BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13914
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RF33|DSCR3_PONAB Down syndrome critical region protein 3 homolog OS=Pongo abelii
GN=DSCR3 PE=2 SV=1
Length = 297
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 1 IVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPR 60
+V+E +E I+SVELQLVRVETCGCAEGY+RDATEIQNIQI +G+V G+ +PIYMVFPR
Sbjct: 197 LVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPR 256
Query: 61 LFTCPTLITSNFKIGERL--------DHYTTKNL 86
LFTCPTL T+NFK+ + DH T+N
Sbjct: 257 LFTCPTLETTNFKVEFEVNIVVLLHPDHLITENF 290
>sp|O14972|DSCR3_HUMAN Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3
PE=2 SV=1
Length = 297
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 1 IVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPR 60
+V+E +E I+SVELQLVRVETCGCAEGY+RDATEIQNIQI +G+V G+ +PIYMVFPR
Sbjct: 197 LVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPR 256
Query: 61 LFTCPTLITSNFKIGERL--------DHYTTKNL 86
LFTCPTL T+NFK+ + DH T+N
Sbjct: 257 LFTCPTLETTNFKVEFEVNIVVLLHPDHLITENF 290
>sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 homolog OS=Mus musculus
GN=Dscr3 PE=2 SV=1
Length = 297
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 1 IVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPR 60
+V+E ++ I+S+ELQLVRVETCGCAEGY+RDATEIQNIQI +G++ + +P+YMVFPR
Sbjct: 197 LVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPR 256
Query: 61 LFTCPTLITSNFKIGERL--------DHYTTKNL 86
LFTCPTL T+NFK+ + DH T+N
Sbjct: 257 LFTCPTLETTNFKVEFEVNVVVLLHADHLITENF 290
>sp|Q54DI8|DSCR3_DICDI Down syndrome critical region protein 3 homolog OS=Dictyostelium
discoideum GN=DDB_G0292212 PE=3 SV=1
Length = 304
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 58/74 (78%)
Query: 1 IVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPR 60
++IE + IKSVELQLVRVETCGCA+GY+R+ TEIQNIQI +G+++ IP+YMVFPR
Sbjct: 205 MIIESADTVIKSVELQLVRVETCGCADGYAREVTEIQNIQIADGDIWRNFKIPLYMVFPR 264
Query: 61 LFTCPTLITSNFKI 74
LFTC + FKI
Sbjct: 265 LFTCISTAGKTFKI 278
>sp|A7S710|DRE2_NEMVE Anamorsin homolog OS=Nematostella vectensis GN=v1g167244 PE=3 SV=1
Length = 282
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 22 TCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTLITSNFKIGERLDHY 81
TCG AE + DATE +++ G+ + G R TCP L FK GE++
Sbjct: 222 TCGLAEQENGDATEKKSVTSSCGSCYLGDAF-------RCSTCPYLGMPAFKPGEKI-AL 273
Query: 82 TTKNLK 87
T + LK
Sbjct: 274 TDRQLK 279
>sp|Q10243|VPS26_SCHPO Vacuolar protein sorting-associated protein 26
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps26 PE=3 SV=1
Length = 298
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTL 67
+ ++ +E+ ++R ET G + ++ I QI +GN G IP+ M PT
Sbjct: 198 IKVQRMEVSIIRRETIGTSPNQYSNSETITRFQIMDGNPNRGETIPLRMFLNGYALTPTF 257
Query: 68 ITSNFKIGER 77
N K R
Sbjct: 258 RDVNKKFSVR 267
>sp|Q9RXT4|PURL_DEIRA Phosphoribosylformylglycinamidine synthase 2 OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=purL PE=3 SV=1
Length = 747
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 26 AEGYSRDATEIQNIQIGEGNVFTGIPIP--IYMVFPRLFTCPTLITSNFKIGERLDHYTT 83
A Y+R+ E +I+ +G+P+P + V L + PT I S I ER DH
Sbjct: 369 APKYTREGVESADIRAARERDLSGVPLPGDLGAVLLELLSHPT-IASKRPIFERYDHQVM 427
Query: 84 KN 85
N
Sbjct: 428 TN 429
>sp|Q8I4T1|VPS26_PLAF7 Vacuolar protein sorting-associated protein 26 OS=Plasmodium
falciparum (isolate 3D7) GN=PFL2415w PE=3 SV=1
Length = 297
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPT 66
+ IK +EL ++++ET G + Y+ + + +I +G+ IP+ + PT
Sbjct: 199 IKIKHMELDIIKMETSGVGKNYTTETVTLSKFEIMDGSPIKSECIPVRLYLSGFDLTPT 257
>sp|O75436|VP26A_HUMAN Vacuolar protein sorting-associated protein 26A OS=Homo sapiens
GN=VPS26A PE=1 SV=2
Length = 327
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTL 67
+ I+ +ELQL++ E G + + I +I +G G IPI + PT+
Sbjct: 202 IKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTM 261
Query: 68 ITSNFKIGER 77
N K R
Sbjct: 262 RDVNKKFSVR 271
>sp|Q0VD53|VP26A_BOVIN Vacuolar protein sorting-associated protein 26A OS=Bos taurus
GN=VPS26A PE=2 SV=1
Length = 327
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTL 67
+ I+ +ELQL++ E G + + I +I +G G IPI + PT+
Sbjct: 202 IKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTM 261
Query: 68 ITSNFKIGER 77
N K R
Sbjct: 262 RDVNKKFSVR 271
>sp|Q6AY86|VP26A_RAT Vacuolar protein sorting-associated protein 26A OS=Rattus
norvegicus GN=Vps26a PE=2 SV=1
Length = 327
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTL 67
+ I+ +ELQL++ E G + + I +I +G G IPI + PT+
Sbjct: 202 IKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTM 261
Query: 68 ITSNFKIGER 77
N K R
Sbjct: 262 RDVNKKFSVR 271
>sp|P40336|VP26A_MOUSE Vacuolar protein sorting-associated protein 26A OS=Mus musculus
GN=Vps26a PE=2 SV=1
Length = 327
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTL 67
+ I+ +ELQL++ E G + + I +I +G G IPI + PT+
Sbjct: 202 IKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTM 261
Query: 68 ITSNFKIGER 77
N K R
Sbjct: 262 RDVNKKFSVR 271
>sp|Q6TNP8|VP26A_DANRE Vacuolar protein sorting-associated protein 26A OS=Danio rerio
GN=vps26a PE=2 SV=1
Length = 327
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTL 67
+ I+ +ELQL++ E G + + + +I +G G IPI + PT+
Sbjct: 202 IKIQHMELQLIKKEMTGIGPSTTTETETVAKYEIMDGAPVKGESIPIRLFLAGYDLTPTM 261
Query: 68 ITSNFKIGER 77
N K R
Sbjct: 262 RDVNKKFSVR 271
>sp|Q28HT6|VP26A_XENTR Vacuolar protein sorting-associated protein 26A OS=Xenopus
tropicalis GN=vps26a PE=2 SV=1
Length = 326
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCPTL 67
+ I+ +ELQL++ E G + + + +I +G G IPI + PT+
Sbjct: 202 IKIQHMELQLIKKEITGIGPSTTTETETVAKYEIMDGAPVKGESIPIRLFLAGYDPTPTM 261
Query: 68 ITSNFKIGER 77
N K R
Sbjct: 262 RDVNKKFSVR 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,722,172
Number of Sequences: 539616
Number of extensions: 1005938
Number of successful extensions: 1635
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1620
Number of HSP's gapped (non-prelim): 17
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)