RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13911
(183 letters)
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 90.9 bits (226), Expect = 4e-22
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L ++ L+ S N + ++ N L L L N LTD L L + ++YN
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLS 125
+ + + +E L +S N + +L Q P L+VL L NHL
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQF 317
Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
L L L +N + L L+T L+ L +S N
Sbjct: 318 DRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHND 350
Score = 80.5 bits (199), Expect = 2e-18
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 8/162 (4%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
L N+S N L L +E+L + N++ + +L L + +N +T
Sbjct: 186 PSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVV-RGPVNVELTILKLQHNNLTD 240
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLR 129
+ + + E+ LS N + + L L + +N L + +L+
Sbjct: 241 TAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298
Query: 130 VLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
VLDLS+NHL + N +L+ L + N + + + +
Sbjct: 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340
Score = 75.9 bits (187), Expect = 8e-17
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 6/171 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
LQ ++I + + + + ++ + + L+ RQ+ L++
Sbjct: 17 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
I + + +++L + N I LP + Q+ P L VL L N L+S P
Sbjct: 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136
Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
L L +S N+LER+ +T LQ L +S N HVD + S
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187
Score = 72.0 bits (177), Expect = 2e-15
Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 11/156 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
+ ++ L + N ++ LP + L L L N L+ + G + +L TL +
Sbjct: 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
+ N + + D+ A + ++ L LS N ++ + ++ S L + N L++
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAIP- 204
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
++ LD S+N + + +L L + N
Sbjct: 205 --IAVEELDASHNSINVVRGPVN--VELTILKLQHN 236
Score = 54.7 bits (132), Expect = 2e-09
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 6/132 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI-GPLNKCRQLNTLHVA 64
L N L +++S N L+ + + LE+LY+++N L + L L ++
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
+N + + N + +E L L N I +L + L+ L L N L
Sbjct: 304 HNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL 359
Query: 125 SSSLRVLDLSYN 136
++ +
Sbjct: 360 FRNVARPAVDDA 371
Score = 38.1 bits (89), Expect = 8e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
AL L+ Q LKVL++S N L + + LE LYL N++ + L+ L L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNL 344
Query: 62 HVAYNAITSLPDNCISAW 79
+++N N + A
Sbjct: 345 TLSHNDWDC---NSLRAL 359
Score = 29.6 bits (67), Expect = 0.52
Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 126 SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
++ +++ + + +L L +Q++ L+++ +D F +
Sbjct: 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 87.2 bits (216), Expect = 1e-20
Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 11/164 (6%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNN--ENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
K+++ + N L+ P+ + + L L N + + +L L +
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD 603
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTLY 123
YN I +P++ + ++E L S N + +PN +S + + N + S
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 124 LSS-------SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
S + + LSYN +++ + + +S N
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Score = 84.5 bits (209), Expect = 1e-19
Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
LQ KL +L+ N ++ L + N L L L N + +I Q+ L
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHLEAFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624
Query: 62 HVAYNAITSLPDNC-ISAWSEMEELVLSGNGISSLPNTIPQSWP-----HLRVLRLHSNH 115
++N + +P+ + M + S N I S I S + + L N
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Query: 116 LTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP--------KQLQYLDVSGN 159
+ P S + + LS N + + N+L P L +D+ N
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Score = 82.2 bits (203), Expect = 7e-19
Identities = 31/213 (14%), Positives = 70/213 (32%), Gaps = 49/213 (23%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRY------LEKLYLTSNALTDIGP--LNKC 55
++ + ++ S N + + + + L+ N +
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696
Query: 56 RQLNTLHVAYNAITSLPDN-------CISAWSEMEELVLSGNGISSLPNTIP-QSWPHLR 107
++T+ ++ N +TS+P+N + + L N ++SL + + P+L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756
Query: 108 VLRLHSNHLTSCPT----------LYLS---------------------SSLRVLDLSYN 136
+ + N +S PT + SL L + N
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816
Query: 137 HLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
+ +++ QL LD++ NP + +D
Sbjct: 817 DIRKVDEKLT--PQLYILDIADNPNISIDVTSV 847
Score = 80.7 bits (199), Expect = 2e-18
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 24/175 (13%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRY----------LEKLYLTSNALTDIGP---LN 53
L + +L+ LNI+ N L + ++ Y+ N L + L
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570
Query: 54 KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
K +L L +N + L ++ +L L N I +P + L
Sbjct: 571 KMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628
Query: 114 NHLTSCPTLYLSSS---LRVLDLSYNHLERL------NLNTLIPKQLQYLDVSGN 159
N L P ++ + S + +D SYN + +++ + +S N
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683
Score = 78.0 bits (192), Expect = 2e-17
Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 19/177 (10%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALTDIGP-------LNKCR 56
F + +++ L S N LK +P++ N + + + N + G K
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQ-------SWPHLRVL 109
+T+ ++YN I P + S + ++LS N ++S+P + + L +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733
Query: 110 RLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
L N LTS L +D+SYN L QL+ +
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790
Score = 73.4 bits (180), Expect = 8e-16
Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 22/177 (12%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNEN--------RYLEKLYLTSNALTDIGP---LNK 54
S + + +S N + +P + + L + L N LT +
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN---TIPQSW---PHLRV 108
L+ + V+YN +S P S+++ + + P P L
Sbjct: 752 LPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810
Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK---QLQYLDVSGNPRL 162
L++ SN + L+ L +LD++ N +++ ++ P + L +
Sbjct: 811 LQIGSNDIRKVDE-KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Score = 58.3 bits (141), Expect = 1e-10
Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
+Q +KL+++ + + +++ E+ + N L + +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN--C 501
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQ---------SWPHLRVLRLHSNHL 116
+T LPD + E++ L ++ N S + P +++ + N+L
Sbjct: 502 PNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560
Query: 117 TSCP---TLYLSSSLRVLDLSYNHLERLN-LNTLIPKQLQYLDVSGN 159
P +L L +LD +N + L T +L L + N
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN--VKLTDLKLDYN 605
Score = 51.4 bits (123), Expect = 3e-08
Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 23/139 (16%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
+ L +++S NC P+ + L+ +
Sbjct: 746 DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ----------------RDA 789
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL- 122
N I I+ + +L + N I + + P L +L + N S
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTS 846
Query: 123 ---YLSSSLRVLDLSYNHL 138
Y+ + + VL
Sbjct: 847 VCPYIEAGMYVLLYDKTQD 865
Score = 46.4 bits (110), Expect = 1e-06
Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 30/194 (15%)
Query: 6 FLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
L N+ ++ L+++ K +P + L+ L +++ T G L +L
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 65 ---YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP---QSWPHLRVLRL--HSNHL 116
+ + + L + I+ P P S L+ ++ +N +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 117 TSCP-TLYLSSSLRVLDLSYNHLERL--------------NLNTLIP------KQLQYLD 155
T + + L+++ + + K L ++
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 156 VSGNPRLHVDPNHF 169
+ P + P+
Sbjct: 498 LYNCPNMTQLPDFL 511
Score = 34.5 bits (79), Expect = 0.015
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
+ P + + L L+G G +P+ I L+VL ++ T L+
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLF 366
Query: 124 ----LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L+ + + + ++L D+ +
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 85.4 bits (212), Expect = 2e-20
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L++ S L+ L+++ N ++ L + +E L+ +N ++ + ++ + +++A N
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRV-SCSRGQGKKNIYLANN 130
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
IT L D S ++ L L N I ++ + S L L L N + +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190
Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ L+ LDLS N L + + ++ + N
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224
Score = 77.7 bits (192), Expect = 1e-17
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
Q++ +K L++S N L + + + LE L L+SN L + L L TL +
Sbjct: 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N + L +E L + N IS + + + L +N +T L
Sbjct: 90 NYVQELLVG-----PSIETLHAANNNISRVS---CSRGQGKKNIYLANNKITMLRDLDEG 141
Query: 126 --SSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
S ++ LDL N ++ +N L L++L++ N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 75.4 bits (186), Expect = 7e-17
Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQL 58
A+ QN ++ K+ ++ + LK + ++ +++L L+ N L+ I L +L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
L+++ N + D + + S + L L+ N + L P + L +N+++
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISR 113
Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
+ + L+ N + L ++QYLD+ N V+
Sbjct: 114 VSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Score = 71.9 bits (177), Expect = 1e-15
Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 31/180 (17%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
L ++ L+ + N + + + + +YL +N +T + ++ L +
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 65 YNAITSLP-DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--- 120
N I ++ ++ +E L L N I + + + L+ L L SN L
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEF 210
Query: 121 -------TLYLS--------------SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ L +L DL N L K + V+
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Score = 68.9 bits (169), Expect = 2e-14
Identities = 20/151 (13%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 26 LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83
+ + + +T ++L + L ++ N ++ + ++ ++++E
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
L LS N + + +S LR L L++N++ S+ L + N++ R++
Sbjct: 62 LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC 116
Query: 144 NTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
+ + + + ++ N +
Sbjct: 117 SRG--QGKKNIYLANNKITMLRDLDEGCRSR 145
Score = 53.8 bits (130), Expect = 3e-09
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVA 64
+S L+ LN+ N + + L+ L L+SN L +GP + + +
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC----- 119
N + + + +E L GNG S + RV + +
Sbjct: 223 NNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNE 280
Query: 120 -----PTLYLSSSLRVLDLSYNHLERL 141
PTL + DL +RL
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRL 307
Score = 35.0 bits (81), Expect = 0.009
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 6/111 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL-HVAY 65
Q+++ + +++ N L ++ ++ LE L N + + + VA
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
+ L + LP R++ L +H
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF-----ADRLIALGHHHH 315
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 86.7 bits (215), Expect = 2e-20
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
++ ++L++ KN +K L + +LE+L L N ++ + P N L TL + N
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
+ +P + S + +L +S N I L + + Q +L+ L + N L S
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 126 -SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFK 170
+SL L L +L + L L L + + FK
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197
Score = 84.4 bits (209), Expect = 1e-19
Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 6/174 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
N L+ L + N LK++P L KL ++ N + + L +L V
Sbjct: 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--T 121
N + + S + +E+L L ++S+P L VLRL ++ + +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 122 LYLSSSLRVLDLSY-NHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
L+VL++S+ +L+ + N L L L ++ V +
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249
Score = 78.2 bits (193), Expect = 1e-17
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 6/160 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLN--TLHV 63
L + L VL + + + + L+ L ++ D N LN +L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
+ +T++P + + L LS N IS++ ++ L+ ++L L
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291
Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+ LRVL++S N L L + L+ L + NP
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Score = 76.3 bits (188), Expect = 7e-17
Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 6/177 (3%)
Query: 11 SKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNA 67
+ L+ L + K L +P+ + L L L + I + +L L +++
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-- 125
+ L ++ ++++P + +LR L L N +++ L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 126 SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181
L+ + L L + L+ L+VSGN ++ + F S + + +
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328
Score = 67.8 bits (166), Expect = 6e-14
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 7 LQNSSKLKVLNISKNC-LKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
+ +LKVL IS L + L L +T LT + + L L++
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--T 121
+YN I+++ + + ++E+ L G ++ + + +LRVL + N LT+
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315
Query: 122 LYLSSSLRVLDLSYNHL 138
+ +L L L N L
Sbjct: 316 FHSVGNLETLILDSNPL 332
Score = 48.2 bits (115), Expect = 3e-07
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--S 126
T P C + + ++ ++P IP R+L L N + + +
Sbjct: 1 TGCPPRCECSAQD-RAVLCHRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFP 56
Query: 127 SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
L L+L+ N + + L+ L + N + F +
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 86.5 bits (214), Expect = 2e-20
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L ++ L+ S N + ++ N L L L N LTD L L + ++YN
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
+ + + +E L +S N + +L Q P L+VL L NHL
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQF 323
Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
L L L +N + L L+T L+ L +S N
Sbjct: 324 DRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHND 356
Score = 77.3 bits (190), Expect = 3e-17
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 8/162 (4%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
L N+S N L L +E+L + N++ + +L L + +N +T
Sbjct: 192 PSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVV-RGPVNVELTILKLQHNNLTD 246
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLR 129
+ + + E+ LS N + + L L + +N L + +L+
Sbjct: 247 TAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304
Query: 130 VLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
VLDLS+NHL + N +L+ L + N + + + +
Sbjct: 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346
Score = 75.3 bits (185), Expect = 1e-16
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 6/171 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
LQ ++I + + + + ++ + + L+ RQ+ L++
Sbjct: 23 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
I + + +++L + N I LP + Q+ P L VL L N L+S P
Sbjct: 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
L L +S N+LER+ +T LQ L +S N HVD + S
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193
Score = 70.7 bits (173), Expect = 8e-15
Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 11/156 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ ++ L + N ++ LP + L L L N L+ + + +L TL +
Sbjct: 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
+ N + + D+ A + ++ L LS N ++ + P L + N L++
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIP- 210
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
++ LD S+N + + +L L + N
Sbjct: 211 --IAVEELDASHNSINVVRGPVN--VELTILKLQHN 242
Score = 36.4 bits (84), Expect = 0.003
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
AL L+ Q LKVL++S N L + + LE LYL N++ + L+ L L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNL 350
Query: 62 HVAYNAITSLPDNCISAW 79
+++N N + A
Sbjct: 351 TLSHNDWDC---NSLRAL 365
Score = 29.9 bits (67), Expect = 0.44
Identities = 11/111 (9%), Positives = 34/111 (30%), Gaps = 18/111 (16%)
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
YN P+ + + V I + + + +
Sbjct: 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL---------------- 50
Query: 125 SSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
++ +++ + + +L L +Q++ L+++ +D F +
Sbjct: 51 -NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 100
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 84.7 bits (210), Expect = 3e-20
Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 32/186 (17%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHV 63
++ LK L++S N + + S LE L + L + R L L +
Sbjct: 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 64 AYNAITSLPD-----------------NCISAWSE--------MEELVLSGNGISSLPNT 98
++ + + + + L LS + L T
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 99 IPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTL--IPKQLQYL 154
S L+VL + N+ S T +SL+VLD S NH+ L P L +L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
Query: 155 DVSGNP 160
+++ N
Sbjct: 254 NLTQND 259
Score = 68.5 bits (168), Expect = 2e-14
Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 35/192 (18%)
Query: 13 LKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP----LNKCRQLNTLHVAYNA 67
L + N L+ LP + L KL L+SN L+ G L L +++N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCP------ 120
+ ++ N ++E L + + + S +L L + H
Sbjct: 90 VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 121 -----TLYLS----------------SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG 158
L ++ +L LDLS LE+L+ LQ L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 159 NPRLHVDPNHFK 170
N +D +K
Sbjct: 209 NNFFSLDTFPYK 220
Score = 65.4 bits (160), Expect = 2e-13
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI---GPLNKCRQ 57
+ L L+IS ++ + L++ LE L + N+ + + R
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----LEVLKMAGNSFQENFLPDIFTELRN 176
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L L ++ + L ++ S ++ L +S N SL + L+VL NH+
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 118 SCPT---LYLSSSLRVLDLSYN 136
+ + SSL L+L+ N
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQN 258
Score = 48.5 bits (116), Expect = 3e-07
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----T 121
+TS+P I + + L L N + SLP+ + L L L SN L+ +
Sbjct: 17 KGLTSVPTG-IPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73
Query: 122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
+ ++SL+ LDLS+N + ++ N L +QL++LD +
Sbjct: 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112
Score = 43.5 bits (103), Expect = 1e-05
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLER 140
E+ + G++S+P IP L L SN L S P + L L LS N L
Sbjct: 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 141 LNLNTLI---PKQLQYLDVSGN 159
+ L+YLD+S N
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFN 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 84.7 bits (210), Expect = 9e-20
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+ + VLN++ N L+ LP+ N L L + N ++ + P K L L++ +N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYL 124
++ L D + + + EL L N I + N +L L L N L+S T
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 125 SSSLRVLDLSYNHLERLN---LNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
+L+ L LS N ++ L L+ L+ L++S N P F +
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Score = 83.5 bits (207), Expect = 2e-19
Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 10/172 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
S+L L++ N + L L+ L L N L+ + C L LH
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
+ N+I + +N + L LS NG+SS +L+ L L +N + + +
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Query: 123 YLS----SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
L SSL+ L+LS N ++ + +L L ++
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215
Score = 75.4 bits (186), Expect = 2e-16
Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 7/164 (4%)
Query: 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITS 70
+V + S L +P + + L LT N L + + QL +L V +N I+
Sbjct: 6 HEVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSL 128
L ++ L L N +S L + +L L L SN + +L
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 129 RVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
LDLS+N L L T + + LQ L +S N +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167
Score = 75.0 bits (185), Expect = 2e-16
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ L L++ N ++ + + + + L L L+ N L+ + L L +
Sbjct: 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152
Query: 64 AYNAITSLPDNCISAW--SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
+ N I +L + + S +++L LS N I + L L L++ L T
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Query: 122 LYLS-----SSLRVLDLSYNHLERLNLNT---LIPKQLQYLDVSGNPRLHVDPNHFKS 171
L +S+R L LS + L + T L L LD+S N V + F
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270
Score = 75.0 bits (185), Expect = 2e-16
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 17/171 (9%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNE---NRYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
L+ L + + LK + S + R L L L++N + +I L +L L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 62 HVAYNAITSLPDNCISAW--------SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
+ +N + L + S + L L NG +P + + L+++ L
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569
Query: 114 NHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGNP 160
N+L + P SL+ L+L N + + P + L LD+ NP
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620
Score = 71.6 bits (176), Expect = 4e-15
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 17/170 (10%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
L+VL++ N + + + ++YL+ N + L L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 63 VAYNAITSLPD--NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ A+ ++ + + L LS N I+++ + + + L +L L N+L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520
Query: 121 TLYLS----------SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
S L +L+L N + + + +L+ +D+ N
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570
Score = 71.2 bits (175), Expect = 5e-15
Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 20/188 (10%)
Query: 4 ELFLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGPLNKC-----RQ 57
EL + +S LK L +S N +K P + L L+L + L C
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 58 LNTLHVAYNAITSLPDNCIS--AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
+ L ++ + +++ + W+ + L LS N ++ + N P L L N+
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 116 LTSCP-----------TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLH 163
+ L L S +S L +++ + K L++L++ N
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 164 VDPNHFKS 171
+ N F
Sbjct: 344 IKSNMFTG 351
Score = 68.5 bits (168), Expect = 4e-14
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 35 YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
E + LT + P + + L++ +N + LP + +S++ L + N IS
Sbjct: 5 SHEVADCSHLKLTQV-PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQL 151
L + Q P L+VL L N L+ T ++L L L N ++++ N + K L
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 152 QYLDVSGNPRLHVDPNHF 169
LD+S N
Sbjct: 124 ITLDLSHNGLSSTKLGTQ 141
Score = 66.9 bits (164), Expect = 2e-13
Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP----------LNK 54
Q L +L++S N + + E LE L L N L + L
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
L+ L++ N +P E++ + L N +++LP ++ + L+ L L N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Query: 115 HLTSCPTLYLS---SSLRVLDLSYNHLE 139
+TS +L LD+ +N +
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 65.4 bits (160), Expect = 4e-13
Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 22/174 (12%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNN----------ENRYLEKLYLTSNALTDIGP--LNK 54
L ++ LN+ ++ K SL + + LE L + N + I
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEM-----EELVLSGNGISSLPNTIPQSWPHLRVL 109
L L ++ + SL + + L L+ N IS + + HL VL
Sbjct: 352 LINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 110 RLHSNHLTSCPT---LYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
L N + T ++ + LSYN +L N+ LQ L +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464
Score = 64.3 bits (157), Expect = 1e-12
Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 19/171 (11%)
