RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13922
(509 letters)
>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
Length = 481
Score = 531 bits (1370), Expect = 0.0
Identities = 213/506 (42%), Positives = 283/506 (55%), Gaps = 99/506 (19%)
Query: 10 QVLALVSLPQLFDDP----RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
QVL+LV P L +DP FP DV RA+ L+ G G+YTDS G +R+ VA +
Sbjct: 69 QVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAI-GGGTGAYTDSAGYPFVRKAVAAF 127
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
I RRDG P D D+ L+ GAS GIK +L+LLI D GV+IPIPQYPLYSA++
Sbjct: 128 IERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD---PSDGVMIPIPQYPLYSAAITLLG 184
Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDII 184
+Q+ YYLDE K W L ELE + +A ++ PRA+V+INPGNPTGQVLT++ +++II
Sbjct: 185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEII 244
Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGE 243
KF + + + L ADEVYQ+N+Y F SF+KVL+E+ Y +EL SF S SKG +GE
Sbjct: 245 KFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGE 304
Query: 244 CGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL 303
CG RGGY E+ N+ P V+ ++K S LC V
Sbjct: 305 CGRRGGYFELTNIPPEVREQIYKLASINLCSNV--------------------------- 337
Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
VGQ + + NPP+ G+ SY + RE+ ++ SLK+RA+++ D N IEG+SC
Sbjct: 338 -------VGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC 390
Query: 364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH 423
PV+GAMYAFP+++LP KAI +AK G P VLY ELLE TGI +VPG+GFGQ PGTYH
Sbjct: 391 QPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYH 450
Query: 424 FRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTI 483
FR I I
Sbjct: 451 FR------------------------------------ITI------------------- 455
Query: 484 LPQPEKLKAMLEKFREFHEEFLAKYK 509
LP E+++ M++K +EFHE F+ KY
Sbjct: 456 LPPEEQIEEMVKKIKEFHESFMKKYG 481
>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase.
Length = 534
Score = 378 bits (973), Expect = e-126
Identities = 189/421 (44%), Positives = 247/421 (58%), Gaps = 42/421 (9%)
Query: 10 QVLALVSLPQLFDDPR----FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
+VLAL P L D F D +RA +LD G++ G+Y+ S GI+ +R +A
Sbjct: 121 EVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAG 180
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
I RDG PAD D+ L+ GAS + +++LLI +K G+L PIPQYPLYSAS+A
Sbjct: 181 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---EKDGILCPIPQYPLYSASIALHG 237
Query: 126 MEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAIVIINPGNPTGQVLTKENIQDII 184
+ YYLDE+ WGL ISEL++ + +AR K RA+V+INPGNPTGQVL +EN +DI+
Sbjct: 238 GTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIV 297
Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC 244
+F +E L L ADEVYQ+NVY KF+SFKKV MG K + L SF S SKGY GEC
Sbjct: 298 EFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGEC 357
Query: 245 GLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLD 304
G RGGY EV V+ ++K S LC +
Sbjct: 358 GKRGGYMEVTGFTSDVREQIYKVASVNLCSNI---------------------------- 389
Query: 305 GCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
GQ + V++PP+PG+ SYE + EK +L SL +RAK + D NS+EG++CN
Sbjct: 390 ------SGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCN 443
Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
+GAMY FP++ LP KAI A+A P Y LL TGI +VPG+GFGQVPGT+HF
Sbjct: 444 KAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHF 503
Query: 425 R 425
R
Sbjct: 504 R 504
>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase.
Length = 407
Score = 372 bits (956), Expect = e-125
Identities = 167/384 (43%), Positives = 236/384 (61%), Gaps = 44/384 (11%)
Query: 10 QVLALVSLPQLFDDPR----FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
QV+AL P L DDP FP D RA+ L G +G+Y+DS G+ +R+ VA++
Sbjct: 61 QVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAEF 119
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
I RRDG P+D + + L+ GAS G+ +L +I G+K GVL+P+PQYPLYSA+++
Sbjct: 120 IERRDGYPSDPELIFLTDGASKGVMQILNAVIR---GEKDGVLVPVPQYPLYSATISLLG 176
Query: 126 MEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAIVIINPGNPTGQVLTKENIQDII 184
+ YYL+ES+ WGL ++ L +S+ +AR K RA+VIINPGNPTGQ L++ N+++I+
Sbjct: 177 GTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 236
Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY-KSMELASFMSCSKGYMGE 243
KF ++E+L L DEVYQ N+Y + F S KKVL++MG P K ++L SF + SKGY GE
Sbjct: 237 KFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGE 296
Query: 244 CGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVL 303
CG RGGY E+ N+ P ++K S L P V
Sbjct: 297 CGQRGGYFEMTNIPPKTVEEIYKVASIALSPNV--------------------------- 329
Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
GQ M +VNPP+PG+ SY+QF RE + +L+SL++RA+M+ D FNS + + C
Sbjct: 330 -------SGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVC 382
Query: 364 NPVQGAMYAFPQMKLPAKAIAKAK 387
N +GAMY+FPQ+KLP KAI A+
Sbjct: 383 NFTEGAMYSFPQIKLPPKAIEAAR 406
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 178 bits (454), Expect = 4e-51
Identities = 100/410 (24%), Positives = 173/410 (42%), Gaps = 85/410 (20%)
Query: 23 DPRF--PDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW-QD 78
+P F P+ + + A +A+ +G YT S GI +R +A+ RR G D ++
Sbjct: 37 EPDFPTPEHIIEAAIEALEEGGTH-----YTPSAGIPELREAIAEKYKRRYGLDVDPEEE 91
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK- 137
+I++AGA + + L+ D VLIP P YP Y A++ + + LDE +
Sbjct: 92 IIVTAGAKEALFLAFLALLNPGDE----VLIPDPGYPSYEAAVKLAGGKPVPVPLDEEEN 147
Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
+ + +LE +IT +AI++ +P NPTG V +KE ++ I++ A + + +D
Sbjct: 148 GFKPDLEDLEAAITP-----KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202
Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELA-SFMSCSKGYMGECGLRGGYSEVINL 256
E+Y++ VY +G++ S E + + + S SK Y G G R G+ V
Sbjct: 203 EIYEELVY-DGAEHPSI-------LELAGARDRTITINSFSKTY-GMTGWRIGWV-VGPP 252
Query: 257 DPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVM 316
+ + A+ C A + + P+ + V++ +
Sbjct: 253 EELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREE--------------- 297
Query: 317 DCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC-NPVQGAMYAFPQ 375
++R ++ + N I G+S P +GA Y FP
Sbjct: 298 ---------------------------YRERRDLLVEALNEIGGLSVVKPPEGAFYLFP- 329
Query: 376 MKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
K S +A +LLE G+ +VPG+GFG+ PG + R
Sbjct: 330 -----------KIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVR 368
Score = 49.2 bits (118), Expect = 3e-06
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF 500
K S +A + LE G+ +VPG+GFG+ PG + R ++ E L+ L + F
Sbjct: 329 PKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARF 388
Query: 501 HEEF 504
E+
Sbjct: 389 LAEY 392
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 158 bits (401), Expect = 6e-44
Identities = 77/403 (19%), Positives = 152/403 (37%), Gaps = 78/403 (19%)
Query: 23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
+P FP + +A+ + Y PG+ +R +A+++ RR G ++++++
Sbjct: 7 EPDFPPP-PEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVT 65
Query: 83 AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
GA + + +L+ L+ D VL+P P YP Y A+ E + LDE + L
Sbjct: 66 NGAQEALSLLLRALLNPGDE----VLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLD 121
Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
+ LE + T + + + NP NPTG VL++E ++++ + A + + + +DE Y +
Sbjct: 122 LELLEAAKTP-----KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAE 176
Query: 203 NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA 262
VY +G + L++ E + S SK + G GLR GY + + ++
Sbjct: 177 LVY-DGEPPPALA--LLDAYER-----VIVLRSFSKTF-GLPGLRIGYL-IAPPEELLER 226
Query: 263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP 322
+ P+ L+ + DD + +++ +
Sbjct: 227 LKKLLPYTTSGPSTLSQAAAAAALDDGE--EHLEELRER--------------------- 263
Query: 323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKA 382
++R + + + + G + + LP
Sbjct: 264 ---------------------YRRRRDALLEALKELGPLVVVKPSGGFFLWL--DLPEGD 300
Query: 383 IAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
+ LL G+ + PG+ FG+ G R
Sbjct: 301 DEEF-----------LERLLLEAGVVVRPGSAFGE-GGEGFVR 331
Score = 35.8 bits (83), Expect = 0.047
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 453 AFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE 499
L G+ + PG+ FG+ G R + E+L+ LE+ E
Sbjct: 305 LERLLLEAGVVVRPGSAFGE-GGEGFVRLSFATPEEELEEALERLAE 350
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 134 bits (341), Expect = 7e-35
Identities = 112/408 (27%), Positives = 169/408 (41%), Gaps = 128/408 (31%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
Y+DS G+ R+ + QY ++ D D+ + G S+ I ++ L+ + D VL
Sbjct: 68 YSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDE----VL 123
Query: 109 IPIPQYPLYSA--SLAEFNMEQIG----YYL-DESKQWGLPISELERSITEARKHCNPRA 161
+P P YPL++A SL+ G +YL DE W + ++ IT +A
Sbjct: 124 VPAPDYPLWTAAVSLS-------GGKPVHYLCDEEAGWFPDLDDIRSKITP-----RTKA 171
Query: 162 IVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEM 221
IVIINP NPTG V +KE +++I++ A + L +FADE+Y D + +G+ S
Sbjct: 172 IVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIY-DKILYDGAVHIS-------- 222
Query: 222 GEPYKSMELAS---------FMSCSKGYMGECGLRGG-------------YSEVINLDPG 259
+AS F SK Y G R G Y E ++
Sbjct: 223 --------IASLAPDLLCVTFNGLSKAYRV-AGFRVGWMVLSGPKKHAKGYIEGLD---- 269
Query: 260 VKAMLHKSISAM-LCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQTVMD 317
ML ++M LC V A Q A Q L G QS+ + ++
Sbjct: 270 ---ML----ASMRLCANVPA------------------QHAIQTALGG--YQSINELIL- 301
Query: 318 CVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMK 377
PG YEQ R+ + N+I G+SC +GA+YAFP K
Sbjct: 302 -------PGGRLYEQ--RD-------------RAWELLNAIPGVSCVKPKGALYAFP--K 337
Query: 378 LPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
L K + + + + +LL + + +V G GF P HFR
Sbjct: 338 LDPK-VYPIHDDEQ-----FVLDLLLQEKVLLVQGTGF-NWPEPDHFR 378
Score = 36.7 bits (86), Expect = 0.022
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 453 AFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK 509
+ L + + +V G GF P HFR LP+ + L+ + + FL+ Y+
Sbjct: 352 VLDLLLQEKVLLVQGTGF-NWPEPDHFRIVTLPRVDDLEEAIGRI----GRFLSGYR 403
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 118 bits (297), Expect = 4e-29
Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 13/192 (6%)
Query: 23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
D + +AV D R Y S G R VA+Y+S DV+L+
Sbjct: 44 FGNLRTDP-EAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLT 102
Query: 83 AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY-LDESKQWGL 141
+G S I+ + IE + +L+P P +PLY A F+ ++ Y L K W +
Sbjct: 103 SGCSQAIE----ICIEALANPGANILVPRPGFPLYDT-RAAFSGLEVRLYDLLPEKDWEI 157
Query: 142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
+ LE E AIV+INP NP G V +++++Q I + A + + + ADE+Y
Sbjct: 158 DLDGLESLADE-----KTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYG 212
Query: 202 DNVYAEGSKFYS 213
V+ + F
Sbjct: 213 HMVFG-DAPFIP 223
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 110 bits (278), Expect = 2e-26
Identities = 108/412 (26%), Positives = 172/412 (41%), Gaps = 102/412 (24%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P+ +K+ A LD G++ YT + GI +R +A + R +G D VI++ GA
Sbjct: 46 PEHIKEAAIEALD--DGKT--KYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAK 101
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
+ + L++ PG V+IP P + Y + + E + L +
Sbjct: 102 QALYNAFMALLD------PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVE 155
Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
+LE +IT +A+++ +P NPTG V + E ++ I A +++ +DE+Y+ V
Sbjct: 156 QLEAAITP-----KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLV 210
Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY----SEVINLDPG 259
Y +G++F S + E+ + +++ + F SK Y M G R GY E+I
Sbjct: 211 Y-DGAEFTSIASLSPELRD--RTITVNGF---SKAYAM--TGWRLGYAAGPKELI----- 257
