RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13911
(183 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 55.4 bits (132), Expect = 4e-10
Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 26/173 (15%)
Query: 8 QNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNA 67
+ L L+++ N LK + +L + L L L +N ++++ PL+ +L L + N
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 274
Query: 68 ITSLPD--------------------NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLR 107
I+++ + IS + L L N IS + S L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQ 332
Query: 108 VLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGN 159
L +N ++ +L +++ L +N + L L L ++ L ++
Sbjct: 333 RLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLNDQ 383
Score = 40.0 bits (92), Expect = 6e-05
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
+ + +KL+ L + N + + SL N + L N ++D+ PL ++ L +
Sbjct: 325 VSSLTKLQRLFFANNKVSDVSSLAN-LTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
Query: 67 A 67
A
Sbjct: 384 A 384
Score = 30.4 bits (67), Expect = 0.13
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
++ L + +K + + N L ++ ++N LTDI PL +L + + N
Sbjct: 44 DQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDITPLKNLTKLVDILMNNN 98
Score = 29.6 bits (65), Expect = 0.19
Identities = 10/63 (15%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 80 SEMEELVLSGNGISSLPNTIPQS-WPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHL 138
+ + E + + G +++ +T+ Q+ + L+ + S + ++L ++ S N L
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78
Query: 139 ERL 141
+
Sbjct: 79 TDI 81
Score = 29.6 bits (65), Expect = 0.22
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
K L +TD Q+ TL I S+ + + + ++ S N ++ +
Sbjct: 26 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDIT 82
Score = 28.8 bits (63), Expect = 0.36
Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
++ + K + S + ++ + L + I + L ++ + N +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78
Query: 69 TSLP 72
T +
Sbjct: 79 TDIT 82
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 46.9 bits (110), Expect = 1e-07
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 4/146 (2%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
N+ + + L++ + ++ +L + + + N + + R+L TL V N
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
I + + A ++ EL+L+ N + L + P + + + Y
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 127 SLRVLDLSYNHLERLNLNTLIPKQLQ 152
+ + + L+ + K+ Q
Sbjct: 134 VIYKV----PQVRVLDFQKVKLKERQ 155
Score = 31.4 bits (70), Expect = 0.029
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 110 RLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNH 168
+L + + + R LDL + + Q +D S N +D
Sbjct: 2 KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60
Score = 31.1 bits (69), Expect = 0.044
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 1/101 (0%)
Query: 41 LTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIP 100
LT+ + + L + I + N + + + + S N I L
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPL 61
Query: 101 QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL 141
++ + L L L+ N L L
Sbjct: 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 102
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 46.2 bits (108), Expect = 6e-07
Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 12/167 (7%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLHVAYN 66
+L++ N + + + +N + L L L +N ++ I P +L L+++ N
Sbjct: 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP----TL 122
+ LP+ ++EL + N I+ + ++ + V+ L +N L S
Sbjct: 90 QLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
Query: 123 YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHF 169
L + ++ ++ + +P L L + GN VD
Sbjct: 147 QGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASL 191
Score = 45.8 bits (107), Expect = 7e-07
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 9/163 (5%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAY 65
L +++ + + L + + +T I P L LH+
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLPPSLTELHLDG 180
Query: 66 NAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS 125
N IT + + + + +L LS N IS++ N + PHLR L L++N L P
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240
Query: 126 -SSLRVLDLSYNHLERLNLNTLIP-------KQLQYLDVSGNP 160
++V+ L N++ + N P + + NP
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283
Score = 38.1 bits (87), Expect = 3e-04
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 3/142 (2%)
Query: 35 YLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISS 94
+L + + L + P + L + N IT + D + L+L N IS
Sbjct: 11 HLRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 95 LPNTIPQSWPHLRVLRLHSNHLTSCP--TLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQ 152
+ L L L N L P LRV + + + N L +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 153 YLDVSGNPRLHVDPNHFKSYRS 174