Query: 9 NSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP-----------LNKCR 56
+ L +L++S N L ++ + + LE +L N + + LN R
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
++ ++ + D +E L + N I + + + +L+ L L ++
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 117 TSCP------TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+ S L +L+L+ N + ++ + L+ LD+ N
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Score = 46.5 bits (111), Expect = 2e-06
Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 23/143 (16%)
Query: 5 LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
FL+ S L +LN+ N +P +L + +
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPV---------------------EVFKDLFELKIIDLG 568
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSL-PNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
N + +LP + + ++ L L N I+S+ ++ +L L + N C
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD-CTCES 627
Query: 124 LSSSLRVLDLSYNHLERLNLNTL 146
++ + ++ ++ ++ L+ + L
Sbjct: 628 IAWFVNWINETHTNIPELSSHYL 650
Score = 30.0 bits (68), Expect = 0.49
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
+ S V D S+ L ++ + +P + L+++ N + +F Y
Sbjct: 3 TVSHEVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQ 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 83.5 bits (207), Expect = 1e-19
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 20/169 (11%)
Query: 7 LQNSSKLKVLNISKNCLKMLP-------SLNNENRYLEKLYLTSNALTDIGPLNKCRQLN 59
+++ V+ + N LK + L + + +T I P L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKK----LSYIRIADTNITTI-PQGLPPSLT 195
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
LH+ N IT + + + + +L LS N IS++ N + PHLR L L++N L
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Query: 120 P-TLYLSSSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNP 160
P L ++V+ L N++ + N P + + NP
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Score = 74.7 bits (184), Expect = 2e-16
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
KL+ L +SKN LK LP + L++L + N +T + N Q+ + +
Sbjct: 96 FAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 65 YNAITS--LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
N + S + + ++ + ++ I+++P +P P L L L N +T
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAA 210
Query: 123 YLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
L ++L L LS+N + ++ +L L+ L ++ N
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Score = 73.9 bits (182), Expect = 3e-16
Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 13 LKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAIT 69
+L++ N + + + +N + L L L +N ++ I P +L L+++ N +
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 70 SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----TLYLS 125
LP+ ++EL + N I+ + ++ + V+ L +N L S
Sbjct: 114 ELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
L + ++ ++ + P L L + GN VD K +
Sbjct: 171 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 217
Score = 63.9 bits (156), Expect = 1e-12
Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 39/166 (23%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
Q KL + I+ + +P + L +L+L N +T + L L L ++
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN---------- 114
+N+I+++ + ++ + EL L+ N + +P + +++V+ LH+N
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDF 283
Query: 115 -------HLTSCPTLYLSS-----------------SLRVLDLSYN 136
S + L S + L
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 63.1 bits (154), Expect = 2e-12
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
Query: 35 YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
+L + + L + P + L + N IT + D + L+L N IS
Sbjct: 32 HLRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQY 153
+ L L L N L P + +L+ L + N + ++ + Q+
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 154 LDVSGNP 160
+++ NP
Sbjct: 150 VELGTNP 156
Score = 26.5 bits (59), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
LRV+ S LE++ + +P LD+ N + FK+ ++
Sbjct: 32 HLRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKN 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 83.1 bits (206), Expect = 1e-19
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 11/164 (6%)
Query: 7 LQNSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVA 64
+ + + N L+ + L L ++ LT I P + LN LH+
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI-PKDLPETLNELHLD 201
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLY 123
+N I ++ + +S++ L L N I + N P LR L L +N L+ P L
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNP 160
L+V+ L N++ ++ +N P + + NP
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305
Score = 73.1 bits (180), Expect = 6e-16
Identities = 41/173 (23%), Positives = 64/173 (36%), Gaps = 9/173 (5%)
Query: 11 SKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGPLN---KCRQLNTLHVAYN 66
S L L I N ++ +P R + + + N L + G +LN L ++
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
+T +P + + EL L N I ++ + L L L N + LS
Sbjct: 183 KLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239
Query: 126 -SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVR 177
+LR L L N L R+ K LQ + + N V N F V+
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292
Score = 70.8 bits (174), Expect = 3e-15
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 11/171 (6%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
S +L++ N + L + + ++L L L +N ++ I + R+L L+++ N
Sbjct: 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC---PTLY 123
+ +P N S + EL + N I +P + ++ + + N L + P +
Sbjct: 113 HLVEIPPN---LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
L L +S L + + P+ L L + N ++ Y
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSK 218
Score = 65.0 bits (159), Expect = 4e-13
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 3/127 (2%)
Query: 35 YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
+L + + L + P L + N I+ L + + LVL N IS
Sbjct: 34 HLRVVQCSDLGLKAV-PKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQY 153
+ L+ L + NHL P L SSL L + N + ++ + +
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151
Query: 154 LDVSGNP 160
+++ GNP
Sbjct: 152 IEMGGNP 158
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 81.6 bits (202), Expect = 3e-19
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 15/165 (9%)
Query: 7 LQNSSKLKVLNISKNC-LKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQL 58
+ L+ L++S N L+ + L L L+L L ++GP L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGR----LHTLHLDRCGLQELGPGLFRGLAAL 131
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
L++ NA+ +LPD+ + L L GN ISS+P + L L LH N +
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 119 CPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
L L L N+L L L P + LQYL ++ NP
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
Score = 77.3 bits (191), Expect = 1e-17
Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 7/167 (4%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+ + + + N + +P+ + R L L+L SN L I L L ++ N
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 67 A-ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
A + S+ + L L G+ L + + L+ L L N L + P
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 126 --SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
+L L L N + + L L + N HV P+ F
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Score = 67.3 bits (165), Expect = 5e-14
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNG-I 92
++++L N ++ + CR L L + N + + + + +E+L LS N +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-K 149
S+ L L L L ++L+ L L N L+ L +T
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 150 QLQYLDVSGNPRLHVDPNHFKS 171
L +L + GN V F+
Sbjct: 154 NLTHLFLHGNRISSVPERAFRG 175
Score = 30.3 bits (69), Expect = 0.30
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
L + P + ++ + + L N + + + + L L + N +D F
Sbjct: 19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 81.9 bits (203), Expect = 8e-19
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + L+ L + N + + L L++L L N L DIG L L L +A N
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I++L +S +++ EL L N IS++ L L L+ N L +
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLK 309
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
+L L L +N++ + +++L +LQ L N
Sbjct: 310 NLTYLTLYFNNISDISPVSSL--TKLQRLFFYNN 341
Score = 77.7 bits (192), Expect = 2e-17
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + + L L+++ N + L L+ L +L L +N +++I PL L L + N
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAGLTALTNLELNEN 297
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+ + IS + L L N IS + S L+ L ++N ++ +L +
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVSSLANLT 353
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170
++ L +N + L L L ++ L ++ + N+
Sbjct: 354 NINWLSAGHNQISDLTPLANL--TRITQLGLNDQAWTNAPVNYKA 396
Score = 70.4 bits (173), Expect = 9e-15
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 7/153 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ ++ L + +K + + L ++ ++N LTDI PL +L + + N
Sbjct: 42 QTDLDQVTTLQADRLGIKSIDGVEY-LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I + ++ + + L L N I+ + ++ +L L L SN ++ L +
Sbjct: 101 QIADITP--LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLT 156
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
SL+ L + L L L+ LD+S N
Sbjct: 157 SLQQLSFGNQVTDLKPLANL--TTLERLDISSN 187
Score = 68.8 bits (169), Expect = 3e-14
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + L+ L+ + P N LE+L ++SN ++DI L K L +L N
Sbjct: 152 LSGLTSLQQLSFGNQVTDLKPLANLTT--LERLDISSNKVSDISVLAKLTNLESLIATNN 209
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I+ + + + ++EL L+GN + + S +L L L +N +++ L +
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLT 265
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
L L L N + + L L L L+++ N
Sbjct: 266 KLTELKLGANQISNISPLAGL--TALTNLELNENQ 298
Score = 66.9 bits (164), Expect = 1e-13
Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 8/154 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
++ + K + S + + L + I + L ++ + N
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVSQTD-LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 78
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+T + + +++ +++++ N I+ + + +L L L +N +T L +
Sbjct: 79 QLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDPLKNLT 134
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
+L L+LS N + + L+ L LQ L
Sbjct: 135 NLNRLELSSNTISDISALSGL--TSLQQLSFGNQ 166
Score = 65.8 bits (161), Expect = 3e-13
Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 8/155 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + L L +++N L+ + ++N + L L L N ++DI P++ +L L N
Sbjct: 283 LAGLTALTNLELNENQLEDISPISN-LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
++ + ++ + + L N IS L + + L L+ T+ P Y +
Sbjct: 342 KVSDVSS--LANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYK-A 396
Query: 127 SLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
++ + + N L I D++ N
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431
Score = 61.9 bits (151), Expect = 7e-12
Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ N L L + N + + +++ L++L+ +N ++D+ L +N L +N
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSS-LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I+ L ++ + + +L L+ ++ P + ++ + L + T+
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 421
Query: 127 SLRVLDLSYNHLERLN 142
S D+++N N
Sbjct: 422 SYTEPDITWNLPSYTN 437
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 81.8 bits (202), Expect = 8e-19
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L++ S L+ L+++ N ++ L + +E L+ +N ++ + ++ + +++A N
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRV-SCSRGQGKKNIYLANN 130
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
IT L D S ++ L L N I ++ + S L L L N + +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190
Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ L+ LDLS N L + + ++ + N
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224
Score = 77.6 bits (191), Expect = 3e-17
Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 8/158 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
L ++ L+ + N + + + + +YL +N +T + ++ L +
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 65 YNAITSLP-DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TL 122
N I ++ ++ +E L L N I + + + L+ L L SN L
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEF 210
Query: 123 YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
++ + + L N L + + L++ D+ GN
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248
Score = 74.9 bits (184), Expect = 2e-16
Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGP--LNKCRQL 58
A+ QN ++ K+ ++ + LK SL +++L L+ N L+ I L +L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
L+++ N + D + + S + L L+ N + L P + L +N+++
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISR 113
Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
+ + L+ N + L ++QYLD+ N V+
Sbjct: 114 VSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Score = 73.3 bits (180), Expect = 9e-16
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
Q++ +K L++S N L + + + LE L L+SN L + L L TL +
Sbjct: 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N + L +E L + N IS + + Q + + L +N +T L
Sbjct: 90 NYVQELLVG-----PSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEG 141
Query: 126 --SSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
S ++ LDL N ++ +N L L++L++ N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 64.9 bits (158), Expect = 6e-13
Identities = 20/151 (13%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 26 LPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEME 83
+ + + +T ++L + L ++ N ++ + ++ ++++E
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 84 ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
L LS N + + +S LR L L++N++ S+ L + N++ R++
Sbjct: 62 LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC 116
Query: 144 NTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
+ + + + ++ N +
Sbjct: 117 SRG--QGKKNIYLANNKITMLRDLDEGCRSR 145
Score = 61.4 bits (149), Expect = 1e-11
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 45 ALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWP 104
A+ +I + V +++ + + ++EL LSGN +S + +
Sbjct: 1 AIHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 105 HLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV 164
L +L L SN L L S+LR LDL+ N+++ L + ++ L + N V
Sbjct: 59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP----SIETLHAANNNISRV 114
Query: 165 DPNHFKS 171
+ +
Sbjct: 115 SCSRGQG 121
Score = 58.3 bits (141), Expect = 1e-10
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 6/168 (3%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVA 64
+S L+ LN+ N + + L+ L L+SN L +GP + + +
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS-WPHLRVLRLHSNHLTSCPTLY 123
N + + + +E L GNG S ++ + + +
Sbjct: 223 NNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
+ + E L +L L + L + +
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFA--DRLIALKRKEHALLSGQGSETER 327
Score = 52.9 bits (127), Expect = 8e-09
Identities = 19/176 (10%), Positives = 44/176 (25%), Gaps = 8/176 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL-HVAY 65
Q+++ + +++ N L ++ ++ LE L N + + + VA
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
+ L + LP L+ T L
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 126 S------SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
R +D + + + L+ N +++
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385
Score = 43.3 bits (102), Expect = 1e-05
Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 7/163 (4%)
Query: 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
+V ++K +K L N E + L + P +L L +A+ S
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321
Query: 73 DNCIS-------AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
+ + E+ ++ + + L L +
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381
Query: 126 SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH 168
+ + + ++ L +Q + + + +
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 81.7 bits (202), Expect = 9e-19
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 13/172 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQLN 59
++ L++L +S+N ++ + L N L L L N LT I +L
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLAN----LNTLELFDNRLTTIPNGAFVYLSKLK 139
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
L + N I S+P + + L L +S + + +LR L L +L
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
P L L LDLS NHL + + LQ L + + ++ N F
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251
Score = 77.1 bits (190), Expect = 4e-17
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTS-NALTDIGP--LNKCRQLNTLH 62
SKLK L + N ++ +PS L +L L L+ I L L+
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
+A + +P+ ++ +++EL LSGN +S++ Q HL+ L + + +
Sbjct: 192 LAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249
Query: 123 YLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
SL ++L++N+L L + P L+ + + NP
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
Score = 76.7 bits (189), Expect = 5e-17
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 9/169 (5%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
S+ ++LN+ +N ++++ + ++ R+LE L L+ N + I N LNTL + N
Sbjct: 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL-HSNHLTSCPTLYLS 125
+T++P+ S+++EL L N I S+P+ P LR L L L+
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 126 --SSLRVLDLSYNHLERLN-LNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
S+LR L+L+ +L + L L +L LD+SGN + P F+
Sbjct: 183 GLSNLRYLNLAMCNLREIPNLTPL--IKLDELDLSGNHLSAIRPGSFQG 229
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 80.9 bits (200), Expect = 2e-18
Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 13/172 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQLN 59
++ L+VL + +N ++ + L + L L L N LT I +L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLAS----LNTLELFDNWLTVIPSGAFEYLSKLR 150
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
L + N I S+P + + L L + + + +L+ L L ++
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210
Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
P L L L++S NH + + L+ L V + ++ N F
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262
Score = 76.7 bits (189), Expect = 5e-17
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 9/179 (5%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
S + LN+ +N ++M+ + + +LE L L N++ I N LNTL + N
Sbjct: 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL-HSNHLTSCPTLYLS 125
+T +P S++ EL L N I S+P+ P L L L L
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 126 --SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181
+L+ L+L +++ ++ L P L+ L++SGN + P F S ++++
Sbjct: 194 GLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250
Score = 76.3 bits (188), Expect = 8e-17
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 7 LQNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTS-NALTDIGP--LNKCRQL 58
+ SKL+ L + N ++ +PS + + L +L L L I L
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPS----LMRLDLGELKKLEYISEGAFEGLFNL 198
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
L++ I +P+ ++ +EEL +SGN + L+ L + ++ ++
Sbjct: 199 KYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 119 CPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+SL L+L++N+L L + P + L L + NP
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
Score = 71.7 bits (176), Expect = 2e-15
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNA 67
S++ + ++ L +P L L N + I L L + N+
Sbjct: 53 SNQFSKVVCTRRGLSEVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-- 125
I + + + + L L N ++ +P+ + LR L L +N + S P+ +
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 126 SSLRVLDLS-YNHLERLNLNTLIP-KQLQYLDVSGN 159
SL LDL LE ++ L+YL++
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206
Score = 26.6 bits (59), Expect = 5.2
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
S+ + + L + IP +YL++ N + + F+
Sbjct: 53 SNQFSKVVCTRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHH 100
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 80.8 bits (200), Expect = 2e-18
Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 7/171 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
L L++++ + + L+ L LT+N L + L+ + L L
Sbjct: 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
I+S+ + +E L L N ISS+ L+VL +N +
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 124 LSS----SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170
+SS + L+L+ N + + Q L+ G L V K
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223
Score = 80.1 bits (198), Expect = 4e-18
Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 9/184 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI---GPLNKCRQLNTLH 62
L+N S L+ LN+S N L + + LE L L L P L L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP---QSWPHLRVLRLHSNHLTSC 119
++++ + + ++ L L GN Q+ L +L L L+S
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 120 PTLYLS--SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVR 177
+ + +DLS+N L ++ L + YL+++ N + P+
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551
Query: 178 VYIQ 181
+ ++
Sbjct: 552 INLR 555
Score = 80.1 bits (198), Expect = 4e-18
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 8/170 (4%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+ + L S N L + + L L LT + I +L+TL + N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYL 124
+ + + +S ++ L GISS+ + L L L SNH++S +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 125 SSSLRVLDLSYNHLERLNLNTLIP---KQLQYLDVSGNPRLHVDPNHFKS 171
+ L+VLD N + L+ + L+++GN ++P F S
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Score = 79.3 bits (196), Expect = 8e-18
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 12/178 (6%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNE---NRYLEKLYLTSNALTDIGP--LNKCRQLNT 60
L+N L+ L++S + ++ N + +L+ L L+ N + +C QL
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 61 LHVAYNAITSL-PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
L +A+ + + ++ L LS + + + P L+ L L NH
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 120 PTLYLS-----SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
+ L +L LS+ L ++ + K + ++D+S N
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
Score = 74.3 bits (183), Expect = 4e-16
Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
+ +L++L+++ LK+ + + L+ L L+ + L + L L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 63 VAYNAITSLPDNCISAWSEM---EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
+ N ++ + E LVLS +SS+ S + + L N LTS
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 120 PTLYLSS-SLRVLDLSYNHLERLNLNTL-IPKQLQYLDVSGNP 160
LS L+L+ NH+ + + L I Q + +++ NP
Sbjct: 516 SIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558
Score = 73.9 bits (182), Expect = 5e-16
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 9/162 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
S L+ L+++ L LPS L+KL L++N ++ + L L +
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333
Query: 65 YNAI-TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW--PHLRVLRLHSNHLTSCPT 121
N L C+ + EL LS + I + Q HL+ L L N S T
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 122 LYLSS--SLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
L +LDL++ L+ + + L+ L++S +
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Score = 72.0 bits (177), Expect = 3e-15
Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSL 71
K N L +P + E L + N L I ++ L L + I +
Sbjct: 15 KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLR 129
++ + ++ LVL+ N + + T L+ L ++S + L +L
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 130 VLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
L L NH+ + L P ++L+ LD N ++ S
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175
Score = 70.8 bits (174), Expect = 7e-15
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNAL-TDIGP--LNKCRQL 58
L L S LK L +S N + L ++ N L L + N ++G L L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 59 NTLHVAYNAITSLPDNCISAW--SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
L ++++ I + + S ++ L LS N SL + P L +L L L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 117 TSCPTLYL---SSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
L+VL+LS++ L+ + LQ+L++ GN
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Score = 68.5 bits (168), Expect = 4e-14
Identities = 30/203 (14%), Positives = 69/203 (33%), Gaps = 35/203 (17%)
Query: 7 LQNSSKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
Q+ +L L ++ N L + + + L+ L+ ++ I PL+ + L +L++
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH--SNHLTS-CP 120
N I+S+ +++ L N I L S L L+ N + P
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196
Query: 121 TLYLSSSLRVLDLSYNH---------------------LERLNLNTLIPK--------QL 151
+ S+ + L+ E ++ + P +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256
Query: 152 QYLDVSGNPRLHVDPNHFKSYRS 174
+ +++ + ++ N F +
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSG 279
Score = 63.5 bits (155), Expect = 2e-12
Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 12/162 (7%)
Query: 9 NSSKLKVLNISKNCLKMLPSLNNEN---RYLEKLYLTSNALTDIGPL----NKCRQLNTL 61
+S+ + LN ++ +N + L DI P + ++
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
++ + ++ N +S ++EL L+ +S LP+ + L+ L L +N +
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQ 318
Query: 122 LYLS--SSLRVLDLSYNHLE-RLNLNTLIP-KQLQYLDVSGN 159
+ S SL L + N L L + L+ LD+S +
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Score = 60.8 bits (148), Expect = 2e-11
Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 16/179 (8%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI-----GPLNKCRQ 57
+ L N L+ L + N + + L+ L +NA+ + L +