Query: 260 VKAM--LH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQ-AVLDGCRGQSVGQTV 315
KAM L S S PT +A Q A A L+G +
Sbjct: 258 -KAMSKLQSHSTS---NPTSIA------------------QYAAVAALNGPQ-------- 287
Query: 316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQ 375
D V E + F ++R ++ D N I G+ C +GA Y FP
Sbjct: 288 -DEV-------EEMRQAF-----------EERRDLMVDGLNEIPGLECPKPEGAFYVFPN 328
Query: 376 MKLPAKAIAKAKAEGKCPSVLYAF--ELLERTGICIVPGAGFGQVPGTYHFR 425
+ K GK + F LLE G+ +VPG FG PG + R
Sbjct: 329 VS---------KLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA-PG--YVR 368
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 108 bits (272), Expect = 1e-25
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 11/179 (6%)
Query: 35 QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK 94
QA+ D Y + G R +A Y DG P + DV+L +G S I+
Sbjct: 55 QAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIE---- 109
Query: 95 LLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEAR 154
+ I + +L+P P +PLY +E Y L K W + + +LE I E
Sbjct: 110 MCIAALANAGQNILVPRPGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE-- 167
Query: 155 KHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS 213
A+V+ NP NP G V +++++++I+ A R+ L + ADE+Y D V+ G+ F
Sbjct: 168 ---KTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEP 222
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 105 bits (264), Expect = 7e-25
Identities = 88/401 (21%), Positives = 144/401 (35%), Gaps = 77/401 (19%)
Query: 20 LFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD- 78
L D P V + + L G + Y + G+ +R +A+++ R D +
Sbjct: 12 LGDSGTLPA-VAKAEKDALAG---GTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAA 67
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
V+ +GA I++++ LL + +L+P P YP Y E + Y L S
Sbjct: 68 VVFGSGAGANIEALIFLLRLN---PGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSND 124
Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
+ L LE ++ EA + + ++ +P NPTG V T E ++ ++ A + L DE
Sbjct: 125 FHLDFDALEAALKEATE--GNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDE 182
Query: 199 VYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP 258
Y V+ GS + L+ G L S SK G G R GY I +
Sbjct: 183 AYAGFVF--GSLDAVATRALLAEG-----PNLLVVGSFSKA-FGLAGWRVGY---ILGNA 231
Query: 259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC 318
V + L K T L + L D ++++ Q
Sbjct: 232 AVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQR----------------- 274
Query: 319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
+K+R + D + G+S P Q + +
Sbjct: 275 -------------------------IKERRDYLRDGLEAA-GLSVLPSQAGFFLLTGLD- 307
Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVP 419
P A+A A+ LLE G+ + PG+ FG
Sbjct: 308 PEAALALAQV------------LLEEVGVYVTPGSSFGGPG 336
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 103 bits (258), Expect = 5e-24
Identities = 98/404 (24%), Positives = 164/404 (40%), Gaps = 85/404 (21%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGS--YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
P+ +K+ CR G Y S G+ +R + + R++G DV ++A
Sbjct: 48 PEHMKEAY------CRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAA 101
Query: 85 ASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
++ ++ + L++ D +LIP P YP Y+ + + + Y E + W I
Sbjct: 102 VTEALQLIFGALLDPGDE----ILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDID 157
Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
++ + ITE K AI +INP NPTG + K+ +++I+ A L + +DE+Y
Sbjct: 158 DIRKKITEKTK-----AIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMT 212
Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP---GVK 261
Y EG K S + ++ P M SK Y G R GY ++ + V+
Sbjct: 213 Y-EG-KHVSPGSLTKDV--PVIVMN-----GLSKVYFAT-GWRLGYIYFVDPEGKLAEVR 262
Query: 262 AMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVN 321
+ K LCP + P F A + G G MD +
Sbjct: 263 EAIDKLARIRLCP------NTPAQF--------------AAIAGLTGP------MDYL-- 294
Query: 322 PPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAK 381
E++ ++ LK+R + N I G+S QGA Y FP+++
Sbjct: 295 ---------EEYMKK-------LKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIE---- 334
Query: 382 AIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
K + + + ++L + V G+GFG+ G HFR
Sbjct: 335 -EGPWKDDKE-----FVLDVLHEAHVLFVHGSGFGEY-GAGHFR 371
Score = 36.7 bits (85), Expect = 0.024
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLA 506
L + V G+GFG+ G HFR LP E L+ +++F EF E L
Sbjct: 349 LHEAHVLFVHGSGFGEY-GAGHFRLVFLPPVEILEEAMDRFEEFMRERLG 397
>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated.
Length = 433
Score = 97.7 bits (244), Expect = 7e-22
Identities = 98/400 (24%), Positives = 152/400 (38%), Gaps = 104/400 (26%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL 108
Y + G+ R +A+ ++R G D+I G D I + LL + V+
Sbjct: 69 YCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREAR-----VI 123
Query: 109 IPIPQYPLYS-ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR--AIVII 165
P P Y +S A A + Y LD W + +LE + K+ NP I++I
Sbjct: 124 GPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKV----KY-NPSIAGILLI 178
Query: 166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY 225
NP NPTG V KE +++I+ A LF+ DE+Y + VY G K +V+ ++ P
Sbjct: 179 NPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVY-NGKKTVPLSEVIGDV--PG 235
Query: 226 KSMELASFMSCSKGYMGEC---GLRGGYSEVINL--DPGVKAMLHKSISAML-------C 273
++ KG E G R G+ EV N D + K I+++L C
Sbjct: 236 IAL---------KGISKELPWPGSRCGWIEVYNADKDE----VFKKYINSILNAKMIEVC 282
Query: 274 PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQF 333
T L +++P++ P + + +K+R + YE+
Sbjct: 283 STTLPQMAIPRIMSHPEYKNYLKERNK----------------------------RYEKR 314
Query: 334 SREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMY---AF------PQMKLP-AKAI 383
S + + + G+ N GA Y F + LP
Sbjct: 315 S--------------NIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPE 360
Query: 384 AKAKAEGKCPS--------VLYAFELLERTGICIVPGAGF 415
K EG V Y LL TGIC+VP + F
Sbjct: 361 VKEYVEGLVKGPVSPDKRFVYY---LLASTGICVVPLSSF 397
Score = 33.0 bits (76), Expect = 0.41
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 457 LERTGICIVPGAGF-GQVPGTYHFRTTILPQ-PEKLKAMLEKFREFHEEFLA 506
L TGIC+VP + F ++ G FR T+L + EK + + + E EE+LA
Sbjct: 384 LASTGICVVPLSSFCTELNG---FRVTLLERDEEKFEWIYQTLAEKIEEYLA 432
>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 95.2 bits (237), Expect = 7e-21
Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 25 RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
R PD+V L G Y+DS G+ R+ + QY + D D+ G
Sbjct: 162 RTPDEVVYDMAQQLTDTEG-----YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNG 216
Query: 85 ASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
S+ I + L++D D VLIP P YPL++A + + Y DE +W I
Sbjct: 217 VSELINLSMSALLDDGDE----VLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDID 272
Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
++ IT +AIVIINP NPTG + +E +Q I+ A +L +F+DE+Y V
Sbjct: 273 DIRSKITS-----RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLV 327
Query: 205 Y 205
Sbjct: 328 M 328
Score = 37.8 bits (88), Expect = 0.014
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 25/99 (25%)
Query: 338 QSVLDSL-------KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQM---KLPAKAIAKAK 387
QSV D L +QR ++V + N+I G+S + A Y FP++ K +
Sbjct: 407 QSVKDYLVPGGRVYEQR-ELVYNALNAIPGISAVKPKAAFYIFPKIDVKKFNIHDDEQ-- 463
Query: 388 AEGKCPSVLYAFELLERTGICIVPGAGFG-QVPGTYHFR 425
+A +LL + IV G GF P HFR
Sbjct: 464 ---------FALDLLHDKKVLIVQGTGFNWDKPD--HFR 491
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 93.4 bits (233), Expect = 1e-20
Identities = 96/384 (25%), Positives = 154/384 (40%), Gaps = 93/384 (24%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-- 106
Y+ S GI +R A+Y ++ G + +++++ G S+ I + + I D PG
Sbjct: 62 YSHSQGIPELREAFAKYY-KKWGIDVEPDEILITNGGSEAILFAM-MAICD-----PGDE 114
Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP-ISELERSITEARKHCNPRAIVII 165
+L+P P Y Y+ ++ + + + LP E+E+ IT +AI+I
Sbjct: 115 ILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP-----KTKAILIS 169
Query: 166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF--------KKV 217
NPGNPTG V TKE ++ + + A + LFL +DEVY++ VY +G K+ S + +
Sbjct: 170 NPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVY-DGLKYTSALSLEGLEDRVI 228
Query: 218 LVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVL 277
+++ S SK Y CG R G +I+ + + A K A L P L
Sbjct: 229 IID--------------SVSKRY-SACGARIGC--LISKNKELIAAAMKLCQARLSPPTL 271
Query: 278 ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREK 337
+ L D P E + E
Sbjct: 272 EQIGAAALLDTP-----------------------------------------ESYFDE- 289
Query: 338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY 397
V + K+R ++ + N I G+ C +GA Y KLP AE +L
Sbjct: 290 --VREEYKKRRDILYEELNKIPGVVCEKPKGAFYII--AKLPVD-----DAEDFAKWLLT 340
Query: 398 AFELLERTGICIVPGAGFGQVPGT 421
F T + + P +GF PG
Sbjct: 341 DFNYNGET-VMVAPASGFYATPGL 363
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 85.2 bits (211), Expect = 9e-18
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 35 QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD------WQDVILSAGASDG 88
+A+++ Q Y + G R VA Y +V+L +G S
Sbjct: 57 KALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHA 116
Query: 89 IKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER 148
I L L ++ D +L+P P +P Y + +E Y K W + E+ R
Sbjct: 117 ILMALTALCDEGDN----ILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEI-R 171
Query: 149 SITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEG 208
+ + R +A+++ NP NP G ++++++DII+ +L L +DE+Y V+ G
Sbjct: 172 RLVDDRT----KALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVF-NG 226
Query: 209 SKFYS 213
+ F S
Sbjct: 227 ATFTS 231
>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 430
Score = 83.3 bits (206), Expect = 4e-17
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
Query: 36 AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL 95
AV R SY+ G+ RR +A+Y+SR D+ L+AG + I+ ++ +
Sbjct: 77 AVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSV 136
Query: 96 LIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA 153
L +PG +L+P P YPLY A +E + L + W E++ EA
Sbjct: 137 L------AQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGW-----EVDLEGVEA 185
Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE 207
N A+VIINP NP G V + E++ I + A + + + ADEVY +
Sbjct: 186 LADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS 239
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 82.1 bits (203), Expect = 7e-17
Identities = 91/382 (23%), Positives = 160/382 (41%), Gaps = 91/382 (23%)
Query: 44 QSVGSYTDSPGIEIIRRHVAQYISRR---DGQPADWQDVILSAGASDGIKSVLKLLIEDV 100
Q SYT + G+ +R+ +A+Y+ +R P D ++I++ GAS + ++ +I
Sbjct: 48 QGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPND--EIIVTVGASQALDVAMRAIIN-- 103
Query: 101 DGKKPG--VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKH 156
PG VLI P + Y+ +LA + L+ ++ + +++E +IT K
Sbjct: 104 ----PGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLE--NEFKVQPAQIEAAITAKTK- 156
Query: 157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKK 216
AI++ +P NPTG VL K +++I + L + +DE+Y + Y E + SF
Sbjct: 157 ----AILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE--AYTSFAS 210
Query: 217 VLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLC-PT 275
+ M E +++ ++ F SKG+ G R G+ + +AML +M+C PT
Sbjct: 211 I-KGMRE--RTILISGF---SKGF-AMTGWRLGF--IAAPVYFSEAMLKIHQYSMMCAPT 261
Query: 276 VLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR 335
+ +L L + G +
Sbjct: 262 MAQFAALEAL--------------------------------------RAGNDDVIRMR- 282
Query: 336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSV 395
DS ++R +FN I G++C+ GA YAFP + S
Sbjct: 283 ------DSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSIS-----------STGLSSE 324
Query: 396 LYAFELLERTGICIVPGAGFGQ 417
+A +LL + +VPG+ FG+
Sbjct: 325 EFAEQLLLEEKVAVVPGSVFGE 346
>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1.