L + ++ F+ +
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKK 151
Score = 31.9 bits (71), Expect = 0.029
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 57 QLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHL 116
L + + + +P + + L L N I+ + + ++ +L L L +N +
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 117 TSCPTLYLS--SSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
+ + L L LS N L+ L +PK LQ L V N V + F
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLK--ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125
Query: 175 YVRVYIQ 181
+ V +
Sbjct: 126 MIVVELG 132
Score = 24.6 bits (52), Expect = 8.7
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
L+ L+++ N L +P +++Y++ +YL +N ++ IG + C A + S
Sbjct: 219 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278
Query: 71 LPDNCISAWS 80
L N + W
Sbjct: 279 LFSNPVQYWE 288
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 45.6 bits (106), Expect = 1e-06
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 65 YNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYL 124
NA ++ + +EEL +S N + LP P L L NHL P L
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE--L 322
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVS 157
+L+ L + YN L IP+ ++ L ++
Sbjct: 323 PQNLKQLHVEYNPLREF---PDIPESVEDLRMN 352
Score = 41.3 bits (95), Expect = 2e-05
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 79 WSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHL 138
SE+ + N S+ ++ P L L + +N L P L L L S+NHL
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHL 316
Query: 139 ERLNLNTLIPKQLQYLDVSGNP 160
+ +P+ L+ L V NP
Sbjct: 317 AEV---PELPQNLKQLHVEYNP 335
Score = 39.4 bits (90), Expect = 1e-04
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
L L+V+ N + LP +E L+ S N ++ +P +L+ L + N
Sbjct: 283 PPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPELP----QNLKQLHVEYN 334
Query: 115 HLTSCPTLYLSSSLRVLDLS 134
L P + S+ L ++
Sbjct: 335 PLREFPD--IPESVEDLRMN 352
Score = 37.9 bits (86), Expect = 3e-04
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
L+ LN+S N L LP+L LE+L + N L ++ L + L LHV YN +
Sbjct: 284 PSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPEL--PQNLKQLHVEYNPLRE 338
Query: 71 LPD 73
PD
Sbjct: 339 FPD 341
Score = 36.3 bits (82), Expect = 0.001
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 83 EELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLN 142
EL L+ G+SSLP P HL L N LT P L SL+ L + N+L+ L+
Sbjct: 41 HELELNNLGLSSLPELPP----HLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALS 94
Score = 32.1 bits (71), Expect = 0.028
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
RQ + L + ++SLP+ +E LV S N ++ LP L+ L + +N
Sbjct: 37 DRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQS----LKSLLVDNN 88
Query: 115 HLTSCPTLY 123
+L + L
Sbjct: 89 NLKALSDLP 97
Score = 27.1 bits (58), Expect = 1.5
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPL 52
+L+ L S N L +P L L++L++ N L + +
Sbjct: 304 PRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREFPDI 342
Score = 26.7 bits (57), Expect = 1.7
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
+ L ++ L LP L +LE L + N+LT++ L + L +L V N + +
Sbjct: 38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA 92
Query: 71 LPDNCISAW 79
L D
Sbjct: 93 LSDLPPLLE 101
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 38.2 bits (88), Expect = 1e-04
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 14 KVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP-LNKCRQLNTLHVAYNAITSLP 72
+VL+++ L +L L + L L+ N L + P L R L L + NA+ ++
Sbjct: 1 RVLHLAHKDLTVLCHLEQ-LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 73 DNCISAWSEMEELVLSGNGISSLPNTIP-QSWPHLRVLRLHSNHLTSCPTL 122
++EL+L N + P S P L +L L N L +
Sbjct: 60 GVAN--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 35.8 bits (82), Expect = 6e-04
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 39 LYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNT 98
L+L LT + L + + L +++N + +LP + +
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV- 61
Query: 99 IPQSWPHLRVLRLHSNHLTSCP---TLYLSSSLRVLDLSYNHLERL 141
+ P L+ L L +N L L L +L+L N L +
Sbjct: 62 --ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 34.7 bits (79), Expect = 0.002
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 60 TLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSC 119
LH+A+ +T L + + L LS N + +LP + + L VL+ N L +
Sbjct: 2 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENV 58
Query: 120 PTLYLSSSLRVLDLSYNHLERLNLNTLI--PKQLQYLDVSGNP 160
+ L+ L L N L++ + +L L++ GN
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 101
Score = 32.4 bits (73), Expect = 0.012
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L+ + L++S N L+ LP R LE L + NAL ++ + +L L + N
Sbjct: 16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75
Query: 67 AITSLPD-NCISAWSEMEELVLSGNGISSLPNTIPQ---SWPHLRVL 109
