Query psy13912
Match_columns 76
No_of_seqs 112 out of 148
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 23:40:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_D Ribosomal protein S4 co 98.5 6.4E-09 2.2E-13 73.7 -1.0 45 16-60 14-58 (181)
2 3j20_D 30S ribosomal protein S 98.4 2.8E-08 9.5E-13 70.8 -1.3 43 16-58 13-55 (180)
3 3u5c_J 40S ribosomal protein S 97.9 1.1E-06 3.8E-11 63.6 -1.0 43 18-60 16-58 (197)
4 3iz6_C 40S ribosomal protein S 97.6 2.8E-06 9.7E-11 61.4 -2.7 48 10-57 10-57 (195)
5 1q8c_A Hypothetical protein Mg 22.9 24 0.00083 24.7 0.7 23 42-64 85-107 (151)
6 1nlx_A PHL P VI, pollen allerg 18.3 35 0.0012 23.1 0.7 16 2-17 1-16 (111)
7 3rio_A PTSGHI operon antitermi 12.5 59 0.002 21.4 0.6 31 27-57 53-83 (180)
8 2nn4_A Hypothetical protein YQ 11.9 1.4E+02 0.0046 18.5 2.1 40 7-46 6-51 (72)
9 2lf8_A Transcription factor ET 15.4 50 0.0017 22.5 0.0 41 16-56 21-66 (128)
10 2dlx_A UBX domain-containing p 11.2 1.5E+02 0.005 19.1 2.2 30 11-41 72-102 (153)
No 1
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=98.53 E-value=6.4e-09 Score=73.67 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=40.5
Q ss_pred cccceecccCchhHHHHHHhhcCCCChhhHHhhcCCCCCchHHHH
Q psy13912 16 VDFISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPELTV 60 (76)
Q Consensus 16 VdFl~WK~d~n~RE~~vmrRY~iq~ReDY~kYNkl~~~~~~~~t~ 60 (76)
..+..|+.|++++|.++|++|||++++||.+||.+||.+|.+---
T Consensus 14 ~p~~~w~~~~~~~E~~l~~~YgL~nk~e~w~~~~~~~~iR~~ar~ 58 (181)
T 2xzm_D 14 TPRRPYEKERLDNEMKLIGTFGLKNKREVWRVQMILAKFRKAARE 58 (181)
T ss_dssp CCSSTTCHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999988876443
No 2
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.36 E-value=2.8e-08 Score=70.79 Aligned_cols=43 Identities=7% Similarity=0.130 Sum_probs=38.6
Q ss_pred cccceecccCchhHHHHHHhhcCCCChhhHHhhcCCCCCchHH
Q psy13912 16 VDFISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPEL 58 (76)
Q Consensus 16 VdFl~WK~d~n~RE~~vmrRY~iq~ReDY~kYNkl~~~~~~~~ 58 (76)
...-.|+.|++.+|.++|++|+|++++||.+||++++.++.+-
T Consensus 13 ~p~~pw~~~r~~~E~kl~~~YgL~nk~e~wk~~~~l~~~r~~A 55 (180)
T 3j20_D 13 TPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRA 55 (180)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHTCSCTHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998877653
No 3
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.88 E-value=1.1e-06 Score=63.63 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=38.1
Q ss_pred cceecccCchhHHHHHHhhcCCCChhhHHhhcCCCCCchHHHH
Q psy13912 18 FISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPELTV 60 (76)
Q Consensus 18 Fl~WK~d~n~RE~~vmrRY~iq~ReDY~kYNkl~~~~~~~~t~ 60 (76)
.--|+.+.+.+|.++|++|+|++++||.+||.++|.+|.+---
T Consensus 16 ~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~ 58 (197)
T 3u5c_J 16 KRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARD 58 (197)
T ss_dssp SSSCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999988765443
No 4
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.59 E-value=2.8e-06 Score=61.43 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=39.8
Q ss_pred hhhhhhcccceecccCchhHHHHHHhhcCCCChhhHHhhcCCCCCchH
Q psy13912 10 QKLLKKVDFISWEADNNLHEVKIMRRFGIQKRQDYTTAGFKPNPVPPE 57 (76)
Q Consensus 10 qKLLKKVdFl~WK~d~n~RE~~vmrRY~iq~ReDY~kYNkl~~~~~~~ 57 (76)
++-|-+.----|+.+.+.+|.++|++|+|++++||.+||.++|.+|.+
T Consensus 10 k~~~~~~P~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~ 57 (195)
T 3iz6_C 10 KTYSTKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNN 57 (195)
T ss_dssp HHHHSCCSSCCCCCSHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHSS
T ss_pred ceeCCCCCCCchhHHhhHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 333444555679999999999999999999999999999999877654
No 5
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=22.89 E-value=24 Score=24.67 Aligned_cols=23 Identities=13% Similarity=-0.126 Sum_probs=10.6
Q ss_pred hhhHHhhcCCCCCchHHHHHHHH
Q psy13912 42 QDYTTAGFKPNPVPPELTVLLHF 64 (76)
Q Consensus 42 eDY~kYNkl~~~~~~~~t~~~~~ 64 (76)
|--++||++||.--.++|-+.+.
