Query psy13912
Match_columns 76
No_of_seqs 112 out of 148
Neff 2.6
Searched_HMMs 13730
Date Fri Aug 16 23:40:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13912.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13912hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjla1 a.2.14.1 (A:7-110) Dna 32.4 5.6 0.00041 24.1 0.5 12 6-17 83-94 (104)
2 d1q8ca_ a.79.1.2 (A:) Hypothet 25.2 9.8 0.00071 24.8 0.7 23 42-64 74-96 (140)
3 d1ov2a_ a.13.1.1 (A:) alpha-2- 19.6 30 0.0022 20.7 2.1 38 5-43 33-79 (82)
4 d1eera_ a.26.1.2 (A:) Erythrop 18.3 11 0.00082 25.2 -0.1 12 14-25 44-55 (166)
5 d1v7mv_ a.26.1.2 (V:) Thrombop 16.7 12 0.00084 24.6 -0.4 12 14-25 38-49 (145)
6 d1nlxa_ a.24.17.1 (A:) Pollen 14.9 20 0.0015 22.3 0.5 10 8-17 4-13 (104)
7 d2nn4a1 a.272.1.1 (A:1-62) Hyp 14.5 49 0.0035 18.6 2.1 40 7-46 5-50 (62)
8 d2j7ja2 g.37.1.1 (A:29-57) Tra 13.6 22 0.0016 17.7 0.3 7 4-10 20-26 (29)
9 d1zbxb1 d.339.1.1 (B:485-613) 11.0 32 0.0023 21.9 0.5 30 18-47 30-59 (129)
10 d2cp8a1 a.5.2.1 (A:8-48) Migra 10.1 38 0.0028 18.0 0.6 9 9-17 20-28 (41)
No 1
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=32.35 E-value=5.6 Score=24.11 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=10.2
Q ss_pred hhHHhhhhhhcc
Q psy13912 6 KYHEQKLLKKVD 17 (76)
Q Consensus 6 K~HEqKLLKKVd 17 (76)
.-+|+|||+|+|
T Consensus 83 ~dRerKLL~KI~ 94 (104)
T d1tjla1 83 RDRERKLIKKIE 94 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457999999987
No 2
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=25.19 E-value=9.8 Score=24.77 Aligned_cols=23 Identities=13% Similarity=-0.126 Sum_probs=10.6
Q ss_pred hhhHHhhcCCCCCchHHHHHHHH
Q psy13912 42 QDYTTAGFKPNPVPPELTVLLHF 64 (76)
Q Consensus 42 eDY~kYNkl~~~~~~~~t~~~~~ 64 (76)
|--++||++||.--.++|-+.+.
T Consensus 74 eiq~kynkisgkkidllt~avil 96 (140)
T d1q8ca_ 74 EIQTKYNKISGKKIDLLTTAVVL 96 (140)
T ss_dssp SCCCC--------CCHHHHHHHH
T ss_pred HHHHHhcccccchhhHHHHHHHH
Confidence 34479999999999999987653
No 3
>d1ov2a_ a.13.1.1 (A:) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.61 E-value=30 Score=20.69 Aligned_cols=38 Identities=24% Similarity=0.464 Sum_probs=22.8
Q ss_pred chhHHhh--hhhhcccceecccCchhHH-------HHHHhhcCCCChh
Q psy13912 5 LKYHEQK--LLKKVDFISWEADNNLHEV-------KIMRRFGIQKRQD 43 (76)
Q Consensus 5 LK~HEqK--LLKKVdFl~WK~d~n~RE~-------~vmrRY~iq~ReD 43 (76)
||.||+. .+|+..--. +..++..|+ .||.+|.+.++.|
T Consensus 33 LKihdkeEl~wK~lKaeg-~D~dG~kEa~LR~kl~~Im~~YgL~g~kd 79 (82)
T d1ov2a_ 33 LKIQERDELAWKKLKLDG-LDEDGEKEARLIRNLNVILAKYGLDGKKD 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHT-SCSSCHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHhhHHHHHHHHHHHhc-CCccchHHHHHHHHHHHHHHHhCCCcccc
Confidence 6788874 233333222 223456664 5788999988766
No 4
>d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.32 E-value=11 Score=25.19 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=9.9
Q ss_pred hhcccceecccC
Q psy13912 14 KKVDFISWEADN 25 (76)
Q Consensus 14 KKVdFl~WK~d~ 25 (76)
-+|||..||.-+
T Consensus 44 t~v~f~~Wk~~~ 55 (166)