+ + + + L L GN + + P + +
Sbjct: 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 29.3 bits (65), Expect = 0.14
Identities = 20/70 (28%), Positives = 26/70 (37%)
Query: 107 RVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDP 166
RVL L LT L + LDLS+N L L + L+ L S N +VD
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 167 NHFKSYRSYV 176
+
Sbjct: 61 VANLPRLQEL 70
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 38.6 bits (88), Expect = 2e-04
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 12 KLKVLNISKNCLKML-PSLNNENRYLEKLYLTSNALTDI--GPLNKCRQLNTLHVAYNAI 68
L+ L + N L+ L + L L+L N ++ + L+ L + N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 69 TSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLT-SCPTLYLSSS 127
+ + + L L N +S+LP L+ LRL+ N C L +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249
Query: 128 LRVLDLSYNHL 138
L+ S + +
Sbjct: 250 LQKFRGSSSEV 260
Score = 27.9 bits (60), Expect = 0.75
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
P C+ G+ ++P IP + + LH N ++ P
Sbjct: 3 PGACVCYNEPKVTTSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVP 48
Score = 24.4 bits (51), Expect = 9.1
Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 6 FLQNSSKLKVLNISKNCLKMLPSLNNEN-RYLEKLYLTSNALTDIGP--LNKCRQLNTLH 62
++ L L + N + +P L++L L N + + P +L TL+
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGI--------------------SSLPNTIPQS 102
+ N +++LP ++ ++ L L+ N S +P ++PQ
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267
Query: 103 WPHLRVLRLHSNHLTSC 119
+ RL +N L C
Sbjct: 268 LAGRDLKRLAANDLQGC 284
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 37.0 bits (84), Expect = 6e-04
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 2/156 (1%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
L ++L LN+ + L L + + L L V++N
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP--TLYL 124
+TSLP + E++EL L GN + +LP + P L L L +N+LT P L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
+L L L N L + L + + GNP
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206
Score = 33.1 bits (74), Expect = 0.011
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 76 ISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVLDL 133
+S + E+ +++LP +P +L L N L + L + L L+L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 134 SYNH 137
Sbjct: 63 DRAE 66
Score = 31.6 bits (70), Expect = 0.045
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 106 LRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP-KQLQYLDVSGNPRLHV 164
+ +LT+ P L +L LS N L +L TL+P +L L++ +
Sbjct: 12 HLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70
Query: 165 DPNHF 169
+
Sbjct: 71 QVDGT 75
Score = 30.1 bits (66), Expect = 0.14
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 53 NKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLH 112
+K ++ +T+LP + + L LS N + + + L L L
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 113 SNHLTSCPTLYLSSSL 128
LT L
Sbjct: 64 RAELTKLQVDGTLPVL 79
Score = 26.2 bits (56), Expect = 2.5
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 125 SSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
+S ++ +L L + +PK L +S N Y
Sbjct: 9 VASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTR 56
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.8 bits (79), Expect = 0.003
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLN----KCRQLNTLH 62
L + VLN + L + L L L++N L + ++ K L L+
Sbjct: 38 LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97
Query: 63 VAYNAITSLPDNCISAWSEMEELVLSGNGISSLP 96
++ N + S + ++EEL L GN +S
Sbjct: 98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131
Score = 31.7 bits (71), Expect = 0.025
Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRL 111
++K + + + S PD + A + L + ++L I ++ P L L L
Sbjct: 16 MSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLRI-IEENIPELLSLNL 72
Query: 112 HSNHLTSCPTLYLS----SSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSGNPRLHVDP 166
+N L + +L++L+LS N L+ L+ + +L+ L + GN
Sbjct: 73 SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132
Query: 167 NHFKSYRSYVR 177
+ +Y S +R
Sbjct: 133 DQS-TYISAIR 142
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.9 bits (78), Expect = 0.003
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
+ N + LP++ S L +S I SLP+ ++ LR
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--Y 233
Query: 115 HLTSCPTL 122
+L PTL
Sbjct: 234 NLKKLPTL 241
Score = 27.6 bits (59), Expect = 0.74
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 105 HLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTL 146
RV + +T P+ L + L L +
Sbjct: 9 SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAF 49
Score = 27.6 bits (59), Expect = 0.80
Identities = 15/87 (17%), Positives = 33/87 (37%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
+ L + N I + + + E + N + LPN + +L +
