Query psy13917
Match_columns 135
No_of_seqs 104 out of 106
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 23:45:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13917.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13917hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ixta_ g.3.6.1 (A:) Conotoxin 23.8 18 0.0013 18.1 1.5 19 45-66 6-24 (27)
2 d1x4ta1 a.2.15.1 (A:7-86) Pre- 21.5 15 0.0011 23.3 1.0 27 19-49 16-42 (80)
3 d1ve3a1 c.66.1.43 (A:2-227) Hy 19.5 67 0.0049 20.8 4.3 51 25-93 18-68 (226)
4 d1mb6a_ g.3.6.2 (A:) Huwentoxi 17.1 31 0.0022 18.3 1.5 15 47-61 10-26 (35)
5 d1v32a_ a.42.1.1 (A:) Hypothet 16.5 1E+02 0.0073 19.5 4.5 36 21-61 31-66 (101)
6 d2akja3 d.134.1.1 (A:431-556) 15.3 35 0.0025 21.9 1.8 39 32-76 25-63 (126)
7 d1v31a_ a.42.1.1 (A:) Hypothet 15.1 54 0.0039 20.3 2.7 42 13-61 17-58 (93)
8 d1im8a_ c.66.1.14 (A:) Hypothe 15.0 94 0.0069 20.6 4.3 39 17-71 16-54 (225)
9 d2e1fa1 a.60.8.1 (A:1142-1235) 14.2 82 0.006 19.3 3.5 33 12-44 52-84 (94)
10 d3c10a1 c.42.1.2 (A:515-900) H 13.0 46 0.0033 25.4 2.2 30 63-93 161-193 (386)
No 1
>d1ixta_ g.3.6.1 (A:) Conotoxin {Conus gloriamaris, Tx IXa [TaxId: 37336]}
Probab=23.77 E-value=18 Score=18.10 Aligned_cols=19 Identities=42% Similarity=1.100 Sum_probs=13.3
Q ss_pred hcCCCCccccCeeeeecCCCcc
Q psy13917 45 LQNPPDCRTARKLVCELNKGCG 66 (135)
Q Consensus 45 lQNP~dC~~AkkL~c~~~~~CG 66 (135)
-|.-+|| |.-.+|.+ .+||
T Consensus 6 cqshsdc--ashcictf-rgcg 24 (27)
T d1ixta_ 6 CQSHSDC--ASHCICTF-RGCG 24 (27)
T ss_dssp CSSSSCS--SSSEEEET-TEEE
T ss_pred ccchhhh--hhceeEee-eccc
Confidence 3666777 45688887 6787
No 2
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.51 E-value=15 Score=23.27 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=18.7
Q ss_pred ccCChhHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy13917 19 ARDSFDDWRLKESLDLSDLVQRRLEYLQNPP 49 (135)
Q Consensus 19 ~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~ 49 (135)
++..++.||...+.++++. +..+|||.
T Consensus 16 ~l~~aekwR~~iikEI~~k----vs~Iqn~~ 42 (80)
T d1x4ta1 16 ELPKAEKWRRQIIGEISKK----VAQIQNAG 42 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHH----HHHhcCCC
Confidence 4455678888877776654 55678886
No 3
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.45 E-value=67 Score=20.80 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=28.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEecC
Q psy13917 25 DWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSK 93 (135)
Q Consensus 25 ~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~Cl~vA~~t~Rtlil~~~ 93 (135)
.+...++..+...+++-| |++ . -+.++ +||-|....+++- . ..++.-+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~l-----~~~----~-~ILDi--GcG~G~~~~~la~-----~-~~~v~giD~S 68 (226)
T d1ve3a1 18 QEYRSRIETLEPLLMKYM-----KKR----G-KVLDL--ACGVGGFSFLLED-----Y-GFEVVGVDIS 68 (226)
T ss_dssp HHHHHHHHHHHHHHHHSC-----CSC----C-EEEEE--TCTTSHHHHHHHH-----T-TCEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHhc-----CCC----C-EEEEE--CCCcchhhhhHhh-----h-hccccccccc
Confidence 344455666666666644 322 2 24476 9999997765542 1 2355556653
No 4
>d1mb6a_ g.3.6.2 (A:) Huwentoxin-IV {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=17.06 E-value=31 Score=18.35 Aligned_cols=15 Identities=47% Similarity=0.986 Sum_probs=11.4
Q ss_pred CCCC--ccccCeeeeec
Q psy13917 47 NPPD--CRTARKLVCEL 61 (135)
Q Consensus 47 NP~d--C~~AkkL~c~~ 61 (135)
||+| |-+..+|+|+-
T Consensus 10 npsndqcck~s~lvcsr 26 (35)
T d1mb6a_ 10 NPSNDQCCKSSKLVCSR 26 (35)
T ss_dssp CSSSCCBCTTTTEEEET
T ss_pred CCCccccccccceeEec
Confidence 6765 77778899985
No 5
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.47 E-value=1e+02 Score=19.52 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=25.0
Q ss_pred CChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeec
Q psy13917 21 DSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCEL 61 (135)
Q Consensus 21 dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~ 61 (135)
++..--|....+.+.++|.. +.||||.| -++++|+-
T Consensus 31 ~~~~~sR~eVtk~iw~YIK~--nnLqdp~n---kr~I~~D~ 66 (101)
T d1v32a_ 31 TSEMISRYDVSDTIAKYISK--EGLLDPSN---KKKVVCDK 66 (101)
T ss_dssp CSSCCCHHHHHHHHHHHHHH--HTCBCSSC---TTEEECCS
T ss_pred CcccCCHHHHHHHHHHHHHH--hcCCCCcc---CCEEccCH
Confidence 34444566677777777654 68999995 57788883
No 6
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=15.27 E-value=35 Score=21.89 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHHHHHHH
Q psy13917 32 LDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQLHHVVY 76 (135)
Q Consensus 32 ~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~ 76 (135)
+.++..+.+++...... -+++--++ .+|--+|.-|++.=
T Consensus 25 ~~~a~~l~~~l~~~~~~-----p~k~kI~i-SGCpn~C~~~~i~D 63 (126)
T d2akja3 25 KARALKVTEEVQRLVSV-----TRPVRMHW-TGCPNSCGQVQVAD 63 (126)
T ss_dssp HHHHHHHHHHHHHHEEC-----SSCCEEEE-ESSTTCTTCGGGSS
T ss_pred HHHHHHHHHHHHhcccC-----CCceEEEE-eCCcchhhhhccCc
Confidence 44555555555443221 23566666 59999999988753
No 7
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.07 E-value=54 Score=20.32 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeec
Q psy13917 13 VLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCEL 61 (135)
Q Consensus 13 dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~ 61 (135)
+|.++-..+ +.-|....+.|-++|.. +.+|||.| -+++.|+=
T Consensus 17 ~La~~lg~~--~~sR~~v~k~iw~YIk~--n~Lqd~~n---kr~I~~D~ 58 (93)
T d1v31a_ 17 ALMDVLGIE--VETRPRIIAAIWHYVKA--RKLQNPND---PSFFNCDA 58 (93)
T ss_dssp HHHHHSCCS--EECSHHHHHHHHHHHHH--TTCBCSSC---SSEEECCS
T ss_pred HHHHHHCcC--cCcHHHHHHHHHHHHHH--hCCCCCCC---CCEEecCH
Confidence 444554444 44577888888888854 69999995 57788873
No 8
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}
Probab=14.97 E-value=94 Score=20.62 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=21.3
Q ss_pred HhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHH
Q psy13917 17 LKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQL 71 (135)
Q Consensus 17 L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~ 71 (135)
.+.++||..+ .+.+.. -+..+..|. .-+.++ +||.|-..
T Consensus 16 ~~~iP~Y~~~----~~~i~~----~~~~~~~~~------~~vLDl--GCGtG~~~ 54 (225)
T d1im8a_ 16 QRSVPGYSNI----ITAIGM----LAERFVTAD------SNVYDL--GCSRGAAT 54 (225)
T ss_dssp HHHSTTHHHH----HHHHHH----HHHHHCCTT------CEEEEE--SCTTCHHH
T ss_pred HhcCCCHHHH----HHHHHH----HHHHhcCCC------CEEEEe--ccchhhHH
Confidence 4567877774 222222 333333343 245676 99999754
No 9
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.17 E-value=82 Score=19.27 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHHHhccCChhHHHHHHhHHHHHHHHHHHHh
Q psy13917 12 HVLDTLKARDSFDDWRLKESLDLSDLVQRRLEY 44 (135)
Q Consensus 12 ~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~ 44 (135)
.+++.|.+++|.+..+.+..-++-..|++-...
T Consensus 52 ~t~~eL~~I~G~g~~k~~kyG~~l~~I~~~~~e 84 (94)
T d2e1fa1 52 TTVENVKRIDGVSEGKAAMLAPLLEVIKHFCQT 84 (94)
T ss_dssp CSHHHHTTSTTCCHHHHHHTHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999998877776666666665543
No 10
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.95 E-value=46 Score=25.43 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCcccchHHHHHHHHHHHHHhc---CcEEEEecC
Q psy13917 63 KGCGYGCQLHHVVYCFIVAYAT---RRTLILDSK 93 (135)
Q Consensus 63 ~~CGfGC~~H~~~~Cl~vA~~t---~Rtlil~~~ 93 (135)
.+.|| |.+-+++.....+... +|++|+|..
T Consensus 161 ~~~GF-C~fNdvAiaa~~l~~~~~~~rV~iiD~D 193 (386)
T d3c10a1 161 TAMGF-CFFNSVAIACRQLQQQSKASKILIVDWD 193 (386)
T ss_dssp BCBTT-BSSCHHHHHHHHHHHHSTTCCEEEEECS
T ss_pred ccCCc-ccccHHHHHHHHHHhhcccCCceEEecc
Confidence 36777 8888888877766655 599999975
Done!