Length = 462
Score = 81.3 bits (200), Expect = 2e-16
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 36 AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL 95
AV+D R SY GI RR VA Y++R +D+ L+AG + GI+ +
Sbjct: 91 AVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIE----I 146
Query: 96 LIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARK 155
+ E + +L+P P +P Y A A +E + L K+W + + +E E
Sbjct: 147 VFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADE--- 203
Query: 156 HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ-----DNVYAEGSK 210
N A+V+INP NP G V + ++++ + + A + + + +DEVY DN + K
Sbjct: 204 --NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGK 261
Query: 211 FYSFKKVLVEMG 222
F S VL G
Sbjct: 262 FASIVPVLTLAG 273
>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 409
Score = 78.9 bits (194), Expect = 8e-16
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 31/261 (11%)
Query: 36 AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKL 95
A+++ R SY + GI RR +A Y+S DV L+ G + ++K+
Sbjct: 57 AIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKV 116
Query: 96 LIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA 153
L +P +L+P P +P ++E + L K W E++ EA
Sbjct: 117 L------ARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGW-----EVDLDAVEA 165
Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS 213
N A+VIINPGNP G V + E++ I + A + + + ADEVY V+ GSK +
Sbjct: 166 IADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVF--GSKPF- 222
Query: 214 FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP-------GVKAMLHK 266
V MG + + + S SK +M G G+ ++ DP + + K
Sbjct: 223 -----VPMGLFASIVPVITLGSISKRWMIP-GWGLGW--LVTCDPSGLLQICEIADSIKK 274
Query: 267 SISAMLCPTVLALVSLPQLFD 287
+++ P ++P++ +
Sbjct: 275 ALNPAPFPPTFIQAAIPEILE 295
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 78.0 bits (192), Expect = 2e-15
Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 35 QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK 94
+AV+D + Y + G+ RR +A+Y+SR DV +++G + I L
Sbjct: 55 EAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALS 114
Query: 95 LLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITE 152
+L +PG +L+P P +P+Y A ++E L K W E++ E
Sbjct: 115 ML------ARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGW-----EVDLDAVE 163
Query: 153 ARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
A N A+VIINPGNP G V + ++++ I + A + K+ + ADEVY
Sbjct: 164 ALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVY 211
>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 74.1 bits (182), Expect = 3e-14
Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 20/198 (10%)
Query: 23 DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
+P F P ++K+ A+ LD + YT + GI +R +A+Y + G D +VI
Sbjct: 42 EPDFDTPKNIKEAAKRALD----EGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVI 97
Query: 81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQ 138
++AGA + + L+E+ D V+IP P + Y A +AE +I L E +
Sbjct: 98 VTAGAYEATYLAFESLLEEGDE----VIIPDPAFVCYVEDAKIAEAKPIRIP--LREENE 151
Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
+ EL IT+ R IVI P NPTG L KE + I A +++ +DE
Sbjct: 152 FQPDPDELLELITK-----RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDE 206
Query: 199 VYQDNVYAEGSKFYSFKK 216
Y+ +Y EG+K Y K
Sbjct: 207 PYEHFLY-EGAKHYPMIK 223
Score = 31.0 bits (70), Expect = 1.7
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 346 QRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERT 405
+R K+V + + +GA Y F + E S +A LLE+
Sbjct: 300 ERRKLVLKRLKEMPHIKVFEPKGAFYVFANID-----------ETGMSSEDFAEWLLEKA 348
Query: 406 GICIVPGAGFGQ 417
+ ++PG FG+
Sbjct: 349 RVVVIPGTAFGK 360
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 73.2 bits (180), Expect = 5e-14
Identities = 92/399 (23%), Positives = 156/399 (39%), Gaps = 85/399 (21%)
Query: 23 DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
DP D A D +G + YTDS G + + +Y S+ +++ +
Sbjct: 38 DPDLITDESIINAAFEDAKKGHT--RYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMAT 95
Query: 83 AGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLP 142
GA G+ L+ +++ D V+I P + Y + + I E + +
Sbjct: 96 VGACHGMYLALQSILDPGDE----VIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQIN 151
Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
+ +LE IT K AI++ +P NPTG V +KE +++I K A LF+ +DEVY
Sbjct: 152 VKKLEALITSKTK-----AIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDG 206
Query: 203 NVYAEGSKFYSFKKVLVEM----GEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDP 258
+SF + V M G P +++ SF SK + G R GY VI D
Sbjct: 207 ---------FSFYEDFVPMATLAGMPERTITFGSF---SKDF-AMTGWRIGY--VIAPDY 251
Query: 259 GVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDC 318
++ K I+ +C F P + QRA T++
Sbjct: 252 IIETA--KIINEGIC------------FSAP----TISQRA-----AIYALKHRDTIVPL 288
Query: 319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
+ + ++R + SI +S +P +G++YAF +K
Sbjct: 289 IK---------------------EEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKK 327
Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ 417
+ SV + +LL+ + ++PG FG+
Sbjct: 328 TGLS-----------SVEFCEKLLKEAHVLVIPGKAFGE 355
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 72.1 bits (178), Expect = 1e-13
Identities = 42/198 (21%), Positives = 88/198 (44%), Gaps = 43/198 (21%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P VK+ + + + + Y + G +R +A+ ++RR G P ++++ GA+
Sbjct: 48 PAAVKEALRELAEE-EDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAA 106
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLD---------- 134
+ LK ++ PG V++ P + Y +Y+D
Sbjct: 107 GALNVALKAILN------PGDEVIVFAPYFVEY------------RFYVDNHGGKLVVVP 148
Query: 135 -ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ---DIIKFAHRE 190
++ + + LE +IT +A++I +P NPTG V ++E ++ +++ +E
Sbjct: 149 TDTDTFQPDLDALEAAITP-----KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKE 203
Query: 191 ---KLFLFADEVYQDNVY 205
++L +DE Y++ VY
Sbjct: 204 YGRPIYLISDEPYREIVY 221
Score = 31.7 bits (73), Expect = 1.00
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 360 GMSCNPVQGAMYAFPQMKLP-AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV 418
G C QGA Y FP+ A + + LL +VPG+GFG
Sbjct: 320 GFECVKPQGAFYLFPKSPEEDDVAFCEKAKK---------HNLL------LVPGSGFG-C 363
Query: 419 PGTYHFR 425
PG +FR
Sbjct: 364 PG--YFR 368
Score = 29.4 bits (67), Expect = 4.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 462 ICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEF 504
+ +VPG+GFG PG +FR + E ++ L F + +E+
Sbjct: 353 LLLVPGSGFG-CPG--YFRLSYCVDTETIERSLPAFEKLAKEY 392
>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
Length = 382
Score = 71.1 bits (175), Expect = 2e-13
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
PD ++ A A L G++ YT + GI +R +A+Y+SR G + + +++
Sbjct: 39 PDFIRDAAAAALA--DGETF--YTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGV 94
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLD-ESKQWGLPI 143
+ + L+ PG V+ P +P A+ + LD W L +
Sbjct: 95 QALMLAAQALVG------PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDL 148
Query: 144 SELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDN 203
L +IT RA+ I +P NPTG ++++++ I+ R L++ ADEVY+
Sbjct: 149 DRLLAAITPR-----TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERL 203
Query: 204 VYAEGSKFYSF 214
YA G + SF
Sbjct: 204 YYAPGGRAPSF 214
Score = 31.1 bits (71), Expect = 1.5
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 338 QSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLY 397
++ L++ + D ++ G+ GAMYAF ++ G S+
Sbjct: 285 AELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRI------------PGVTDSLAL 332
Query: 398 AFELLERTGICIVPGAGFG 416
A L++ G+ + PG FG
Sbjct: 333 AKRLVDEAGLGLAPGTAFG 351
>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 70.9 bits (174), Expect = 3e-13
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 24 PRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVI 80
P F P VK+ A+ + ++ SYT + G+ +R+ ++ + + ++I
Sbjct: 38 PDFPTPSHVKEAAKRAIT----ENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEII 93
Query: 81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ-W 139
++ GAS+ I + ++E V++P P YP Y + + + ++D +
Sbjct: 94 VTIGASEAIDIAFRTILEPGTE----VILPAPIYPGYEPIIRLCGAKPV--FIDTRSTGF 147
Query: 140 GLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
L LE +ITE R +V+ P NPTG L+KE +QDI + +F+ +DE+
Sbjct: 148 RLTAEALENAITE-----KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEI 202
Query: 200 YQDNVY 205
Y + VY
Sbjct: 203 YSELVY 208
Score = 28.9 bits (65), Expect = 6.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ 417
GA Y FP +I S +A +L+E G+ +VPG+ F +
Sbjct: 315 GAFYLFP-------SIGHFTM----SSFDFALDLVEEAGLAVVPGSAFSE 353
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 68.5 bits (168), Expect = 2e-12
Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 20 LFDDPRFP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD 78
L D FP + +++ VL Y + G+ +R +A Y+ R G + +
Sbjct: 98 LPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQ 157
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
+++++GA + +L+LL++ D VL+ P YP +L I +DE
Sbjct: 158 IVITSGAQQALDLLLRLLLDPGD----TVLVEDPTYPGALQALEALGARVIPVPVDED-- 211
Query: 139 WGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
G+ LE ++ + + P+A+ + NPTG ++ E + ++ A + + + D
Sbjct: 212 -GIDPEALEEALAQWK----PKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIED 266
Query: 198 EVYQD 202
+ Y +
Sbjct: 267 DYYGE 271
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 68.1 bits (167), Expect = 2e-12
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 15 VSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP 73
V+L Q F D P ++ + A +A+ G V Y PGI +R +A RR G
Sbjct: 27 VNLGQGFPDEDGPPEMLEAAQEAIAGG-----VNQYPPGPGIPELRAAIAAQRRRRYGLE 81
Query: 74 ADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIG 130
D +V+++ GA++ I + + L+E PG VL+ P Y Y+A +A ++
Sbjct: 82 YDPDTEVLVTVGATEAIAAAVLGLVE------PGDEVLLIEPYYDSYAAVIAMAGAHRVP 135
Query: 131 YYLDES-KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR 189
L + + L + L ++T RA+++ +P NPTG VLT + I + A
Sbjct: 136 VPLVPDGRGFALDLDALRAAVTP-----RTRALIVNSPHNPTGTVLTAAELAAIAELAVE 190
Query: 190 EKLFLFADEVYQDNVY 205
L + DEVY+ V+
Sbjct: 191 HDLLVITDEVYEHLVF 206
>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
Length = 496
Score = 67.0 bits (163), Expect = 7e-12
Identities = 64/277 (23%), Positives = 126/277 (45%), Gaps = 20/277 (7%)
Query: 28 DDVKQRAQAVLDGCRG----QSVGSYTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVIL 81
D VK+ +A + G + ++ D G++ R+ +A ++ + G D + V++
Sbjct: 65 DWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVM 124
Query: 82 SAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQ 138
S GA+ ++++ L + PG LIP P Y + L +E I S
Sbjct: 125 SGGATGANETIMFCLAD------PGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDN 178
Query: 139 WGLPISELERSITEARKHCNP-RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
+ L + + + +A++ + +++ NP NP G +L K+ + ++++F R+ + L D
Sbjct: 179 FKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVD 238
Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLD 257
E+Y V+A G F S +V+ ++ +++L + MG G R G V + +
Sbjct: 239 EIYAATVFA-GGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGI--VYSFN 295
Query: 258 PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDD 294
V + K S L + L+ L + D +F D+
Sbjct: 296 DSVVSCARKMSSFGLVSSQTQLM-LASMLSDDQFVDN 331
>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase.
