC-----PTLYLSSSLRVLDLSYNHL 138 (183)
Q Consensus 75 ~~--~~~~~L~~l~l~~~--~------l~~~~~~~~-~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~l~l~~n~l 138 (183)
.+ ..+++|+.|++..+ . +..+..... ..+++|+.|++.+|.+... .....++.|+.|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 23 25788999988531 1 111111111 2478999999998887641 1124567899999999988
Q ss_pred ccccCCCCC-----CCCccEEEcCCCCcee
Q psy13911 139 ERLNLNTLI-----PKQLQYLDVSGNPRLH 163 (183)
Q Consensus 139 ~~~~~~~~~-----~~~l~~l~l~~n~~~~ 163 (183)
++.+...+. .++|+.|++++|.+++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 875432221 1789999999887764
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.96 E-value=2.7e-08 Score=72.99 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=31.4
Q ss_pred ccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 122 LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 122 ~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
|.+|.+|+.+.+.. .++.++..++.. .+|+.+.+..+ ++.+...+|.+|.+|+.+++
T Consensus 307 F~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 307 FAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred ecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 45555555555543 255555555554 55666666433 55555556666666666554
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.95 E-value=4.1e-08 Score=72.06 Aligned_cols=122 Identities=11% Similarity=0.252 Sum_probs=64.1
Q ss_pred CCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcCCCCC--CccCCCccc
Q psy13911 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLR 129 (183)
Q Consensus 52 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~ 129 (183)
|.++..|+.+.+..+ ...+...+|..+..|+.+.+. +.++.++...|+.+.+|+.+.+.++ ++.++ +|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 334444444444332 122333444455555555553 3455566666666777777777653 44432 466777777
Q ss_pred EEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEEEE
Q psy13911 130 VLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYI 180 (183)
Q Consensus 130 ~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 180 (183)
.+.+.. .++.++..++.. .+|+.+++.++.... ..+..+..|+.+.+
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred EEEECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 777743 366666666655 677777776654321 24455666665554
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.89 E-value=2.8e-08 Score=72.96 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=99.4
Q ss_pred ccccccccEEEccCCCCCCC-CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecCCcCccCCCCCCCCCCCccE
Q psy13911 30 NNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRV 108 (183)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~L~~ 108 (183)
+..+..++.+.+..+...-. .+|..+..++.+...... ++..++..+.+|+.+.+..+ ++.++..++..+.+|+.
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 33444555555544322111 445555566555554432 34455778888999988654 77888888889999999
Q ss_pred EEeeCCcCCCCC--CccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCceeeCCCCcCCCcceeEE
Q psy13911 109 LRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRV 178 (183)
Q Consensus 109 L~l~~~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l 178 (183)
+.+.++ ++.++ +|.+|.+|+.+.+..+ ++.++..++.. .+|+.+++..+ ++.+ ..+|.+|++|+.+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 999764 66554 6899999999999776 88888888877 89999999765 4444 4689999999875
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=8.6e-10 Score=72.69 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=64.2
Q ss_pred ccccccccEEEccCC-CCCCC------CCCCCCCCCCEEeeCCccccccC----cccccCCCCCcEEEecCCcCcc----
Q psy13911 30 NNENRYLEKLYLTSN-ALTDI------GPLNKCRQLNTLHVAYNAITSLP----DNCISAWSEMEELVLSGNGISS---- 94 (183)
Q Consensus 30 ~~~~~~L~~L~l~~~-~~~~~------~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~---- 94 (183)
+...+.|++|++++| .+... ..+...++|++|++++|.+.+.. ...+...++|++|++++|.++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555666666665 55442 23344566666666666665321 1223444667777777776652
Q ss_pred -CCCCCCCCCCCccEEEe--eCCcCCCCC------CccCCCcccEEeccCcccccc
Q psy13911 95 -LPNTIPQSWPHLRVLRL--HSNHLTSCP------TLYLSSSLRVLDLSYNHLERL 141 (183)
Q Consensus 95 -~~~~~~~~~~~L~~L~l--~~~~~~~~~------~~~~~~~L~~l~l~~n~l~~~ 141 (183)
+...+. ..+.|++|++ ++|.++... .+...++|++|++++|.+...