Sbjct: 152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 211
Query: 115 HLTSCPTLYLSSSLRVLDLSYNHLERL 141
+ S P+ L + ++ S +L++L
Sbjct: 212 RIHSLPSYGLENLKKLRARSTYNLKKL 238
Score = 26.8 bits (57), Expect = 1.3
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 52 LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPN 97
+ L ++ I SLP + ++ S + LP
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLKKLPT 240
Score = 26.4 bits (56), Expect = 1.8
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 119 CPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRSYVRV 178
C S RV + + + + +P+ L + F + ++
Sbjct: 1 CHHRICHCSNRVFLCQESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 58
Query: 179 YIQ 181
I
Sbjct: 59 EIS 61
Score = 26.4 bits (56), Expect = 1.9
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 74 NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLS--SSLRVL 131
+ + E L L+ NGI + N + +N+L P S +L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206
Query: 132 DLSYNHLERLNLNTLIP-KQLQYLDVSGNPRL 162
D+S + L L K+L+ +L
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238
Score = 26.0 bits (55), Expect = 2.4
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 88 SGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ ++ +P+ +P + LR L
Sbjct: 16 QESKVTEIPSDLP---RNAIELRFVLTKLRVIQ 45
Score = 24.5 bits (51), Expect = 9.4
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 59 NTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
+ +T +P + EL + + + L + + N
Sbjct: 11 RVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 34.9 bits (78), Expect = 0.003
Identities = 12/117 (10%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Query: 10 SSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGP------LNKCRQLNTLHV 63
LK+ I+ K + ++ E+ ++++ L+ N + + + L
Sbjct: 7 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 64 AYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCP 120
+ + D A + + +L + ++ + P + + +
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Score = 29.1 bits (63), Expect = 0.32
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 114 NHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP------KQLQYLDVSGNP 160
+ + + L+ L L YN +E + TL L +L+++GN
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313
Score = 27.5 bits (59), Expect = 1.0
Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 87 LSGNGISSLPNTIPQSWPHLRVLRLHSNHLTS------CPTLYLSSSLRVLDLSYNHLER 140
++ S+ + + ++ + L N + + + L + + S R
Sbjct: 15 ITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR 73
Query: 141 LNLNTLIPKQLQYLDVSGNPRLHVDPNHFKSYRS 174
+ +L + P+LH ++
Sbjct: 74 VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 107
Score = 26.4 bits (56), Expect = 2.0
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 30 NNENRYLEKLYLTSNALTDIGPL-------NKCRQLNTLHVAYNAITSLPDNC 75
EN L+ L L N + K L L + N + D
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321
Score = 26.4 bits (56), Expect = 2.4
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 11/79 (13%)
Query: 40 YLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTI 99
L L+ G + L L N I + + +L I
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE-----------LDAVRTLKTVI 297
Query: 100 PQSWPHLRVLRLHSNHLTS 118
+ P L L L+ N +
Sbjct: 298 DEKMPDLLFLELNGNRFSE 316
Score = 24.5 bits (51), Expect = 9.2
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 1 MALELFLQNSSKLKVLNISKNCLK------MLPSLNNENRYLEKLYLTSNALTDIGPL 52
+ + L+ L + N ++ + ++ + L L L N ++ +
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 34.2 bits (77), Expect = 0.005
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 71 LPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
++ S++ L N IS + S P+L + L +N ++ L +S+L +
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSPLANTSNLFI 221
Query: 131 LDLS 134
+ L+
Sbjct: 222 VTLT 225
Score = 30.0 bits (66), Expect = 0.13
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 101 QSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVS 157
+ L L+ N ++ L +L + L N + + L L + ++
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANT--SNLFIVTLT 225
Score = 28.8 bits (63), Expect = 0.33
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLS 88
L L N ++DI PL L +H+ N I+ + ++ S + + L+
Sbjct: 175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
Score = 26.1 bits (56), Expect = 2.1
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQS-WPHLRVLRLHSNHLTSCPTLYLSSSLRV 130
N I + + G S++ +T+ Q+ + L +T+ + ++L
Sbjct: 8 AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIG 67
Query: 131 LDLSYNHL 138
L+L N +
Sbjct: 68 LELKDNQI 75
Score = 26.1 bits (56), Expect = 2.3
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
+ + K+ + + + + + L +T I + L L + N I
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDG-ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Query: 69 TSLPDNC 75
T L
Sbjct: 76 TDLAPLK 82