Length = 447
Score = 64.5 bits (157), Expect = 4e-11
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG 106
+ D G++ R+ +A ++ + G A D ++L+AGA+ +L ++ D PG
Sbjct: 91 FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGAT-AANELLTFILAD-----PG 144
Query: 107 --VLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEAR-KHCNPRAI 162
+L+P P YP + L ++ + + D S + + LE + EA + R +
Sbjct: 145 DALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGV 204
Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG 222
+I NP NP G + + ++DI+ F R+ + L +DE+Y +V++ S+F S +++ G
Sbjct: 205 LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFS-ASEFVSVAEIVEARG 263
Query: 223 EPYKSMELASFMSCSKGYMGECGLRGG--YS 251
+ + S SK +G G R G YS
Sbjct: 264 YKGVAERVHIVYSLSKD-LGLPGFRVGTIYS 293
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 63.1 bits (154), Expect = 8e-11
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
+VIL GA++ ++ +++ KK VLI P + Y +L F+ E L E
Sbjct: 73 NVILGNGATE----LIFNIVKVTKPKK--VLILAPTFAEYERALKAFDAEIEYAELTEET 126
Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
+ LE I E + + NP NPTGQ+++KE ++ I+ + ++L D
Sbjct: 127 NFAANEIVLE-EIKE-----EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIID 180
Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
E + D + E ++ S L E +K L + +K + GLR GY
Sbjct: 181 EAFMD--FLEENETISMINYL----ENFK--NLIIIRAFTK-FFAIPGLRLGY 224
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 60.8 bits (148), Expect = 5e-10
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
V++ G+ + I+ +++ +E D VLIP P + +Y + E + L E
Sbjct: 78 VLVGNGSDELIELLVRAFVEPGDT----VLIPEPTFSMYEIAAQLAGAEVVKVPLKE--- 130
Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
+ L + + +I + + + + NP NPTG +L +E ++ +++ A E + DE
Sbjct: 131 FRLDLDAILAAIRD-----KTKLVFLCNPNNPTGTLLPREELRALLE-ALPEGGLVVIDE 184
Query: 199 VYQDNVYAEGSKF-YSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
Y + + ++V L +F SK + G GLR GY
Sbjct: 185 AYIEFSPESSLELLKYPPNLIV----------LRTF---SKAF-GLAGLRVGY 223
>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase;
Validated.
Length = 391
Score = 59.4 bits (144), Expect = 1e-09
Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 20/191 (10%)
Query: 23 DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR---DGQPADWQ 77
+P F PD VK+ A+ +D QS YT G+ +R+ A ++ + D P +
Sbjct: 39 EPDFTTPDHVKEAAKRAIDA--NQS--HYTGMAGLLELRQAAADFVKEKYNLDYAPEN-- 92
Query: 78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
+++++ GA++ + + L ++E D VL+P P YP Y + E + +D ++
Sbjct: 93 EILVTIGATEALSASLTAILEPGDK----VLLPAPAYPGYEPIVNLVGAEIV--EIDTTE 146
Query: 138 Q-WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
+ L LE++I E +A+++ P NPTG ++E I+ + + +F+ +
Sbjct: 147 NDFVLTPEMLEKAILEQGD--KLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVIS 204
Query: 197 DEVYQDNVYAE 207
DEVY + Y
Sbjct: 205 DEVYSELTYTG 215
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 58.8 bits (143), Expect = 2e-09
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 78 DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
++L G+ + I+ +++ +E D VL+P P Y +Y S E + LDE
Sbjct: 73 QILLGNGSDEIIELLIRAFLEPGDA----VLVPPPTYSMYEISAKIHGAEVVKVPLDEDG 128
Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
Q I A P+ + + +P NPTG +L++ +I+ +++ E + D
Sbjct: 129 Q------LDLEDILVAIDD-KPKLVFLCSPNNPTGNLLSRSDIEAVLERT-PEDALVVVD 180
Query: 198 EVY 200
E Y
Sbjct: 181 EAY 183
>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase. The four
sequences which make up the seed for this model are not
closely related, although they are all members of the
pfam00155 family of aminotransferases and are more
closely related to each other than to anything else.
Additionally, all of them are found in the vicinity of
genes involved in the biosynthesis of lysine via the
diaminopimelate pathway (GenProp0125), although this
amount to a separation of 12 genes in the case of
Sulfurihydrogenibium azorense Az-Fu1. None of these
genomes contain another strong candidate for this role
in the pathway. Note: the detailed information included
in the EC:2.6.1.17 record includes the assertions that
the enzyme uses the pyridoxal pyrophosphate cofactor,
which is consistent with the pfam00155 family, and the
assertion that the amino group donor is L-glutamate,
which is undetermined for the sequences in this clade.
Length = 350
Score = 58.4 bits (141), Expect = 3e-09
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 39/244 (15%)
Query: 19 QLFD----DPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
+LFD DP+ P R +A++D V Y + G + +R ++ + RR G
Sbjct: 1 RLFDFGTGDPKEPTPPFIR-KALIDAV--PEVSQYPSALGTKALREAISGWFERRFGVKL 57
Query: 75 DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL 133
D V+ SAG+ + I L+ D + + V+ P YP+Y E L
Sbjct: 58 DPDAQVLPSAGSKEAIFH-FPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKL 116
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKL 192
+ + L + ++E+SI E K IV IN P NPTG + +++ I +
Sbjct: 117 KKEDGFLLRLEKVEKSILEETK------IVWINYPHNPTGATAPRSYLKETIAMCREHGI 170
Query: 193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSM------ELASFMSCSKGYMGECGL 246
L +DE Y + Y GEP S + +F S SK G G
Sbjct: 171 ILCSDECYTE--------IYF--------GEPPHSALEVGIENVLAFHSLSK-RSGMTGY 213
Query: 247 RGGY 250
R G+
Sbjct: 214 RSGF 217
>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with
beta-cystathionase and maltose regulon repressor
activities [Amino acid transport and metabolism].
Length = 388
Score = 57.7 bits (140), Expect = 5e-09
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 62 VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL 121
+A + +R + ++ G GI ++ L + DG V+I P YP + ++
Sbjct: 69 IAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDG----VVIQTPVYPPFYNAI 124
Query: 122 AEFNMEQIGYYL-DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
+ I L ++ ++ + LE++ + R + ++ NP NPTG+V TKE +
Sbjct: 125 KLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER----VKLFILCNPHNPTGRVWTKEEL 180
Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
+ I + R + + +DE++ D V G K F + E + + S SK +
Sbjct: 181 RKIAELCLRHGVRVISDEIHADLVL-GGHKHIPFASL----SERFADNSIT-LTSASKTF 234
Query: 241 MGECGLRGGY 250
GL+ Y
Sbjct: 235 -NLAGLKCAY 243
>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional.
Length = 387
Score = 57.3 bits (139), Expect = 8e-09
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 33/201 (16%)
Query: 15 VSLPQLFDDPRFPDDVKQRAQ-AVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP 73
++L Q F D P+DV++ A A+LDG Q Y G+ +R+ VA + +R G
Sbjct: 29 INLGQGFPDDPGPEDVRRAAADALLDG-SNQ----YPPMMGLPELRQAVAAHYARFQGLD 83
Query: 74 ADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYSASLAEFNMEQI 129
D + +V++++GA++ + + L L+E PG VL PLY A L + +
Sbjct: 84 LDPETEVMVTSGATEALAAALLALVE------PGDEVVLFQ----PLYDAYLPL--IRRA 131
Query: 130 G-----YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDII 184
G L E W LP + L + + +A+++ NP NP G+V +E + +
Sbjct: 132 GGVPRLVRL-EPPHWRLPRAALAAAFSP-----RTKAVLLNNPLNPAGKVFPREELALLA 185
Query: 185 KFAHREKLFLFADEVYQDNVY 205
+F R DEV++ V+
Sbjct: 186 EFCQRHDAVAICDEVWEHVVF 206
>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional.
Length = 399
Score = 56.0 bits (135), Expect = 2e-08
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 28/231 (12%)
Query: 54 GIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIP 110
GI+ V +Y + + +V+L G+ DG+ L ++ + PG +L+P
Sbjct: 70 GIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVH-LPMVYAN-----PGDIILVP 123
Query: 111 IPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN-PGN 169
P Y Y + L + + + + I + K ++I+N PGN
Sbjct: 124 DPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAK------MMILNFPGN 177
Query: 170 PTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF------KKVLVEMGE 223
P + ++ +++I FA + + + D Y + Y +G+K SF K+V VE+
Sbjct: 178 PVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAE-FYFDGNKPISFLSVPGAKEVGVEINS 236
Query: 224 PYKSMELASFMSCSKGYM-GECGLRGGYSEV-INLDPGVKAMLHKSISAML 272
KS LA GYM G + ++ N D GV + K+ A L
Sbjct: 237 LSKSYSLA---GSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAAL 284
>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional.
Length = 413
Score = 54.9 bits (132), Expect = 4e-08
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 21 FDDPRFPDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-D 78
FD P F VK+ A QA+ DG + Q Y G+ + +A+ + G D + +
Sbjct: 66 FDGPDF---VKEAAIQAIRDG-KNQ----YARGFGVPELNSAIAERFKKDTGLVVDPEKE 117
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDES 136
V +++G ++ I + + LI PG V++ P Y Y A+L+ + L
Sbjct: 118 VTVTSGCTEAIAATILGLIN------PGDEVILFAPFYDSYEATLSMAGAKIKTVTL-RP 170
Query: 137 KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
+ +P EL+ + T RAI+I P NPTG++ T+E ++ I + F
Sbjct: 171 PDFAVPEDELKAAFTS-----KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFT 225
Query: 197 DEVY 200
DEVY
Sbjct: 226 DEVY 229
>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase.
Length = 468
Score = 53.6 bits (129), Expect = 1e-07
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Query: 43 GQSV----GSYTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSAGASDGIKSVLKLL 96
GQS+ + D G+ + +A+++S G D ++L+AGA+ ++++ L
Sbjct: 72 GQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCL 131
Query: 97 IEDVDGKKPGVLIPIPQYPLYSASLA-EFNMEQIGYYLDESKQWGLPISELERSITEARK 155
E D L+P P YP + L +E + + S + + S LE + +A+K
Sbjct: 132 AEPGDA----FLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQK 187
Query: 156 H-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF 214
+ ++I NP NP G T+ + ++ F + + L +DE+Y V+ F S
Sbjct: 188 LNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS-PGFVSV 246
Query: 215 KKVL 218
+VL
Sbjct: 247 MEVL 250
>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 51.8 bits (124), Expect = 4e-07
Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 36/226 (15%)
Query: 26 FPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGA 85
P++V + Q ++ + V Y D P E +R +A+Y S I
Sbjct: 36 LPEEVIKNIQEIV---KSSQVNIYPD-PTAEKLREELARYCSVV-------PTNIFVGNG 84
Query: 86 SDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISE 145
SD I ++ L + K V+ P P + +YS +I L E + +
Sbjct: 85 SDEIIHLIMLAFIN---KGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTY-----D 136
Query: 146 LERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY 205
+ I + + P+ + + NP NPTG V+ +E DIIK + + + DE Y
Sbjct: 137 VGSFI-KVIEKYQPKLVFLCNPNNPTGSVIERE---DIIKIIEKSRGIVVVDEAY----- 187
Query: 206 AEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYS 251
F + +V++ ++++ + + SK + G GLR GY+
Sbjct: 188 -----FEFYGNTIVDVINEFENLIV--LRTLSKAF-GLAGLRVGYA 225
>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). Every member of this clade is from a
genome which possesses most of the lysine biosynthesis
pathway but lacks any of the known aminotransferases,
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Although there is no experimental characterization of
any of the sequences in this clade, a direct pathway is
known in plants and Chlamydia and the clade containing
the Chlamydia gene is a neighboring one in the same
pfam00155 superfamily so it seems quite reasonable that
these enzymes catalyze the same transformation.