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS--SLPNTIPQSWPHLRVLRLHSNH 115
L +L++ N I + + + L G + L +
Sbjct: 182 L-SLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 116 LTSCPTLYLSS----SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
S+ ++L ++ ++ NT LQ LD++ L P+
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGL 297
Score = 60.0 bits (146), Expect = 3e-11
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 9/142 (6%)
Query: 6 FLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI-----GPLNKCRQLN 59
QN LKVLN+S + L + L + L+ L L N L +L
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
L +++ ++S+ + ++ M + LS N ++S + L L SNH++
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538
Query: 120 P--TLYLSSSLRVLDLSYNHLE 139
L + S R ++L N L+
Sbjct: 539 LPSLLPILSQQRTINLRQNPLD 560
Score = 47.7 bits (114), Expect = 6e-07
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLN 144
G++ +P T+P L N L + S +L LDL+ + ++ +
Sbjct: 19 CENLGLNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75
Query: 145 TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
T +L L ++ NP + + ++
Sbjct: 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKA 106
Score = 33.5 bits (77), Expect = 0.028
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ + +++S N L + L L SN ++ I P L Q T+++
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINL 554
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
N + C + + +E + + +T+ ++ P LR +RL L+
Sbjct: 555 RQNPLDC---TCSNIYF-LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 80.1 bits (198), Expect = 4e-18
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
S K +++S N LK+L S + N L+ L L+ + I + L+ L + N
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLY 123
I S S + +E LV ++SL + L+ L + N + SC
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 124 LSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKS 171
++L +DLSYN+++ + +N L P+ LD+S NP + F+
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203
Score = 78.5 bits (194), Expect = 1e-17
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 9/174 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSL---NNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLH 62
L L++S+N L + L L L+ N + +L L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Query: 63 VAYNAITSLPD-NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
++ + + + + + ++ L +S + I L L++ N
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 121 --TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
+++L LDLS LE+++ +LQ L++S N L +D +H+
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Score = 76.2 bits (188), Expect = 7e-17
Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 10/173 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
N S+L+ L++S+ ++ + +L L LT N + P + L L
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTS---- 118
+ SL I +++L ++ N I S + +L + L N++ +
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171
Query: 119 --CPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
LD+S N ++ + +L L + GN
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Score = 75.8 bits (187), Expect = 1e-16
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSL 71
L +P + + + L+ N L + + +L L ++ I ++
Sbjct: 14 ITYQCMDQKLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLR 129
D + L+L+GN I S L L L S + + +L+
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131
Query: 130 VLDLSYNHLERLNLNTLIP--KQLQYLDVSGNPRLHVDPNHFKS 171
L++++N + L L ++D+S N + N +
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 69.3 bits (170), Expect = 2e-14
Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 6/139 (4%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP---LNKCRQLNTL 61
+ KL L+IS K+ L L + N+ D L L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
++ + + ++ L +S N + L ++ L L N + +
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
Query: 121 -TLYLSSSLRVLDLSYNHL 138
+ SL +L+ N +
Sbjct: 539 ILQHFPKSLAFFNLTNNSV 557
Score = 67.4 bits (165), Expect = 1e-13
Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 20/186 (10%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSL---------NNENRYLEKLYLTSNALTDIGP-- 51
++ LQN + L V + K +L + +++ LT
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL 111
+ ++ + +A +I L D + + + L + + P P L+ L L
Sbjct: 281 FHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTL 335
Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNT---LIPKQLQYLDVSGNPRLHVDPNH 168
N + SL LDLS N L + L L++LD+S N + +
Sbjct: 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSAN 394
Query: 169 FKSYRS 174
F
Sbjct: 395 FMGLEE 400
Score = 61.2 bits (149), Expect = 1e-11
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
L+ +N L++S N + + + L +L L N + + L L
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231
Query: 62 HV---------AYNAITSLPDNCIS--AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR 110
HV + + + ++E L+ S ++ +
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 111 LHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L + + + L + L++ L L+ L ++ N
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLTMN 338
Score = 55.4 bits (134), Expect = 1e-09
Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 21/173 (12%)
Query: 7 LQNSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGP------LNKCRQL 58
+ LK LN++ N + LP+ + L + L+ N + I +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS-LPNTIPQSWPHLRVLRLHSNHLT 117
+L ++ N I + D ++ EL L GN SS + T Q+ L V RL
Sbjct: 184 LSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242
Query: 118 SCPTLYL----------SSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
L + ++ L+Y + ++ + + ++G
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295
Score = 46.9 bits (112), Expect = 1e-06
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLN 144
+S +P+ IP + + L N L + S S L+ LDLS +E +
Sbjct: 18 CMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 145 TLIP-KQLQYLDVSGNPRLHVDPNHFKSYRS 174
L L ++GNP P F S
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105
Score = 44.3 bits (105), Expect = 8e-06
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 4/133 (3%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
N++ L L++SK L+ + + L+ L ++ N L + N+ L+TL
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPT 121
++N I + + L+ N ++ + W + L + +C T
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587
Query: 122 LYLSSSLRVLDLS 134
++ VLD +
Sbjct: 588 PVEMNTSLVLDFN 600
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 78.7 bits (195), Expect = 6e-18
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ N ++L L I N + L L N L L + +N ++DI + +L L+V N
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLAN-LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I+ + ++ S++ L L+ N + + + +L L L NH+T L S
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS 333
Query: 127 SLRVLDLSYNHLER 140
+ D + +++
Sbjct: 334 KMDSADFANQVIKK 347
Score = 78.0 bits (193), Expect = 1e-17
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ N + L L+++ N ++ + L + L N +TDI P+ +LN+L + N
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLAS-LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
IT L ++ S++ L + N IS + + L++L + SN ++ L S
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDINAV--KDLTKLKMLNVGSNQISDISVLNNLS 287
Query: 127 SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
L L L+ N L ++ + L L +S N
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322
Score = 76.8 bits (190), Expect = 3e-17
Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + + L N + + + N L L + +N +TD+ PL QL L + N
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVAN-MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS- 125
I+ + + ++++ L + N IS + + L L L++N L + +
Sbjct: 254 QISDINA--VKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGG 309
Query: 126 -SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
++L L LS NH+ + L +L ++ D +
Sbjct: 310 LTNLTTLFLSQNHITDIRPLASL--SKMDSADFANQV 344
Score = 76.0 bits (188), Expect = 6e-17
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
L N +K+ LN+ N S + L L +T + + D+ P+ L +L + Y
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N I + +++ + + N I+ + + L L++ +N +T L
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSPLANL 242
Query: 126 SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
S L L++ N + + + L +L+ L+V N
Sbjct: 243 SQLTWLEIGTNQISDINAVKDL--TKLKMLNVGSN 275
Score = 75.3 bits (186), Expect = 1e-16
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L N + L L ++++ +K + + N L L L N + DI PL L+ N
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIAN-LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
IT + ++ + + L + N I+ L + L L + +N ++ + +
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISDINAVKDLT 265
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
L++L++ N + + LN L QL L ++ N + D
Sbjct: 266 KLKMLNVGSNQISDISVLNNL--SQLNSLFLNNNQLGNEDMEVIGG 309
Score = 71.8 bits (177), Expect = 2e-15
Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 9/155 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ ++ + K + + + + KL + + I + L L++ N
Sbjct: 18 DADLAEGIRAVLQKASVTDVVTQEELES-ITKLVVAGEKVASIQGIEYLTNLEYLNLNGN 76
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
IT + +S ++ L + N I+ + Q+ +LR L L+ ++++ L +
Sbjct: 77 QITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISPLANLT 132
Query: 127 SLRVLDLSYNHLERL--NLNTLIPKQLQYLDVSGN 159
+ L+L NH L+ + L YL V+ +
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNM--TGLNYLTVTES 165
Score = 69.5 bits (171), Expect = 1e-14
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ + L ++ + + + LE L L N +TDI PL+ +L L++ N
Sbjct: 40 QEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT-LYLS 125
IT + + + + EL L+ + IS + + + L L +NH S + L
Sbjct: 99 KITDISA--LQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNLGANHNLSDLSPLSNM 154
Query: 126 SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
+ L L ++ + ++ + + L L L ++ N
Sbjct: 155 TGLNYLTVTESKVKDVTPIANL--TDLYSLSLNYN 187
Score = 68.3 bits (168), Expect = 3e-14
Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Query: 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
L + + + + L ++TD+ + + L VA + S+
Sbjct: 2 AATLATLPAPINQIFPDAD-LAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60
Query: 73 DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLD 132
I + +E L L+GN I+ + + L L + +N +T L ++LR L
Sbjct: 61 G--IEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKITDISALQNLTNLRELY 116
Query: 133 LSYNHLERL-NLNTLIPKQLQYLDVSGN 159
L+ +++ + L L ++ L++ N
Sbjct: 117 LNEDNISDISPLANL--TKMYSLNLGAN 142
Score = 65.3 bits (160), Expect = 4e-13
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
L N S+L L I N + + ++ + L+ L + SN ++DI LN QLN+L +
Sbjct: 238 PLANLSQLTWLEIGTNQISDINAVKD-LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN 296
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
N + + I + + L LS N I+ + S + + +
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVIK 346
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 77.8 bits (192), Expect = 9e-18
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 8/165 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+Q + L ++ N L + L N + L L+L N + D+ L ++L +L + +N
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKPLAN-LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I+ + + ++E L L N I+ + L L L N ++ L +
Sbjct: 123 GISDING--LVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDIVPLAGLT 178
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDPNHFK 170
L+ L LS NH+ L L L K L L++ L+ NH
Sbjct: 179 KLQNLYLSKNHISDLRALAGL--KNLDVLELFSQECLNKPINHQS 221
Score = 55.4 bits (134), Expect = 7e-10
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
K L ++TD N+ ++ + + I S+ I + +L L+GN ++ +
Sbjct: 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI 83
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYL 154
+ +L L L N + +L L+ L L +N + + L L QL+ L
Sbjct: 84 KPL--ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL--PQLESL 139
Query: 155 DVSGN 159
+ N
Sbjct: 140 YLGNN 144
Score = 47.7 bits (114), Expect = 4e-07
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
L +KL L++ N + + L L+ LYL+ N ++D+ L + L+ L +
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSL 95
+ P N S + + + +
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
Score = 29.6 bits (67), Expect = 0.51
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
L +KL+ L +SKN + L +L + L+ L L S + ++ + V
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPN 97
+ + IS + E+ + +
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 74.8 bits (185), Expect = 1e-17
Identities = 24/157 (15%), Positives = 41/157 (26%), Gaps = 14/157 (8%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAIT 69
+ L L L + E KL LT + + + + + L Y +T
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 63
Query: 70 SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSL 128
L + E +L ++ L + + P L+ LT +
Sbjct: 64 RLKAA-VGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTELKAAVGELPEK 121
Query: 129 RVLDLSYNHLERL-----NLNTLIPKQLQYLDVSGNP 160
L Y L +L L
Sbjct: 122 SKLQEIYQELTQLKAAVGEL-----PDQSKQQQIYQE 153
Score = 72.5 bits (179), Expect = 1e-16
Identities = 22/133 (16%), Positives = 38/133 (28%), Gaps = 4/133 (3%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAIT 69
+ L L L + E KL LT + + + + + L Y +T
Sbjct: 27 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 86
Query: 70 SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP-TLYLSSSL 128
L + E +L ++ L + + P L+ LT +
Sbjct: 87 RLKAA-VGELPEKSKLQEIYQELTELKAAVGE-LPEKSKLQEIYQELTQLKAAVGELPDQ 144
Query: 129 RVLDLSYNHLERL 141
Y L L
Sbjct: 145 SKQQQIYQELTDL 157
Score = 59.8 bits (146), Expect = 5e-12
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 7/109 (6%)
Query: 54 KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
+ + + L Y +T L + E +L ++ L + + P L+
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIY 59
Query: 114 NHLTSCP-TLYLSSSLRVLDLSYNHLERL--NLNTLIPKQLQYLDVSGN 159
LT + L Y L RL + L + L
Sbjct: 60 QELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGEL--PEKSKLQEIYQ 106
Score = 59.4 bits (145), Expect = 8e-12
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 11 SKLKVLNISKNCLKMLPS----LNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAY 65
+ L L L + L KL LT + + + + + L Y
Sbjct: 50 PEKSKLQEIYQELTRLKAAVGELPE----KSKLQEIYQELTRLKAAVGELPEKSKLQEIY 105
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+T L + E +L ++ L + + P + LT
Sbjct: 106 QELTELKA-AVGELPEKSKLQEIYQELTQLKAAVGE-LPDQSKQQQIYQELTDLK 158
Score = 50.9 bits (123), Expect = 1e-08
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 10/94 (10%)
Query: 11 SKLKVLNISKNCLKMLPS----LNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAY 65
+ L L L + L KL LT++ + + + + L Y
Sbjct: 73 PEKSKLQEIYQELTRLKAAVGELPE----KSKLQEIYQELTELKAAVGELPEKSKLQEIY 128
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTI 99
+T L + + + ++ L
Sbjct: 129 QELTQLKA-AVGELPDQSKQQQIYQELTDLKTAF 161
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 78.2 bits (193), Expect = 2e-17
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 11/173 (6%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
K L++S N L+ L S + + L+ L L+ + I L+TL + N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP---TLY 123
I SL S S +++LV ++SL N L+ L + N + S
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 124 LSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKS 171
++L LDLS N ++ + L +P LD+S NP + P FK
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 78.2 bits (193), Expect = 2e-17
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 7/161 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHV 63
++ LK L++S N + + S LE L + L + R L L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGI-SSLPNTIPQSWPHLRVLRLHSNHLTSCP-- 120
++ + + S +E L ++GN + I +L L L L
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 121 TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
SSL+VL+++ N L+ + LQ + + NP
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Score = 75.1 bits (185), Expect = 2e-16
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 6/145 (4%)
Query: 36 LEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
+ L L+ N L + +L L ++ I ++ D + S + L+L+GN I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 94 SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP--K 149
SL L+ L +L S + +L+ L++++N ++ L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 150 QLQYLDVSGNPRLHVDPNHFKSYRS 174
L++LD+S N + +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQ 174
Score = 75.1 bits (185), Expect = 2e-16
Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 11/176 (6%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ +L+VL++S+ ++ + ++ +L L LT N + + + L L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTS---- 118
+ SL + I ++EL ++ N I S + +L L L SN + S
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 119 --CPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP-RLHVDPNHFKS 171
+ LDLS N + + +L L + N L+V +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Score = 73.2 bits (180), Expect = 8e-16
Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 9/170 (5%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRY---LEKLYLTSNALTDIGP-LNKCRQLNTLHVAYN 66
L+ L++S+N L + + L+ L L+ N + + QL L ++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 67 AITSLPDNCI-SAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
+ + + + + + L +S N I L VL++ N +
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 126 ---SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
+L LDLS LE+L+ LQ L+++ N V F
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Score = 58.6 bits (142), Expect = 9e-11
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGP---LNKCRQLNTL 61
+ L L+IS ++ + N LE L + N+ + + R L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCP 120
++ + L ++ S ++ L ++ N + S+P+ I L+ + LH+N SCP
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 55.1 bits (133), Expect = 2e-09
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 10/145 (6%)
Query: 18 ISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCIS 77
K+ L+ L +L E L L + + D+ N +++ + I + D S
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL--FNCLTNVSSFSLVSVTIERVKD--FS 301
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNH 137
+ L L P +S L+ L SN + + SL LDLS N
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 138 LERLNLNTLI---PKQLQYLDVSGN 159
L + L+YLD+S N
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFN 383
Score = 49.3 bits (118), Expect = 2e-07
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 14/170 (8%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
L + Q L++S N + + + L KL L +N + + L L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227
Query: 62 HVAY---------NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLR-- 110
V + + + + + + I + L +
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 111 -LHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L S + + + L+L TL K L+ L + N
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFG--QFPTLKLKSLKRLTFTSN 335
Score = 48.9 bits (117), Expect = 2e-07
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 10/152 (6%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGP------LNKC 55
+ + LK LN++ N ++ + LE L L+SN + I
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSN 114
+L ++ N + + + +L L N S ++ T Q L V RL
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 115 HLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL 146
+ L + L +E L L
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 78.2 bits (192), Expect = 2e-17
Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 26/186 (13%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
+ + + + + +K + + + KL+L N LTDI PL + L L +
Sbjct: 38 TQNELNSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96
Query: 66 NAIT--------------SLPDNCIS------AWSEMEELVLSGNGISSLPNTIPQSWPH 105
N I SL N IS ++E L L N I+ +
Sbjct: 97 NKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTK 154
Query: 106 LRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHV 164
L L L N ++ L + L+ L LS NH+ L L L K L L++ L+
Sbjct: 155 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL--KNLDVLELFSQECLNK 212
Query: 165 DPNHFK 170
NH
Sbjct: 213 PINHQS 218
Score = 76.7 bits (188), Expect = 6e-17
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L N L L + +N +K L SL + + L+ L L N ++DI L QL +L++ N
Sbjct: 83 LTNLKNLGWLFLDENKIKDLSSLKDLKK-LKSLSLEHNGISDINGLVHLPQLESLYLGNN 141
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
IT + +S ++++ L L N IS + L+ L L NH++ L
Sbjct: 142 KITDITV--LSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDLRALAGLK 197
Query: 127 SLRVLDLSYNHLERLNLNTL----IPKQLQYLD 155
+L VL+L +N +P ++ D
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230
Score = 66.3 bits (161), Expect = 2e-13
Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
+ + S + I P + + ++ ++T + + +++++ + + I S+
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV 58
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYL 154
Q P++ L L+ N LT L +L L L N ++ L +L L K+L+ L
Sbjct: 59 QGI--QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDL--KKLKSL 114
Query: 155 DVSGN 159
+ N
Sbjct: 115 SLEHN 119
Score = 63.2 bits (153), Expect = 3e-12
Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 8/148 (5%)
Query: 13 LKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP 72
+ +K + + K L ++TD N+ ++ + + I S+
Sbjct: 1 MGETITVSTPIKQIFPDDA-FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 59
Query: 73 DNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLD 132
I + +L L+GN ++ + + +L L L N + +L L+ L
Sbjct: 60 --GIQYLPNVTKLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115
Query: 133 LSYNHLERL-NLNTLIPKQLQYLDVSGN 159
L +N + + L L QL+ L + N
Sbjct: 116 LEHNGISDINGLVHL--PQLESLYLGNN 141
Score = 31.6 bits (71), Expect = 0.13
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
L +KL+ L +SKN + L +L + L+ L L S + + NT+
Sbjct: 170 PLAGLTKLQNLYLSKNHISDLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQ 101
++ + E + ++ + I
Sbjct: 229 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 77.5 bits (191), Expect = 3e-17
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRY----LEKLYLTSNALTDI----GPLNKCRQ 57
F Q+ L+ L++S+N + N+ + L+ L L+ N L + L +
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L +L ++ N +PD+C +M L LS GI + IPQ+ L VL + +N+L
Sbjct: 389 LTSLDISRNTFHPMPDSCQW-PEKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNLD 444
Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
S L+ L +S N L+ L +L P L + +S N V F S
Sbjct: 445 SFSLFL--PRLQELYISRNKLKTLPDASLFPV-LLVMKISRNQLKSVPDGIFDRLTS 498
Score = 69.0 bits (169), Expect = 2e-14
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 9/168 (5%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAI 68
V + +PS ++ L L+ N +T IG L C L L + + I
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS---CPTLYLS 125
++ + + +E L LS N +SSL ++ L+ L L N +
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 126 SSLRVLDLS-YNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
++L+ L + + L L++ + KS
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170
Score = 68.2 bits (167), Expect = 5e-14
Identities = 29/170 (17%), Positives = 68/170 (40%), Gaps = 8/170 (4%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
++ +K L++S N + + + L+ L L S+ + I L L ++ N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRL-HSNHLTSCPTLYL 124
++SL + S ++ L L GN +L ++ + +L+ LR+ + + +
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 125 S--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
+ +SL L++ L +L + + +L + + +
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Score = 67.4 bits (165), Expect = 8e-14
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 8/171 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
L+ + L+VL + + + + LE L L+ N L+ + L L++
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
Query: 64 AYNAITSLPDN-CISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
N +L + ++ L + S + L L + + L + +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 122 LYLSS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHF 169
L S + L L + L ++YL++ +
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216
Score = 67.4 bits (165), Expect = 9e-14
Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 19/197 (9%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN--------- 53
+ + + S N L L E +E T N L D P
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 54 -KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH 112
+ + LH+ + S +++ + + + + +P + Q L L L
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342
Query: 113 SNHLTSCPTLYLS-----SSLRVLDLSYNHLERLNLNTLI---PKQLQYLDVSGNPRLHV 164
N + + SL+ L LS NHL + I K L LD+S N H
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP 401
Query: 165 DPNHFKSYRSYVRVYIQ 181
P+ + + +
Sbjct: 402 MPDSCQWPEKMRFLNLS 418
Score = 55.9 bits (135), Expect = 7e-10
Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 18/183 (9%)
Query: 7 LQNSSKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTS-NALTDI--GPLNKCRQLNTL 61
S LK LN+ N + L SL L+ L + + ++I LN L
Sbjct: 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
+ ++ + + + ++ L L + + L +R L L +L
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213
Query: 122 LYLS-------------SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH 168
L + D S+N L +L L ++++ D + N +P+
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273
Query: 169 FKS 171
Sbjct: 274 SDV 276
Score = 52.8 bits (127), Expect = 1e-08
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
C + TS+P +A M+ L LS N I+ + + ++ +L+VL L S+
