Query psy13917
Match_columns 135
No_of_seqs 104 out of 106
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 23:45:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3705|consensus 100.0 2E-50 4.4E-55 349.3 3.9 127 2-128 161-287 (580)
2 PF10250 O-FucT: GDP-fucose pr 93.2 0.063 1.4E-06 44.2 2.4 31 62-93 6-36 (351)
3 PF05830 NodZ: Nodulation prot 89.8 0.41 9E-06 41.3 3.8 61 55-117 3-73 (321)
4 PF03254 XG_FTase: Xyloglucan 80.6 9.7 0.00021 34.6 8.0 43 46-93 106-148 (476)
5 COG3657 Uncharacterized protei 75.2 3.6 7.8E-05 30.1 3.0 45 17-61 6-53 (100)
6 PF15174 PRNT: Prion-related p 59.3 9.4 0.0002 24.5 2.2 23 37-59 25-51 (51)
7 PRK10404 hypothetical protein; 53.2 25 0.00054 25.3 3.9 38 7-46 14-51 (101)
8 PRK10132 hypothetical protein; 35.3 66 0.0014 23.5 3.8 37 8-46 22-58 (108)
9 COG0374 HyaB Ni,Fe-hydrogenase 31.3 47 0.001 30.8 3.0 51 1-51 365-431 (545)
10 KOG3849|consensus 28.5 40 0.00088 29.4 2.0 38 53-92 28-66 (386)
11 COG4575 ElaB Uncharacterized c 24.3 1.4E+02 0.0031 21.9 4.0 37 8-46 18-54 (104)
12 PF04375 HemX: HemX; InterPro 21.2 2E+02 0.0043 24.8 4.9 28 22-49 123-150 (372)
13 PF07796 DUF1638: Protein of u 20.8 20 0.00042 27.2 -1.2 73 30-108 10-96 (166)
No 1
>KOG3705|consensus
Probab=100.00 E-value=2e-50 Score=349.27 Aligned_cols=127 Identities=60% Similarity=1.091 Sum_probs=124.7
Q ss_pred cchHHHHhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHHHHHHHHHHHH
Q psy13917 2 EIAPVFRSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVA 81 (135)
Q Consensus 2 ~~~~~~~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~Cl~vA 81 (135)
|.++|+||||.|++.|.+.||+++||.|++.+|+++||+||+++|||+||++||||+|+++++||||||+||++|||++|
T Consensus 161 ~~~~h~rSlm~d~~~l~q~dG~e~wR~Kea~dlt~lvqrri~~LQNPkdCs~AkkLVCnlnKgCGyGCQLHHVvYCfi~A 240 (580)
T KOG3705|consen 161 ETAEHMRSLMGDSAQLEQLDGSEEWRFKEATDLTQLVQRRIEKLQNPKDCSEAKKLVCNLNKGCGYGCQLHHVVYCFITA 240 (580)
T ss_pred hhHHHHHHHHhHHHHHHhccCcHHHHHhHHhHHHHHHHHHHHHhcChHhhHHHhhheeeccCCcccccceeeeeEeeeee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEecCCCcccCCCcccccccCCCCcCCCCCCCCCccCCCC
Q psy13917 82 YATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNSGWPGKG 128 (135)
Q Consensus 82 ~~t~Rtlil~~~~~~Y~~~gw~~~F~P~S~~C~~~~~~~~~~W~~~~ 128 (135)
|+|.||||+++.+|+|+.+||+++|+|+|+||.++.+.++..|||+.
T Consensus 241 yaTqRtliLks~gWrY~~gGWe~VF~pvS~~c~D~~~~nT~~wpg~~ 287 (580)
T KOG3705|consen 241 YATQRTLILKSDGWRYSSGGWESVFKPVSKCCFDEAVGNTEAWPGAE 287 (580)
T ss_pred eecceEEEEecCCceecCCChhhhhhhhhhcccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999976
No 2
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=93.21 E-value=0.063 Score=44.23 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=25.3
Q ss_pred CCCcccchHHHHHHHHHHHHHhcCcEEEEecC
Q psy13917 62 NKGCGYGCQLHHVVYCFIVAYATRRTLILDSK 93 (135)
Q Consensus 62 ~~~CGfGC~~H~~~~Cl~vA~~t~Rtlil~~~ 93 (135)
..+ |||-|.-++...+.+|..+|||||+-.-
T Consensus 6 ~~G-GfnNQr~~~~~a~~~A~~LnRTLVLPp~ 36 (351)
T PF10250_consen 6 CMG-GFNNQRMGFENAVVFAKALNRTLVLPPF 36 (351)
T ss_dssp -SS-SHHHHHHHHHHHHHHHHHHT-EEE--EE
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhCCEEEcCCc
Confidence 457 9999999999999999999999999864
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=89.84 E-value=0.41 Score=41.27 Aligned_cols=61 Identities=26% Similarity=0.393 Sum_probs=40.7
Q ss_pred CeeeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEecCCCcccC----CCcccccccCC---C---CcCCCC
Q psy13917 55 RKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSKEWSYSR----GGWEEVFQPVS---K---TCTSPE 117 (135)
Q Consensus 55 kkL~c~~~~~CGfGC~~H~~~~Cl~vA~~t~Rtlil~~~~~~Y~~----~gw~~~F~P~S---~---~C~~~~ 117 (135)
++++|. ..-|||-.+-.++-|-.+|=.|||+|++|..+..|.. +-+.-+|+|+- + .|.++.
