RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13914
         (87 letters)



>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26.
           Vacuolar protein sorting-associated protein (Vps) 26 is
           one of around 50 proteins involved in protein
           trafficking. In particular, Vps26 assembles into a
           retromer complex with at least four other proteins Vps5,
           Vps17, Vps29 and Vps35. This family also contains Down
           syndrome critical region 3/A.
          Length = 275

 Score = 80.2 bits (198), Expect = 7e-20
 Identities = 20/68 (29%), Positives = 30/68 (44%)

Query: 6   TELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPRLFTCP 65
             + IK +ELQL+R E+ G       ++  I   +I +G    G  IPI +        P
Sbjct: 192 VRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPVRGESIPIRLFLAGYDLTP 251

Query: 66  TLITSNFK 73
           T+   N K
Sbjct: 252 TMRDVNKK 259


>gnl|CDD|225911 COG3376, HoxN, High-affinity nickel permease [Inorganic ion
           transport and metabolism].
          Length = 342

 Score = 31.5 bits (72), Expect = 0.033
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 33  ATEIQNIQIGEGNVFTGIPIPIYMVFPRLFT 63
           ATEI  + I   +   GIPI   +VFP LF 
Sbjct: 210 ATEIALLAISAASAAIGIPIYAILVFPILFA 240


>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
           Provisional.
          Length = 601

 Score = 26.4 bits (58), Expect = 1.9
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)

Query: 31  RDATEIQNIQIGEGN-----VFTGIPIPIYMV 57
           +DA E   + +  GN      + G PIP  +V
Sbjct: 462 KDACEFSGVPVASGNASLYNTYQGKPIPPTLV 493


>gnl|CDD|232991 TIGR00473, pssA, CDP-diacylglycerol--serine
           O-phosphatidyltransferase.  This enzyme,
           CDP-diacylglycerol--serine O-phosphatidyltransferase, is
           involved in phospholipid biosynthesis catalyzing the
           reaction CDP-diacylglycerol + L-serine = CMP +
           L-1-phosphatidylserine. Members of this family do not
           bear any significant sequence similarity to the
           corresponding E.coli protein [Fatty acid and
           phospholipid metabolism, Biosynthesis].
          Length = 151

 Score = 25.1 bits (55), Expect = 5.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 38  NIQIGEGNVFTGIPIP 53
           N+   +   F G+PIP
Sbjct: 100 NVLNVKLPSFIGLPIP 115


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,200,451
Number of extensions: 322379
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)