Sbjct: 4 CDASGVCDGRSRSFTSIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 115 HLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+ + Y SL LDLS NHL L+ + P L+YL++ GNP
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Score = 49.3 bits (118), Expect = 1e-07
Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 25/194 (12%)
Query: 6 FLQNSSKLKVLNIS-KNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTL 61
N + L+ L I + ++ L +L + + +L + L R ++ L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH------ 115
+ + L + S + L L ++ + ++ +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 116 -----LTSCPTLYLS-SSLRVLDLSYNHLERLNLNT---------LIPKQLQYLDVSGNP 160
L L S + D + N L N + + ++ L +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297
Query: 161 RLHVDPNHFKSYRS 174
+ +
Sbjct: 298 LFYDLSTVYSLLEK 311
Score = 42.0 bits (99), Expect = 4e-05
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
+ L+VL++S N L L++LY++ N L + + L + +
Sbjct: 424 VVKTCIPQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKTLPDASLFPVLLVMKI 480
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGN 90
+ N + S+PD + ++++ L N
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 38.6 bits (90), Expect = 6e-04
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 104 PHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRL 162
V S TS P+ L+++++ LDLS+N + + L LQ L + +
Sbjct: 5 DASGVCDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 163 HVDPNHFKSYRS 174
++ + F S S
Sbjct: 64 TIEGDAFYSLGS 75
Score = 29.7 bits (67), Expect = 0.49
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNT 60
L+ F +L+ L IS+N LK LP + L + ++ N L + ++ L
Sbjct: 443 LDSFSLFLPRLQELYISRNKLKTLPDASLFPV-LLVMKISRNQLKSVPDGIFDRLTSLQK 501
Query: 61 LHVAYN 66
+ + N
Sbjct: 502 IWLHTN 507
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 76.5 bits (188), Expect = 7e-17
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
S+L L N L LP L++L ++ N L + L +L L N +TS
Sbjct: 161 SELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS 215
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
LP S ++EL++SGN ++SLP + L+ L + N LTS P L S L
Sbjct: 216 LPALP----SGLKELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLPM--LPSGLLS 265
Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
L + N L RL + + +++ GNP
Sbjct: 266 LSVYRNQLTRLPESLIHLSSETTVNLEGNP 295
Score = 74.5 bits (183), Expect = 3e-16
Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 23/162 (14%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
+ VLN+ ++ L LP + + L + N LT + L +L TL V+ N +TS
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS 95
Query: 71 LPDNCISAWSEMEELVLSGNGISSLP-------------NTIPQSWPHLRVLRLHSNHLT 117
LP E+ + +LP ++P P L+ L + N L
Sbjct: 96 LPVL-PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154
Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
S P L S L L N L L + P LQ L VS N
Sbjct: 155 SLPA--LPSELCKLWAYNNQLTSLPML---PSGLQELSVSDN 191
Score = 73.4 bits (180), Expect = 9e-16
Identities = 43/149 (28%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
+L+ L +S N L LP L L L + L L + N +TS
Sbjct: 81 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTS 135
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
LP ++EL +S N ++SLP + L L ++N LTS P L S L+
Sbjct: 136 LPVLP----PGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLTSLPMLP--SGLQE 185
Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L +S N L L +P +L L N
Sbjct: 186 LSVSDNQLASL---PTLPSELYKLWAYNN 211
Score = 65.3 bits (159), Expect = 5e-13
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
L + + LT + P + TL + N +TSLP E+ L +SGN ++SL
Sbjct: 42 NAVLNVGESGLTTL-PDCLPAHITTLVIPDNNLTSLPALP----PELRTLEVSGNQLTSL 96
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLD 155
P P L + HL + P+ L L + N L L + P LQ L
Sbjct: 97 PVLPPG-LLELSIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPVL---PPGLQELS 147
Query: 156 VSGNP 160
VS N
Sbjct: 148 VSDNQ 152
Score = 62.2 bits (151), Expect = 5e-12
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
L+V + +T+LPD + + LV+ N ++SLP P+ LR L + N
Sbjct: 39 NNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLTSLPALPPE----LRTLEVSGN 91
Query: 115 HLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
LTS P L + HL L P L L + GN
Sbjct: 92 QLTSLPVLPPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGN 131
Score = 61.8 bits (150), Expect = 7e-12
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 10/153 (6%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
S+L L N L LP+L + L++L ++ N LT + L +L L V+ N +TS
Sbjct: 201 SELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS 255
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
LP S + L + N ++ LP ++ + L N L+ L
Sbjct: 256 LPMLP----SGLLSLSVYRNQLTRLPESLIH-LSSETTVNLEGNPLSERTLQALREITSA 310
Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
S + P++ + L ++ L
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343
Score = 45.7 bits (108), Expect = 3e-06
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 7/127 (5%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAIT 69
S+LK L +S N L LP L + L L + N LT + L T+++ N ++
Sbjct: 241 SELKELMVSGNRLTSLPMLPSG---LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297
Query: 70 SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLR 129
A E+ I + R L L + +
Sbjct: 298 ERTLQ---ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354
Query: 130 VLDLSYN 136
+
Sbjct: 355 RWHMFGQ 361
Score = 31.4 bits (71), Expect = 0.15
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L++ VL++ + L L +P + L + N
Sbjct: 38 LNNGNAVLNVGESGLTTLPDC--LPAHITTLVIPDN 71
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 76.6 bits (189), Expect = 7e-17
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 11/175 (6%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
K L++S N L+ L S + + L+ L L+ + I L+TL + N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS---CPTLY 123
I SL S S +++LV ++SL N L+ L + N + S
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 124 LSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKSYR 173
++L LDLS N ++ + L +P LD+S NP + P FK R
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Score = 74.3 bits (183), Expect = 4e-16
Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 7/172 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNTLHV 63
++ LK L++S N + + S LE L + L + R L L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
++ + + S +E L ++GN + I +L L L L
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 123 YLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
+ SSL+VL++S+N+ L+ LQ LD S N + +
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Score = 70.4 bits (173), Expect = 1e-14
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 9/162 (5%)
Query: 7 LQNSSKLKVLNISKNCLKML---PSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLH 62
+ L+ L++S+N L + L+ L L+ N + + QL L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 63 VAYNAITSL-PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
++ + + + + + L +S N I L VL++ N
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 121 --TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
+L LDLS LE+L+ LQ L++S N
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 70.1 bits (172), Expect = 1e-14
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 14/165 (8%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ +L+VL++S+ ++ + ++ +L L LT N + + + L L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW---PHLRVLRLHSNHLTS-- 118
+ SL + I ++EL ++ N I S +P+ + +L L L SN + S
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 119 ----CPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ LDLS N + + +L L + N
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Score = 67.0 bits (164), Expect = 1e-13
Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 7/140 (5%)
Query: 6 FLQNSSKLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNTL 61
+ L L+IS ++ + N LE L + N+ + + R L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP- 120
++ + L ++ S ++ L +S N SL + L+VL NH+ +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 121 --TLYLSSSLRVLDLSYNHL 138
+ SSL L+L+ N
Sbjct: 536 QELQHFPSSLAFLNLTQNDF 555
Score = 62.0 bits (151), Expect = 6e-12
Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 16/160 (10%)
Query: 11 SKLKVLNISKNCLKMLPSLNNEN-------RYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L L I + L L ++ + L S + + + L +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC---- 119
P + + + G S + P L L L N L+
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-----PSLEFLDLSRNGLSFKGCCS 366
Query: 120 PTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ + ++SL+ LDLS+N + ++ N L +QL++LD +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Score = 55.8 bits (135), Expect = 1e-09
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 6/141 (4%)
Query: 7 LQNSSKLKVLNISKNCLK--MLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
S L+VL ++ N + LP + E R L L L+ L + P N L L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSL-PNTIPQSWPHLRVLRLHSNHLT-SCP 120
+++N SL + ++ L S N I + + L L L N +C
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
Query: 121 TLYLSSSLRVLDLSYNHLERL 141
++ +ER+
Sbjct: 561 HQSFLQWIKDQRQLLVEVERM 581
Score = 53.9 bits (130), Expect = 4e-09
Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 22/185 (11%)
Query: 6 FLQNSSKLKVLNISKNCLKML--PSLNNENRYLEKLYLTSNALTDIGP--LNKCRQL--- 58
+ + LK LN++ N ++ P + LE L L+SN + I L Q+
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 59 -NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHL 116
+L ++ N + + + +L L N S ++ T Q L V RL
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 117 TSCPTLYLSS-----SLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNPRLHV 164
+ L L L + L L+ + + V
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 165 DPNHF 169
+
Sbjct: 298 KDFSY 302
Score = 52.7 bits (127), Expect = 1e-08
Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 19/195 (9%)
Query: 6 FLQNSSKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDIGPLN-KCRQLN 59
+ N + L+ L++S N ++ + L+ L L+ N + I P K +L+
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203
Query: 60 TLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPN---TIPQSWPHLRVLRLHSNH 115
L + N + ++ CI + +E L + N + L L +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 116 LTSCPTLYLS--------SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPN 167
L +++ L +ER+ + Q+L++
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFGQFPTL 322
Query: 168 HFKSYRSYVRVYIQL 182
KS + +
Sbjct: 323 KLKSLKRLTFTSNKG 337
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLN 144
+P+ +P + L L N L + L+VLDLS ++ +
Sbjct: 14 CMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 145 TLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
L L ++GNP + F
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSG 98
Score = 33.8 bits (78), Expect = 0.022
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 108 VLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDP 166
+ + P L S + LDLS+N L L + +LQ LD+S ++
Sbjct: 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 167 NHFKS 171
++S
Sbjct: 70 GAYQS 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 74.8 bits (184), Expect = 9e-17
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 4/157 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHVAY 65
L ++L LN+ + L L L L L+ N L + L L V++
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N +TSLP + E++EL L GN + +LP + P L L L +N+LT P L+
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
Query: 126 --SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
+L L L N L + L + + GNP
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
Score = 63.2 bits (154), Expect = 2e-12
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 10/157 (6%)
Query: 8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAY 65
+ +N K L LP + + L+L+ N L L +L L++
Sbjct: 7 SKVASHLEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
+T L + L LS N + SLP + Q+ P L VL + N LTS P L
Sbjct: 65 AELTKLQ--VDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 126 S--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
L+ L L N L+ L L P +L+ L ++ N
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 55.5 bits (134), Expect = 8e-10
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 49 IGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRV 108
I ++K ++ +T+LP + + + L LS N + + + L
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPPD-LPK--DTTILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK--QLQYLDVSGN 159
L L LT L LDLS+N L+ +L L L LDVS N
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFN 110
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 76.2 bits (188), Expect = 9e-17
Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 24/176 (13%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNE---------NRYLEKLYLTSNALTDIGP---LNK 54
L+ +++++N++ N L ++ ++ +Y+ N L L K
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
++L L YN + + ++ L L+ N I+ +P + L N
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
Query: 115 HLTSCPTLYLS---SSLRVLDLSYNHLERLNLNTLIP--------KQLQYLDVSGN 159
L P ++ + S + +D SYN + ++ P + +++S N
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Score = 74.7 bits (184), Expect = 3e-16
Identities = 31/217 (14%), Positives = 71/217 (32%), Gaps = 51/217 (23%)
Query: 5 LFLQNSSKLKVLNISKN--------CLKMLPSLNNENRYLEKLYLTSNALTDIGP--LNK 54
++ S + ++ S N L + + + L++N ++ +
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455
Query: 55 CRQLNTLHVAYNAITSLPDN-------CISAWSEMEELVLSGNGISSLPNTIP-QSWPHL 106
L+++++ N +T +P N + + L N ++ L + + P+L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515
Query: 107 RVLRLHSNHLTSCPT----------LYLS---------------------SSLRVLDLSY 135
+ L N + PT + SL L +
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575
Query: 136 NHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSY 172
N + ++N + LD+ NP + +D ++ Y
Sbjct: 576 NDIRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPY 610
Score = 72.0 bits (177), Expect = 2e-15
Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 21/178 (11%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALTDIGP---------LNK 54
F + +++ L+ + N LK +P++ + + + + N + + K
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS-------WPHLR 107
+++++++ N I+ P S S + + L GN ++ +P + L
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491
Query: 108 VLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
+ L N LT L +DLSYN + L L+ +
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549
Score = 65.1 bits (159), Expect = 7e-13
Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 20/171 (11%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN--------RYLEKLYLTSNALTDIGP---LNKC 55
S L +N+ N L +P + ++ L + L N LT +
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN---TIPQSW---PHLRVL 109
L + ++YN+ + P S ++ + + P+ P L L
Sbjct: 513 PYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571
Query: 110 RLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
++ SN + ++ ++ VLD+ N ++L+ + P + + +
Sbjct: 572 QIGSNDIRKVNEK-ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621
Score = 57.7 bits (140), Expect = 2e-10
Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 17/170 (10%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLH 62
++ + + K + N + + L + Y+ ++ C +
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI---CEAWENEN 231
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
Y D ++ ++ + LP + P ++++ + N S
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQ 290
Query: 122 LYLS----------SSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
L ++++ + YN+L+ + T + K+L L+ N
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Score = 50.8 bits (122), Expect = 4e-08
Identities = 19/185 (10%), Positives = 60/185 (32%), Gaps = 34/185 (18%)
Query: 7 LQNSSKLKVLNISKNCLKMLPS----------LNNENRYLEKLYLTSNALTDIGPLNKCR 56
+ ++L+VL + + K+ +++E + +++ + +
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED-FS 159
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
L + + + ++ N I+ + + + LR + ++
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPF 218
Query: 117 TSCP--------TLYLSSSLRVLDLSYNHLERL--------NLNTLIP------KQLQYL 154
+ + + DL +++L+ L T +P ++Q +
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278
Query: 155 DVSGN 159
+V+ N
Sbjct: 279 NVACN 283
Score = 49.3 bits (118), Expect = 1e-07
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 11/125 (8%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYL------TSNALTDIGP--LNKC 55
+ L +++S N P+ + L+ + N P + C
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
L L + N I + + + L + N S+ + + + L +
Sbjct: 566 PSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
Query: 116 LTSCP 120
Sbjct: 623 TQDIR 627
Score = 41.2 bits (97), Expect = 8e-05
Identities = 22/186 (11%), Positives = 44/186 (23%), Gaps = 30/186 (16%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP---LNKCRQLNTLH 62
L ++ ++ L++ LE L L S+ +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-----QSWPHLRVLRLHSNHLT 117
+ + L + I+S P + + SN++T
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 118 SCP-TLYLSSSLRVLDLSYNH--------------LERLNLNTLIP------KQLQYLDV 156
+ + LR + + E K L ++V
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256
Query: 157 SGNPRL 162
P L
Sbjct: 257 YNCPNL 262
Score = 40.4 bits (95), Expect = 1e-04
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 11/143 (7%)
Query: 28 SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCI-SAWSEMEE 84
SLN+ R + L L + P + + +L L + + S
Sbjct: 76 SLNSNGR-VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLN 144
T P L + + S P + L + +L+ N
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 145 -TLIPK------QLQYLDVSGNP 160
T + K +L+ + +P
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSP 217
Score = 37.3 bits (87), Expect = 0.001
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 7 LQNSSKLKVLNISKN-------CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLN 59
NSS LK I L+ P L +L + SN + + ++
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKITPNIS 590
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN 97
L + N S+ + + + E +L + +
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 75.3 bits (185), Expect = 1e-16
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 9/158 (5%)
Query: 34 RYLEKLYLTSNALTDIGP---LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN 90
Y L L+ N L+ + + L++L +++N + + + L LS N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 91 GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP 148
+ +L + L VL L++NH+ + L+ L LS N + R + +
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 149 ----KQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQL 182
+L LD+S N + + ++V+ + L
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
Score = 70.6 bits (173), Expect = 6e-15
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 12/163 (7%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGP--LNKCRQLNTLHVAY 65
S +L++S N L L + R L L L+ N L I L L ++
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----- 120
N + +L + S +E L+L N I + + L+ L L N ++ P
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 121 TLYLSSSLRVLDLSYNHLERL---NLNTLIPKQLQYLDVSGNP 160
L +LDLS N L++L +L L L + NP
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200
Score = 44.8 bits (106), Expect = 4e-06
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 27/154 (17%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ L+VL + N + ++ QL L+++ N
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDR---------------------NAFEDMAQLQKLYLSQN 146
Query: 67 AITSLPDNCISAWSEM---EELVLSGNGISSLPNTIPQSWPHL--RVLRLHSNHLT-SCP 120
I+ P I +++ L LS N + LP T Q P L LH+N L C
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206
Query: 121 TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYL 154
L S + LS + +L + K+L +
Sbjct: 207 LYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI 240
Score = 31.0 bits (70), Expect = 0.22
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
L + P L S +LDLS+N+L RL L L +S N
Sbjct: 26 SKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 74.5 bits (183), Expect = 3e-16
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 28/197 (14%)
Query: 6 FLQNSSKLKVLNISKNCLKMLP----------------SLNNENRYLEKLYLTSNALTDI 49
+ KL+ L++ N L + +L N ++L+ N L ++
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416
Query: 50 GPLN---KCRQLNTLHVAYNAITSLPDNCISAWSE-MEELVLSGNGI-----SSLPNTIP 100
L + L L + N +S + + + +E+L L N + + L +
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476
Query: 101 QSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSG 158
+ HL+VL L+ N+L S P S ++LR L L+ N L L+ N L P L+ LD+S
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISR 535
Query: 159 NPRLHVDPNHFKSYRSY 175
N L +P+ F S
Sbjct: 536 NQLLAPNPDVFVSLSVL 552
Score = 72.1 bits (177), Expect = 2e-15
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
S ++ L++S + L S E + L+ L L N + I L L+++YN
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+ L + ++ + L N I+ + + + L+ L L N LT+ +
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI---P 381
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
S+ + LS N L L L + +S N ++D +F
Sbjct: 382 SIPDIFLSGNKLVTLPKINL---TANLIHLSENRLENLDILYF 421
Score = 71.0 bits (174), Expect = 6e-15
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 21/157 (13%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLN--NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
FL L++L +++N +EN LE+L+L N L
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE------------ 468
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
T L + S ++ L L+ N ++SLP + LR L L+SN LT
Sbjct: 469 -----TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
L ++L +LD+S N L N + L LD++ N
Sbjct: 524 LPANLEILDISRNQLLAPNPDVF--VSLSVLDITHNK 558
Score = 70.2 bits (172), Expect = 1e-14
Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 23/176 (13%)
Query: 7 LQNSSKLKVLNISKNCLKMLPS-LNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ LKVLN++ N + + L+ L L+ N L ++ ++ + +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPN---------------TIPQSWPHLRV 108
N I + D +++ L L N ++++ T+P+ +
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 109 LRLHSNHLTSCPTLYLS---SSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
+ L N L + LY L++L L+ N + + L+ L + N
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Score = 69.8 bits (171), Expect = 1e-14
Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 9/145 (6%)
Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGI 92
E+L L+ N + + QL L + ++ + L L + I
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP----TLYLSSSLRVLDLSYNHLERLNLNTLIP 148
L Q HL LRL+ L+ +L LDLS N + L L+
Sbjct: 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145
Query: 149 --KQLQYLDVSGNPRLHVDPNHFKS 171
L+ +D S N V + +
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEP 170
Score = 66.4 bits (162), Expect = 2e-13
Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 29/194 (14%)
Query: 7 LQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDI----GPLNKCRQLNTL 61
+N L++L++ + + L +L +L L L+D G + L L
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128
Query: 62 HVAYNAITSLPDN-CISAWSEMEELVLSGNGISSLPNTI--PQSWPHLRVLRLHSNHLTS 118
++ N I SL + + ++ + S N I + P L L +N L S
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188
Query: 119 --------CPTLYLSSSLRVLDLSYNHLERLNLNTLI-------------PKQLQYLDVS 157
C + + L +LD+S N +
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Query: 158 GNPRLHVDPNHFKS 171
+ D N F
Sbjct: 249 FHNIKDPDQNTFAG 262
Score = 65.6 bits (160), Expect = 4e-13
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 12/176 (6%)
Query: 8 QNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALT---DIGPLNKCRQLNTLHV 63
Q + + L +S N ++ + + + L+ L L S D L L +
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISS--LPNTIPQSWPHLRVLRLHSNHLTS--- 118
+ I L + + EL L G+S L + ++ L L L N + S
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 119 CPTLYLSSSLRVLDLSYNHLERLN---LNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
P+ +SL+ +D S N + + L L K L + ++ N +
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196
Score = 63.3 bits (154), Expect = 2e-12
Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 18/181 (9%)
Query: 7 LQNSSKLKVLNISKNCLKML--PSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
+L++L + + L L L S+ + + P L L
Sbjct: 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103
Query: 63 VAYNAITS--LPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTSC 119
+ + ++ L D + L LS N I SL + L+ + SN +
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163
Query: 120 PTLYLSS----SLRVLDLSYNHLERLN-------LNTLIPKQLQYLDVSGNPRLHVDPNH 168
L +L L+ N L +N L+ LDVSGN +
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223
Query: 169 F 169
F
Sbjct: 224 F 224
Score = 59.8 bits (145), Expect = 4e-11
Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 31/199 (15%)
Query: 7 LQNSSKLKVLNISKNCLK---MLPSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNT 60
Q L L + L + + L +L L+ N + + K L +
Sbjct: 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152
Query: 61 LHVAYNAITSLPDNCISAWSEM--EELVLSGNGISSLPNTIPQSWP------HLRVLRLH 112
+ + N I + ++ + L+ N + S + L +L +
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212
Query: 113 SNHLTSCPT--------------LYLSSSLRVLDLSYNHLERLNLNT---LIPKQLQYLD 155
N T T L L+ + +++++ + NT L +++LD
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 156 VSGNPRLHVDPNHFKSYRS 174
+S ++ F++ +
Sbjct: 273 LSHGFVFSLNSRVFETLKD 291
Score = 59.8 bits (145), Expect = 4e-11
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 29/195 (14%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNN--ENRYLEKLYLTSNALTDIGPLN----KCRQLN 59
+ +N L L++SKN ++ L + + L+ + +SN + + + + L+