T Consensus 112 ~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 222222 4567888888 667776421 244557788888888876543
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=6.8e-09 Score=75.30 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=104.0
Q ss_pred HHHHhhcCCCCcEEEccCCcCCCccccccccccccEEEccCCCCCCC--CCC--CCCCCCCEEeeCC--cc------ccc
Q psy13911 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPL--NKCRQLNTLHVAY--NA------ITS 70 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~--~~l~~L~~l~l~~--~~------~~~ 70 (183)
+..++..++.|+.|.+.++.-..++. + ..++|+.|++..+.+... ..+ ..+++|+.|++.. +. +..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 56778899999999998873223443 3 378999999998887654 222 3689999998853 21 111
Q ss_pred cCcccc--cCCCCCcEEEecCCcCccCC----CCCCCCCCCccEEEeeCCcCCCC-----C-CccCCCcccEEeccCccc
Q psy13911 71 LPDNCI--SAWSEMEELVLSGNGISSLP----NTIPQSWPHLRVLRLHSNHLTSC-----P-TLYLSSSLRVLDLSYNHL 138 (183)
Q Consensus 71 ~~~~~~--~~~~~L~~l~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~l~l~~n~l 138 (183)
+.+ .+ ..+++|++|++.+|.+.... .... .+++|+.|+++.|.+++. + .+..+++|+.|+++.|.+
T Consensus 242 l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~-~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 242 FRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD-ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS-SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc-cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 111 12 34789999999998876211 1111 468999999999988762 1 235678999999999988
Q ss_pred ccccCCCCCCCCccEEEcCCCC
Q psy13911 139 ERLNLNTLIPKQLQYLDVSGNP 160 (183)
Q Consensus 139 ~~~~~~~~~~~~l~~l~l~~n~ 160 (183)
++.....+...--..++++.++
T Consensus 320 ~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHHCCSEEECCSBC
T ss_pred CHHHHHHHHHHcCCEEEecCCc
Confidence 8754433322113568888776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=4.8e-09 Score=69.10 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=81.9
Q ss_pred CCCCCCCCCEEeeCCc-ccccc----CcccccCCCCCcEEEecCCcCcc-----CCCCCCCCCCCccEEEeeCCcCCCC-
Q psy13911 51 PLNKCRQLNTLHVAYN-AITSL----PDNCISAWSEMEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSC- 119 (183)
Q Consensus 51 ~~~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~~~~- 119 (183)
.+...+.|++|++++| .+... ....+...++|++|++++|.+.. +...+. ..++|++|++++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHH
Confidence 3556789999999998 88742 12335667899999999998872 222222 457899999999998862
Q ss_pred -----CCccCCCcccEEec--cCcccccccCCCCCC-----CCccEEEcCCCCcee
Q psy13911 120 -----PTLYLSSSLRVLDL--SYNHLERLNLNTLIP-----KQLQYLDVSGNPRLH 163 (183)
Q Consensus 120 -----~~~~~~~~L~~l~l--~~n~l~~~~~~~~~~-----~~l~~l~l~~n~~~~ 163 (183)
..+...++|++|++ ++|.+++.+...+.. +.|++|++++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 24666778999999 889988765433322 789999999998753
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=1.5e-07 Score=65.33 Aligned_cols=61 Identities=31% Similarity=0.364 Sum_probs=30.8
Q ss_pred cCCCCcEEEccCCcCCCcc---ccccccccccEEEccCCCCCCCCCCCCCC--CCCEEeeCCcccc
Q psy13911 9 NSSKLKVLNISKNCLKMLP---SLNNENRYLEKLYLTSNALTDIGPLNKCR--QLNTLHVAYNAIT 69 (183)
Q Consensus 9 ~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~L~~l~l~~~~~~ 69 (183)
.++.|+.|++++|.+..++ ..+..+++|+.|++++|.++....+..+. +|+.|++.+|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 4555556666655555433 33445555555555555555542222222 5555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=4e-07 Score=63.17 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=52.0
Q ss_pred CCCCccEEEeeCCcCCCCCC----ccCCCcccEEeccCcccccccC-CCCCCCCccEEEcCCCCceeeCC-------CCc
Q psy13911 102 SWPHLRVLRLHSNHLTSCPT----LYLSSSLRVLDLSYNHLERLNL-NTLIPKQLQYLDVSGNPRLHVDP-------NHF 169 (183)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~~~-------~~~ 169 (183)
.+++|+.|++++|.+++++. +..+++|+.|++++|.++++.. ..+...+|++|++++|++.+..+ ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 35778888888888887643 3467888888888888877621 12211378888888888765322 235
Q ss_pred CCCcceeEEE
Q psy13911 170 KSYRSYVRVY 179 (183)
Q Consensus 170 ~~~~~l~~l~ 179 (183)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5667776665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=1.6e-07 Score=60.94 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=57.2
Q ss_pred CCCcEEEecCCcCccCCCCCCCCCCCccEEEeeCC-cCCCC--CCccC----CCcccEEeccCc-ccccccCCCCCC-CC
Q psy13911 80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSC--PTLYL----SSSLRVLDLSYN-HLERLNLNTLIP-KQ 150 (183)
Q Consensus 80 ~~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~----~~~L~~l~l~~n-~l~~~~~~~~~~-~~ 150 (183)
..|++++++++.++.........+++|++|++++| .+++. ..+.. +++|++|++++| .+++.+...+.. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46888999988876432222247888999999988 46642 22333 347889999887 477765554443 88