T Consensus 3 r~~~~r--~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f~n~f~~ffepv~~i~~~~~~~~d~i 73 (321)
T PF05830_consen 3 RFVVSR--RRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPFTNAFPVFFEPVEDIAGVRVICDDRI 73 (321)
T ss_dssp -EEEEE----S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTTSBSHHHHB---SEETTEEEE-SGGG
T ss_pred ceEEEe--ccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcccccCCcccchhhhhcCceeEecchh
Confidence 577777 4779999999999999999999999999999988853 45777899954 2 566554
No 4
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=80.56 E-value=9.7 Score=34.60 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=36.8
Q ss_pred cCCCCccccCeeeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEecC
Q psy13917 46 QNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSK 93 (135)
Q Consensus 46 QNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~Cl~vA~~t~Rtlil~~~ 93 (135)
..+.+| |+|+.. ..-|+|-.|=-++--|..|+-|+|||+++..
T Consensus 106 ~~~~~C---kYvVw~--~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~ 148 (476)
T PF03254_consen 106 DGTSEC---KYVVWI--PYSGLGNRMLSLASAFLYALLTNRVLLVDPG 148 (476)
T ss_pred CCCCCC---cEEEEe--cCCchHHHHHHHHHHHHHHHHhCcEEEEecC
Confidence 456666 678875 3679999999999999999999999999984
No 5
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.20 E-value=3.6 Score=30.08 Aligned_cols=45 Identities=31% Similarity=0.409 Sum_probs=32.3
Q ss_pred HhccCChhHHHHHHhH-HHHHHHHHHHHhhc--CCCCccccCeeeeec
Q psy13917 17 LKARDSFDDWRLKESL-DLSDLVQRRLEYLQ--NPPDCRTARKLVCEL 61 (135)
Q Consensus 17 L~~~dg~~~wr~~~~~-~Ls~~vQ~rI~~lQ--NP~dC~~AkkL~c~~ 61 (135)
+...|-+++|+.+.-. .....+.+||.++| ||-|++..+.=+..+
T Consensus 6 ~~~~d~F~~W~~kLkD~~Aka~I~~Rl~rl~~GN~GD~kpvgeGV~EL 53 (100)
T COG3657 6 LKGTDTFSEWLKKLKDRRAKAKIAARLDRLALGNFGDVKPVGEGVSEL 53 (100)
T ss_pred ecchHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcCccccccchhhh
Confidence 4566778999987543 44567899999999 999977655444433
No 6
>PF15174 PRNT: Prion-related protein testis-specific
Probab=59.28 E-value=9.4 Score=24.54 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCCccc----cCeeee
Q psy13917 37 LVQRRLEYLQNPPDCRT----ARKLVC 59 (135)
Q Consensus 37 ~vQ~rI~~lQNP~dC~~----AkkL~c 59 (135)
.|-..++++|-|-||.. .||++|
T Consensus 25 avthSLW~LqiPvDcQACnRkskkiyc 51 (51)
T PF15174_consen 25 AVTHSLWHLQIPVDCQACNRKSKKIYC 51 (51)
T ss_pred HHHHHHHhhcCCcchhhhccccceecC
Confidence 35678999999999964 555554
No 7
>PRK10404 hypothetical protein; Provisional
Probab=53.21 E-value=25 Score=25.32 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhc
Q psy13917 7 FRSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQ 46 (135)
Q Consensus 7 ~~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQ 46 (135)
-++|..|+|.|.+..+... ..++.+|.+.++.+|+..+
T Consensus 14 l~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar 51 (101)
T PRK10404 14 LTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVK 51 (101)
T ss_pred HHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHH
Confidence 4688889999988776555 6778888888888887766
No 8
>PRK10132 hypothetical protein; Provisional
Probab=35.30 E-value=66 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=22.7
Q ss_pred HhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhc
Q psy13917 8 RSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQ 46 (135)
Q Consensus 8 ~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQ 46 (135)
++|+.|+|.|.+-.+... ..++.++...++..|+..+
T Consensus 22 ~~L~~~le~ll~~~~~~~--~~~~~~lR~r~~~~L~~ar 58 (108)
T PRK10132 22 NQLADSLESVLKSWGSDA--KGEAEAARRKAQALLKETR 58 (108)
T ss_pred HHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHH
Confidence 567777777766554333 4556667766666665544
No 9