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177
Query: 60 TLHVAYNAITSLPDNCISAWSE------MEELVLSGNGISSLP-----NTIPQS------ 102
+A N++ S +E L +SGNG + N I +S
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 103 -WPHLRVLRLHSNHLTSCPTLYLS----SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDV 156
H+ +++ + SS+R LDLS+ + LN K L+ L++
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 157 SGNPRLHVDPNHFKS 171
+ N + F
Sbjct: 298 AYNKINKIADEAFYG 312
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 74.1 bits (182), Expect = 5e-16
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 6/170 (3%)
Query: 11 SKLKVLNISKNCLKMLPSL-NNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
S + + N + + +M+ L ++ L ++N LTD +L TL + N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 68 ITSLPDNC--ISAWSEMEELVLSGNGISSLPNTIPQSWP-HLRVLRLHSNHLTSCPTLYL 124
+ L + +++L +S N +S SW L L + SN LT L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
++VLDL N ++ + + + LQ L+V+ N V F S
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469
Score = 60.6 bits (147), Expect = 2e-11
Identities = 29/162 (17%), Positives = 47/162 (29%), Gaps = 14/162 (8%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
+ LQ + + S LK L + ++ +N +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKAL--------SIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
+ + C S S L S N ++ L L L N L +
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367
Query: 124 LS----SSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGN 159
SL+ LD+S N + K L L++S N
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Score = 55.6 bits (134), Expect = 1e-09
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 58 LNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT 117
L+++ N I+ L + I + S++ L++S N I L ++ + L L L N L
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK--QLQYLDVSGN 159
+L+ LDLS+N + L + QL++L +S
Sbjct: 83 KISCHPT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Score = 54.5 bits (131), Expect = 3e-09
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 8/137 (5%)
Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
L ++ N ++++ + +L L +++N I L + E+E L LS N +
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 94 SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS---SLRVLDLSYNHLERLNLNTLIPKQ 150
+ +L+ L L N + P L+ L LS HLE+ ++ +
Sbjct: 83 KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 151 LQYLDVSGNPRLHVDPN 167
+ + + +
Sbjct: 140 ISKVLLVLGETYGEKED 156
Score = 49.5 bits (118), Expect = 1e-07
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 3/146 (2%)
Query: 11 SKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT 69
SKL++L IS N ++ L N+ LE L L+ N L I + L L +++NA
Sbjct: 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFD 103
Query: 70 SLPDN-CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL 128
+LP S+++ L LS + +VL +
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163
Query: 129 RVLDLSYNHLERLNLNTLIPKQLQYL 154
L + ++ ++ +
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTV 189
Score = 45.2 bits (107), Expect = 3e-06
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
L+ L+IS+N + + + L L ++SN LTD ++ L + N I
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI 433
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
S+P + ++EL ++ N + S+P+ I L+ + LH+N
Sbjct: 434 KSIPKQVVKL-EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 73.9 bits (181), Expect = 6e-16
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
++ L +++ L LP + L +T NAL + L L L N +++
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALISLPELPA--SLEYLDACDNRLST 114
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
LP+ + ++ L + N ++ LP L + +N LT P L +SL V
Sbjct: 115 LPEL----PASLKHLDVDNNQLTMLPELPAL----LEYINADNNQLTMLPE--LPTSLEV 164
Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L + N L L +P+ L+ LDVS N
Sbjct: 165 LSVRNNQLTFL---PELPESLEALDVSTN 190
Score = 72.3 bits (177), Expect = 2e-15
Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
++ VL I++N L LP L LE L N L+ + L L L V N +T
Sbjct: 80 PQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTM 134
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
LP+ + +E + N ++ LP L VL + +N LT P L SL
Sbjct: 135 LPE----LPALLEYINADNNQLTMLPELPT----SLEVLSVRNNQLTFLPE--LPESLEA 184
Query: 131 LDLSYNHLERL----NLNTLIPKQLQYLDVSGN 159
LD+S N LE L N + + N
Sbjct: 185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217
Score = 69.2 bits (169), Expect = 2e-14
Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
+ LK L++ N L MLP L LE + +N LT + L L V N +T
Sbjct: 120 ASLKHLDVDNNQLTMLPELPAL---LEYINADNNQLTML--PELPTSLEVLSVRNNQLTF 174
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQ---SWPHLRVLRLHSNHLTSCP-TLYLSS 126
LP+ S +E L +S N + SLP + S R N +T P +
Sbjct: 175 LPELPES----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH 168
+ L N L +L + Q +
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272
Score = 63.8 bits (155), Expect = 2e-12
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
S+ N S ++ N + Q + L + ++S
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
LPD + ++ L ++ N + SLP L L N L++ P L +SL+
Sbjct: 74 LPD---NLPPQITVLEITQNALISLPELPAS----LEYLDACDNRLSTLPE--LPASLKH 124
Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
LD+ N L L +P L+Y++ N
Sbjct: 125 LDVDNNQLTMLP---ELPALLEYINADNN 150
Score = 50.7 bits (121), Expect = 4e-08
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 9/141 (6%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALT----DIGPLNKCRQLNT-LHVAY 65
+ L+VL++ N L LP L LE L +++N L + +
Sbjct: 160 TSLEVLSVRNNQLTFLPELPES---LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N IT +P+N I + ++L N +SS + + +
Sbjct: 217 NRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275
Query: 126 SSLRVLDLSYNHLERLNLNTL 146
+ D + +
Sbjct: 276 LHRPLADAVTAWFPENKQSDV 296
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 70.5 bits (173), Expect = 9e-16
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
N+ + + L++ + ++ +L + + + N + + R+L TL V N
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCP----- 120
I + + A ++ EL+L+ N + L + P S L L + N +T+
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 134
Query: 121 TLYLSSSLRVLD 132
+Y +RVLD
Sbjct: 135 VIYKVPQVRVLD 146
Score = 54.3 bits (131), Expect = 9e-10
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 41 LTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP 100
LT+ + + L + I + +N + + + + S N I L
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF-- 60
Query: 101 QSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP----KQLQYL 154
L+ L +++N + + L L L+ N L L L P K L YL
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV--ELGDLDPLASLKSLTYL 118
Query: 155 DVSGNPRLHVDPNHFKSYRSYV 176
+ NP + K YR YV
Sbjct: 119 CILRNP-----VTNKKHYRLYV 135
Score = 29.6 bits (67), Expect = 0.41
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 108 VLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
+++L + + + R LDL + + NL + Q +D S N
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDN 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 72.7 bits (179), Expect = 1e-15
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 30/171 (17%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
LQNSS LK++++ N LK LP L LE + +N L ++ L L ++ N
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLEELPELQNLPFLTAIYADNN 205
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPN------------------TIPQSWPHLRV 108
++ LPD +S +E +V N + LP T+P P L
Sbjct: 206 SLKKLPDLPLS----LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261
Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L + N+LT P L SL LD+S N L + +P L YL+ S N
Sbjct: 262 LNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL---SELPPNLYYLNASSN 307
Score = 65.0 bits (159), Expect = 5e-13
Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 32/176 (18%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTL 61
L + L ++ L LP +LE L + N+LT++ + L
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVD 119
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN------------------TIPQSW 103
+ A++ LP +E L +S N + LP +P
Sbjct: 120 NNNLKALSDLPPL-------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 172
Query: 104 PHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
P L + +N L P L L + N L++L P L+ + N
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN 225
Score = 62.7 bits (153), Expect = 3e-12
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
L+ + N L+ LP L N +L +Y +N L + L L L+V N +T
Sbjct: 215 LSLESIVAGNNILEELPELQN-LPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTD 271
Query: 71 LPDNCISAWSEMEELVLSGNGISSLP-------------NTIPQSWPHLRVLRLHSNHLT 117
LP+ + + ++ +G+S LP ++ P L L + +N L
Sbjct: 272 LPE-LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330
Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
P L L L S+NHL + +P+ L+ L V NP
Sbjct: 331 ELPA--LPPRLERLIASFNHLAEV---PELPQNLKQLHVEYNP 368
Score = 61.2 bits (149), Expect = 1e-11
Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 38/180 (21%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL---------------NKC 55
+ L+ + L +P + + Y + P
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP----------------NTI 99
RQ + L + ++SLP+ +E LV S N ++ LP +
Sbjct: 71 RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126
Query: 100 PQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
P L L + +N L P L SS L+++D+ N L++L P L+++ N
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN 183
Score = 59.6 bits (145), Expect = 4e-11
Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 33/178 (18%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
L L++S+N L L L L +SN + + L L L+V+ N +
Sbjct: 277 QSLTFLDVSENIFSGLSELPPN---LYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE 331
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL-------- 122
LP +E L+ S N ++ +P +L+ L + N L P +
Sbjct: 332 LPALP----PRLERLIASFNHLAEVPELPQ----NLKQLHVEYNPLREFPDIPESVEDLR 383
Query: 123 ---------YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
L +L+ L + N L IP+ ++ L ++ + ++
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREF---PDIPESVEDLRMNSERVVDPYEFAHET 438
Score = 55.8 bits (135), Expect = 9e-10
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
L+ LN+S N L LP+L LE+L + N L ++ L + L LHV YN +
Sbjct: 317 PSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPEL--PQNLKQLHVEYNPLRE 371
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
PD +E+L ++ + ++ +P +L+ L + +N L P + S+
Sbjct: 372 FPDIP----ESVEDLRMN-SHLAEVPELPQ----NLKQLHVETNPLREFPD--IPESVED 420
Query: 131 LDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
L ++ + DV + H
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 52.7 bits (127), Expect = 9e-09
Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 25/145 (17%)
Query: 30 NNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLPDNCISAWSEM------ 82
N N +L++ S+ LT++ + + A++ EM
Sbjct: 7 NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 83 -------EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLRVLDLS 134
EL L+ G+SSLP PHL L N LT P L S SL V + +
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNN 122
Query: 135 YNHLERLNLNTLIPKQLQYLDVSGN 159
L L P L+YL VS N
Sbjct: 123 LKALSDL------PPLLEYLGVSNN 141
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 70.8 bits (174), Expect = 2e-15
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ S ++ N + ++ L + L++L+L+ N ++D+ PL +L L V N
Sbjct: 37 QKELSGVQNFNGDNSNIQSLAGMQF-FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+ +L + + L L N + + +L +L + +N L S L S
Sbjct: 96 RLKNLNG---IPSACLSRLFLDNNELRDTDSL--IHLKNLEILSIRNNKLKSIVMLGFLS 150
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
L VLDL N + L L K++ ++D++G
Sbjct: 151 KLEVLDLHGNEITNTGGLTRL--KKVNWIDLTGQK 183
Score = 62.7 bits (153), Expect = 2e-12
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L++ +KL+ L++++N LK L + + L +L+L +N L D L + L L + N
Sbjct: 81 LKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+ S+ + S++E L L GN I++ + + L + P +
Sbjct: 139 KLKSIVM--LGFLSKLEVLDLHGNEITNTGGL--TRLKKVNWIDLTGQKCVNEP-VKYQP 193
Query: 127 SLRVLDLSYN 136
L + + +
Sbjct: 194 ELYITNTVKD 203
Score = 58.1 bits (141), Expect = 9e-11
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
K L ++TD+ + + + + I SL + ++ ++EL LS N IS L
Sbjct: 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDL 78
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYL 154
+ L L ++ N L + + + L L L N L +L L K L+ L
Sbjct: 79 SPL--KDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHL--KNLEIL 133
Query: 155 DVSGN 159
+ N
Sbjct: 134 SIRNN 138
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 71.3 bits (175), Expect = 2e-15
Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 8/155 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+Q + L L + N + L L N + +L L+ N L ++ + + + TL +
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLKN-LTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
IT + ++ S ++ L L N I+++ +L+ L + + ++ L S
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGNAQVSDLTPLANLS 173
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
L L N + + L +L L + + N
Sbjct: 174 KLTTLKADDNKISDISPLASL--PNLIEVHLKNNQ 206
Score = 69.3 bits (170), Expect = 1e-14
Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ +K L+++ + + L L+ LYL N +T+I PL L L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAG-LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
++ L ++ S++ L N IS + S P+L + L +N ++ L +S
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTS 217
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
+L ++ L+ + N L +V P
Sbjct: 218 NLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGP 249
Score = 68.6 bits (168), Expect = 2e-14
Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 8/155 (5%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
+ + L+ + + + L L L N +TD+ PL ++ L ++
Sbjct: 36 TQADLDGITTLSAFGTGVTTIEGVQY-LNNLIGLELKDNQITDLAPLKNLTKITELELSG 94
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N + ++ I+ ++ L L+ I+ + +L+VL L N +T+ L
Sbjct: 95 NPLKNVSA--IAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQITNISPLAGL 150
Query: 126 SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
++L+ L + + L L L +L L N
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANL--SKLTTLKADDN 183
Score = 67.8 bits (166), Expect = 4e-14
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 8/154 (5%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ + K+ + + + + + L +T I + L L + N
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQADLDG-ITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
IT L + +++ EL LSGN + ++ ++ L L S +T L S
Sbjct: 74 QITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLS 129
Query: 127 SLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
+L+VL L N + + L L LQYL +
Sbjct: 130 NLQVLYLDLNQITNISPLAGL--TNLQYLSIGNA 161
Score = 55.1 bits (133), Expect = 1e-09
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + L+ L+I + L L N L L N ++DI PL L +H+ N
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLAN-LSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I+ + ++ S + + L+ I++ P + V++ S + T+ +
Sbjct: 206 QISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263
Query: 127 SLRVLDLSYNHLERLN 142
+ +L++N +N
Sbjct: 264 TYASPNLTWNLTSFIN 279
Score = 48.5 bits (116), Expect = 2e-07
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 43 SNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQS 102
A+ I P + + +T + + L G G++++ Q
Sbjct: 6 PTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGV--QY 61
Query: 103 WPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
+L L L N +T L + + L+LS N L+ + + L + ++ LD++
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGL--QSIKTLDLTST 117
Score = 30.4 bits (69), Expect = 0.25
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
L + L +++ N + + L N L + LT+ +T+ + V
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLAN-TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPN 97
+ + IS L+ N S + N
Sbjct: 249 PSGAPIAPATISDNGTYASPNLTWNLTSFINN 280
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 70.8 bits (174), Expect = 3e-15
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 25/177 (14%)
Query: 13 LKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY 65
K L++S N L+ L S L+ L L+ + I G L+TL +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT---- 121
N I SL S S +++LV ++SL N L+ L + N + S
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 122 --LYLSSSLRVLDLSYNHLERLNLNTL-----IPKQLQYLDVSGNPRLHVDPNHFKS 171
L ++L LDLS N ++ + L +P LD+S NP + P FK
Sbjct: 146 SNL---TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 68.8 bits (169), Expect = 1e-14
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 18/163 (11%)
Query: 11 SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
+L+VL++S+ ++ + L++ L L LT N + + G + L L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSH----LSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTSCPT- 121
+ SL + I ++EL ++ N I S + +L L L SN + S
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 122 -----LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ LDLS N + + +L+ L + N
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210
Score = 65.4 bits (160), Expect = 2e-13
Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 18/164 (10%)
Query: 11 SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
S L L ++ N ++ L L++ L+KL L + P+ + L L+V
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSS----LQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 64 AYNAITSLPDNCISAW-SEMEELVLSGNGISSLPNTIPQSWPHLRV----LRLHSNHLTS 118
A+N I S + + +E L LS N I S+ T + + + L L N +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 119 CPTLYLSS-SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
L+ L L N L+ + LQ + + NP
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Score = 54.2 bits (131), Expect = 2e-09
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 8 QNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI---GPLNKCRQLN 59
S L+ L + L L + L L++L + N + + L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKT----LKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 60 TLHVAYNAITSLPDNCISAWSEME----ELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
L ++ N I S+ + +M L LS N ++ + + L+ L L +N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQ 211
Query: 116 LTSCP--TLYLSSSLRVLDLSYN 136
L S P +SL+ + L N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234
Score = 27.2 bits (61), Expect = 2.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
+ P L S + LDLS+N L L + +LQ LD+S
Sbjct: 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 71.3 bits (175), Expect = 3e-15
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 8/160 (5%)
Query: 9 NSSKLKVLNISKNCLKMLPSL---NNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
++S + K + E ++ L+ + + + + L L +
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
A N I + DN + + +L LS N + S+ + + ++ L VL L NH+ +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366
Query: 124 LS--SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+L+ L L N L+ + LQ + + NP
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
Score = 57.4 bits (139), Expect = 2e-10
Identities = 41/192 (21%), Positives = 56/192 (29%), Gaps = 32/192 (16%)
Query: 8 QNSSKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI----GPLNKCRQL 58
+ S L +L + N L L N LE L LT L L
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLAN----LEVLTLTQCNLDGAVLSGNFFKPLTSL 131
Query: 59 NTLHVAYNAITSL-PDNCISAWSEMEELVLSGNGISSLPNTI--PQSWPHLRVLRLHSNH 115
L + N I + P + L L+ N + S+ H +LRL S
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 116 LTSCPTLYLSS----------SLRVLDLSYNHLERL------NLNTLIPKQLQYLDVSGN 159
L +L S+ LDLS N + + Q L S N
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 160 PRLHVDPNHFKS 171
+FK
Sbjct: 252 MGSSFGHTNFKD 263
Score = 57.1 bits (138), Expect = 3e-10
Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 9/134 (6%)
Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAI-TSLPDNCISAWSEMEELVLSGNGI 92
+ + L+ N++ ++ ++ + L L V + +N S + L L N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCP----TLYLSSSLRVLDLSYNHLERLNLNTLIP 148
L +L VL L +L +SL +L L N+++++ +
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 149 K--QLQYLDVSGNP 160
+ LD++ N
Sbjct: 152 NMRRFHVLDLTFNK 165
Score = 55.5 bits (134), Expect = 1e-09
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 8 QNSSKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDI--GPLNKCRQLNT 60
+ + L+ L +++N + + L + L KL L+ N L I +L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTH----LLKLNLSQNFLGSIDSRMFENLDKLEV 351
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SC 119
L ++YN I +L D ++EL L N + S+P+ I L+ + LH+N SC
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411
Query: 120 PT-LYLSSSLR 129
P YLS L
Sbjct: 412 PRIDYLSRWLN 422
Score = 44.0 bits (104), Expect = 9e-06
Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 21/153 (13%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP---LNKCRQLNT 60
L L L +S N K L SL E L L N + I P R+ +
Sbjct: 107 VLTL-TQCNLDGAVLSGNFFKPLTSL-------EMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 61 LHVAYNAITSLPDNCIS--AWSEMEELVLSGNGISSLPNTIPQSWP--------HLRVLR 110
L + +N + S+ + + L LS + + + L
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218
Query: 111 LHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNL 143
L N ++ + L
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 69.9 bits (171), Expect = 6e-15
Identities = 44/168 (26%), Positives = 60/168 (35%), Gaps = 13/168 (7%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPL------NKCR 56
EL LKVL+I++ L L L+ N L K
Sbjct: 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEM---EELVLSGNGISSLPNTIPQSWP-HLRVLRLH 112
L L + + + C + + + L LS N + WP L L L
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261
Query: 113 SNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
L P L + L VLDLSYN L+R +P Q+ L + GNP
Sbjct: 262 FTGLKQVPK-GLPAKLSVLDLSYNRLDRNPSPDELP-QVGNLSLKGNP 307
Score = 58.0 bits (140), Expect = 1e-10
Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 14/144 (9%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNEN-----RYLEKLYLTSNALTDIGP-----LNKC 55
++ L L++S N L + L+ L L + +
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 56 RQLNTLHVAYNAITSLPDNCISAW-SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
QL L +++N++ W S++ L LS G+ +P +P L VL L N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYN 284
Query: 115 HLTSCPTLYLSSSLRVLDLSYNHL 138
L P+ + L L N
Sbjct: 285 RLDRNPSPDELPQVGNLSLKGNPF 308
Score = 44.5 bits (105), Expect = 5e-06
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 36 LEKLYLTSNALTDIGPLN----KCRQLNTLHVAYNAITSLPD--NCISAWSE--MEELVL 87
L++L L + +T P LN L++ + + + W + ++ L +
Sbjct: 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156
Query: 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS------SSLRVLDLSYNHLERL 141
+ + + +P L L L N L + +L+VL L +E
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 142 NLN----TLIPKQLQYLDVSGN 159
+ QLQ LD+S N
Sbjct: 217 SGVCSALAAARVQLQGLDLSHN 238
Score = 43.7 bits (103), Expect = 1e-05
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 1 MALELFLQNSSKLKVLNISKNCLKMLP----SLNNENRYLEKLYLTSNALTDIGPLNKC- 55
+ L L+VL + ++ +L L+ L L+ N+L D C
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
Query: 56 --RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
QLN+L++++ + +P +++ L LS N + P P P + L L
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKG---LPAKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKG 305
Query: 114 NHLT 117
N
Sbjct: 306 NPFL 309
Score = 39.1 bits (91), Expect = 4e-04
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 15/149 (10%)
Query: 29 LNNENRYLEKLYLTSNALTDIGPLN------KCRQLNTLHVAYNAITSLPDNCISAWSEM 82
L R LE L + D+G ++L + + S +
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 83 EELVLSGNGIS--SLPNTIPQSWPHLRVLRLHSNHLTSCPTL------YLSSSLRVLDLS 134
+EL L ++ + P + + P L +L L + + +L L+VL ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 135 YNHLERLNLNTLIP-KQLQYLDVSGNPRL 162
H + + L LD+S NP L
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 69.5 bits (170), Expect = 2e-14
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 8/171 (4%)
Query: 11 SKLKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNA 67
+++ + +S + + + L T N TD + ++L TL + N
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQ---SWP-HLRVLRLHSNHLTSCPTLY 123
+ + M L ++SL + +W + VL L SN LT
Sbjct: 389 LKNFFK-VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
L ++VLDL N + + + + LQ L+V+ N V F S
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498
Score = 54.9 bits (132), Expect = 2e-09
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 14/159 (8%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ + S+ LK L + +N+ + ++N ++ +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFS--------KEALYSVFAEMNIKMLSIS 339
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL-YLS 125
+ C + S L + N + + L+ L L N L + + ++
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 126 SSLRVLDLSYNHLERLN-----LNTLIPKQLQYLDVSGN 159
++ L+ L LN + + L++S N
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Score = 51.4 bits (123), Expect = 3e-08
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
L ++ N+I+ L IS SE+ L LS N I SL + L L + N L +
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 120 PTLYLSSSLRVLDLSYNHLERLNLNTLIPK--QLQYLDVSGNPRLHVDPNHFKS 171
+ +SLR LDLS+N + L + +L +L +S +D
Sbjct: 116 SCCPM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Score = 50.6 bits (121), Expect = 6e-08
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 36 LEKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