Length = 383
Score = 51.2 bits (123), Expect = 6e-07
Identities = 87/398 (21%), Positives = 145/398 (36%), Gaps = 133/398 (33%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS-AGASDGIKSVLKLLIEDVDGKKPGV 107
Y G+ R+ VA + RR G D + +LS G+ +GI + + D V
Sbjct: 63 YPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDI----V 118
Query: 108 LIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER------SITE--ARKHCNP 159
L+P P YP+Y IG + + +P+ E +I E A+K
Sbjct: 119 LVPDPGYPVYR----------IGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK---A 165
Query: 160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF----- 214
+ + I P NPTG V + +++++FA + + D Y + + +G K SF
Sbjct: 166 KLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSE-ITFDGYKAPSFLEVDG 224
Query: 215 -KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYS----EVI--------NLDPGV 260
K V +E F S SK Y M G R G + ++I N+D GV
Sbjct: 225 AKDVGIE------------FHSLSKTYNM--TGWRIGMAVGNADLIAGLGKVKTNVDSGV 270
Query: 261 -KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCV 319
+A+ + +I+A+ P DV + + +
Sbjct: 271 FQAIQYAAIAAL------------------NGPQDVVKEIRKI----------------- 295
Query: 320 VNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLP 379
++R ++ + I G+ + Y + + +P
Sbjct: 296 ------------------------YQRRRDLLLEALKKI-GIDVEKPKATFYVW--VPVP 328
Query: 380 AKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ 417
EG S +A LLE TG+ + PG GFG+
Sbjct: 329 ---------EGY-TSAEFAARLLEETGVVVTPGVGFGE 356
Score = 31.6 bits (72), Expect = 0.94
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF 500
S +A LE TG+ + PG GFG+ G + R ++ E+L+ + + ++
Sbjct: 333 SAEFAARLLEETGVVVTPGVGFGEY-GEGYIRISLTVPDERLEEAVARIKKL 383
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 50.4 bits (121), Expect = 1e-06
Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 23/189 (12%)
Query: 23 DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
+P F + + QA L + YT + G+ +R +A + ++R G D + ++
Sbjct: 41 EPDFTTAEPIVAAGQAALAAGHTR----YTAARGLPALREAIAGFYAQRYGVDVDPERIL 96
Query: 81 LSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
++ G S + LL++ PG L+ P YP L + +
Sbjct: 97 VTPGGSGALLLASSLLVD------PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSR 150
Query: 139 WGLPISELERSITEARKHCNPR--AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
+ L + +ER H N ++ +P NPTG +L+++ + + + L
Sbjct: 151 YQLTPALVER-------HWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVV 203
Query: 197 DEVYQDNVY 205
DE+Y Y
Sbjct: 204 DEIYHGLTY 212
>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated.
Length = 395
Score = 50.5 bits (121), Expect = 1e-06
Identities = 94/382 (24%), Positives = 151/382 (39%), Gaps = 98/382 (25%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG- 106
Y+ S GI +RR ++++ R D + + I++ G+ +G+ L L D G
Sbjct: 63 YSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAH-LMLATLD-----HGD 116
Query: 107 -VLIPIPQYPL--YSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIV 163
VL+P P YP+ Y A +A + + L E + +ELER+I E+ P+ ++
Sbjct: 117 TVLVPNPSYPIHIYGAVIAGAQVRSVP--LVEGVDF---FNELERAIRESYP--KPKMMI 169
Query: 164 IINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF------KKV 217
+ P NPT Q + E + ++ A R + + D Y D VY +G K S K V
Sbjct: 170 LGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY-DGWKAPSIMQVPGAKDV 228
Query: 218 LVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTV 276
VE F + SK Y M G R G+ V N + V
Sbjct: 229 AVE------------FFTLSKSYNMA--GWRIGFM-VGNPE-----------------LV 256
Query: 277 LALVSLPQLFDDPRF-PDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSR 335
AL + D F P V A A L+G + CV
Sbjct: 257 SALARIKSYHDYGTFTPLQVA--AIAALEGDQ---------QCV---------------- 289
Query: 336 EKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSV 395
+ + + K+R ++ + M P + +MY + ++ P A+ S+
Sbjct: 290 --RDIAEQYKRRRDVLVKGLHEAGWMVEMP-KASMYVWAKIPEPYAAMG---------SL 337
Query: 396 LYAFELLERTGICIVPGAGFGQ 417
+A +LL +C+ PG GFG
Sbjct: 338 EFAKKLLNEAKVCVSPGIGFGD 359
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 50.3 bits (121), Expect = 1e-06
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 133 LDESKQWGLP-ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK 191
L E W LP + EL R + N + I I N NPTG ++ + +++I++ A
Sbjct: 133 LKEENGW-LPDLDELRRLVRP-----NTKLICINNANNPTGALMDRAYLEEIVEIARSVD 186
Query: 192 LFLFADEVY 200
++ +DEVY
Sbjct: 187 AYVLSDEVY 195
Score = 31.1 bits (71), Expect = 1.2
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 448 PSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEF 504
PS + + L+ TG+ +VPG F + G H R E LK L+K EF EF
Sbjct: 318 PSEDFCLKLLKETGVLLVPGNRFD-LEG--HVRIGYCCDTETLKKGLKKLSEFLREF 371
>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
Provisional.
Length = 385
Score = 49.5 bits (119), Expect = 2e-06
Identities = 90/411 (21%), Positives = 147/411 (35%), Gaps = 144/411 (35%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDG---QPADWQDVILSAGASDGIKSVLKLLIEDVDGKKP 105
Y G+ R+ VA + RR G P +VI G+ +GI + + P
Sbjct: 65 YPSYEGMLEFRKAVADWYKRRFGVELDPET--EVISLIGSKEGIAHIPLAFVN------P 116
Query: 106 G--VLIPIPQYPLY--SASLAE---FNM---EQIGYYLDESKQWGLPISELERSITE--A 153
G VL+P P YP+Y A + M E+ G+ LP + +I E A
Sbjct: 117 GDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGF---------LPDLD---AIPEDVA 164
Query: 154 RKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFY 212
+K ++ IN P NPTG V E ++++ FA + + + D Y + + +G K
Sbjct: 165 KK----AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSE-IAYDGYKPP 219
Query: 213 SF------KKVLVEMGEPYKSMELASFMSCSKGY-MG--ECGLRGGYSEVI--------N 255
SF K V +E F S SK Y M G G +++I N
Sbjct: 220 SFLEVPGAKDVGIE------------FHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSN 267
Query: 256 LDPGV-KAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQT 314
+D GV +A+ I+A+ P +V + + +
Sbjct: 268 VDSGVFQAIQEAGIAAL------------------NGPQEVVEELRKI------------ 297
Query: 315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFP 374
Y ++R ++ + + G+ P + Y +
Sbjct: 298 ---------------Y--------------QERRDILVEGLRKL-GLEVEPPKATFYVW- 326
Query: 375 QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
A S +A LL++ G+ + PG GFG+ G +FR
Sbjct: 327 -----------APVPKGYTSAEFATLLLDKAGVVVTPGNGFGE-YGEGYFR 365
Score = 29.9 bits (68), Expect = 3.7
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE 499
S +A L++ G+ + PG GFG+ G +FR + E+++ +E+ ++
Sbjct: 335 SAEFATLLLDKAGVVVTPGNGFGE-YGEGYFRIALTVPDERIEEAVERIKK 384
>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
Length = 388
Score = 49.3 bits (118), Expect = 2e-06
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 25/186 (13%)
Query: 23 DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
+P F P+ V + A L Q YT + G+ +R +A + +RR G + ++
Sbjct: 39 EPDFTAPEPVVEAAARALRRGVTQ----YTSALGLAPLREAIAAWYARRFGLDVAPERIV 94
Query: 81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
++AGAS + L+E D VL+P P YP +A E +
Sbjct: 95 VTAGASAALLLACLALVERGDE----VLMPDPSYPCNRHFVAAA----------EGRPVL 140
Query: 141 LPISELER---SITEARKHCNP--RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
+P ER + + R +++ +P NPTG + + ++ I++ F
Sbjct: 141 VPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTI 200
Query: 196 ADEVYQ 201
DE+YQ
Sbjct: 201 VDEIYQ 206
Score = 29.6 bits (67), Expect = 4.6
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 365 PVQ--GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTY 422
PV GA Y + + +A A S +L G+ +VPG FG
Sbjct: 311 PVMPDGAFYVYAD----CRGVAHPAAGD---SAALTQAMLHDAGVVLVPGRDFGPHAPRD 363
Query: 423 HFR 425
+ R
Sbjct: 364 YIR 366
>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
Length = 402
Score = 49.3 bits (118), Expect = 3e-06
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 20/183 (10%)
Query: 23 DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVI 80
+P F PD +KQ A A ++ RG++ YT G +R+ + + RR+G ++
Sbjct: 42 EPDFDTPDHIKQAAVAAIE--RGET--KYTLVNGTPALRKAIIAKLERRNGLHYADNEIT 97
Query: 81 LSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWG 140
+ GA I L +E D V+IP P + Y + + + E + +
Sbjct: 98 VGGGAKQAIFLALMATLEAGDE----VIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFK 153
Query: 141 LPISELERSITEARKHCNPRAI-VIIN-PGNPTGQVLTKENIQDIIKFAHRE-KLFLFAD 197
L LE +IT PR +I+N P NPTG V ++ ++ + R + + D
Sbjct: 154 LTPEALEAAIT-------PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTD 206
Query: 198 EVY 200
++Y
Sbjct: 207 DIY 209
Score = 46.7 bits (111), Expect = 2e-05
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 337 KQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPS-- 394
+SV KQR N+I G+SC GA Y + A I K EGK
Sbjct: 294 TESV-AVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNC---AGLIGKTTPEGKVLETD 349
Query: 395 ---VLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
VLY LL+ G+ +V G +G P +FR
Sbjct: 350 QDVVLY---LLDSAGVAVVQGTAYGLSP---YFR 377
>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase. This
family of actinobacterial succinyldiaminopimelate
transaminase enzymes (DapC) are members of the pfam00155
superfamily. Many of these genes appear adjacent to
other genes encoding enzymes of the lysine biosynthesis
via diaminopimelate pathway (GenProp0125).
Length = 357
Score = 49.0 bits (117), Expect = 3e-06
Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 54/207 (26%)
Query: 24 PRFPDD----VKQRAQAVLDGCRGQSVGS---------------YTDSP------GIEII 58
P FP D K +A + DG SVG+ D+P G +
Sbjct: 2 PDFPWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAADAPGYPQTWGTPEL 61
Query: 59 RRHVAQYISRRDGQPA-DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYP 115
R + ++ RR G P D V+ G + + + LL G PG V+IP YP
Sbjct: 62 REAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLL-----GLGPGDTVVIPELAYP 116
Query: 116 LY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ 173
Y A LA + D+ + P+ P I + +PGNPTG+
Sbjct: 117 TYEVGALLA--GATPVAA--DDPTELD-PVG--------------PDLIWLNSPGNPTGR 157
Query: 174 VLTKENIQDIIKFAHREKLFLFADEVY 200
VL+ + ++ I+ +A + +DE Y
Sbjct: 158 VLSVDELRAIVAWARERGAVVASDECY 184
>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
Length = 405
Score = 47.0 bits (112), Expect = 1e-05
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG- 106
Y+ S GI +RR A Y +RR G + V+ + G+ +G ++ + + PG
Sbjct: 64 YSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAI------TAPGD 117
Query: 107 -VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS---ELERSITEARKHCNPRAI 162
+L P P YP++ G+ + +P E ++ A +H P+ I
Sbjct: 118 VILCPNPSYPIH----------AFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPI 167
Query: 163 VII--NPGNPTGQVLTKENIQDIIKFAHREKLFLFAD----EVYQDN 203
+I P NPT V + +D++ FA + + + +D E+Y D
Sbjct: 168 ALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG 214
>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase;
Provisional.
Length = 371
Score = 46.7 bits (111), Expect = 2e-05
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 37/228 (16%)
Query: 43 GQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDG 102
+ + Y D G R + + I+ R G PAD +IL G+ D I + + ++
Sbjct: 62 AELLRLYPDPQG-----RALREAIAARTGVPAD--RIILGNGSEDLIAVICRAVL----- 109
Query: 103 KKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN 158
+PG V+ P +PL+ ++ +E++ + G + L ++ A
Sbjct: 110 -RPGDRVVTLYPSFPLHEDYPTMMGARVERV----TVTPDLGFDLDALCAAVARA----- 159
Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
PR ++ NP NP G LT + + ++ E L + DE Y + YA G + S +L
Sbjct: 160 PRMLMFSNPSNPVGSWLTADQLARVLDATPPETL-IVVDEAYAE--YAAGDDYPSALTLL 216
Query: 219 VEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAMLHK 266
G P+ + L +F SK Y G GLR GY + DP + +L +
Sbjct: 217 KARGLPW--IVLRTF---SKAY-GLAGLRVGYG--LVSDPELVGLLDR 256
>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
Reviewed.