Q ss_pred ccEEEcCCCC-cee
Q psy13911 151 LQYLDVSGNP-RLH 163 (183)
Q Consensus 151 l~~l~l~~n~-~~~ 163 (183)
|++|++++++ +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 8999988875 443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=3.5e-07 Score=59.29 Aligned_cols=32 Identities=6% Similarity=0.173 Sum_probs=17.2
Q ss_pred cccEEEccCCCCCCC--CCCCCCCCCCEEeeCCc
Q psy13911 35 YLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN 66 (183)
Q Consensus 35 ~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~ 66 (183)
.|+.|++++|.++.. ..+..+++|+.|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 455666665554443 34445555555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=9.3e-05 Score=48.85 Aligned_cols=106 Identities=10% Similarity=0.143 Sum_probs=59.0
Q ss_pred cccccccEEEccCC-CCCCC------CCCCCCCCCCEEeeCCccccccCc----ccccCCCCCcEEEecCCcCcc-----
Q psy13911 31 NENRYLEKLYLTSN-ALTDI------GPLNKCRQLNTLHVAYNAITSLPD----NCISAWSEMEELVLSGNGISS----- 94 (183)
Q Consensus 31 ~~~~~L~~L~l~~~-~~~~~------~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~l~~----- 94 (183)
...+.|+.|+++++ ++... .++..-+.|+.|++++|.+.+... .++...++|++|+++.|.++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666654 55432 334455667777777777663222 223455677788887777762
Q ss_pred CCCCCCCCCCCccEEEeeCCcC---CCC------CCccCCCcccEEeccCcc
Q psy13911 95 LPNTIPQSWPHLRVLRLHSNHL---TSC------PTLYLSSSLRVLDLSYNH 137 (183)
Q Consensus 95 ~~~~~~~~~~~L~~L~l~~~~~---~~~------~~~~~~~~L~~l~l~~n~ 137 (183)
+...+. .-+.|++|+++++.. ... ..+...+.|..++++.|.
T Consensus 118 la~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 212222 345588888876532 211 123444667777776654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.25 E-value=0.00077 Score=41.44 Aligned_cols=36 Identities=36% Similarity=0.618 Sum_probs=18.0
Q ss_pred CCcEEEecCCcCccCCCCCCCCCCCccEEEeeCCcC
Q psy13911 81 EMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116 (183)
Q Consensus 81 ~L~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 116 (183)
++++|++++|.++.++...+..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555555554444445555555555443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00045 Score=42.48 Aligned_cols=56 Identities=25% Similarity=0.209 Sum_probs=44.8
Q ss_pred cEEEeeCCcCC--CCCCccCCCcccEEeccCcccccccCCCCCC-CCccEEEcCCCCcee
Q psy13911 107 RVLRLHSNHLT--SCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH 163 (183)
Q Consensus 107 ~~L~l~~~~~~--~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~ 163 (183)
..++.+++.++ .+|. .-..+++.|+|++|.|+.++...+.. ++|+.|++++|++.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36788888887 7773 12247999999999999998887765 889999999999875
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00034 Score=46.14 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=78.6
Q ss_pred HHHHhhcCCCCcEEEccCC-cCCC-----ccccccccccccEEEccCCCCCCC--CC----CCCCCCCCEEeeCCccccc
Q psy13911 3 LELFLQNSSKLKVLNISKN-CLKM-----LPSLNNENRYLEKLYLTSNALTDI--GP----LNKCRQLNTLHVAYNAITS 70 (183)
Q Consensus 3 ~~~~~~~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~--~~----~~~l~~L~~l~l~~~~~~~ 70 (183)
+...+..-+.|+.|++.++ .+.. +...+...+.|+.|++++|++... .+ +..-+.|+.|++++|.|.+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 5566777899999999985 7763 345566778999999999999866 33 3455789999999999984
Q ss_pred cC----cccccCCCCCcEEEecCCc---Ccc-----CCCCCCCCCCCccEEEeeCCc
Q psy13911 71 LP----DNCISAWSEMEELVLSGNG---ISS-----LPNTIPQSWPHLRVLRLHSNH 115 (183)
Q Consensus 71 ~~----~~~~~~~~~L~~l~l~~~~---l~~-----~~~~~~~~~~~L~~L~l~~~~ 115 (183)
.. ..++....+|++|+++++. +.. +.... ..-+.|..|+++.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCC
Confidence 32 2335566789999998653 331 11111 134678888887654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=92.25 E-value=0.95 Score=26.10 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCCCCCCCCCEEeeCCccccccCcccccCCCCCcEEEecC
Q psy13911 50 GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSG 89 (183)
Q Consensus 50 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 89 (183)
.+|.+|++|+.+.+..+ ++.+...+|..|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34455555555555432 3344444455555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.35 E-value=1.2 Score=25.60 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=35.8
Q ss_pred CCcCCCcc-ccccccccccEEEccCCCCCCC--CCCCCCCCCCEEeeCCcc
Q psy13911 20 KNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67 (183)
Q Consensus 20 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~l~l~~~~ 67 (183)
+..++.|. ..|.++..|+.+.+..+ ++.+ .+|.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 34566666 67888999999999864 4555 789999999999887643
Done!