+ L L+ N+++++ ++ +L L +++N I SL + ++E L +S N +
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 94 SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL---SSSLRVLDLSYNHLERLNLNTLIPKQ 150
++ LR L L N P + L L LS +L+L +
Sbjct: 114 NIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 151 LQYL 154
L +
Sbjct: 171 LSCI 174
Score = 46.0 bits (109), Expect = 2e-06
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 6/138 (4%)
Query: 11 SKLKVLNISKNCLKMLP-SLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT 69
S+L+VL +S N ++ L + N+ LE L ++ N L +I L L +++N
Sbjct: 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCCPMASLRHLDLSFNDFD 134
Query: 70 SLPDNCI-SAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL 128
LP +++ L LS L HL + + + ++ + SL
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESL 191
Query: 129 RVLDLSYNHLERLNLNTL 146
++ + + HL +
Sbjct: 192 QIPNTTVLHLVFHPNSLF 209
Score = 39.5 bits (92), Expect = 3e-04
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 11 SKLKVLNISKNCLKMLPSLNNEN-----RYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
+ L L L S + + L L+SN LT ++ L +
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
N I S+P + ++ ++EL ++ N + S+P+ + L+ + LH N
Sbjct: 460 NRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 29.8 bits (67), Expect = 0.50
Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 13/182 (7%)
Query: 8 QNSSKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTSNALTDIGPLN-KCRQLNTLHVA 64
N +KL L +S + L + + + L L S + + + LH+
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW-------PHLRVLRLHSNHLT 117
++ + + + + L LS ++ ++ P L + L T
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262
Query: 118 SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPK---QLQYLDVSGNPRLHVDPNHFKSYRS 174
++ L + Y ++ L + I + + HV F +
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322
Query: 175 YV 176
+
Sbjct: 323 AL 324
Score = 27.1 bits (60), Expect = 3.3
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN 66
K+KVL++ N + +P + L++L + SN L + G ++ L + + N
Sbjct: 449 PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 69.3 bits (170), Expect = 2e-14
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
++ + L L + N + L N N L L SN LT++ + +L L+ N
Sbjct: 60 IEKLTGLTKLICTSNNITTLDLSQNTN--LTYLACDSNKLTNL-DVTPLTKLTYLNCDTN 116
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+T L +S + L + N ++ + + L L H N + + +
Sbjct: 117 KLTKLD---VSQNPLLTYLNCARNTLTEIDVS---HNTQLTELDCHLNKKITKLDVTPQT 170
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L LD S+N + L+++ K L L+ N
Sbjct: 171 QLTTLDCSFNKITELDVSQN--KLLNRLNCDTN 201
Score = 68.2 bits (167), Expect = 5e-14
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 11/168 (6%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L + +KL LN N L L N L L N LT+I ++ QL L
Sbjct: 99 NLDVTPLTKLTYLNCDTNKLTKLDVSQNPL--LTYLNCARNTLTEI-DVSHNTQLTELDC 155
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
N + D ++ +++ L S N I+ L + L L +N++T L
Sbjct: 156 HLNKKITKLD--VTPQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNITK-LDLN 209
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
+ L LD S N L +++ L QL Y D S NP +D +
Sbjct: 210 QNIQLTFLDCSSNKLTEIDVTPL--TQLTYFDCSVNPLTELDVSTLSK 255
Score = 67.4 bits (165), Expect = 9e-14
Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 11/168 (6%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
+L + + L LN ++N L + +N L +L N + QL TL
Sbjct: 120 KLDVSQNPLLTYLNCARNTLTEIDVSHNTQ--LTELDCHLNKKITKLDVTPQTQLTTLDC 177
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
++N IT L +S + L N I+ L L L SN LT
Sbjct: 178 SFNKITELD---VSQNKLLNRLNCDTNNITKLDLN---QNIQLTFLDCSSNKLTEIDVTP 231
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKS 171
L+ L D S N L L+++TL +L L L +D H
Sbjct: 232 LTQ-LTYFDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEIDLTHNTQ 276
Score = 66.2 bits (162), Expect = 2e-13
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 11/156 (7%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
L L ++ L L N L L L L +N LT + +++ L L+
Sbjct: 78 TLDLSQNTNLTYLACDSNKLTNLDVTPLTK--LTYLNCDTNKLTKL-DVSQNPLLTYLNC 134
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
A N +T + +S +++ EL N + + PQ L L N +T
Sbjct: 135 ARNTLTEID---VSHNTQLTELDCHLNKKITKLDVTPQ--TQLTTLDCSFNKITELDVSQ 189
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L L+ N++ +L+LN QL +LD S N
Sbjct: 190 N-KLLNRLNCDTNNITKLDLNQN--IQLTFLDCSSN 222
Score = 62.8 bits (153), Expect = 4e-12
Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 14/158 (8%)
Query: 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
SKL L+ + L + +N L + QL L I
Sbjct: 252 TLSKLTTLHCIQTDLLEIDLTHNTQ--LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL 128
T L +S ++ L L+ ++ L L+ L + H+ ++ +L
Sbjct: 310 TELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPAL 363
Query: 129 RVLDLSYNHLERLNLNTLIPKQL------QYLDVSGNP 160
+ + TL L LD GNP
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401
Score = 62.4 bits (152), Expect = 4e-12
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 11/154 (7%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L + +L L+ S N L + L + N LT++ ++ +L TLH
Sbjct: 208 LNQNIQLTFLDCSSNKLTEIDVTPLTQ--LTYFDCSVNPLTEL-DVSTLSKLTTLHCIQT 264
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+ + ++ +++ G + L +L + +T
Sbjct: 265 DLLEID---LTHNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGITELDLSQN-P 318
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
L L L+ L L+++ +L+ L
Sbjct: 319 KLVYLYLNNTELTELDVSHN--TKLKSLSCVNAH 350
Score = 60.9 bits (148), Expect = 2e-11
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA 67
N + + L L ++++TD+ + K L L N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLAT--LTSLDCHNSSITDMTGIEKLTGLTKLICTSNN 75
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS 127
IT+L +S + + L N +++L L L +N LT
Sbjct: 76 ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQN-PL 128
Query: 128 LRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP 166
L L+ + N L ++++ QL LD N ++
Sbjct: 129 LTYLNCARNTLTEIDVSHN--TQLTELDCHLNKKITKLD 165
Score = 48.9 bits (117), Expect = 2e-07
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 5/146 (3%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHV 63
EL + ++++L +L+ + L N L LYL + LT++ ++ +L +L
Sbjct: 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPK--LVYLYLNNTELTEL-DVSHNTKLKSLSC 346
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLY 123
I + + + ++P + + P
Sbjct: 347 VNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPK 149
V D + N + NL+T P
Sbjct: 405 EPGDGGVYDQATNTITWENLSTDNPA 430
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 68.1 bits (167), Expect = 2e-14
Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 38/182 (20%)
Query: 13 LKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAY 65
K L++ N L LP L L LYL N L + G + + L TL V
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTK----LRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----- 120
N + +LP + EL L N + SLP + S L L L N L S P
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 121 ------TLYLSS---------------SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSG 158
L L + L+ L L N L+R+ ++L+ L +
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 159 NP 160
NP
Sbjct: 215 NP 216
Score = 39.6 bits (93), Expect = 2e-04
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 11 SKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHV 63
+KL L++ N L+ LP L + L++L L +N L + G +K +L TL +
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTS----LKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGN 90
N + +P+ + +++ L L N
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.0 bits (63), Expect = 1.7
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
S LT+ P+ + + + LDL N L L +L+ L ++ N
Sbjct: 24 SSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 66.6 bits (163), Expect = 5e-14
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 37 EKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
++ L N + I P + ++L + ++ N I+ L + + LVL GN I+
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERLNLNTLIP-KQL 151
LP ++ + L++L L++N + +L +L L N L+ + T P + +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 152 QYLDVSGNP 160
Q + ++ NP
Sbjct: 155 QTMHLAQNP 163
Score = 59.3 bits (144), Expect = 2e-11
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 12/127 (9%)
Query: 11 SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
KL+ +++S N + L L + L L L N +T++ L L +
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRS----LNSLVLYGNKITELPKSLFEGLFSLQLLLL 111
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTL 122
N I L + + L L N + ++ ++ + L N C
Sbjct: 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171
Query: 123 YLSSSLR 129
+L+ L
Sbjct: 172 WLADYLH 178
Score = 43.9 bits (104), Expect = 7e-06
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNH 137
+ E+ L N I +P + LR + L +N ++ SL L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 138 LERLNLNTLIP-KQLQYLDVSGN 159
+ L + LQ L ++ N
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNAN 114
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 68.0 bits (167), Expect = 5e-14
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 7 LQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ L+ L++S N +P L + L+ L ++ N L+ ++ C +L L++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 64 AYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSC-- 119
+ N +P ++ L L+ N + +P+ + + L L L NH
Sbjct: 255 SSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 120 PTLYLSSSLRVLDLSYNHLE----RLNLNTLIPKQLQYLDVSGN 159
P S L L LS N+ L + + L+ LD+S N
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFN 353
Score = 66.9 bits (164), Expect = 2e-13
Identities = 50/167 (29%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 7 LQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGPL-----NKCRQLNT 60
+ ++LK+LNIS N +P L ++ L+ L L N T G + C L
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFT--GEIPDFLSGACDTLTG 298
Query: 61 LHVAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLT- 117
L ++ N ++P + S +E L LS N S LP L+VL L N +
Sbjct: 299 LDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 118 SCPT--LYLSSSLRVLDLSYNHLE---RLNLNTLIPKQLQYLDVSGN 159
P LS+SL LDLS N+ NL LQ L + N
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Score = 64.2 bits (157), Expect = 1e-12
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 39/188 (20%)
Query: 9 NSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHVA 64
L+ L++++N ++ L+ L L L+ N P C L +L ++
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 65 YNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLT----- 117
N + LP + + ++ L LS N S LP ++ L L L SN+ +
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 118 --------SCPTLYLS---------------SSLRVLDLSYNHLE---RLNLNTLIPKQL 151
+ LYL S L L LS+N+L +L +L +L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKL 444
Query: 152 QYLDVSGN 159
+ L + N
Sbjct: 445 RDLKLWLN 452
Score = 63.8 bits (156), Expect = 2e-12
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 6 FLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP----LNKCRQLNT 60
L + + L+ L +S + + + + L L L+ N+L+ L C L
Sbjct: 72 SLLSLTGLESLFLSNSHINGSVSGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130
Query: 61 LHVAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTI--PQSWPHLRVLRLHSNHL 116
L+V+ N + + + +E L LS N IS + L+ L + N +
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 117 TSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-----KQLQYLDVSGN 159
+ + +L LD+S N N +T IP LQ+LD+SGN
Sbjct: 191 SGDVDVSRCVNLEFLDVSSN-----NFSTGIPFLGDCSALQHLDISGN 233
Score = 61.8 bits (151), Expect = 8e-12
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 25/170 (14%)
Query: 7 LQNSSKLKVLNISKNCLK-MLPSLNN--ENRYLEKLYLTSNALTDIGP---LNKCRQLNT 60
+ S+ L L++S+N L + +L + L+ L ++SN L G K L
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 61 LHVAYNAIT-SLPDN--CISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHL 116
L ++ N+I+ + E++ L +SGN IS + +L L + SN+
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNF 212
Query: 117 T-SCPTLYLSSSLRVLDLSYNHLERLNLNTLIP------KQLQYLDVSGN 159
+ P L S+L+ LD+S N L+ +L+ L++S N
Sbjct: 213 STGIPFLGDCSALQHLDISGN-----KLSGDFSRAISTCTELKLLNISSN 257
Score = 60.3 bits (147), Expect = 3e-11
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 23/168 (13%)
Query: 6 FLQNSSKLKVLNISKNCL--KMLPSLNNEN--RYLEKLYLTSNALTDIGPLNKCRQLNTL 61
+ L+VL++S N + + + L+ L ++ N ++ +++C L L
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Query: 62 HVAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLT-S 118
V+ N + +P + S ++ L +SGN +S I L++L + SN
Sbjct: 206 DVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFVGP 262
Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGN 159
P L L SL+ L L+ N IP L LD+SGN
Sbjct: 263 IPPLPL-KSLQYLSLAEN-----KFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 59.9 bits (146), Expect = 3e-11
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENR--YLEKLYLTSNALT-----DIGPLNKCRQLN 59
L + S LK LN+S N L ++ + LE L L++N+++ + C +L
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 60 TLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQ--SWPHLRVLRLHSNHL 116
L ++ N I+ + +S +E L +S N S+ IP L+ L + N L
Sbjct: 182 HLAISGNKISGDVD---VSRCVNLEFLDVSSNNFST---GIPFLGDCSALQHLDISGNKL 235
Query: 117 TSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIP----KQLQYLDVSGN 159
+ + + L++L++S N IP K LQYL ++ N
Sbjct: 236 SGDFSRAISTCTELKLLNISSN-----QFVGPIPPLPLKSLQYLSLAEN 279
Score = 59.2 bits (144), Expect = 6e-11
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 6 FLQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
L N S+L L++S N L +PS L L L N L P L + L TL
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 63 VAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTS-- 118
+ +N +T +P +S + + + LS N ++ +P I +L +L+L +N +
Sbjct: 473 LDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNI 530
Query: 119 CPTLYLSSSLRVLDLSYNHL 138
L SL LDL+ N
Sbjct: 531 PAELGDCRSLIWLDLNTNLF 550
Score = 56.1 bits (136), Expect = 8e-10
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 6 FLQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALT-----DIGPLNKCRQL 58
L LKVL++S N ++ SL N + L L L+SN + ++ K L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-NTL 396
Query: 59 NTLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSW---PHLRVLRLHSN 114
L++ N T +P +S SE+ L LS N +S TIP S LR L+L N
Sbjct: 397 QELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLKLWLN 452
Query: 115 HLTSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIP------KQLQYLDVSGN 159
L L +L L L +N L IP L ++ +S N
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTG-----EIPSGLSNCTNLNWISLSNN 500
Score = 48.0 bits (115), Expect = 5e-07
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 7 LQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGP----LNKCRQLNTL 61
L N + L +++S N L +P L L L++N+ + G L CR L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS--GNIPAELGDCRSLIWL 543
Query: 62 HVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ N ++P ++ ++G + N + N L
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-----DGMKKECHGAGNLLEFQG 598
Query: 121 TLYLS----SSLRVLDLSYNHLERLNLNTL-IPKQLQYLDVSGN 159
S+ +++ T + +LD+S N
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Score = 46.1 bits (110), Expect = 2e-06
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 23/145 (15%)
Query: 33 NRYLEKLYLTSNALT-DIGPLNKC----RQLNTLHVAYNAIT-SLPDNCISAWSEMEELV 86
+ + + L+S L ++ L +L ++ + I S+ + + L
Sbjct: 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLD 106
Query: 87 LSGNGISSLPNTIPQSW-----PHLRVLRLHSNHLT---SCPTLYLSSSLRVLDLSYNHL 138
LS N +S + L+ L + SN L +SL VLDLS N +
Sbjct: 107 LSRNSLSG---PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 139 ERLNLNTLIP----KQLQYLDVSGN 159
N+ + +L++L +SGN
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGN 188
Score = 43.0 bits (102), Expect = 2e-05
Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 25/173 (14%)
Query: 6 FLQNSSKLKVLNISKNCLKM---LPSLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNT 60
+++N K + + N L+ N +TS + +
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 61 LHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR---VLRLHSNHL 116
L ++YN ++ +P I + + L L N IS +IP LR +L L SN L
Sbjct: 637 LDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISG---SIPDEVGDLRGLNILDLSSNKL 692
Query: 117 TSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVS---GNPRL 162
+ + L +DLS N+L IP Q + + NP L
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLS-----GPIPEMGQFETFPPAKFLNNPGL 740
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 66.2 bits (162), Expect = 1e-13
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA 67
+ + + + + +K + + + L L N L DI L + L L + N
Sbjct: 38 NELNSIDQIIANNSDIKSVQGIQYLPN-VRYLALGGNKLHDISALKELTNLTYLILTGNQ 96
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS- 126
+ SLP+ + ++ELVL N + SLP+ + +L L L N L S P
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 127 -SLRVLDLSYNHLERLNLNTLIPK-------QLQYLDVSGN 159
+L LDLSYN L+ L P+ QL+ L + N
Sbjct: 157 TNLTELDLSYNQLQSL------PEGVFDKLTQLKDLRLYQN 191
Score = 47.7 bits (114), Expect = 4e-07
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 35/152 (23%)
Query: 37 EKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLP--------------DNCISAW--- 79
K L ++TD N+ ++ + + I S+ N +
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81
Query: 80 ---SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT--LYLSSSLRVLDLS 134
+ + L+L+GN + SLPN + +L+ L L N L S P ++L L+L+
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 135 YNHLERLNLNTLIPK-------QLQYLDVSGN 159
+N L+ L PK L LD+S N
Sbjct: 142 HNQLQSL------PKGVFDKLTNLTELDLSYN 167
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 62.8 bits (153), Expect = 3e-13
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 8/138 (5%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSLNNENRY--LEKLYLTSNALTDIGPLNKCRQLNT 60
LEL + S +K L + + + + LE L + LT I L K +L
Sbjct: 9 LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKK 68
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSC 119
L ++ N ++ + + L LSGN I L P + +L+ L L + +T+
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128
Query: 120 P-----TLYLSSSLRVLD 132
L L LD
Sbjct: 129 NDYRENVFKLLPQLTYLD 146
Score = 36.6 bits (85), Expect = 0.001
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 80 SEMEELVLSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHL 138
S+++ELVL + + + + L L + LTS L + L+ L+LS N +
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76
Query: 139 ERL--NLNTLIPKQLQYLDVSGN 159
L P L +L++SGN
Sbjct: 77 SGGLEVLAEKCPN-LTHLNLSGN 98
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 65.5 bits (160), Expect = 4e-13
Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 24/180 (13%)
Query: 11 SKLKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSNALTDIGP---LNKCRQLNTLH 62
L+ L++S N L L S L++ L L L N +G + +L L
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSS----LTFLNLLGNPYKTLGETSLFSHLTKLQILR 155
Query: 63 VAYNA-ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
V T + + + +EEL + + + S +S ++ L LH
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215
Query: 122 LYLS--SSLRVLDLSYNHLERLNLNTLIP---------KQLQYLDVSGNPRLHVDPNHFK 170
+++ SS+ L+L L+ + + L + + ++ V +
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Score = 65.1 bits (159), Expect = 4e-13
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 11 SKLKVLNISKNCLKMLP--SLNNENRYLEKLYLTSNA-LTDIGP--LNKCRQLNTLHVAY 65
S L LN+ N K L SL + L+ L + + T I L L +
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
+ + S + + + L+L L + L L L + LS
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243
Query: 126 S----------SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ + R + ++ L ++ L L+ S N
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287
Score = 62.1 bits (151), Expect = 6e-12
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+ +K L++S N + + + + + L+ L LTSN + I + L L ++YN
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSL-PNTIPQSWPHLRVLRLHSNH-LTSCPTLYL 124
+++L + S + L L GN +L ++ L++LR+ + T
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 125 SS--SLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
+ L L++ + L+ +L + + +L + + +
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220
Score = 51.3 bits (123), Expect = 2e-08
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
C + + ++ S+P ++ ++ L LS N I+ + N+ Q +L+ L L SN
Sbjct: 30 CDRNGICKGSSGSLNSIPSG-LTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86
Query: 115 HLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
+ + + SL LDLSYN+L L+ + P L +L++ GNP
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
Score = 51.3 bits (123), Expect = 3e-08
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 14/136 (10%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRY-LEKLYLTSNALTDI----------GPLNKC 55
L++ + L + +L + + +E L L L L K
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
+ + ++ + ++ S + EL S N + S+P+ I L+ + LH+N
Sbjct: 254 FTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312
Query: 116 LT-SCPTL-YLSSSLR 129
SCP + YLS L
Sbjct: 313 WDCSCPRIDYLSRWLN 328
Score = 50.1 bits (120), Expect = 6e-08
Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 22/145 (15%)
Query: 11 SKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNTLHV 63
+ L+ L I + L+ S+ N + L L + ++ + L +
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQN----VSHLILHMKQHILLLEIFVDVTSSVECLEL 229
Query: 64 AYNAITSLPDNCISA--------WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
+ + + +S + ++ + + + L L N
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFSRNQ 288
Query: 116 LTSCP--TLYLSSSLRVLDLSYNHL 138
L S P +SL+ + L N
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTNPW 313
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 64.6 bits (158), Expect = 6e-13
Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 12/170 (7%)
Query: 4 ELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLH 62
L L + L P +L+ + + + L ++ + + L TL
Sbjct: 74 LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT 133
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSG-NGISSLPNTI--------PQSWPHLRVLRLHS 113
+A N + +LP + I++ + + EL + ++ LP + Q +L+ LRL
Sbjct: 134 LARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 114 NHLTSCP-TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
+ S P ++ +L+ L + + L L +L+ LD+ G L
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242
Score = 58.0 bits (141), Expect = 1e-10
Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 20/169 (11%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSL--NNENRYLEKLYLTSNALTDI-GPLNKCRQLNTLHV 63
NS+ ++ + LK L + L L S L + L + +
Sbjct: 52 QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI 111
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL-HSNHLTSCP-- 120
+ LPD + ++ +E L L+ N + +LP +I LR L + LT P
Sbjct: 112 DAAGLMELPD-TMQQFAGLETLTLARNPLRALPASIAS-LNRLRELSIRACPELTELPEP 169
Query: 121 --------TLYLSSSLRVLDLSYNHLERL--NLNTLIPKQLQYLDVSGN 159
+L+ L L + + L ++ L + L+ L + +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL--QNLKSLKIRNS 216
Score = 58.0 bits (141), Expect = 1e-10
Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 45/192 (23%)
Query: 11 SKLKVLNISKNCLKMLPS----LNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAY 65
S L+ + I L LP LE L L N L + + +L L +
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFAG----LETLTLARNPLRALPASIASLNRLRELSIRA 159
Query: 66 -NAITSLPDN--------CISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
+T LP+ ++ L L GI SLP +I +L+ L++ ++ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN-LQNLKSLKIRNSPL 218
Query: 117 TSCP-TLYLSSSLRVLDLSYN--------------HLERLNLN-----TLIP------KQ 150
++ ++ L LDL L+RL L +P Q
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 151 LQYLDVSGNPRL 162
L+ LD+ G L
Sbjct: 279 LEKLDLRGCVNL 290
Score = 46.1 bits (110), Expect = 1e-06
Identities = 24/139 (17%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAY-NAI 68
L+ L + ++ LP+ + L+ L + ++ L+ +GP ++ +L L + A+
Sbjct: 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 69 TSLPDNCISAWSEMEELVLSG-NGISSLPNTIPQSWPHLRVLRLHSNH-LTSCP-TLYLS 125
+ P + ++ L+L + + +LP I L L L L+ P +
Sbjct: 243 RNYPPI-FGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Query: 126 SSLRVLDLSYNHLERLNLN 144
+ ++ + + +L+ +
Sbjct: 301 PANCIILVPPHLQAQLDQH 319
Score = 42.2 bits (100), Expect = 3e-05
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 11 SKLKVLNISKNCLKMLPS----LNNENRYLEKLYLTS-NALTDIGP-LNKCRQLNTLHVA 64
LK L I + L L L LE+L L AL + P L L +
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPK----LEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 65 -YNAITSLPDNCISAWSEMEELVLSGN-GISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
+ + +LP + I +++E+L L G +S LP+ I Q P ++ + +
Sbjct: 262 DCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQH 319
Query: 123 YLSS 126
+
Sbjct: 320 RPVA 323
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 62.5 bits (152), Expect = 7e-13
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 8/138 (5%)
Query: 3 LELFLQNSSKLK--VLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNT 60
LEL + + ++ VL+ K+ + L E LE L L + L + L K +L
Sbjct: 16 LELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKK 75
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSC 119
L ++ N I D + L LSGN + + P + L+ L L + +T+
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135
Query: 120 PT-----LYLSSSLRVLD 132
L L LD
Sbjct: 136 NDYRESVFKLLPQLTYLD 153
Score = 37.0 bits (86), Expect = 0.001
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 80 SEMEELVLSGNGISSLPN-TIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHL 138