T d1eera_ 44 TKVNFYAWKRME 55 (166)
T ss_dssp CCBCHHHHTTSC
T ss_pred ceecHHHHHhhh
Confidence 489999999854
No 5
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.68 E-value=12 Score=24.57 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=9.6
Q ss_pred hhcccceecccC
Q psy13912 14 KKVDFISWEADN 25 (76)
Q Consensus 14 KKVdFl~WK~d~ 25 (76)
-+|||..||.-+
T Consensus 38 t~v~f~~Wk~~~ 49 (145)
T d1v7mv_ 38 VDFSLGEWKTQM 49 (145)
T ss_dssp CCCCCHHHHHSC
T ss_pred ceeeHHHHHhcc
Confidence 479999999853
No 6
>d1nlxa_ a.24.17.1 (A:) Pollen allergen Phl P 6 {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=14.86 E-value=20 Score=22.27 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=8.3
Q ss_pred HHhhhhhhcc
Q psy13912 8 HEQKLLKKVD 17 (76)
Q Consensus 8 HEqKLLKKVd 17 (76)
+||||+.|||
T Consensus 4 ~E~kliekin 13 (104)
T d1nlxa_ 4 EEQKLIEDVN 13 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6888888887
No 7
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=14.52 E-value=49 Score=18.63 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=30.6
Q ss_pred hHHhhhhhhcccceecccCc------hhHHHHHHhhcCCCChhhHH
Q psy13912 7 YHEQKLLKKVDFISWEADNN------LHEVKIMRRFGIQKRQDYTT 46 (76)
Q Consensus 7 ~HEqKLLKKVdFl~WK~d~n------~RE~~vmrRY~iq~ReDY~k 46 (76)
|--|.|||+..++-|=.|.- .-|.+-+.++++-++++|..
T Consensus 5 YDVqQLLK~fG~~IY~GdR~~DielM~~El~~Ly~~~lid~~~y~~ 50 (62)
T d2nn4a1 5 YDVQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWAR 50 (62)
T ss_dssp HHHHHHHHTTTCCCCCSCHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHCCEeEEeCchHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44688999999999877642 23566788899999998854
No 8
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=13.65 E-value=22 Score=17.72 Aligned_cols=7 Identities=57% Similarity=0.914 Sum_probs=5.7
Q ss_pred cchhHHh
Q psy13912 4 KLKYHEQ 10 (76)
Q Consensus 4 kLK~HEq 10 (76)
+||.||+
T Consensus 20 ~lkrhek 26 (29)
T d2j7ja2 20 RLKRHEK 26 (29)
T ss_dssp HHHHHHH
T ss_pred HHhhhhh
Confidence 6899986
No 9
>d1zbxb1 d.339.1.1 (B:485-613) Regulatory protein SIR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.96 E-value=32 Score=21.93 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=18.7
Q ss_pred cceecccCchhHHHHHHhhcCCCChhhHHh
Q psy13912 18 FISWEADNNLHEVKIMRRFGIQKRQDYTTA 47 (76)
Q Consensus 18 Fl~WK~d~n~RE~~vmrRY~iq~ReDY~kY 47 (76)
+.+|-..-|-.|.+-+..|.++|..++.++
T Consensus 30 s~~~~~~l~~~er~~I~~~~L~dw~~~kk~ 59 (129)
T d1zbxb1 30 DPRLLTLLKDHQRAMIDQMNLVKWNDFKKY 59 (129)
T ss_dssp CTHHHHHSCHHHHHHHHTSCCCCGGGGTTC
T ss_pred CHhHhcCccHHHHHHHhhcCcccHHHhccc
Confidence 444555556666666677777776676543
No 10
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.10 E-value=38 Score=17.96 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=6.8
Q ss_pred Hhhhhhhcc
Q psy13912 9 EQKLLKKVD 17 (76)
Q Consensus 9 EqKLLKKVd 17 (76)
-|+||+|.+
T Consensus 20 Nq~LL~KH~ 28 (41)
T d2cp8a1 20 NLRLLKKHN 28 (41)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHcc
Confidence 378888876
Done!