Length = 364
Score = 44.5 bits (106), Expect = 9e-05
Identities = 49/207 (23%), Positives = 76/207 (36%), Gaps = 54/207 (26%)
Query: 24 PRFP----DDVKQRAQAVLDGCRGQSVGS---------------YTDSP------GIEII 58
P FP K A A DG SVG+ D+P G +
Sbjct: 8 PDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADAPGYPTTAGTPEL 67
Query: 59 RRHVAQYISRRDGQPADWQDVILSA-GASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYP 115
R + +++RR G +L G+ + + + LL G PG V+IP YP
Sbjct: 68 REAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLL-----GLGPGDVVVIPELAYP 122
Query: 116 LY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ 173
Y A LA + D + G P I + +P NPTG+
Sbjct: 123 TYEVGARLA--GATVVRA--DSLTELGPQ---------------RPALIWLNSPSNPTGR 163
Query: 174 VLTKENIQDIIKFAHREKLFLFADEVY 200
VL ++++ ++ +A + +DE Y
Sbjct: 164 VLGVDHLRKVVAWARERGAVVASDECY 190
>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional.
Length = 527
Score = 43.7 bits (104), Expect = 2e-04
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 47/175 (26%)
Query: 109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELER----SITEARKHCNPRAIVI 164
+ IP+ L +++E + DE +W P SELE+ SI +A+ +
Sbjct: 204 LEIPE-------LPRYDLEVVHINADEENEWQYPDSELEKLRDPSI---------KALFL 247
Query: 165 INPGNPTGQVLTKEN---IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEM 221
+NP NP ++ E+ I DI+ R L + D+VY + + F S VL
Sbjct: 248 VNPSNPPSVAMSDESLEKIADIVN-EKRPDLMIITDDVY--GTFVDD--FRSLFAVL--- 299
Query: 222 GEPYKSMELASFMSCSKGYMGECGLRGG---------YSEVI-NLDPGVKAMLHK 266
PY ++ + SF SK Y G G R G + ++I L K L K
Sbjct: 300 --PYNTILVYSF---SK-YFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDK 348
>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional.
Length = 386
Score = 43.4 bits (103), Expect = 2e-04
Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 19/184 (10%)
Query: 22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL 81
P P+ ++ A+A D + Y G+ +R A + SR G + V +
Sbjct: 40 GYPPPPELLRALAEAAAD----PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHI 95
Query: 82 SAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIG-YYLD-ESKQW 139
++G + + + L D V++P+P Y + L M I YL +
Sbjct: 96 TSGCNQAFWAAMVTLAGAGDE----VILPLPWYFNHKMWLD---MLGIRPVYLPCDEGPG 148
Query: 140 GLP-ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
LP + E IT RAI ++ P NPTG V E + ++ A R + L DE
Sbjct: 149 LLPDPAAAEALITPR-----TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDE 203
Query: 199 VYQD 202
Y+D
Sbjct: 204 TYRD 207
>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 43.0 bits (102), Expect = 3e-04
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 66 ISRRDGQPADWQDVILSAGASDG-IKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF 124
+S+ G P + ++I+ D I ++++ I+ D V+IP P + Y S
Sbjct: 78 LSKYTGVPVE--NIIVGGDGMDEVIDTLMRTFIDPGDE----VIIPTPTFSYYEISAKAH 131
Query: 125 NMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDII 184
+ + Y + + L + + +ITE + I + P NPTG ++ +E+I+ I+
Sbjct: 132 GAKPV--YAKREEDFSLDVDSVLNAITE-----KTKVIFLCTPNNPTGNLIPEEDIRKIL 184
Query: 185 KFAHREKLFLFADEVYQDNVYAE 207
+ +F DE Y + +AE
Sbjct: 185 E---STDALVFVDEAYVE--FAE 202
>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase. This enzyme,
aspartate 4-decarboxylase (EC 4.1.1.12), removes the
side-chain carboxylate from L-aspartate, converting it
to L-alanine plus carbon dioxide. It is a PLP-dependent
enzyme, homologous to aspartate aminotransferase (EC
2.6.1.1) [Energy metabolism, Amino acids and amines].
Length = 521
Score = 43.1 bits (102), Expect = 3e-04
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 34/176 (19%)
Query: 109 IPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPG 168
+ IP+ P Y + +++ D + W P ELE+ + K A+ ++NP
Sbjct: 198 LEIPELPRYDFEVVRIKADEMTE--DGTHTWQYPDKELEKLRDPSIK-----ALFVVNPS 250
Query: 169 NPTGQVL---TKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPY 225
NP + + E I DI+ R L + D+VY + + F S L PY
Sbjct: 251 NPPSVAMSDESIEKIVDIVA-NDRPDLMILTDDVY--GTFVDD--FRSLFAEL-----PY 300
Query: 226 KSMELASFMSCSKGYMGECGLRGG----YSEVI------NLDPGVKAMLHKSISAM 271
++ + SF SK Y G G R G + + I L K L K S++
Sbjct: 301 NTIGVYSF---SK-YFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSL 352
>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
This family contains pyridoxal phosphate-binding class
II aminotransferases (see pfam00222) closely related to,
yet distinct from, histidinol-phosphate aminotransferase
(HisC). It is found in cobalamin biosynthesis operons in
Salmonella typhimurium and Bacillus halodurans (each of
which also has HisC) and has been shown to have
L-threonine-O-3-phosphate decarboxylase activity in
Salmonella. Although the gene symbol cobD was assigned
in Salmonella, cobD in other contexts refers to a
different cobalamin biosynthesis enzyme, modeled by
pfam03186 and called cbiB in Salmonella [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 330
Score = 42.2 bits (100), Expect = 4e-04
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 31/143 (21%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-VLIPIPQYPLYSASLAEF 124
+ G PA V+ GA + I + +LL PG VL+ P Y +E
Sbjct: 56 AAAYYGLPAAS--VLPVNGAQEAIYLLPRLL-------APGRVLVLAPTY-------SE- 98
Query: 125 NMEQIGYYLDESKQWG---LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ 181
Y + G + + +L+R + +V+ NP NPTG+++ E +
Sbjct: 99 -------YARAWRAAGHEVVELPDLDRLPAALEEA---DLLVVCNPNNPTGRLIPPETLL 148
Query: 182 DIIKFAHREKLFLFADEVYQDNV 204
+ +L DE + D
Sbjct: 149 ALAARLRARGGWLVVDEAFIDFT 171
>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
Length = 405
Score = 42.1 bits (99), Expect = 5e-04
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 24/207 (11%)
Query: 39 DGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGASDGIKSVLKLLI 97
G V +YT+ G IR +A ++ G P D D +I++ G + L L +
Sbjct: 64 AGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGT----QGALFLAV 119
Query: 98 EDVDGKKPGVLIPIPQYPLYSASLAEF---NMEQIGY-YLDESKQWGLPISELERSITEA 153
+ V I P Y + L EF M + YL K+ GL + +LE EA
Sbjct: 120 AATVARGDKVAIVQPDY-FANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLE----EA 174
Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYS 213
K R + NP NP G V + E I I A R + D++Y +Y +G+ +
Sbjct: 175 FKA-GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY-DGTSYTH 232
Query: 214 FK-------KVLVEMGEPYKSMELASF 233
+ V+ MG P K+ L+ +
Sbjct: 233 LRALPIDPENVITIMG-PSKTESLSGY 258
>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase. Members of this
subfamily are probable C-S lyases from a family of
pyridoxal phosphate-dependent enzymes that tend to be
(mis)annotated as probable aminotransferases. One member
is PatB of Bacillus subtilis, a proven C-S-lyase.
Another is the virulence factor cystalysin from
Treponema denticola, whose hemolysin activity may stem
from H2S production. Members of the seed alignment occur
next to examples of the enzyme 5-histidylcysteine
sulfoxide synthase, from ovothiol A biosynthesis, and
would be expected to perform a C-S cleavage of
5-histidylcysteine sulfoxide to leave
1-methyl-4-mercaptohistidine (ovothiol A).
Length = 384
Score = 41.5 bits (98), Expect = 6e-04
Identities = 32/147 (21%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 62 VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL 121
V ++++R G D + ++ G + + ++ L +G V++ P YP + +++
Sbjct: 69 VINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRALTAPGEG----VIVQTPVYPPFLSAV 124
Query: 122 AEFNMEQIGYYLDE-SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
E + L ++ + +LE +ITE R +++ +P NP G+V T+E +
Sbjct: 125 KSNGRELVLNPLKLDPGRYRFDLEDLEDAITE-----KARLLLLCSPHNPVGRVWTREEL 179
Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAE 207
+ + R + + +DE++ D VY
Sbjct: 180 TRLAELCLRHNVVVVSDEIHADLVYPP 206
>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 41.6 bits (98), Expect = 7e-04
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 137 KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
+ L +E++IT RAIV I+P NPTG V + ++ + + ++ +
Sbjct: 144 DNYQLQPEAIEQAITP-----KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHIS 198
Query: 197 DEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
DE Y+ Y +G K +S + P S S SK Y G R GY
Sbjct: 199 DEAYEYFTY-DGVKHFSPGSI------PGSGNHTISLYSLSKAY-GFASWRIGY 244
>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase;
Provisional.
Length = 354
Score = 40.8 bits (96), Expect = 0.001
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 77 QDVILSAGASDGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYSASLAEFNMEQIGYYL 133
+ ++ S GA + I+ +++ E PG + P Y +Y+ S FN+ L
Sbjct: 78 EQILTSRGADEAIELLIRAFCE------PGQDSIACFGPTYGMYAISAETFNVGVKALPL 131
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK 185
+ LP+ +E+ + + I NP NPTG V+ + +I+ +I+
Sbjct: 132 TA--DYQLPLDYIEQL-------DGAKLVFICNPNNPTGTVIDRADIEQLIE 174
>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This
family of succinyldiaminopimelate transaminases (DapC)
includes the experimentally characterized enzyme from
Bordatella pertussis. The majority of genes in this
family are proximal to genes encoding components of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125).
Length = 393
Score = 40.1 bits (94), Expect = 0.002
Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 46 VGSYTDSPGIEIIRRHVAQYISRRDGQPA--DWQDVILSA-GASDGIKSVLKLLIEDVDG 102
+ +Y + G+ +R+ +A+++ RR P D + +L G + + + + +I
Sbjct: 57 LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQ- 115
Query: 103 KKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR 160
P V++P P Y +Y +A LA Y+L+ + + G + + + + C +
Sbjct: 116 -APLVVMPNPFYQIYEGAALLAGAEP----YFLNCTAENGF-LPDFDAVPESVWRRC--Q 167
Query: 161 AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
+ + +PGNPTG VL+ + ++ +I+ A + + +DE Y
Sbjct: 168 LLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECY 207
>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase. Members of this
family are the enzyme capreomycidine synthase, which
performs the second of two steps in the biosynthesis of
2S,3R-capreomycidine from arginine. Capreomycidine is an
unusual amino acid used by non-ribosomal peptide
synthases (NRPS) to make the tuberactinomycin class of
peptide antibiotic. The best characterized member is
VioD from the biosynthetic pathway for viomycin
[Cellular processes, Biosynthesis of natural products].
Length = 359
Score = 39.8 bits (93), Expect = 0.003
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Query: 51 DSP--GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-- 106
D P G E +R I+ R D V+ + G+S+ I VL L+ PG
Sbjct: 47 DGPSLGGEGLR----AAIADRWR-GGDAHVVMTTHGSSEAIYLVLTALLR------PGDE 95
Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN 166
V++ P Y S E + L + + + L +T RA+V+
Sbjct: 96 VVVVDPAYHSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTP-----RTRAVVVNF 150
Query: 167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVY 205
P NPTG +T + ++++ A R L D + D V+
Sbjct: 151 PHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVH 189
>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional.