+ + ELVL + + + +L L L + L S L L+ L+LS N +
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI 83
Query: 139 ERL-NLNTLIPKQLQYLDVSGN 159
++ L +L++SGN
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGN 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 63.1 bits (154), Expect = 9e-13
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 37 EKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
+L L +N T + G K QL ++ + N IT + + S + E++L+ N +
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 94 SLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQ 150
++ + + + L+ L L SN +T SS+R+L L N + +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 151 LQYLDVSGNP 160
L L++ NP
Sbjct: 155 LSTLNLLANP 164
Score = 59.3 bits (144), Expect = 2e-11
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 8 QNSSKLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNT 60
+ +L+ +N S N + + + + ++ LTSN L ++ L T
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGAFEGASG----VNEILLTSNRLENVQHKMFKGLESLKT 109
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SC 119
L + N IT + ++ S + L L N I+++ + L L L +N +C
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169
Query: 120 PTLYLSSSLR 129
+L LR
Sbjct: 170 YLAWLGEWLR 179
Score = 39.6 bits (93), Expect = 2e-04
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSLPNT-IPQSWPHLRVLRLHSNHLTSCP--TLYLS 125
+P++ I EL L+ N + L T I + P LR + +N +T +
Sbjct: 24 NKIPEH-IPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80
Query: 126 SSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGN 159
S + + L+ N LE + + L+ L + N
Sbjct: 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 61.9 bits (151), Expect = 2e-12
Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 5/152 (3%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
+ L + ++ + L + + ++ L + + T+ P++ L L + +TS
Sbjct: 44 NSLTYITLANINVTDLTGIEYAHN-IKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH-LTSCPTLYLSSSLR 129
+S + + L +S + T + P + + L N +T L L+
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK 162
Query: 130 VLDLSYNHLERL-NLNTLIPKQLQYLDVSGNP 160
L++ ++ + + +L L
Sbjct: 163 SLNIQFDGVHDYRGIEDF--PKLNQLYAFSQT 192
Score = 51.5 bits (124), Expect = 1e-08
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 4/134 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTD--IGPLNKCRQLNTLHVA 64
++ + +K L I+ ++ LE+L + +T I L+ L L ++
Sbjct: 62 IEYAHNIKDLTINNIHATNYNPISG-LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
++A I+ ++ + LS NG + + ++ P L+ L + + + +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIED 179
Query: 125 SSSLRVLDLSYNHL 138
L L +
Sbjct: 180 FPKLNQLYAFSQTI 193
Score = 46.9 bits (112), Expect = 5e-07
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 29/130 (22%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
L + L + +TD+ + + L + T+ N IS L
Sbjct: 46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY------------------NPISGL 87
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIP-KQLQ 152
N L LR+ +TS LS +SL +LD+S++ + L + ++
Sbjct: 88 SN--------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139
Query: 153 YLDVSGNPRL 162
+D+S N +
Sbjct: 140 SIDLSYNGAI 149
Score = 43.0 bits (102), Expect = 1e-05
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNA-LTDIGPLNKCRQLNTLHVA 64
L + L +L+IS + + + L+ N +TDI PL +L +L++
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSL 95
++ + I + ++ +L I
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
Score = 41.1 bits (97), Expect = 5e-05
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTD--IGPLNKCRQLNTLH 62
+ S L+ L I + N L L ++ +A D + +N ++N++
Sbjct: 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
++YN + + E++ L + +G+ + +P L L S +
Sbjct: 143 LSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI--EDFPKLNQLYAFSQTIGG 195
Score = 29.9 bits (68), Expect = 0.34
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTL 122
+ + DN S + + G SS N L + L + ++T +
Sbjct: 3 AEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGI 62
Query: 123 YLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
+ +++ L ++ H ++ L L+ L + G
Sbjct: 63 EYAHNIKDLTINNIHATNYNPISGL--SNLERLRIMGK 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 63.6 bits (154), Expect = 2e-12
Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 9/164 (5%)
Query: 1 MALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNT 60
+ + L ++ L + L +++ + L + + +
Sbjct: 386 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
LH+A+ +T L + + L LS N + +LP + L VL+ N L +
Sbjct: 446 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENVD 502
Query: 121 TLYLSSSLRVLDLSYNHLERL----NLNTLIPKQLQYLDVSGNP 160
+ L+ L L N L++ L + +L L++ GN
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSC--PRLVLLNLQGNS 544
Score = 59.4 bits (143), Expect = 5e-11
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L+ + L++S N L+ LP R LE L + NAL ++ + +L L + N
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518
Query: 67 AITSLPD-NCISAWSEMEELVLSGNGISSLPN---TIPQSWPHLRVL 109
+ + + + L L GN + + + P + +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 46.3 bits (109), Expect = 1e-06
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 5/155 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNA--LTDIGPLNKCRQLNTLHVA 64
+L +S +L S + L++L + LT I + L
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
++L + + + S + + + + +RVL L LT L
Sbjct: 405 LQYFSTL-KAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKDLTVLCHLEQ 461
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ LDLS+N L L + L+ L S N
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 62.5 bits (152), Expect = 4e-12
Identities = 28/168 (16%), Positives = 67/168 (39%), Gaps = 10/168 (5%)
Query: 13 LKVLNISKNCLKMLPSLN-NENRYLEKLYLTSNALTDI---GPLNKCRQLNTLHVA-YNA 67
L L+++ + LEK+ ++ N + ++ + +L+ + + N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 68 ITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSCPT---LY 123
+ + ++ L++S GI LP+ +L + N ++ + +
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL-HVDPNHFK 170
LS +L L+ N ++ ++ + QL L++S N L + + F
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199
Score = 56.4 bits (136), Expect = 5e-10
Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 6/158 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNA-LTDIGP---LNKCRQLNTL 61
QN L+ L IS +K LP ++ + L + N + I + + L
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
+ N I + ++ + E + N + LPN + +L + + S P+
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
L + ++ S +L++L + L ++
Sbjct: 220 YGLENLKKLRARSTYNLKKLPTLEKLVA-LMEASLTYP 256
Score = 42.9 bits (101), Expect = 2e-05
Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 51 PLNKCR-QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
C + +T +P + + EL + + + L +
Sbjct: 3 HHRICHCSNRVFLCQESKVTEIPSD-LPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKI 59
Query: 110 RLHSN------------HLTSCPTLYLS----------------SSLRVLDLSYNHLERL 141
+ N +L + + +L+ L +S ++ L
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
Query: 142 NLNTLIP-KQLQYLDVSGNPRLH 163
I Q LD+ N +H
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIH 142
Score = 33.3 bits (76), Expect = 0.035
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 107 RVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVD 165
RV + +T P+ L + L L + L+ +++S N L V
Sbjct: 12 RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 166 PNH 168
Sbjct: 71 EAD 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 59.3 bits (144), Expect = 3e-11
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 37 EKLYLTSNALTDIGP--LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
EKL L S L + +L L++ YN + +L +E+ L L+ N ++S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLERL 141
LP + L L L N L S P+ L+ L L+ N L+ +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 55.5 bits (134), Expect = 4e-10
Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 29/169 (17%)
Query: 16 LNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNC 75
L+ ++ + + + + + L L++N + I L+ L L + N I + +N
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENL 88
Query: 76 ISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSY 135
+ +EEL +S N I+SL + +LRVL +S
Sbjct: 89 DAVADTLEELWISYNQIASLSG------------------IEKLV------NLRVLYMSN 124
Query: 136 NHLERLN-LNTLIP-KQLQYLDVSGNP--RLHVDPNHFKSYRSYVRVYI 180
N + ++ L +L+ L ++GNP + + N YR V +
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173
Score = 55.5 bits (134), Expect = 5e-10
Identities = 22/92 (23%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L L++L++ +N +K + +L+ LE+L+++ N + + + K L L+++ N
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125
Query: 67 AITSLPD-NCISAWSEMEELVLSGNGISSLPN 97
IT+ + + ++A ++E+L+L+GN + +
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 55.8 bits (135), Expect = 4e-10
Identities = 28/173 (16%), Positives = 65/173 (37%), Gaps = 19/173 (10%)
Query: 13 LKVLNISKNCLKMLPS-----LNNENRYLEKLYLTSN-ALTDIGP--LNKCRQLNTLHVA 64
+ L + + L+ +PS L N + ++Y++ + L + ++ + +
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPN----ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 65 YN-AITSLPDNCISAWSEMEELVLSGNGISSLPN-TIPQSWPHLRVLRLHSN-HLTSCPT 121
+T + + + ++ L + G+ P+ T S +L + N ++TS P
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 122 ---LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL-HVDPNHFK 170
L + L L N + +L + ++ N L +D + F
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201
Score = 54.2 bits (131), Expect = 2e-09
Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 22/170 (12%)
Query: 8 QNSSKLKVLNISKNC-LKMLPS-----LNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
N SK+ + I L + L L+ L + + L L K +
Sbjct: 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPL----LKFLGIFNTGLKMFPDLTKVYSTDIF 132
Query: 62 HVAY----NAITSLPDNCISA-WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-H 115
+ +TS+P N +E L L NG +S+ L + L+ N +
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKY 191
Query: 116 LTSCPT---LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
LT + S +LD+S + L L + L+ L L
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL--EHLKELIARNTWTL 239
Score = 49.2 bits (118), Expect = 1e-07
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 20/181 (11%)
Query: 7 LQNSSKLKVLNISKNC-LKMLPS-----LNNENRYLEKLYLTSN-ALTDIGP--LNKCRQ 57
N + + +S + L+ L S L+ + + + + LT I P L +
Sbjct: 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSK----VTHIEIRNTRNLTYIDPDALKELPL 106
Query: 58 LNTLHVAYNAITSLPD-NCISAWSEMEELVLSGN-GISSLPNTIPQSWP-HLRVLRLHSN 114
L L + + PD + + L ++ N ++S+P Q L+L++N
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 115 HLTSCPTLYLS-SSLRVLDLSYN-HLERLNLNTL--IPKQLQYLDVSGNPRLHVDPNHFK 170
TS + + L + L+ N +L ++ + + LDVS + +
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226
Query: 171 S 171
Sbjct: 227 H 227
Score = 40.8 bits (96), Expect = 7e-05
Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 6 FLQNSSKLKVLNISKNC-LKMLP--SLNNENRYLEKLYLTSNALTDIGP--LNKCRQLNT 60
+ ++ +L I+ N + +P + L L +N T + N +L+
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDA 183
Query: 61 LHVAYNA-ITSLPDNCIS-AWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
+++ N +T + + +S L +S +++LP+ + HL+ L +
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE---HLKELIARNTW 237
Score = 39.6 bits (93), Expect = 2e-04
Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 34/143 (23%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
C Q V I +P + + L L + ++P+ + P++ + + +
Sbjct: 10 CHQEEDFRVTCKDIQRIPS--LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65
Query: 115 ------------HLTSCPTLYLS----------------SSLRVLDLSYNHLERLNLNTL 146
+L+ + + L+ L + L+ T
Sbjct: 66 VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Query: 147 IP--KQLQYLDVSGNPRLHVDPN 167
+ L+++ NP + P
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPV 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 55.9 bits (134), Expect = 7e-10
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGN-GISSLPNTIPQSWPHLRVLRLHS 113
+ L + + + + EL + + L + LR L +
Sbjct: 7 PHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 114 NHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
+ L + + L L+LS+N LE L+ T+ LQ L +SGNP
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114
Score = 48.2 bits (114), Expect = 3e-07
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 23 LKMLPSLNNENRYLEKLYLTSN-ALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAW 79
L LP N L +LY+ + L + L +L L + + + + +
Sbjct: 24 LHHLPGAEN----LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79
Query: 80 SEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTLYLSSSLR 129
+ L LS N + SL Q L+ L L N L SC +L
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE 129
Score = 41.6 bits (97), Expect = 5e-05
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN-HLTSCPTLYLS--SSL 128
PD C S L + +G + +P + +L L + + HL L L
Sbjct: 2 PDACCPHGSS--GLRCTRDGALDSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGEL 58
Query: 129 RVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHVDPNHFKS 171
R L + + L + + +L L++S N + +
Sbjct: 59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 54.7 bits (132), Expect = 2e-09
Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 45/203 (22%)
Query: 1 MALELFLQNSSKLKVLNISKNCL---------KMLPSLNN-----ENRYLEKLYLTSNAL 46
L FL + L+ L + N L + L L L + N L
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
Query: 47 TDIG------PLNKCRQLNTLHVAYNAITS-----LPDNCISAWSEMEELVLSGNGI--- 92
+ R L+T+ + N I L ++ E++ L L N
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231
Query: 93 --SSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--------SLRVLDLSYNHLERLN 142
S+L + SWP+LR L L+ L++ + L+ L L YN +E
Sbjct: 232 GSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290
Query: 143 LNTLI------PKQLQYLDVSGN 159
+ TL L +L+++GN
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGN 313
Score = 48.2 bits (115), Expect = 3e-07
Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 56/209 (26%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNE-----------NRYLEKLYLTSNALTDIG 50
L + + L++ S + E L + L+ NA
Sbjct: 51 WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110
Query: 51 P------LNKCRQLNTLHVAYNAIT---------SLPDNCISAWSE----MEELVLSGN- 90
L+K L L++ N + +L + ++ ++ + ++ N
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
Query: 91 ----GISSLPNTIPQSWPHLRVLRLHSNHLTS-------CPTLYLSSSLRVLDLSYNHL- 138
+ T L +++ N + L L+VLDL N
Sbjct: 171 LENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229
Query: 139 --------ERLNLNTLIPKQLQYLDVSGN 159
L L+ L ++
Sbjct: 230 HLGSSALAIALKSWP----NLRELGLNDC 254
Score = 45.5 bits (108), Expect = 3e-06
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 43/168 (25%)
Query: 7 LQNSSKLKVLNISKNCL---------KMLPSLNNENRYLEKLYLTSNALTDIG------- 50
+N+ L+ + +N L K S +R L + + N + G
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQS----HRLLHTVKMVQNGIRPEGIEHLLLE 210
Query: 51 PLNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGNGISS-----LPNT 98
L C++L L + N T SA + EL L+ +S+ + +
Sbjct: 211 GLAYCQELKVLDLQDNTFT---HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267
Query: 99 IPQSW-PHLRVLRLHSNHLTSCPTLYLS-------SSLRVLDLSYNHL 138
+ L+ LRL N + L L L+L+ N
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 43.2 bits (102), Expect = 1e-05
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 29/137 (21%)
Query: 7 LQNSSKLKVLNISKNCL------KMLPSLNNENRYLEKLYLTSNALTDIG------PLNK 54
Q+ L + + +N + +L + L+ L L N T +G L
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEM---------EELVLSGNGIS-----SLPNTIP 100
L L + ++ +A + + L L N I +L I
Sbjct: 243 WPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299
Query: 101 QSWPHLRVLRLHSNHLT 117
+ P L L L+ N +
Sbjct: 300 EKMPDLLFLELNGNRFS 316
Score = 26.6 bits (59), Expect = 5.0
Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 41/149 (27%)
Query: 33 NRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92
+E L +A+T + + L ++ ++E+VLSGN I
Sbjct: 3 RFSIEGKSLKLDAITTED----EKSV---------FAVLLED-----DSVKEIVLSGNTI 44
Query: 93 S-----SLPNTIPQSWPHLRVLRLHSNHLTS------------CPTLYLSSSLRVLDLSY 135
L I S L + L L + LS
Sbjct: 45 GTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103
Query: 136 NHLERLNLNTL-----IPKQLQYLDVSGN 159
N L L++L + N
Sbjct: 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 52.7 bits (127), Expect = 4e-09
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 37 EKLYLTSNALTDI-GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSL 95
+LYL N T + L+ + L + ++ N I++L + S +++ L+LS N + +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCP 120
P LR+L LH N ++ P
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVP 118
Score = 36.9 bits (86), Expect = 0.001
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 22/120 (18%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L N L ++++S N + L + + QL TL ++YN
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSN---------------------QSFSNMTQLLTLILSYN 88
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTLYLS 125
+ +P + L L GN IS +P L L + +N L C +LS
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148
Score = 35.7 bits (83), Expect = 0.004
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS-SSLRVLDLSYNHLERL----- 141
S G+ LP IP+ + L L N T P + L ++DLS N + L
Sbjct: 18 SNKGLKVLPKGIPRD---VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 142 -NLNTLIPKQLQYLDVSGN 159
N+ QL L +S N
Sbjct: 75 SNM-----TQLLTLILSYN 88
Score = 35.3 bits (82), Expect = 0.004
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHLER 140
EL L GN + +P + ++ HL ++ L +N +++ S+ L L LSYN L
Sbjct: 34 TELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-- 90
Query: 141 LNLNTLIPK-------QLQYLDVSGN 159
IP L+ L + GN
Sbjct: 91 ----RCIPPRTFDGLKSLRLLSLHGN 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 51.9 bits (125), Expect = 7e-09
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 37 EKLYLTSNALTDI---GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
+L L N L I G + L L + N +T + N S ++EL L N I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 94 SLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ N + L+ L L+ N ++
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVM 118
Score = 34.6 bits (80), Expect = 0.007
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 22/90 (24%)
Query: 83 EELVLSGNGISSLPNT-IPQSWPHLRVLRLHSNHLTSCPT-----LYLSSSLRVLDLSYN 136
EL+L+ N + + + + PHL L L N LT S ++ L L N
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---SHIQELQLGEN 88
Query: 137 HLERLNLNTLIPK-------QLQYLDVSGN 159
++ + QL+ L++ N
Sbjct: 89 KIKEI------SNKMFLGLHQLKTLNLYDN 112
Score = 33.8 bits (78), Expect = 0.016
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 12 KLKVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVA 64
L L + +N L + ++ +++L L N + +I QL TL++
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASH----IQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 65 YNAITSLPD 73
N I+ +
Sbjct: 111 DNQISCVMP 119
Score = 30.4 bits (69), Expect = 0.25
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSS---LRVLDLSYNHLERL--- 141
+G G+ +P IP L L+ N L + L L L+L N L +
Sbjct: 16 TGRGLKEIPRDIPLH---TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 142 ---NLNTLIPKQLQYLDVSGN 159
+Q L + N
Sbjct: 73 AFEGA-----SHIQELQLGEN 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 52.7 bits (127), Expect = 1e-08
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 39/192 (20%)
Query: 4 ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG-------P 51
+ S K++ L++ CL +L S L++L+L+ N L D G
Sbjct: 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137
Query: 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGN-----GISSLPNTI 99
L+ +L L + Y +++ + + +EL +S N G+ L +
Sbjct: 138 LDPQCRLEKLQLEYCSLS---AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194
Query: 100 PQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHLERLNLNTLIP----- 148
S L L+L S +TS C + +SLR L L N L + + L P
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254
Query: 149 -KQLQYLDVSGN 159
+L+ L +
Sbjct: 255 SSRLRTLWIWEC 266
Score = 50.7 bits (122), Expect = 5e-08
Identities = 46/166 (27%), Positives = 63/166 (37%), Gaps = 33/166 (19%)
Query: 4 ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG-------P 51
L SS+L+ L I + + L + L++L L N L D G
Sbjct: 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308
Query: 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGN-----GISSLPNTI 99
L QL +L V + T C S +S + EL +S N G+ L +
Sbjct: 309 LEPGCQLESLWVKSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365
Query: 100 PQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHLE 139
Q LRVL L ++ TL + SLR LDLS N L
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
Score = 49.6 bits (119), Expect = 1e-07
Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 39/192 (20%)
Query: 4 ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG-------- 50
E L +L+ L + L + L S+ ++L +++N + + G
Sbjct: 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194
Query: 51 PLNKCRQLNTLHVAYNAITSLPDNC------ISAWSEMEELVLSGN-----GISSLPNTI 99
+ C+ L L + +T DNC +++ + + EL L N G++ L +
Sbjct: 195 KDSPCQ-LEALKLESCGVT--SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251
Query: 100 PQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHLERLNLNTLIP----- 148
LR L + +T+ C L SL+ L L+ N L L
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311
Query: 149 -KQLQYLDVSGN 159
QL+ L V
Sbjct: 312 GCQLESLWVKSC 323
Score = 48.4 bits (116), Expect = 3e-07
Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 43/182 (23%)
Query: 2 ALELFLQNSSKLKVLNISKNCLK------MLPSLNNENRYLEKLYLTSNALTDIG----- 50
L + + + L+ L + N L + P L + + L L++ +T G
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277
Query: 51 -PLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
L L L +A N + G L T+ + L L
Sbjct: 278 RVLRAKESLKELSLAGNEL-------------------GDEGARLLCETLLEPGCQLESL 318
Query: 110 RLHSNHLTS------CPTLYLSSSLRVLDLSYNHLERLNLNTL------IPKQLQYLDVS 157
+ S T+ L + L L +S N LE + L L+ L ++
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378
Query: 158 GN 159
Sbjct: 379 DC 380
Score = 44.2 bits (105), Expect = 7e-06
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 39/170 (22%)
Query: 10 SSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIGP------LNKCRQLNTL 61
S ++ L+I L L + + + L LT+ L L L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS--- 118
++ N + G+ + + ++ L L + LT
Sbjct: 62 NLRSNEL-------------------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102
Query: 119 ---CPTLYLSSSLRVLDLSYNHLERLNLNTLIPK------QLQYLDVSGN 159
TL +L+ L LS N L L L +L+ L +
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152
Score = 43.4 bits (103), Expect = 1e-05
Identities = 36/197 (18%), Positives = 60/197 (30%), Gaps = 45/197 (22%)
Query: 2 ALELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIGP----- 51
L + +V+ + L K + S N L +L L SN L D+G
Sbjct: 19 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78
Query: 52 --LNKCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGN-----GISSLPN 97
++ L + +T S +EL LS N G+ L
Sbjct: 79 GLQTPSCKIQKLSLQNCCLT---GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135
Query: 98 TIPQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHL---------ERLN 142
+ L L+L L++ L + L +S N + + L
Sbjct: 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195
Query: 143 LNTLIPKQLQYLDVSGN 159
+ QL+ L +
Sbjct: 196 DSPC---QLEALKLESC 209
Score = 26.8 bits (60), Expect = 4.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 7 LQNSSKLKVLNISKNCL-----KML-PSLNNENRYLEKLYLTSNALTDIG 50
L + L+ L++S NCL L S+ LE+L L ++
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443
Score = 26.1 bits (58), Expect = 7.6
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
+S ++ LD+ L L+P +Q Q + +
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC 38
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 50.9 bits (122), Expect = 4e-08
Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 42/197 (21%)
Query: 2 ALELFLQNSSKLKVLNISKNCL------KMLPSLNNENRYLEKLYLTSNALTDIGP---- 51
+E F + L++S N L +++ + N + L L+ N+L
Sbjct: 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72
Query: 52 ---LNKCRQLNTLHVAYNAITSLPDNCISAWSEM--------EELVLSGNGISS-----L 95
+ +L+++ N ++ + L L N SS
Sbjct: 73 QILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129
Query: 96 PNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS-------SLRVLDLSYNHLERLNLNTL-- 146
+ L L N L + L ++ L+L N+L N L
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189
Query: 147 ----IPKQLQYLDVSGN 159
IP + LD+S N
Sbjct: 190 FLASIPASVTSLDLSAN 206
Score = 49.3 bits (118), Expect = 1e-07
Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 42/196 (21%)
Query: 4 ELFLQNSSKLKVLNISKNCL------KMLPSLNNENRYLEKLYLTSNALTDIGP------ 51
+ F + + LN+S N L +++ L + L L+ N L+
Sbjct: 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103
Query: 52 -LNKCRQLNTLHVAYNAITSLPDNCISAWSEM--------EELVLSGNGIS-----SLPN 97
+ L + +N + S + + L L GN + L
Sbjct: 104 LAAIPFTITVLDLGWNDFS---SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160
Query: 98 TIPQSWPHLRVLRLHSNHLTSCPTLYLSS-------SLRVLDLSYNHLERLNLNTL---- 146
+ ++ L L N+L S L+ S+ LDLS N L + L
Sbjct: 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220
Query: 147 --IPKQLQYLDVSGNP 160
IP + L++ N
Sbjct: 221 SSIPNHVVSLNLCLNC 236
Score = 40.1 bits (94), Expect = 2e-04
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 38/176 (21%)
Query: 18 ISKNCLKMLPSLNNENRYLEKLYLTSNALTDIG--------PLNKCRQLNTLHVAYNAIT 69
+ + + L L+ N L I + +L+++ N++
Sbjct: 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLG 64
Query: 70 SLPDNCISAWSEM--------EELVLSGNGIS-----SLPNTIPQSWPHLRVLRLHSNHL 116
++ L LSGN +S L T+ + VL L N
Sbjct: 65 ---FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121
