Query psy13914
Match_columns 87
No_of_seqs 57 out of 59
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 23:42:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ccva_ g.22.1.1 (A:) Chymotry 54.0 3.3 0.00024 22.8 1.8 16 18-33 31-46 (56)
2 d1dx5i2 g.3.11.1 (I:388-422) T 43.0 5.2 0.00038 21.3 1.4 12 22-33 19-30 (35)
3 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 40.8 4.3 0.00032 22.6 0.9 15 18-32 33-47 (60)
4 d2fh1a3 d.109.1.1 (A:629-741) 38.5 6.1 0.00044 23.7 1.4 17 59-76 12-28 (113)
5 d2h9ec1 g.22.1.1 (C:6-83) Anti 34.1 6.2 0.00045 22.7 0.9 16 18-33 40-55 (78)
6 d1efca1 b.43.3.1 (A:205-296) E 32.1 4.2 0.00031 24.2 -0.1 40 7-46 48-87 (92)
7 d1tpna_ g.27.1.1 (A:) Tissue-t 31.1 6.7 0.00049 22.3 0.7 14 18-31 29-42 (50)
8 d2c78a1 b.43.3.1 (A:213-312) E 29.9 4.8 0.00035 24.0 -0.2 24 7-30 52-75 (100)
9 d1d2ea1 b.43.3.1 (A:251-348) E 25.5 8 0.00058 23.0 0.3 39 8-46 51-89 (98)
10 d1twfj_ a.4.11.1 (J:) RNA poly 24.9 8.3 0.00061 22.6 0.3 17 56-72 1-18 (65)
11 d1f60a1 b.43.3.1 (A:241-334) E 24.1 3.6 0.00026 24.6 -1.6 41 7-47 44-84 (94)
12 d1tg7a3 b.18.1.27 (A:849-1011) 23.7 42 0.0031 22.5 3.9 33 42-78 51-83 (163)
No 1
>d1ccva_ g.22.1.1 (A:) Chymotrypsin inhibitor AMCI {Honeybee (Apis mellifera) [TaxId: 7460]}
Probab=54.03 E-value=3.3 Score=22.81 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=14.0
Q ss_pred EEEeeeeeCCceeecc
Q psy13914 18 VRVETCGCAEGYSRDA 33 (87)
Q Consensus 18 vRVEt~~~~eg~~rea 33 (87)
..||.|.|.+||+++.
T Consensus 31 ~C~~GC~C~~G~v~~~ 46 (56)
T d1ccva_ 31 QCRIGCQCQEGFLRNG 46 (56)
T ss_dssp SCEEEEEECTTCEEET
T ss_pred CCCCCCCCCCCeeEcC
Confidence 4689999999999985
No 2
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.03 E-value=5.2 Score=21.34 Aligned_cols=12 Identities=50% Similarity=1.176 Sum_probs=9.8
Q ss_pred eeeeCCceeecc
Q psy13914 22 TCGCAEGYSRDA 33 (87)
Q Consensus 22 t~~~~eg~~rea 33 (87)
.|.|+|||.-|.
T Consensus 19 ~C~CPeGyIlde 30 (35)
T d1dx5i2 19 SCECPEGYILDD 30 (35)
T ss_dssp CEECCTTEEEET
T ss_pred cccCCCceEecc
Confidence 589999999663
No 3
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=40.82 E-value=4.3 Score=22.60 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.8
Q ss_pred EEEeeeeeCCceeec
Q psy13914 18 VRVETCGCAEGYSRD 32 (87)
Q Consensus 18 vRVEt~~~~eg~~re 32 (87)
.-||.|.|.+||+++
T Consensus 33 ~C~eGC~Cp~G~vl~ 47 (60)
T d1hx2a_ 33 KCNQRCGCISGTVLK 47 (60)
T ss_dssp CCCSEEEECTTCEES
T ss_pred CCCccCCCCCCEeEc
Confidence 358999999999975
No 4
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.52 E-value=6.1 Score=23.71 Aligned_cols=17 Identities=47% Similarity=0.841 Sum_probs=12.4
Q ss_pred eeeeccCccCccceEEEE
Q psy13914 59 PRLFTCPTLITSNFKIGE 76 (87)
Q Consensus 59 PRlftCPt~~t~~FkveF 76 (87)
||||.|. ...+.|+++-
T Consensus 12 prLf~~~-~~~g~~~~~e 28 (113)
T d2fh1a3 12 PRLFACS-NKIGRFVIEE 28 (113)
T ss_dssp CEEEEEE-CTTSSCEEEE
T ss_pred CEEEEEE-cCCCCEEEEE
Confidence 9999995 4456677764
No 5
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=34.12 E-value=6.2 Score=22.67 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=9.6
Q ss_pred EEEeeeeeCCceeecc
Q psy13914 18 VRVETCGCAEGYSRDA 33 (87)
Q Consensus 18 vRVEt~~~~eg~~rea 33 (87)
.-||.|.|.+|++++.
