BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13912
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NV31|IMP3_HUMAN U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens
GN=IMP3 PE=1 SV=1
Length = 184
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 43/46 (93%), Gaps = 1/46 (2%)
Query: 1 MVRKLKYHEQKLLKKVDFISWE-ADNNLHEVKIMRRFGIQKRQDYT 45
MVRKLK+HEQKLLK+VDF++WE D+NLHE++++RR+ +Q+R+DYT
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYT 46
>sp|Q3T0M3|IMP3_BOVIN U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus
GN=IMP3 PE=2 SV=1
Length = 184
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 43/46 (93%), Gaps = 1/46 (2%)
Query: 1 MVRKLKYHEQKLLKKVDFISWE-ADNNLHEVKIMRRFGIQKRQDYT 45
MVRKLK+HEQKLLK+VDF++WE D+NLHE++++RR+ +Q+R+DYT
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYT 46
>sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus
GN=Imp3 PE=2 SV=1
Length = 184
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 43/46 (93%), Gaps = 1/46 (2%)
Query: 1 MVRKLKYHEQKLLKKVDFISWE-ADNNLHEVKIMRRFGIQKRQDYT 45
MVRKLK+HEQKLLK+VDF++WE D+NLHE++++RR+ +Q+R++YT
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYT 46
>sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=IMP3 PE=1 SV=1
Length = 183
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDY 44
MVRKLK+HEQKLLKKVDF+ W+ D + ++MR + IQ R+DY
Sbjct: 1 MVRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDY 44
>sp|O01513|YS4L_CAEEL Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans
GN=C48B6.2 PE=3 SV=1
Length = 183
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDY 44
MVRKLK HEQKLLKK DF+SW+ D + ++R+F ++KR+ Y
Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHY 44
>sp|O13835|IMP3_SCHPO U3 small nucleolar ribonucleoprotein protein imp3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp3 PE=3 SV=1
Length = 183
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 2 VRKLKYHEQKLLKKVDFISWEADNNLH-EVKIMRRFGIQKRQDY 44
+R LK+HEQKLL+KVDF++++ D+N H +V +MRR+ I KR++Y
Sbjct: 1 MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEY 44
>sp|Q01688|YS4L_PNECA Putative 37S ribosomal protein S4-like (Fragment) OS=Pneumocystis
carinii GN=RBP PE=3 SV=1
Length = 169
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 2 VRKLKYHEQKLLKKVDFISWEADNNLH-EVKIMRRFGIQKRQDY 44
+RKLKYHE+KLL K DF++++ D+N H +V ++RR+ I +R+DY
Sbjct: 1 MRKLKYHEKKLLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDY 44
>sp|A0AIC1|DPO3_LISW6 DNA polymerase III PolC-type OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=polC PE=3
SV=1
Length = 1444
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPELTV 60
M+ KL ++ K+ FI N++ E I +RF + ++Y AGF P L +
Sbjct: 113 MIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQAKIIENYGKAGF------PRLAM 166
Query: 61 LLH 63
+H
Sbjct: 167 KMH 169
>sp|Q92C34|DPO3_LISIN DNA polymerase III PolC-type OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=polC PE=3 SV=1
Length = 1444
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPELTV 60
M+ KL ++ K+ FI N++ E I +RF + ++Y AGF P L +
Sbjct: 113 MIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQAKIIENYGKAGF------PRLAM 166
Query: 61 LLH 63
+H
Sbjct: 167 KMH 169
>sp|Q720A2|DPO3_LISMF DNA polymerase III PolC-type OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=polC PE=3 SV=1
Length = 1444
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPELTV 60
M+ KL ++ K+ FI N++ E I +RF + + Y AGF P L +
Sbjct: 113 MIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQTKIIESYGKAGF------PRLAM 166
Query: 61 LLHF 64
+H
Sbjct: 167 KMHL 170
>sp|Q8Y7G1|DPO3_LISMO DNA polymerase III PolC-type OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=polC PE=3 SV=1
Length = 1444
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 1 MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPELTV 60
M+ KL ++ K+ FI N++ E I +RF + + Y AGF P L +
Sbjct: 113 MIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQTKIIESYGKAGF------PRLAM 166
Query: 61 LLH 63
+H
Sbjct: 167 KMH 169
>sp|Q9C1W8|PPN1_SCHPO Endopolyphosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=ppn1 PE=3 SV=1
Length = 577
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 5 LKYHEQKLLKKVDFISWEADNNLHE 29
LK H+ +L +DFI W DN+ H+
Sbjct: 113 LKEHQDDVLGGIDFILWTGDNSRHD 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,474,817
Number of Sequences: 539616
Number of extensions: 992442
Number of successful extensions: 2365
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2348
Number of HSP's gapped (non-prelim): 12
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)