Query: 117 TSCPTLYLSS-------SLRVLDLSYNHLERLNLNTL------IPKQLQYLDVSGN 159
+S + S+ L+L N L + + L IP + L++ GN
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177
Score = 39.3 bits (92), Expect = 3e-04
Identities = 21/157 (13%), Positives = 46/157 (29%), Gaps = 40/157 (25%)
Query: 4 ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIGP------- 51
+F + + LN+ NCL + L L + ++L+ +YL + + ++
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277
Query: 52 --LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVL 109
+++ + I + + N I + V
Sbjct: 278 AAFPNIQKIILVDKNGKEIHP-------------------SHSIPISNLIRELSGKADVP 318
Query: 110 RLHSNHLT-------SCPTLYLSSSLRVLDLSYNHLE 139
L + L + L + LR + L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355
Score = 39.3 bits (92), Expect = 3e-04
Identities = 20/170 (11%), Positives = 47/170 (27%), Gaps = 39/170 (22%)
Query: 4 ELFLQNSSKLKVLNISKNCLK------MLPSLNNENRYLEKLYLTSNALTDIGPL----- 52
+ F + + LN+ N L ++ L + L L N L
Sbjct: 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190
Query: 53 --NKCRQLNTLHVAYNAITSLPDNCISAWSEM--------EELVLSGNGISS-----LPN 97
+ + +L ++ N + + + + L L N + L
Sbjct: 191 LASIPASVTSLDLSANLLG---LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 98 TIPQSWPHLRVLRLHSNHLTS---------CPTLYLSSSLRVLDLSYNHL 138
HL+ + L + + + + ++D + +
Sbjct: 248 LKDSL-KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Score = 38.9 bits (91), Expect = 5e-04
Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 42/190 (22%)
Query: 4 ELFLQNSSKLKVLNISKN------CLKMLPSLNNENRYLEKLYLTSNALTDIG------P 51
+ + + L++S N ++ ++ ++ L L N L
Sbjct: 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248
Query: 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL 111
+ + L T+++ Y+ + ++ A + PN + ++
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGA------------AFPNI-----QKIILVDK 291
Query: 112 HSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL-------------IPKQLQYLDVSG 158
+ + ++ +S+ +R L + LN + IP +L+ +
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351
Query: 159 NPRLHVDPNH 168
P L +H
Sbjct: 352 KPLLEHHHHH 361
Score = 29.3 bits (66), Expect = 0.59
Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 20/123 (16%)
Query: 2 ALELFLQNSSKLKVLNISKN--------CLKMLPSLNNENRYLEKLYLTSNALTDIGPLN 53
L+L + L+ + + + K L + + + + + +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303
Query: 54 KCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHS 113
+ L + SL + C+ + + + ++P+ LR
Sbjct: 304 ISNLIRELSGKADVP-SLLNQCLIFAQKHQTNIED----LNIPD-------ELRESIQTC 351
Query: 114 NHL 116
L
Sbjct: 352 KPL 354
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 47.4 bits (113), Expect = 5e-07
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
L++ N IT L + ++EL L N + +LP + S L VL L +N LT P
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 121 TLYLSS--SLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ L+ L + N L L L +L + N
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145
Score = 40.1 bits (94), Expect = 1e-04
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 14 KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS 70
++L + N + L ++ L++LYL SN L + G + QL L + N +T
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
LP ++EL + N ++ LP I + HL L L N L S P
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIP 151
Score = 35.8 bits (83), Expect = 0.004
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
T+ S+P I + L L N I+ L + S +L+ L L SN L +
Sbjct: 22 TTVDCRSKRHASVPAG-IPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78
Query: 119 CPT--LYLSSSLRVLDLSYNHLERLNLNTLIPK-------QLQYLDVSGN 159
P + L VLDL N L L P L+ L + N
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVL------PSAVFDRLVHLKELFMCCN 122
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 47.5 bits (114), Expect = 5e-07
Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 45/188 (23%)
Query: 9 NSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIGP----LNKCRQLNTLH 62
++L L I+ + + L+ L L + NAL+ G ++ L +
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALS--GTLPPSISSLPNLVGIT 155
Query: 63 VAYNAIT-SLPDNCISAWSEMEELVLSGNGIS-SLPNT-------------------IPQ 101
N I+ ++PD+ S + +S N ++ +P T
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215
Query: 102 SW---PHLRVLRLHSNHLT-SCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQ------L 151
+ + + + L N L + LS +L LDL N + +P+ L
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-----RIYGTLPQGLTQLKFL 270
Query: 152 QYLDVSGN 159
L+VS N
Sbjct: 271 HSLNVSFN 278
Score = 42.9 bits (102), Expect = 2e-05
Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 20/168 (11%)
Query: 7 LQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALT-----DIGPLNKCRQLN 59
+ + L + N + + S + ++ + ++ N LT LN L
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----LA 200
Query: 60 TLHVAYNAIT-SLPDNCISAWSEMEELVLSGNGISSLPNTIPQ--SWPHLRVLRLHSNHL 116
+ ++ N + + +++ L+ N ++ + + +L L L +N +
Sbjct: 201 FVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAF---DLGKVGLSKNLNGLDLRNNRI 256
Query: 117 TSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRL 162
L L L++S+N+L ++ + N L
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Score = 34.4 bits (80), Expect = 0.011
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 84 ELVLSGNGISSLPNTIPQS---WPHLRVLRLHS-NHLTSC--PTLYLSSSLRVLDLSYNH 137
L LSG + P IP S P+L L + N+L P + + L L +++
Sbjct: 54 NLDLSGLNLP-KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT- 111
Query: 138 LERLNLNTLIP------KQLQYLDVSGN 159
N++ IP K L LD S N
Sbjct: 112 ----NVSGAIPDFLSQIKTLVTLDFSYN 135
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 46.6 bits (111), Expect = 7e-07
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 61 LHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
L + N++ SLP+ + + +L L GN + SLPN + L L L +N L S P
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 121 TLYLSS--SLRVLDLSYNHLERLNLNTLIPK-------QLQYLDVSGN 159
L+ L L+ N L+ L P QL+ L + N
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSL------PDGVFDKLTQLKDLRLYQN 134
Score = 43.5 bits (103), Expect = 7e-06
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 14 KVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITS 70
L++ N LK LP+ + L +LYL N L + G NK L L+++ N + S
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
LP+ ++++EL L+ N + SLP+ + L+ LRL+ N L S P
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 36.6 bits (85), Expect = 0.002
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
T+ TS+P I A + L L N + SLPN + L L L N L S
Sbjct: 10 TTVECYSQGRTSVPTG-IPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66
Query: 119 CPTLYLSS--SLRVLDLSYNHLERLNLNTLIPK-------QLQYLDVSGN 159
P + SL L+LS N L+ L P QL+ L ++ N
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSL------PNGVFDKLTQLKELALNTN 110
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 44.2 bits (105), Expect = 3e-06
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 37 EKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
+L L SN L + G +K QL L ++ N I SLPD +++ L L N + S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCP 120
LPN + L+ L L +N L S P
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVP 116
Score = 37.2 bits (87), Expect = 8e-04
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14 KVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN 66
L + N L+ LP L L KL L+ N + + G +K +L L++ N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQ----LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPT-LYL 124
+ SLP+ ++++EL L N + S+P+ I L+ + LH+N SCP YL
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146
Query: 125 S 125
S
Sbjct: 147 S 147
Score = 34.2 bits (79), Expect = 0.013
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
+ +TS+P I + L L N + SLP+ + L L L N + S
Sbjct: 10 TEIRCNSKGLTSVPTG-IPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS 66
Query: 119 CPTLYLSS--SLRVLDLSYNHLERL------NLNTLIPKQLQYLDVSGN 159
P L +L L N L+ L L QL+ L + N
Sbjct: 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL-----TQLKELALDTN 110
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 43.2 bits (102), Expect = 2e-05
Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 43/168 (25%)
Query: 4 ELFLQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIG--------PLN 53
+ L +N++ L L +L KL L N+L +
Sbjct: 94 AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153
Query: 54 KCRQLNTLHVAYNAITSLPDNCISAWSEM-------EELVLSGNGISS----------LP 96
+C Q+ TL ++ N +T ++ E L L G+
Sbjct: 154 QC-QITTLRLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209
Query: 97 NTIPQSWPHLRVLRLHSNHLTSCPTLYLSS------SLRVLDLSYNHL 138
N L+ L + N L L+ SL +L L +N L
Sbjct: 210 NR------QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251
Score = 34.3 bits (79), Expect = 0.015
Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 31/155 (20%)
Query: 4 ELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG------PL 52
+L L + ++ L +S N L +L N + L L L D G L
Sbjct: 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207
Query: 53 NKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH 112
++ RQL L+VAYN D A + + P L +L L+
Sbjct: 208 DRNRQLQELNVAYNGAG---DTAALALARA----AREH-------------PSLELLHLY 247
Query: 113 SNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLI 147
N L+S L + + L T +
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282
Score = 34.3 bits (79), Expect = 0.015
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 23/149 (15%)
Query: 7 LQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYLTSNALTDIG------PLNKC 55
L + +L+ LN++ N L E+ LE L+L N L+ G
Sbjct: 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266
Query: 56 RQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
+ V+ T++ + SE++ ++S Q L + L +
Sbjct: 267 EGGARVVVSLTEGTAVSEYWSVILSEVQR------NLNSWDRARVQRHLELLLRDLEDSR 320
Query: 116 LTS------CPTLYLSSSLRVLDLSYNHL 138
+ L + +R L
Sbjct: 321 GATLNPWRKAQLLRVEGEVRALLEQLGSS 349
Score = 27.4 bits (61), Expect = 2.9
Identities = 17/156 (10%), Positives = 38/156 (24%), Gaps = 32/156 (20%)
Query: 1 MALELFLQNSSKLKVLNISKNC--------LKMLPSLNNENRYLEKLYLTSNALTDIGPL 52
+AL + L++L++ N L+ L + A+++ +
Sbjct: 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288
Query: 53 NKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP----------NTIPQS 102
L S + E+ L + ++L
Sbjct: 289 ILSEVQRNL-------NSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE--- 338
Query: 103 WPHLRVLRLHSNHLTSCPTLYLSSSLRV-LDLSYNH 137
+R L S + ++H
Sbjct: 339 ---VRALLEQLGSSGSPSGSWSHPQFEKGAGHHHHH 371
Score = 27.0 bits (60), Expect = 3.4
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 20/95 (21%)
Query: 82 MEELVLSGNGISS-----LPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS---SLRVLDL 133
+ +L L+G ++ + + L + L S L L R L L
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133
Query: 134 SYNHL---------ERLNLNTLIPKQLQYLDVSGN 159
N L + L + Q+ L +S N
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQ---CQITTLRLSNN 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 4e-05
Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 75/213 (35%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL---NKCRQL 58
L L K L+ + LP E L L+ I
Sbjct: 303 VKSLLL------KYLDCR---PQDLPR--------EVLTTNPRRLSIIAESIRDGLATWD 345
Query: 59 NTLHVAYNAITSLPDNCISA------------------------------WSEME----E 84
N HV + +T++ ++ ++ W ++
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 85 LVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSL--RVLDLSYNHLERLN 142
+V++ SL P + + S +L L +L ++D YN + +
Sbjct: 406 VVVNKLHKYSLVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFD 460
Query: 143 LNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSY 175
+ LIP YLD +F S+ +
Sbjct: 461 SDDLIP---PYLD-----------QYFYSHIGH 479
Score = 36.4 bits (83), Expect = 0.004
Identities = 35/227 (15%), Positives = 64/227 (28%), Gaps = 77/227 (33%)
Query: 14 KVLNISKNCLKMLPSLNNENRYLE--------KLYLTSNALTDIGP------------LN 53
L + + L L + + K ++ + L
Sbjct: 136 PYLKL-RQALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 54 KCR-------QLNTL-HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPH 105
C L L + TS D+ + L + I + + +S P+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELRRLLKSKPY 243
Query: 106 ---LRVLR--LHSNHLT----SCPTLYLSSSLRVLD-LSYNHLERLNLN----TLIPKQ- 150
L VL ++ SC L + +V D LS ++L+ TL P +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 151 ----LQYLDVS----------GNP--------RLHVDPNHFKSYRSY 175
L+YLD NP + + +++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 40.0 bits (93), Expect = 2e-04
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 28/128 (21%)
Query: 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN--TIPQSWPHLRVL 109
N LN + + +N E+ L LS N + L + +I Q P+L++L
Sbjct: 146 QNIDVVLNRRSCMAATLRIIEENI----PELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201
Query: 110 RLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
L N L S L+++ +L+ L + GN +
Sbjct: 202 NLSGNELK----------------SERELDKIKG-----LKLEELWLDGNSLCDTFRDQ- 239
Query: 170 KSYRSYVR 177
+Y S +R
Sbjct: 240 STYISAIR 247
Score = 33.0 bits (75), Expect = 0.032
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 16 LNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL----NKCRQLNTLHVAYNAITSL 71
LN L + L L L++N L + + K L L+++ N + S
Sbjct: 152 LNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211
Query: 72 PDNCISAWSEMEELVLSGNGISSLP-------NTIPQSWPHLRVL 109
+ ++EEL L GN + + I + +P L L
Sbjct: 212 RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256
Score = 26.5 bits (58), Expect = 5.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 3 LELFLQNSSKLKVLNISKNCLKMLPSLNN-ENRYLEKLYLTSNALTD 48
+ +Q + LK+LN+S N LK L+ + LE+L+L N+L D
Sbjct: 188 MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 35.7 bits (83), Expect = 0.003
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
T+ + ++ S+P I + L L N I+ L + L L L +N LT
Sbjct: 12 TTVDCSGKSLASVPTG-IPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 119 CPT-----LYLSSSLRVLDLSYNHLERL------NLNTLIPKQLQYLDVSGNP 160
P L + L L L+ N L+ + NL K L ++ + NP
Sbjct: 69 LPAGVFDKL---TQLTQLSLNDNQLKSIPRGAFDNL-----KSLTHIWLLNNP 113
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 36.1 bits (82), Expect = 0.004
Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 24/155 (15%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN----KCRQLNTL 61
L L L I + N L+ L + S L D + L L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKPRPN--LKSLEIISGGLPDSVVEDILGSDLPNLEKL 224
Query: 62 HVAYNAITSLPDNCISAWSE---------MEELVLSGNGISS-LPNTIPQS--WPHLRVL 109
+ D ++ + ++ L + + + +S P L +
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284
Query: 110 RLHSNHLTS------CPTLYLSSSLRVLDLSYNHL 138
+ + LT + L+ +++ YN+L
Sbjct: 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 32.2 bits (72), Expect = 0.066
Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 24/157 (15%)
Query: 1 MALELFLQNSSKLKVLNISKN----------CLKMLPSLNNENRYL-EKLYLTSNALTDI 49
L + + LK L I LP+L Y+ + Y +
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242
Query: 50 GPL---NKCRQLNTLHVAYNAITSLPDNCISA---WSEMEELVLSGNGIS-----SLPNT 98
PL ++ L L + ++ ++E + +S ++ L +
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302
Query: 99 IPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV-LDLS 134
+ + HL+ + + N+L+ L SL + +D+S
Sbjct: 303 VDKI-KHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 34.9 bits (81), Expect = 0.005
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS 118
++ + S+P I + + L L+ N I+ L + +L+ L +SN LT+
Sbjct: 15 TLVNCQNIRLASVPAG-IPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 119 CPT-----LYLSSSLRVLDLSYNHLERL------NLNTLIPKQLQYLDVSGNP 160
PT L + L LDL+ NHL+ + NL K L ++ + NP
Sbjct: 72 IPTGVFDKL---TQLTQLDLNDNHLKSIPRGAFDNL-----KSLTHIYLYNNP 116
Score = 27.6 bits (62), Expect = 1.7
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 14 KVLNISKNCLKMLP-----SLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYN 66
+ L ++ N + L L N L++LY SN LT I G +K QL L + N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVN----LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Query: 67 AITSLPD 73
+ S+P
Sbjct: 92 HLKSIPR 98
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 32.1 bits (73), Expect = 0.041
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTLYLS 125
ELVL+GN +++LP + + P LR L +N C + L
Sbjct: 34 TELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLR 77
Score = 27.8 bits (62), Expect = 1.1
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS--SLRVLDLSYNHL 138
G +SLP P L L N+LT+ P L + +LR L N
Sbjct: 19 GLTWASLPTAFPVD---TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 27.5 bits (61), Expect = 1.5
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 124 LSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNP 160
L L+ N+L L L L+ + NP
Sbjct: 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.090
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 58/146 (39%)
Query: 76 ISAWSEMEELVLSGNGISSLPNTIP---QSWPHLRVLR------LHS--------NHLTS 118
+ A+S L LS +G SL + + S+ L+ L + T+
Sbjct: 1 MDAYS-TRPLTLS-HG--SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 119 CPTL------YLSSSL---------RVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
L Y+SS + +VL+L E YL GN +H
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-----------CYL--EGND-IH 102
Query: 164 V--------DPNHFKSYRSYVRVYIQ 181
+ + ++ YI
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYIT 128
Score = 26.6 bits (58), Expect = 5.9
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 29/118 (24%)
Query: 78 AWSEMEELVLSGNGISSLPNTIPQSWP-----HLRVLR--LHSNHLTSCPTLYLSSS--L 128
+E E L GN I +L + Q +++ + + + P S+S
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 129 RVLDLSYNHLERL-----NLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRVYIQ 181
R + L + N + ++L+ L +++Y V I+
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYF-EELRDL--------------YQTYHVLVGDLIK 189
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 31.0 bits (70), Expect = 0.17
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 2 ALELFLQNSSKLKVLN------ISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL--- 52
+ ++ + LK +N +SK ++ L ++++EK L + A++D
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 53 -----NKCRQLNTLHVAYNAITS 70
+ L L+V N +T
Sbjct: 92 ELIETSPS--LRVLNVESNFLTP 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 31.0 bits (70), Expect = 0.20
Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 34/176 (19%)
Query: 12 KLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIG--PLNKCRQLNTLHVAY-- 65
+++ +++S + + L + ++ L+ L L L+D L K L L+++
Sbjct: 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153
Query: 66 ----NAITSLPDNCISAWSEMEELVLSG-NGIS--SLPNTIPQSWPHLRVLRLHSNHLTS 118
A+ +L +C S ++EL LS + + + + L L +
Sbjct: 154 GFSEFALQTLLSSC----SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL-----SG 204
Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLN--TLI----------PKQLQYLDVSGNPRL 162
S L L +L L+L+ ++ LQ+L +S +
Sbjct: 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260
Score = 30.6 bits (69), Expect = 0.24
Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 13/164 (7%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAIT 69
+ + + + + ++ L + + L I L++C +L L + ++
Sbjct: 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLRLS 131
Query: 70 SLPDNCISAWSEMEELVLSG-NGISSLP-NTIPQSWPHLRVLRLHSNHLTSCPTLY---- 123
N ++ S + L LSG +G S T+ S L L L + +
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191
Query: 124 -LSSSLRVLDLS--YNHLERLNLNTLIP--KQLQYLDVSGNPRL 162
+S ++ L+LS +L++ +L+TL+ L +LD+S + L
Sbjct: 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 30.7 bits (69), Expect = 0.27
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 40/180 (22%)
Query: 2 ALELFLQNSSKLKVLNISKNCLKM----LPSLNNENRYLEKLYLTSNALTDIGP---LNK 54
+ L KL+ + L + + + + L +D G
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
C L L + + + I+A P LR L +
Sbjct: 487 CPNLQKLEMRGCCFS---ERAIAA--------------------AVTKLPSLRYLWVQGY 523
Query: 115 HLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
+ + + N+ + +++ ++ G R P H +Y S
Sbjct: 524 RASMTGQDLMQMARP----------YWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYS 573
Score = 30.7 bits (69), Expect = 0.30
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 22/157 (14%)
Query: 5 LFLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTD---IGPLNKCRQLNTL 61
+ L KL L +S +P L + KL L L + KC L L
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323
Query: 62 HVAY----NAITSLPDNC-------ISAWSEMEELVLSGNGISSLP-NTIPQSWPHLRVL 109
+ L C I ++ + + +S + Q L +
Sbjct: 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383
Query: 110 RLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL 146
++ + +T + SL + +L L L
Sbjct: 384 AVYVSDIT-------NESLESIGTYLKNLCDFRLVLL 413
Score = 28.0 bits (62), Expect = 2.0
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 53 NKCRQLNTLHVAYNAIT--SLPDNCISAWSEMEELVLSG-NGISSL-PNTIPQSWPHLRV 108
N RQL ++H ++ L + ++E L L +G ++ +I ++
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168
Query: 109 LRLHSNHLTSCPTLYLS------SSLRVLDLSYNHLERLNLNTLIP-----KQLQYLDVS 157
L + + + +L +SL VL+ +++ L + L + V
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228
Query: 158 GNPRL 162
L
Sbjct: 229 DFEIL 233
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 30.0 bits (68), Expect = 0.30
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 2 ALELFLQNSSKLKVLNISKNC------LKMLPSLNNENRYLEKLYLTSNALTDIGP---- 51
L+ N L+ +N++ LK N Y++K + D
Sbjct: 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 86
Query: 52 --LNKCRQLNTLHVAYNAIT 69
L L +L+V N I+
Sbjct: 87 EMLKVNNTLKSLNVESNFIS 106
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional
regulator LYSR struc genomics, PSI-2, protein structure
initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Length = 238
Score = 29.9 bits (68), Expect = 0.41
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 55 CRQLN-TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH 112
C + V A ++ S + EL+ + + LP I L+ + L
Sbjct: 147 CEKAGLHPQVVIEA---------NSISAVLELIRRTSLSTLLPAAIATQHDGLKAISLA 196
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 29.4 bits (66), Expect = 0.45
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 19/149 (12%)
Query: 2 ALELFLQNSSKLKVLNISKNC--LKMLPSLNNENRYLEKLYLTSNALTDIG--PLNKCRQ 57
A E L+ + ++ + LP+ + ++ + T + + IG + +
Sbjct: 27 ASEWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQY 86
Query: 58 LNTLHVAYNA-ITSLPDNCISAWSEMEELVLSGNG--ISSLPNTIPQSWPHLRVLR-LHS 113
+ + + I D C+ S++E L S I S N + L R L
Sbjct: 87 VEKIRLCKCHYIE---DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143
Query: 114 NHLTSCP--------TLYLSSSLRVLDLS 134
L+ P +SL L+L
Sbjct: 144 LFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 29.9 bits (67), Expect = 0.48
Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 23/158 (14%)
Query: 3 LELFLQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTS-NALTDIG---PLNKCR 56
+E + + L+ + + + + L + + + L L+S + G CR
Sbjct: 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156
Query: 57 QLNTLHVAYNAITSLPDNCISA----WSEMEELVLSGNGI----SSLPNTIPQSWPHLRV 108
L L + + + + + +S ++ + L +S S+L + P+L+
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL-ERLVTRCPNLKS 215
Query: 109 LRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL 146
L+L+ L L L LE L
Sbjct: 216 LKLN-----RAVPL---EKLATLLQRAPQLEELGTGGY 245
Score = 29.5 bits (66), Expect = 0.61
Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 33/188 (17%)
Query: 2 ALELFLQNSSKLKVLNISKNCL--KMLPSLNNENRYLEKLYLTSNALTDIGP---LNKCR 56
L S+L LN+S + L L + L++L++ + + D G + C+
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTCK 338
Query: 57 QLNTLHVAYNAITSLPDNC----------ISAWSEMEELVLSGNGIS--SLPNTIPQSWP 104
L L V + + N ++E ++ ++ +L TI ++ P
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL-ITIARNRP 397
Query: 105 HLRVLRLHSNHLTSCPTLYLS---SSLRVLDLSYNHLERLNLNTLI-----------PKQ 150
++ RL + L L + L RL+L+ L+ K+
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457
Query: 151 LQYLDVSG 158
++ L V+
Sbjct: 458 MEMLSVAF 465
Score = 26.4 bits (58), Expect = 7.4
Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%)
Query: 2 ALELFLQNSSKLKVLNISKNCL-----KMLPSLNNENRYLEKLYL--TSNALTDIG---P 51
L LK L++ ++ + L + L L + ++ ++
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206
Query: 52 LNKCRQLNTLHVAY----NAITSLPDNCISAWSEMEELVLSG------NGISSLPNTIPQ 101
+ +C L +L + + +L ++EEL G + S +
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRA----PQLEELGTGGYTAEVRPDVYSGLSVALS 262
Query: 102 SWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIPK--QLQYLDVS 157
LR L + + + S S L L+LSY ++ +L L+ + +LQ L V
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322
Query: 158 GN 159
Sbjct: 323 DY 324
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 27.7 bits (62), Expect = 2.2
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 105 HLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL-IPKQLQYLDVSGNPRLH 163
HL +++ L + T+ S++ R + + L +L L I ++ D + N ++H
Sbjct: 636 HLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKTLSQDFARNRQIH 695
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur
cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta
channel; HET: SAM LYS PLP; 2.10A {Clostridium
subterminale}
Length = 416
Score = 26.8 bits (59), Expect = 4.3
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 76 ISAWSEMEELVLSGNGISSLPNTIPQSW-------PHLRVLRLHSNHLTSCPTLYLSSSL 128
I ++ +++LSG + + + PH+ ++R+ S P +
Sbjct: 157 IRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELV 216
Query: 129 RVLD 132
+L
Sbjct: 217 NMLK 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,652,945
Number of extensions: 140650
Number of successful extensions: 3509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 474
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)