RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13912
         (76 letters)



>gnl|CDD|184523 PRK14125, PRK14125, cell division suppressor protein YneA;
          Provisional.
          Length = 103

 Score = 28.1 bits (63), Expect = 0.19
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 6  KYHEQKLLKKVDFISWEADNN 26
          +Y  +  + K +FI W  D N
Sbjct: 53 QYAGKHHMAKNEFIEWVEDVN 73


>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine
          Kinase, MAPK/MAK/MRK Overlapping Kinase.
          Serine/Threonine Kinases (STKs), MAPK/MAK/MRK
          Overlapping Kinase (MOK) subfamily, catalytic (c)
          domain. STKs catalyze the transfer of the
          gamma-phosphoryl group from ATP to serine/threonine
          residues on protein substrates. The MOK subfamily is
          part of a larger superfamily that includes the
          catalytic domains of other protein STKs, protein
          tyrosine kinases, RIO kinases, aminoglycoside
          phosphotransferase, choline kinase, and
          phosphoinositide 3-kinase. MOK, also called Renal tumor
          antigen 1 (RAGE-1), is widely expressed and is enriched
          in testis, kidney, lung, and brain. It is expressed in
          approximately 50% of renal cell carcinomas (RCC) and is
          a potential target for immunotherapy. MOK is stabilized
          by its association with the HSP90 molecular chaperone.
          It is induced by the transcription factor Cdx2 and may
          be involved in regulating intestinal epithelial
          development and differentiation.
          Length = 282

 Score = 27.2 bits (61), Expect = 0.77
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 6  KYHEQKLLKKVDFISWEADNNLHEVKIMRR 35
          KY+  K +KK  F S E  NNL E++ +RR
Sbjct: 25 KYYAIKCMKK-HFKSLEQVNNLREIQALRR 53


>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
          [Translation, ribosomal structure and biogenesis].
          Length = 205

 Score = 26.1 bits (58), Expect = 1.6
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 1  MVRKLKYHEQKLLKKVDFISWEADNNLHEVKIMRRFGIQKR 41
          M R     ++KL +++ F  W  +    E K+  + G   +
Sbjct: 1  MARYPG-PKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQ 40


>gnl|CDD|227342 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein
           [Cell envelope biogenesis, outer membrane].
          Length = 797

 Score = 26.1 bits (58), Expect = 1.9
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 26  NLHEVKIMRRFGIQKRQDY-TTAGFKPNPVPPELTVLL 62
           NL  V+++   G+    +Y    GF  + +PP L++ L
Sbjct: 520 NLVAVRLLDAVGVDYAAEYIKRFGFYTDELPPVLSMAL 557


>gnl|CDD|227105 COG4764, COG4764, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 197

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 25 NNLHE--VKIMRRFG----IQKRQDYTTAGFKPNPVPPELTVLLHF 64
          NN     ++  R +G    +     YT +GFK N  PP  T LL F
Sbjct: 42 NNWQRAALRTEREYGVPVPVLMATIYTESGFKHNARPPR-TKLLGF 86


>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain. 
          Length = 260

 Score = 25.3 bits (56), Expect = 3.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 11 KLLKKVDFISWEADNNLHEVKIMRRFG 37
          K+LKK    S +      E++I+RR  
Sbjct: 30 KILKKRSEKSKKDQTARREIRILRRLS 56


>gnl|CDD|238914 cd01939, Ketohexokinase, Ketohexokinase (fructokinase, KHK)
           catalyzes the phosphorylation of fructose to
           fructose-1-phosphate (F1P), the first step in the
           metabolism of dietary fructose.  KHK can also
           phosphorylate several other furanose sugars.  It is
           found in higher eukaryotes where it is believed to
           function as a dimer and requires K(+) and ATP to be
           active.  In humans, hepatic KHK deficiency causes
           fructosuria, a benign inborn error of metabolism.
          Length = 290

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 5/28 (17%), Positives = 13/28 (46%)

Query: 9   EQKLLKKVDFISWEADNNLHEVKIMRRF 36
            +  L +  +I +E  N    +++M+  
Sbjct: 121 SKIDLTQYGWIHFEGRNPDETLRMMQHI 148


>gnl|CDD|153401 cd08032, LARP_7, La RNA-binding domain of La-related protein 7.
          LARP7 is a component of the 7SK snRNP, a key factor in
          the regulation of RNA polymerase II transcription. 7SK
          functionality is dependent on the presence of LARP7,
          which is thought to stabilize the 7SK RNA by
          interacting with its 3' end. The release of 7SK RNA
          from P-TEFb/HEXIM/7SK complexes activates the
          cyclin-dependent kinase P-TEFb, which in turn
          phosphorylates the C-terminal domain of RNA pol II and
          mediates a transition into productive transcription
          elongation.
          Length = 82

 Score = 24.1 bits (52), Expect = 5.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 14 KKVDFISWEADNNLHEVKIMRRFGIQKRQDY 44
          K+VDF  W  D NLH+ + +R    + R  Y
Sbjct: 11 KQVDF--WFGDVNLHKDRFLREQIEKSRDGY 39


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,039,228
Number of extensions: 308175
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 10
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)