T Consensus 85 eiq~kynkisgkkidllt~avil 107 (151)
T 1q8c_A 85 EIQTKYNKISGKKIDLLTTAVVL 107 (151)
T ss_dssp SCCCC--------CCHHHHHHHH
T ss_pred HHHHHhcccccchhhHHHHHHHH
Confidence 34479999999999999987653
No 6
>1nlx_A PHL P VI, pollen allergen PHL P 6; four-helix-bundle, structural genomics, PS protein structure initiative; 2.80A {Phleum pratense} SCOP: a.24.17.1
Probab=18.29 E-value=35 Score=23.09 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=11.2
Q ss_pred cccchhHHhhhhhhcc
Q psy13912 2 VRKLKYHEQKLLKKVD 17 (76)
Q Consensus 2 mRkLK~HEqKLLKKVd 17 (76)
|.|---+||||+.+||
T Consensus 1 ~gkatT~eQkl~E~iN 16 (111)
T 1nlx_A 1 MGKATTEEQKLIEDVN 16 (111)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHh
Confidence 4566678999999987
No 7
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix bundle, transcriptional antitermination, transcription; 1.99A {Bacillus subtilis}
Probab=12.52 E-value=59 Score=21.41 Aligned_cols=31 Identities=6% Similarity=0.025 Sum_probs=22.3
Q ss_pred hhHHHHHHhhcCCCChhhHHhhcCCCCCchH
Q psy13912 27 LHEVKIMRRFGIQKRQDYTTAGFKPNPVPPE 57 (76)
Q Consensus 27 ~RE~~vmrRY~iq~ReDY~kYNkl~~~~~~~ 57 (76)
.-+.++-++|.+++.++...|..+...+++.
T Consensus 53 i~~~~iek~f~l~~~~~~~~~~~ll~~i~~e 83 (180)
T 3rio_A 53 IEDKGYDKMFILKDEKEQKQFKKLLDYVDEK 83 (180)
T ss_dssp EECCSSSCCEEECSHHHHHHHHHHTTTSCHH
T ss_pred eCcccceEEEEcCChhhHHHHHHHHHhCCHH
Confidence 3445677788888877777787777777763
No 8
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=11.86 E-value=1.4e+02 Score=18.49 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=31.1
Q ss_pred hHHhhhhhhcccceecccCc------hhHHHHHHhhcCCCChhhHH
Q psy13912 7 YHEQKLLKKVDFISWEADNN------LHEVKIMRRFGIQKRQDYTT 46 (76)
Q Consensus 7 ~HEqKLLKKVdFl~WK~d~n------~RE~~vmrRY~iq~ReDY~k 46 (76)
|--|.|||+..++-|=.|.- .-|.+-+.+.++=++++|..
T Consensus 6 YDVqQLLK~fG~~IY~GdR~~DielM~~El~~Ly~~~lId~~~y~~ 51 (72)
T 2nn4_A 6 YDVQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWAR 51 (72)
T ss_dssp HHHHHHHHTTTCCCCCSCHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34588999999998877642 24677788999999999864
No 9
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=15.38 E-value=50 Score=22.51 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=30.7
Q ss_pred cccceecccCc-----hhHHHHHHhhcCCCChhhHHhhcCCCCCch
Q psy13912 16 VDFISWEADNN-----LHEVKIMRRFGIQKRQDYTTAGFKPNPVPP 56 (76)
Q Consensus 16 VdFl~WK~d~n-----~RE~~vmrRY~iq~ReDY~kYNkl~~~~~~ 56 (76)
-+++.|...++ .--.+|.+.++.++-..=-.|.++|+.+|.
T Consensus 21 ~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRy 66 (128)
T 2lf8_A 21 ENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRH 66 (128)
Confidence 36888986433 233588899998887777889999988774
No 10
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=11.22 E-value=1.5e+02 Score=19.12 Aligned_cols=30 Identities=13% Similarity=0.465 Sum_probs=20.6
Q ss_pred hhhhhcccceecccCchhH-HHHHHhhcCCCC
Q psy13912 11 KLLKKVDFISWEADNNLHE-VKIMRRFGIQKR 41 (76)
Q Consensus 11 KLLKKVdFl~WK~d~n~RE-~~vmrRY~iq~R 41 (76)
++|++ +|+-|+.|.+.-| .+++++|.+...
T Consensus 72 ~~l~~-~fv~v~~d~~~~~~~~l~~~y~v~~~ 102 (153)
T 2dlx_A 72 NIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDF 102 (153)
T ss_dssp HHHHH-TEEEEEEESSSHHHHHHHHHHTCCSS
T ss_pred HHHHc-CeEEEEEecCCHhHHHHHHHcCCCCC
Confidence 34433 8999998776544 467889987643
Done!