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 33.4 bits (74), Expect = 0.012
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 22 CLKMLPSLNNENRYLEKLYLTSNALTDIGP------LNKCRQLNTLHVAYNAIT-----S 70
++ L L L+L ++D L L L ++ N +
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416
Query: 71 LPDNCISAWSEMEELVLSGNGIS----SLPNTIPQSWPHLRVL 109
L ++ +E+LVL S + + P LRV+
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 31.9 bits (70), Expect = 0.034
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 89 GNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS------SLRVLDLSYNHLERLN 142
G+ L + Q LRVL L ++ L++ SLR LDLS N L
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413
Query: 143 LNTLI------PKQLQYLDVSGN 159
+ L+ L+ L +
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDI 436
Score = 29.9 bits (65), Expect = 0.15
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 36 LEKLYLTSNALTDIGP---LNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGI 92
++ L + L+D L +Q + + +T
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE-------------------ARC 44
Query: 93 SSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLN 144
+ + + + P L L L SN L + L+ +++L+L
Sbjct: 45 KDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQ 92
Score = 28.4 bits (61), Expect = 0.52
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS-----SLPNTIPQSWPHLRVL 109
Q++ + + L S + L L+ +S SL T+ + LR L
Sbjct: 344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN-HSLREL 402
Query: 110 RLHSNHLTSCPTLYLSSSLRVLD--LSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV 164
L +N L L L S+R L L + + + +LQ L+ P L V
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD-KPSLRV 458
Score = 28.0 bits (60), Expect = 0.79
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 81 EMEELVLSGNGISSLP-NTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLE 139
+++ L + +S + +V+RL LT +SS+LRV
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-------- 54
Query: 140 RLNLNTLIPKQLQYLDVSGN 159
L L++ N
Sbjct: 55 ---------PALAELNLRSN 65
Score = 27.2 bits (58), Expect = 1.1
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 1 MALELFLQNSSKLKVLNISKNCL------KMLPSLNNENRYLEKLYLTSNALTDIGP 51
+L L + L+ L++S NCL +++ S+ LE+L L ++
Sbjct: 387 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443
Score = 27.2 bits (58), Expect = 1.3
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 3 LELFLQNSSKLKVLNISKN-----CLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQ 57
L + +V+ + K + S N L +L L SN L D+G +
Sbjct: 19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78
Query: 58 LNTLH 62
L T
Sbjct: 79 LQTPS 83
Score = 26.1 bits (55), Expect = 2.6
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 125 SSSLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGN 159
S ++ LD+ L L+P +Q Q + +
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC 37
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 32.0 bits (71), Expect = 0.025
Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)
Query: 4 ELFLQNSSKLKVLNISKNC--LKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTL 61
E +++ + + + ++ + + + + + L L++N + I L+ L L
Sbjct: 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRIL 75
Query: 62 HVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPT 121
+ N I + + A + E + S + L + +
Sbjct: 76 SLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK 135
Query: 122 LYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLHV 164
L L L L+ N L + + V P L
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 32.0 bits (71), Expect = 0.029
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 103 WPHLRVLRLHSNHLTSC--PTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
+L L L +N + L L L++S+N+L ++ + N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Query: 161 RL 162
L
Sbjct: 303 CL 304
Score = 30.1 bits (66), Expect = 0.13
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 74 NCISAWSEMEELVLSGNGIS-SLPNTIPQSWPHLRVLRLHSNHLTSC-PTLYLSSSLRVL 131
+ + L L N I +LP + L L + N+L P V
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 132 DLSYN 136
+ N
Sbjct: 297 AYANN 301
Score = 27.0 bits (58), Expect = 1.2
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 7 LQNSSKLKVLNISKNCLK-MLPSLNNENRYLEKLYLTSNALTDIGPLNKC 55
L L LN+S N L +P N R + +N PL C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQR-FDVSAYANNKCLCGSPLPAC 312
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 30.1 bits (66), Expect = 0.086
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 55 CRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSN 114
+ L + + A + E + + + L + LR L + +
Sbjct: 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 115 HLTSCPTL--YLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNP 160
L + + L L+LS+N LE L+ T+ LQ L +SGNP
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 29.6 bits (65), Expect = 0.16