Length = 394
Score = 38.5 bits (90), Expect = 0.007
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 105 PG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAI 162
PG VL+P P YP + + L W + +S + + + K I
Sbjct: 120 PGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK------I 173
Query: 163 VIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
+ N P NPT +E ++I+ FA + ++ L D Y
Sbjct: 174 LYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCY 212
Score = 30.8 bits (70), Expect = 1.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 446 KCP----SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFRE 499
CP S +A L++TG+ + PG FG G + R +++ ++L L++ ++
Sbjct: 332 PCPVGMGSTDFALNVLQKTGVVVTPGNAFG-EGGEGYVRISLIADCDRLGEALDRLKQ 388
Score = 29.3 bits (66), Expect = 5.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 391 KCP----SVLYAFELLERTGICIVPGAGFGQ 417
CP S +A +L++TG+ + PG FG+
Sbjct: 332 PCPVGMGSTDFALNVLQKTGVVVTPGNAFGE 362
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 38.4 bits (90), Expect = 0.007
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 141 LPISELERSI-TEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
L ++E +I + H V+ N G V + ++ I L L D
Sbjct: 112 LTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMD 169
>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
Length = 403
Score = 38.1 bits (89), Expect = 0.008
Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG- 106
Y+ S GI +R + + R+ D + +V+ + G+ +G +++ + PG
Sbjct: 67 YSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT------NPGD 120
Query: 107 -VLIPIPQYPLYSAS--LAEFNMEQIG------YYLDESKQWGLPISELERSITEARKHC 157
++P P YP++S + LA N+ ++ + LDE + + LE+++ E+
Sbjct: 121 VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFF----ENLEKALRESSP-- 174
Query: 158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
P+ +V+ P NPT + K + ++ A +E+ ++ +D Y D
Sbjct: 175 KPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYAD 219
>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 38.0 bits (89), Expect = 0.009
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 24/128 (18%)
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
V++S GA +GI+ +++ E PG +L P Y +YS S E IG +
Sbjct: 77 VLVSRGADEGIELLIRAFCE------PGKDAILYCPPTYGMYSVS-----AETIGVEIRT 125
Query: 136 ---SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKL 192
W L + + ++ + + + +P NPTG ++ ++++ +++ R K
Sbjct: 126 VPTLDNWQLDLPAIADNLD------GVKVVYVCSPNNPTGNLINPQDLRTLLELT-RGKA 178
Query: 193 FLFADEVY 200
+ ADE Y
Sbjct: 179 IVVADEAY 186
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 38.2 bits (89), Expect = 0.009
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 66 ISRRDGQP-ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEF 124
I+ D + D +++ +S GA + + L D V + P YP Y S
Sbjct: 84 IAENDYRGRIDPEEIFISDGAKCDVFRLQSLFGPDNT-----VAVQDPVYPAYLDSNV-- 136
Query: 125 NMEQIGYYLDESKQWG----LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
M LD+ ++ LP + I E + + I + +P NPTG VLTKE +
Sbjct: 137 -MAGRAGVLDDDGRYSKITYLPCTAENNFIPELPEEPHIDIIYLCSPNNPTGTVLTKEQL 195
Query: 181 QDIIKFAHREKLFLFADEVY 200
++++ +A+ + D Y
Sbjct: 196 KELVDYANEHGSLILFDAAY 215
>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
Length = 384
Score = 37.8 bits (88), Expect = 0.010
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 31/192 (16%)
Query: 24 PRFPDD---VKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD-WQDV 79
P F D V+ A+A+ DG Y GI +R +A+ R G D +V
Sbjct: 39 PNFAPDPALVEGVARAMRDGH-----NQYAPMAGIAALREALAEKTERLYGARYDPASEV 93
Query: 80 ILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESK 137
+ A AS+G+ + + L+ PG V+ P + Y+ + L +
Sbjct: 94 TVIASASEGLYAAISALVH------PGDEVIYFEPSFDSYAPIVR----------LQGAT 137
Query: 138 QWGLPISELERSIT--EARKHCNPRA-IVIIN-PGNPTGQVLTKENIQDIIKFAHREKLF 193
+ +S + + E PR ++I+N P NP+ V + ++ + + +
Sbjct: 138 PVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIV 197
Query: 194 LFADEVYQDNVY 205
+ +DEVY+ V+
Sbjct: 198 ILSDEVYEHVVF 209
>gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated.
Length = 360
Score = 37.3 bits (87), Expect = 0.013
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 107 VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIIN 166
V + P + Y +L F L + L+ T + +++ N
Sbjct: 100 VYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQ---TLPPQLTPNDGLLLNN 156
Query: 167 PGNPTGQVLTKENIQ 181
P NPTG++ ++E I
Sbjct: 157 PHNPTGKLWSREAIL 171
>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional.
Length = 356
Score = 37.4 bits (87), Expect = 0.014
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 53 PGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG-VLIPI 111
P +E RH+ Q ++R PA W ++ G ++ I +V V G KP +I
Sbjct: 53 PDVEY--RHLHQALARHHQVPASW--ILAGNGETESIFAV-------VSGLKPRRAMIVT 101
Query: 112 PQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT 171
P + Y +L + E Y L E+ W +L +I EA + + + P NPT
Sbjct: 102 PGFAEYRRALQQVGCEIRRYSLREADGW-----QLTDAILEALTP-DLDCLFLCTPNNPT 155
Query: 172 GQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
G + ++ +Q I + + L DE + D
Sbjct: 156 GLLPERQLLQAIAERCKSLNIALILDEAFID 186
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 36.8 bits (86), Expect = 0.022
Identities = 43/203 (21%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 15 VSLPQLFDDPRFPDDVKQR-AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP 73
++L Q F D P + + A A+ G Q Y G+ +R +A +R G+
Sbjct: 33 INLSQGFPDFDGPPYLVEALAYAMAAG-HNQ----YPPMTGVAALREAIAAKTARLYGRQ 87
Query: 74 ADW-QDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLY--SASLA-----E 123
D ++ ++AGA++ + + + L+ +PG V++ P Y Y + LA
Sbjct: 88 YDADSEITVTAGATEALFAAILALV------RPGDEVIVFDPSYDSYAPAIELAGGRAVR 141
Query: 124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI 183
++ + +D W +I+ R I++ P NP+G V + +++ +
Sbjct: 142 VALQPPDFRVD----W----QRFAAAISP-----RTRLIILNTPHNPSGTVWSAADMRAL 188
Query: 184 IKFAHREKLFLFADEVYQDNVYA 206
+ +++ +DEVY+ V+
Sbjct: 189 WQLIAGTDIYVLSDEVYEHIVFD 211
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 36.3 bits (84), Expect = 0.030
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFL--------FADEVYQDNVYA-EG 208
N R I +I+P NP G T+E I++ + A FL FA E YA E
Sbjct: 157 NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEH 216
Query: 209 S-KFYSFKKVL 218
+ YSF K+
Sbjct: 217 TVTSYSFSKIF 227
>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional.
Length = 410
Score = 36.2 bits (84), Expect = 0.037
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 162 IVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKV--L 218
++ +N P NPTG V TKE ++++ FA + + D Y + K SF V
Sbjct: 182 LLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTF--DGKPLSFLSVPGA 239
Query: 219 VEMGEPYKSMELASFMSCSKGY 240
E+G +E+ S SK Y
Sbjct: 240 KEVG-----VEIHSL---SKAY 253
>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase;
Provisional.
Length = 396
Score = 36.0 bits (84), Expect = 0.039
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 39/189 (20%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA-DWQDVILSA-G 84
P +K A LDG + SY + G+ +R +A ++ RR G PA D +L G
Sbjct: 44 PAFIKDALAANLDG-----LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNG 98
Query: 85 ASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIG---YYL--DESK 137
+ + + + + +I D DG P V+ P P Y +Y +A LA G Y+L D +
Sbjct: 99 SREALFAFAQTVI-DRDGPGPLVVCPNPFYQIYEGAALLA-------GAEPYFLNCDPAN 150
Query: 138 QWG-----LPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREK 191
+ +P R+ ++ + +PGNPTG VL ++ + + + R
Sbjct: 151 NFAPDFDAVPAEVWART-----------QLLFVCSPGNPTGAVLPLDDWKKLFALSDRYG 199
Query: 192 LFLFADEVY 200
+ +DE Y
Sbjct: 200 FVIASDECY 208
>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
Length = 389
Score = 34.9 bits (81), Expect = 0.084
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 105 PG--VLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQWGLP-ISELERSITEARKHCNP 159
PG +L+P P YP Y +LA E + L + LP +++ + E K
Sbjct: 117 PGDTILVPDPGYPDYLSGVALARAQFETMP--LIAENNF-LPDYTKIPEEVAEKAK---- 169
Query: 160 RAIVIIN-PGNPTGQVLTKENIQDIIKFA 187
++ +N P NPTG V TK ++ + FA
Sbjct: 170 --LMYLNYPNNPTGAVATKAFFEETVAFA 196
>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
Length = 416
Score = 34.8 bits (81), Expect = 0.092
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 34 AQAVLDGCRGQSVGSYTDSP-GIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSV 92
A + G +++G+Y D P G + + +A ++ R G Q++ L+ G+ +
Sbjct: 55 ADLLASGKLTEALGNY-DGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYL 113
Query: 93 LKLLI-EDVDGKKPGVLIPI-PQYPLYS-ASLAE--F-----NMEQIG-----YYLDESK 137
L DG +L P+ P+Y Y+ A L E F N+E + Y++D
Sbjct: 114 FNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEH 173
Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
L I E + AI + P NPTG VLT E ++ + A + + L D
Sbjct: 174 ---LHIDE------------DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLID 218
Query: 198 EVY 200
Y
Sbjct: 219 NAY 221
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 34.5 bits (80), Expect = 0.093
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 141 LPISELERSITE--ARKHCNPRAIVIINPGN-PTGQVLTKENIQDIIKFAHREKLFLFAD 197
L + +LE +I I + N N GQV++ E +++I A + L D
Sbjct: 109 LDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLD 168
>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 34.2 bits (79), Expect = 0.15
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKV 217
+ + I NP NPTG + E + ++ L + DE Y + V AE
Sbjct: 151 QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVL-DEAYYEYVTAED------YPD 203
Query: 218 LVEMGEPYKS-MELASFMSCSKGYMGECGLRGGY 250
+ + E Y++ + L +F SK Y G LR GY
Sbjct: 204 TLPLLEKYENLIVLRTF---SKAY-GLAALRVGY 233
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 34.2 bits (79), Expect = 0.16
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 18/146 (12%)
Query: 55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQY 114
E R VA++++ +D ++ + G ++ + V + L +++ ++
Sbjct: 68 YEAAREAVARFLN---ADSSDE--IVFTRGTTEALNLVARGL-GRSLKPGDEIVVSDLEH 121
Query: 115 PLYSASLAEFNMEQIGY---YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT 171
+ ++ G + L + LE+ IT + + + + N T
Sbjct: 122 HSNIVPW-QELAKRTGAKVRVIPLDDDGLLDLDALEKLITP-----KTKLVALSHVSNVT 175
Query: 172 GQVLTKENIQDIIKFAHREKLFLFAD 197
G V +++I + AH + D
Sbjct: 176 GTVN---PVKEIAELAHEHGALVLVD 198
>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase;
Validated.
Length = 332
Score = 33.7 bits (77), Expect = 0.22
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
LP + + + E + N I I++P NP G +++++++ I + ++ LF DE +
Sbjct: 106 LPFNLINNN-PEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAF 164
Query: 201 QDNV--YAE 207
D V AE
Sbjct: 165 IDFVPNRAE 173
>gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase;
Provisional.
Length = 337
Score = 33.2 bits (76), Expect = 0.27
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 158 NPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKV 217
N A+ I +P NPTG + + ++I+K K V D YAE S S +
Sbjct: 140 NASAVFICSPNNPTGNL---QPEEEILKVLETGK------PVVLDEAYAEFSG-KSLIGL 189
Query: 218 LVEMGEPYKSM-ELASFMSCSKGYMGECGLRGGY 250
+ E Y ++ L +F SK + G G+R GY
Sbjct: 190 IDE----YPNLILLRTF---SKAF-GLAGIRAGY 215
>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional.
Length = 374
Score = 33.5 bits (77), Expect = 0.27
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 17/72 (23%)
Query: 162 IVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAE------------- 207
+VI+N P NPTG+ L+ E + + +K A + L DE Y + +Y
Sbjct: 158 LVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSE-IYENTPPPSLLEASILV 216
Query: 208 GSKFYSFKKVLV 219
G++ SFK VLV
Sbjct: 217 GNE--SFKNVLV 226
>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
Validated.
