RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13914
         (87 letters)



>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
           actinomycetemcomitans [TaxId: 714]}
          Length = 344

 Score = 24.8 bits (53), Expect = 1.6
 Identities = 1/33 (3%), Positives = 6/33 (18%), Gaps = 2/33 (6%)

Query: 32  DATEIQNIQIGEGNVFT--GIPIPIYMVFPRLF 62
                  I     +++      +    +     
Sbjct: 300 RVQNTHEIAGAALSIWGEDAKALKDETIQKNTK 332


>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 232

 Score = 22.9 bits (49), Expect = 6.1
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 22  TCGCAEGYSRDATEIQNIQIGEGN-VFTGIPIPIYMVF 58
            CG  EG      +I +++I  G+ + +G  I    V 
Sbjct: 110 ICGRYEGVDERVKKIVDMEISLGDFILSGGEIVALAVI 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 308,793
Number of extensions: 11349
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)