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 22/167 (13%)
Query: 11 SKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAITS 70
+ + + + + +K + + + KL+L N LTDI PL + L L + N +
Sbjct: 46 NSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 104
Query: 71 LPDNCISAWSEMEE------------------LVLSGNGISSLPNTIPQSWPHLRVLRLH 112
L + L T+ L L L
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 164
Query: 113 SNHLTSCPTLYLSSSLRVLDLSYNHLERL-NLNTLIPKQLQYLDVSG 158
N ++ L + L+ L LS NH+ L L L K L L++
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL--KNLDVLELFS 209
Score = 27.7 bits (60), Expect = 0.66
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 80 SEMEELVLSGNGISSLPNTIPQS-WPHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHL 138
E + S+ + + Q+ + + +++ + S + ++ L L+ N L
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80
Score = 25.7 bits (55), Expect = 3.0
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 38 KLYLTSNALTDIGPLNKCRQLNTLHVAYNAITSLPDNCISAWSEMEELVLSGNGIS 93
K L ++TD N+ ++ + + I S+ I + +L L+GN ++
Sbjct: 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 26.6 bits (57), Expect = 1.6
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 5/135 (3%)
Query: 7 LQNSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYN 66
++ + L +N S N L + L N + ++ L + T
Sbjct: 58 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN-----NQIADITPLANLTNLTGLT 112
Query: 67 AITSLPDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSS 126
+ + + L + + + L+ L SN +T L +
Sbjct: 113 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT 172
Query: 127 SLRVLDLSYNHLERL 141
+L LD+S N + +
Sbjct: 173 TLERLDISSNKVSDI 187
Score = 26.2 bits (56), Expect = 2.2
Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 18/169 (10%)
Query: 9 NSSKLKVLNISKNCLKMLPSLNNENRYLEKLYLTSNALTDIGPLNKCRQLNTLHVAYNAI 68
++ + K + S + ++ + L + I + L ++ + N +
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 74
Query: 69 TSLPD-------------NCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNH 115
T + N A + + G++ N I P + L+
Sbjct: 75 TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134
Query: 116 LTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIP----KQLQYLDVSGNP 160
L+S +S+ + L + + L P L+ LD+S N
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 183
Score = 26.2 bits (56), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 36 LEKLYLTSNALTDIGPLNKCRQLNTL 61
LE+L ++SN ++DI L K L +L
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESL 199
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 26.6 bits (57), Expect = 1.9
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 105 HLRVLRLHSNHLTSCPTLYLSS-SLRVLDLSYNHLERLNLNTLIP--KQLQYLDVSGNPR 161
+ R + + + S ++ +DLS + +E L+ ++ +LQ L + G
Sbjct: 24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 162 LHVDPNHFKSYRS 174
N +
Sbjct: 84 SDPIVNTLAKNSN 96
Score = 25.1 bits (53), Expect = 5.2
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 107 RVLRLHSNHL-TSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGN 159
+ L L +L LS + + +++ P ++Q++D+S +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56
>d1spgb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Fish (Leiostomus
xanthurus) [TaxId: 59837]}
Length = 147
Score = 24.6 bits (53), Expect = 5.6
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 161 RLHVDPNHFKSYRSYVRVYIQ 181
++HVDP++F+ + + +
Sbjct: 95 KIHVDPDNFRLLGEIITMCVG 115
>d1adta1 a.54.1.1 (A:176-265) Domain of early E2A DNA-binding
protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Length = 90
Score = 23.6 bits (51), Expect = 7.6
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 1 MALELFLQNSSKLKVLNISKNCLKMLPS------------LNNENRYLEKLYLTSNALTD 48
+E K V N K K+LP LN E+R L+ + ++
Sbjct: 8 KGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKTWLNEEHRGLQLTFTSNKTFVT 67
Query: 49 I 49
+
Sbjct: 68 M 68
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 24.4 bits (51), Expect = 7.6
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 72 PDNCISAWSEMEELVLSGNGISSLPNTIPQSWPHLRVLRLHSNHLTSCPTLYLSSSLRVL 131
P C + ++ +G G+ +P IP H L L+ N L + L L L
Sbjct: 3 PAMCHCEGTTVD---CTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHL 56
Query: 132 DLSYNH 137
Sbjct: 57 VKLELK 62
>d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish
akaei (Dasyatis akajei) [TaxId: 31902]}
Length = 141
Score = 24.2 bits (52), Expect = 8.8
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 104 PHLRVLRLHSNHLTSCPTLYLSSSLRVLDLSYNHLERLNLNTLIPKQLQYLDVSGNPRLH 163
P + + +C RV++ + L+ L + L L
Sbjct: 37 PQTKTYFSKFSGFEACNEQVKKHGKRVMNALADATHHLDNLHLHLEDLARK---HGENLL 93
Query: 164 VDPNHFK 170
VDP++F
Sbjct: 94 VDPHNFH 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,918
Number of extensions: 27697
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 118
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)