T Consensus 40 ~CveGC~Cp~G~v~~~ 55 (78)
T d2h9ec1 40 VCHQDCVCEEGFYRNK 55 (78)
T ss_dssp -----CEECSSCEECT
T ss_pred CCCCcCCCCCCeeEcC
Confidence 4699999999999853
No 6
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]}
Probab=32.14 E-value=4.2 Score=24.20 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=25.4
Q ss_pred CCCceeEEEEEEEEeeeeeCCceeecccceeeEEEeeCcc
Q psy13914 7 ELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNV 46 (87)
Q Consensus 7 ~~pIkSIelQLvRVEt~~~~eg~~reaTEIQniQIadGdV 46 (87)
.+.||||+.+=..++.+..++..+--..-|...+|.-|||
T Consensus 48 ~~~vksi~~~~~~~~~a~aG~~v~l~L~gi~~~~i~rG~v 87 (92)
T d1efca1 48 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQV 87 (92)
T ss_dssp EEEEEEEEETTEEESEEETTCEEEEEETTCCGGGCCTTCE
T ss_pred EEEEEEEEECCcCccccCCCCEEEEEEcCCCHHHcCCccE
Confidence 3569999999889999888886543333333333444443
No 7
>d1tpna_ g.27.1.1 (A:) Tissue-type plasminogen activator, t-PA {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.13 E-value=6.7 Score=22.31 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=12.0
Q ss_pred EEEeeeeeCCceee
Q psy13914 18 VRVETCGCAEGYSR 31 (87)
Q Consensus 18 vRVEt~~~~eg~~r 31 (87)
-|||-|-|+.|.++
T Consensus 29 nrvEyCrC~~G~~~ 42 (50)
T d1tpna_ 29 NRVEYCWCNSGRAQ 42 (50)
T ss_dssp SCCEEEECSSSSCE
T ss_pred CceEEEEECCCCcc
Confidence 37999999999775
No 8
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]}
Probab=29.85 E-value=4.8 Score=24.03 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=19.1
Q ss_pred CCCceeEEEEEEEEeeeeeCCcee
Q psy13914 7 ELPIKSVELQLVRVETCGCAEGYS 30 (87)
Q Consensus 7 ~~pIkSIelQLvRVEt~~~~eg~~ 30 (87)
.+.||||+.+=..++.+..++..+
T Consensus 52 ~~~V~sI~~~~~~~~~a~aG~~v~ 75 (100)
T d2c78a1 52 KTVVTGVEMHRKTLQEGIAGDNVG 75 (100)
T ss_dssp EEEEEEEEETTEEESEEETTCEEE
T ss_pred EEEEEEEEECCccccEEeCCCeEE
Confidence 345899999988999888888644
No 9
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=25.45 E-value=8 Score=22.97 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=25.2
Q ss_pred CCceeEEEEEEEEeeeeeCCceeecccceeeEEEeeCcc
Q psy13914 8 LPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNV 46 (87)
Q Consensus 8 ~pIkSIelQLvRVEt~~~~eg~~reaTEIQniQIadGdV 46 (87)
+.+|||+.+-..++.+.+++..+--..-|..=+|.-|+|
T Consensus 51 ~~V~si~~~~~~~~~a~aG~~v~l~l~gi~~~~i~rG~v 89 (98)
T d1d2ea1 51 TVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLV 89 (98)
T ss_dssp EEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred EEEEEEEEeccEeccCCCCCEEEEEEcCCCHHHccCccE
Confidence 458999999999999998886543333333223334443
No 10
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.90 E-value=8.3 Score=22.61 Aligned_cols=17 Identities=29% Similarity=0.892 Sum_probs=12.3
Q ss_pred EEee-eeeccCccCccce
Q psy13914 56 MVFP-RLFTCPTLITSNF 72 (87)
Q Consensus 56 mvfP-RlftCPt~~t~~F 72 (87)
|+.| |=|||-.+.+..+
T Consensus 1 MiIPVRCFTCgkvi~~k~ 18 (65)
T d1twfj_ 1 MIVPVRCFSCGKVVGDKW 18 (65)
T ss_dssp CCCCSBCTTTCCBCTTCH
T ss_pred CCCCcccCCCCcChHHHH
Confidence 4444 8899999887654
No 11
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.06 E-value=3.6 Score=24.56 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=25.2
Q ss_pred CCCceeEEEEEEEEeeeeeCCceeecccceeeEEEeeCccc
Q psy13914 7 ELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVF 47 (87)
Q Consensus 7 ~~pIkSIelQLvRVEt~~~~eg~~reaTEIQniQIadGdVc 47 (87)
.+.||||+.+-..++.+..++..+--.+.+.--+|.-|||+
T Consensus 44 ~~~VksI~~~~~~~~~a~aG~~v~l~l~~i~~~~i~rG~vl 84 (94)
T d1f60a1 44 TTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVC 84 (94)
T ss_dssp EEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTCEE
T ss_pred eEEEEEEEEcCcCcCEecCCCeEEEEEeCccHHhcCCCCEE
Confidence 35689999888888887777765533333333334445544
No 12
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]}
Probab=23.68 E-value=42 Score=22.52 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=26.7
Q ss_pred eeCcccCCCccCeEEEeeeeeccCccCccceEEEEEe
Q psy13914 42 GEGNVFTGIPIPIYMVFPRLFTCPTLITSNFKIGERL 78 (87)
Q Consensus 42 adGdVcr~l~IPiymvfPRlftCPt~~t~~FkveFev 78 (87)
-+-|+.+++++||.+.| +=++..+..+++..=|
T Consensus 51 f~L~lP~g~Dv~l~f~~----~~~~~~~~~yR~~lfV 83 (163)
T d1tg7a3 51 FDLDLPSGYDIPLYFNF----GNSTSTPAAYRVQLYV 83 (163)
T ss_dssp EECCCCTTEECCEEEEE----CCCCSSCCCEEEEEEE
T ss_pred EecCCCCCCcceEEEEE----cCCCCCccceEEEEEE
Confidence 47899999999999988 3455566779998877
Done!