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=31.35 E-value=47 Score=30.81 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=38.8
Q ss_pred CcchHHHHhHHH---HHH-------------HHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCc
Q psy13917 1 MEIAPVFRSLLH---VLD-------------TLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDC 51 (135)
Q Consensus 1 ~~~~~~~~sL~~---dle-------------~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC 51 (135)
||+||+-|-|.. ..+ .+.+.-|...-|..|...+++.+++.+..+=.+-.+
T Consensus 365 ~EVGPLAR~li~~~~~~~~~~~~~~~~~~~~~~~St~~R~~AR~~E~~~~~~~l~~~~~el~~n~~~ 431 (545)
T COG0374 365 VEVGPLARMLIAYAPGSTNLQEAKFTELPLEGIFSTLGRTAARVLEAKAAANILLKWLEELMENLKK 431 (545)
T ss_pred eeeCcHHHHHHhhcCCccccccchhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 799999999887 332 233444555678899999999999999988876654
No 10
>KOG3849|consensus
Probab=28.52 E-value=40 Score=29.38 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=29.8
Q ss_pred ccCee-eeecCCCcccchHHHHHHHHHHHHHhcCcEEEEec
Q psy13917 53 TARKL-VCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDS 92 (135)
Q Consensus 53 ~AkkL-~c~~~~~CGfGC~~H~~~~Cl~vA~~t~Rtlil~~ 92 (135)
.|.+| +|.- .=-||-|.-|...-|..|=+.|||||+..
T Consensus 28 P~GYl~yCPC--MGRFGNQaDhFLGsLAFAKaLnRTL~lPp 66 (386)
T KOG3849|consen 28 PAGYLLYCPC--MGRFGNQADHFLGSLAFAKALNRTLVLPP 66 (386)
T ss_pred CCccEEEccc--cccccchHHHHHHHHHHHHHhcccccCCc
Confidence 35554 3442 22499999999999999999999999875
No 11
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=24.32 E-value=1.4e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=23.1
Q ss_pred HhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhc
Q psy13917 8 RSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQ 46 (135)
Q Consensus 8 ~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQ 46 (135)
+.|..++|.|-+--|.-. ..++.+|...++..|+..|
T Consensus 18 ~~L~d~lEevL~ssg~~a--~~e~~~lR~r~~~~Lk~~r 54 (104)
T COG4575 18 QELLDTLEEVLKSSGSLA--GDEAEELRSKAESALKEAR 54 (104)
T ss_pred HHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHH
Confidence 456666777766655544 5666777666666665544
No 12
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=21.17 E-value=2e+02 Score=24.78 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=26.1
Q ss_pred ChhHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy13917 22 SFDDWRLKESLDLSDLVQRRLEYLQNPP 49 (135)
Q Consensus 22 g~~~wr~~~~~~Ls~~vQ~rI~~lQNP~ 49 (135)
+..+|+--|++.|-+++.+||+..+|+.
T Consensus 123 ~~~dW~LaEaeyLlrlA~qrL~l~~Dv~ 150 (372)
T PF04375_consen 123 SRDDWLLAEAEYLLRLANQRLQLEGDVQ 150 (372)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 6789999999999999999999999876
No 13
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=20.78 E-value=20 Score=27.20 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccc----hHH--------HHHHHHHHHHHhcCcEE--EEecCCC
Q psy13917 30 ESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYG----CQL--------HHVVYCFIVAYATRRTL--ILDSKEW 95 (135)
Q Consensus 30 ~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfG----C~~--------H~~~~Cl~vA~~t~Rtl--il~~~~~ 95 (135)
.-++|...||+.|+...... ..++.-. -.||-| ... =.+--|.-+.++.++.. +....+-
T Consensus 10 ~p~~L~~~lq~~id~~~~~~-----d~Ill~Y-G~Cg~~~g~~~~~~~~~~~~~~~~~dCI~~lLG~~~~~~~~~~~~gt 83 (166)
T PF07796_consen 10 DPDKLRKELQEEIDKASKDY-----DGILLFY-GLCGNGLGLIARRLPELGLVIPRVDDCIELLLGSEERYKEILREAGT 83 (166)
T ss_pred CHHHHHHHHHHHHHHhhccC-----CeEEEEE-eCCCCccchhhhhccccceeEeCCCccHHHHcCChHHHHHHhcCCCe
Confidence 34789999999999999333 3444444 349977 111 12234888888887663 2333444
Q ss_pred cccCCCccccccc
Q psy13917 96 SYSRGGWEEVFQP 108 (135)
Q Consensus 96 ~Y~~~gw~~~F~P 108 (135)
-|.++||.+.++.
T Consensus 84 ~flT~gW~~~~~~ 96 (166)
T PF07796_consen 84 YFLTPGWLKNWRD 96 (166)
T ss_pred EEECcHHHHHhHH
Confidence 4567888877766
Done!