RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13914
         (87 letters)



>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport;
           HET: CAF; 2.10A {Homo sapiens}
          Length = 341

 Score = 89.7 bits (222), Expect = 3e-23
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 1   IVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPR 60
           I      + I+ +ELQL++ E  G     + +   I   +I +G    G  IPI +    
Sbjct: 197 IYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAG 256

Query: 61  LFTCPTLITSNFK 73
               PT+   N K
Sbjct: 257 YDPTPTMRDVNKK 269


>2r51_A Vacuolar protein sorting-associated protein 26B; retromer,
           fibronectin III, arrestin domain, membrane,
           phosphorylation, protein transport; 2.10A {Mus musculus}
           PDB: 3lh9_A 3lh8_A 3lha_A
          Length = 340

 Score = 88.2 bits (218), Expect = 8e-23
 Identities = 18/73 (24%), Positives = 29/73 (39%)

Query: 1   IVIEQTELPIKSVELQLVRVETCGCAEGYSRDATEIQNIQIGEGNVFTGIPIPIYMVFPR 60
           I      + IK +E+ +++ ET G       +   I   +I +G    G  IPI +    
Sbjct: 197 IYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAG 256

Query: 61  LFTCPTLITSNFK 73
               PT+   N K
Sbjct: 257 YELTPTMRDINKK 269


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.17
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 62  FTCPTLITSNFK-IGERLDHYTTKNL 86
            +C  L+T+ FK + + L   TT ++
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHI 289


>2qgz_A Helicase loader, putative primosome component; structural genomics,
           PSI-2, protein structure initiative; 2.40A
           {Streptococcus pyogenes serotype M3}
          Length = 308

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 65  PTLITSNFKIGERLDHYTTKN 85
           PT  TSN+   +    + T  
Sbjct: 250 PTFFTSNYSFADLERKWATIK 270


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,245,324
Number of extensions: 57628
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 7
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)