Length = 409
Score = 33.3 bits (77), Expect = 0.28
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 167 PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY----QDN-----VYA-EGSK-----F 211
P NPTG VLTKE ++ + +A + D Y D +Y EG++ F
Sbjct: 185 PNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEF 244
Query: 212 YSFKK 216
SF K
Sbjct: 245 RSFSK 249
Score = 29.8 bits (68), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 400 ELLERTGICIVPGAGFGQVPGTYHFR 425
+LL+ + PG+GFG G +FR
Sbjct: 364 KLLQEANVVGTPGSGFGP-SGEGYFR 388
Score = 29.1 bits (66), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEK-LKAM 493
L+ + PG+GFG G +FR + E L+AM
Sbjct: 366 LQEANVVGTPGSGFGP-SGEGYFRLSAFGSRENVLEAM 402
>gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase;
Provisional.
Length = 335
Score = 33.0 bits (75), Expect = 0.34
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 162 IVIINPGNPTGQVLTKENIQDIIK----FAHREKLFLFADEVYQD 202
+ I NP NPTG V +E I+ I+K A E + F E Y D
Sbjct: 142 VFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVD 186
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 32.4 bits (74), Expect = 0.53
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 137 KQWGL--------PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
K+W + + +E++IT N +AI I P NP Q +I I K A
Sbjct: 112 KKWNVRFVYVNTASLKAIEQAITP-----NTKAIFIETPTNPLMQET---DIAAIAKIAK 163
Query: 189 REKLFLFAD 197
+ L L D
Sbjct: 164 KHGLLLIVD 172
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 31.6 bits (72), Expect = 0.77
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 23/130 (17%)
Query: 77 QDVILSAGASDGIKSVLKLL-IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
+ ++++AG ++ L L+ I + +K V+IP Y Y F I D
Sbjct: 55 EPIVITAGITEA----LYLIGILALRDRK--VIIPRHTYGEYERVARFFAARIIKGPNDP 108
Query: 136 SKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKLFL 194
K LE + ++V NP NP G+ + ++ ++ L
Sbjct: 109 EK--------LEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALL 153
Query: 195 FADEVYQDNV 204
DE + D V
Sbjct: 154 ILDEAFIDFV 163
>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 31.8 bits (73), Expect = 0.94
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 102 GKKPGVLIPIPQYPLYSASLAEFNMEQIGY-YLDESKQWGLPISELERSITEARKHCNPR 160
V I P +P + A +E Y Y D + GL + + A +
Sbjct: 118 FPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETK-GLDFDGMLADLKTAPE----G 172
Query: 161 AIVIINP--GNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
++V+++ NPTG T+E Q++ L F D YQ
Sbjct: 173 SVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQ 215
>gnl|CDD|173970 cd08205, RuBisCO_IV_RLP, Ribulose bisphosphate carboxylase like
proteins, Rubisco-Form IV. Ribulose bisphosphate
carboxylase (Rubisco) plays an important role in the
Calvin reductive pentose phosphate pathway. It
catalyzes the primary CO2 fixation step. Rubisco is
activated by carbamylation of an active site lysine,
stabilized by a divalent cation, which then catalyzes
the proton abstraction from the substrate ribulose 1,5
bisphosphate (RuBP) and leads to the formation of two
molecules of 3-phosphoglycerate. Members of the Rubisco
family can be divided into 4 subgroups, Form I-IV,
which differ in their taxonomic distribution and
subunit composition. Form I-III have Rubisco activity,
while Form IV, also called Rubisco-like proteins (RLP),
are missing critical active site residues and therefore
do not catalyze CO2 fixation. They are believed to
utilize a related enzymatic mechanism, but have
divergent functions, like for example
2,3-diketo-5-methylthiopentyl-1-phosphate enolase or
5-methylthio-d-ribulose 1-phosphate isomerase.
Length = 367
Score = 31.7 bits (73), Expect = 0.97
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 29 DVKQRAQAVLDGCRGQSVGSYTDSPGI--EIIRRHVAQYIS 67
D +++A+A+ Q+VG++T+ PG EI RHV + S
Sbjct: 13 DAEKKAEAI---ALEQTVGTWTELPGETEEIRERHVGRVES 50
>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase;
Provisional.
Length = 357
Score = 31.3 bits (71), Expect = 1.3
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 35/181 (19%)
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQ 138
V L+ G + + + +++ D VL+P P + Y S A ++ ++ Y
Sbjct: 85 VWLANGGDGALDYLARAMLDPGDT----VLVPDPGFAYYGMS-ARYHHGEVREY------ 133
Query: 139 WGLPISELE------RSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKL 192
P+S+ + ++ +A + R + + +P NPTG + + ++ + + E L
Sbjct: 134 ---PVSKADDFEQTADTVLDA--YDGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETL 188
Query: 193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSE 252
+ DE Y + +AE + V + E ++A + SK Y G GLR GY+
Sbjct: 189 VV-VDEAYGE--FAE-------RPSAVALVEERD--DVAVLRTFSKAY-GLAGLRLGYAV 235
Query: 253 V 253
V
Sbjct: 236 V 236
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 30.3 bits (69), Expect = 2.2
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 152 EARKHCNPR-AIVIINPG-NPTGQVLTKENIQDIIKFAHREKLFLFADEV-----YQDNV 204
K PR +V I N TG V +++I K AH + D +V
Sbjct: 131 ALEKLLTPRTKLVAITHVSNVTGTVN---PVEEIGKLAHEYGALVVVDAAQAVGHRPIDV 187
Query: 205 YAEGSKFYSF 214
A G F +F
Sbjct: 188 QALGVDFLAF 197
>gnl|CDD|233760 TIGR02171, Fb_sc_TIGR02171, Fibrobacter succinogenes paralogous
family TIGR02171. This model describes a paralogous
family of the rumen bacterium Fibrobacter succinogenes.
Eleven members are found in Fibrobacter succinogenes
S85, averaging over 900 amino acids in length. More than
half are predicted lipoproteins. The function is
unknown.
Length = 912
Score = 30.5 bits (69), Expect = 2.5
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 412 GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFG 471
A + PG + +W + A EG + + R G ++P + +G
Sbjct: 726 NAKYLLYPGFVYDENHNFWANGLPTPFVDAVKEGILYPSALRCDYIIR-GRFLLPTSCWG 784
Query: 472 QVPGTYHFRTTILPQ-PEKLKAMLEKFREFHEE 503
P +F TI + + + + F +E
Sbjct: 785 SWPV-ANFDATISDPGQQIINENMNSLKAFIDE 816
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 29.7 bits (67), Expect = 2.6
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 55 IEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQY 114
+E + +A+ + QP + + + + ++ L L+ G V++ +
Sbjct: 2 LEELEEKLARLL-----QPGNDK-AVFVPSGTGANEAALLALL----GPGDEVIVDANGH 51
Query: 115 PLYSASLAEFNMEQIGYY-LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQ 173
AE + +D++ GL ++ LE + N IVI G
Sbjct: 52 GSRYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKP----NVALIVITPNTTSGGV 107
Query: 174 VLTKENIQDIIKFAHREKLFLFADEVYQ 201
++ + I+ I A + L D
Sbjct: 108 LVPLKEIRKI---AKEYGILLLVDAASA 132
>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
Length = 370
Score = 30.0 bits (68), Expect = 2.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 158 NPRA--IVIINPGNPTGQVLTKENIQDIIKFAHREK-LFLFADEVY 200
+P A I I NP NPTG V + +I+ ++ A++ L DE Y
Sbjct: 163 DPNAGLIYICNPNNPTGTVTPRADIEWLL--ANKPAGSVLLVDEAY 206
>gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase;
Validated.
Length = 388
Score = 30.0 bits (68), Expect = 3.0
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 160 RAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLV 219
R +V+ P NPT + Q+ + F + L L D Y D V+ + S +
Sbjct: 167 RLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPS-----I 221
Query: 220 EMGEPYKSMELASFMSCSKGY-MGECGLRGGYS----EVINLDPGVKAML 264
+P KS+ + F + SK Y MG G R G++ ++I VKA++
Sbjct: 222 LQADPEKSVSI-EFFTLSKSYNMG--GFRIGFAIGNAQLIQALRQVKAVV 268
Score = 28.5 bits (64), Expect = 8.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 394 SVLYAFELLERTGICIVPGAGFGQ 417
SV + +L+ +TG+ PG+GFG+
Sbjct: 337 SVEFCTQLVAQTGVAASPGSGFGK 360
>gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase;
Provisional.
Length = 353
Score = 30.1 bits (69), Expect = 3.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 161 AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
I+ NP PTG L I+ I+ A+ + + + DE Y D
Sbjct: 147 GIIFPNPNAPTGIALPLAEIERILA-ANPDSVVVI-DEAYVD 186
>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 30.1 bits (69), Expect = 3.1
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 33/132 (25%)
Query: 136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
+K +G + + ++T R + I NP NPTG L E ++ + + +
Sbjct: 137 AKDYGHDLDAMLAAVTP-----RTRLVFIANPNNPTGTYLPAEEVERFLA-GVPPDVLVV 190
Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS-----FMS--CSKGYMGECGLRG 248
DE Y + Y + +EL + ++ SK Y G GLR
Sbjct: 191 LDEAYAE--YVRRK-------------DYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRV 234
Query: 249 GYS----EVINL 256
GY E+I+
Sbjct: 235 GYGIAPPEIIDA 246
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 29.9 bits (68), Expect = 3.1
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 25 RFPDDVKQRAQAV---LDGCRGQSVGSYTDSPGIEIIRRHVAQYISR 68
F + +A+A+ D +G T + ++I+RRHV +++
Sbjct: 275 EFVARLVAKARALRPGADDIGDADIGPMTTARQLDIVRRHVDDAVAK 321
>gnl|CDD|181765 PRK09294, PRK09294, acyltransferase PapA5; Provisional.
Length = 416
Score = 29.7 bits (67), Expect = 3.6
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 144 SELERSITEARKH---CNPRAIVIINPGNP-----TGQVLTKENIQDIIKFAHREKLFL 194
S ER + + P A V+ PG P T L+K + F R +L +
Sbjct: 174 SGAERFMPAMYAYELPPTPTAAVLAKPGLPQAVPVTRCRLSKAQTSSLAAFGRRHRLTV 232
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 29.9 bits (68), Expect = 3.7
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
+ LE +I N +A+ + P NP +V+ +I+ I K A + + D
Sbjct: 127 LDALEAAIKP-----NTKAVFLETPTNPLLKVV---DIEAIAKIAKKHGALVVVD 173
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 29.7 bits (67), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 161 AIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
AI + P NPTG VLT E + + A + + L D Y
Sbjct: 182 AICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY 221
>gnl|CDD|220778 pfam10487, Nup188, Nucleoporin subcomplex protein binding to Pom34.
This is one of the many peptides that make up the
nucleoporin complex (NPC), and is found across
eukaryotes. The Nup188 subcomplex
(Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six
that make up the NPC, and as such is symmetrically
localised on both faces of the NPC at the nuclear end,
being integrally bound to the C-terminus of Pom34p.
Length = 931
Score = 29.5 bits (66), Expect = 4.9
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 97 IEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDES 136
++ + K P +L P+ Q L + A F + + ++D+
Sbjct: 410 LDIIKAKFPLLLTPLIQLALINDEFAAFEFKDVYSFVDKM 449
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 29.3 bits (66), Expect = 4.9
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 27 PDDVKQ----RAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILS 82
P D+KQ Q ++ R Y D G E +++ +A+Y++ + +S
Sbjct: 43 PPDLKQKLAWLYQQGIESNR------YPDG-GHEALKQAIAEYVNESAAGSSQITPANIS 95
Query: 83 AG-ASDG-IKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAE-FNMEQIGYYLDESKQW 139
G SD I+S LLI G + +L+ P + +Y LA+ + + D +
Sbjct: 96 VGNGSDELIRS---LLIATCLGGEGSILVAEPTFSMY-GILAQTLGIPVVRVGRDPE-TF 150
Query: 140 GLPISELERSITEARKHCNP--RAIVIINPGNPTGQVLTKENI 180
+ ++ + +I + + NP R + +++P +PTG LT +
Sbjct: 151 EIDLAAAQSAIEQTQ---NPPVRVVFVVHPNSPTGNPLTAAEL 190
>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
Length = 352
Score = 29.2 bits (66), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 160 RAIVIINPGNPTGQVLTKE 178
R I + NP NPTG V+T
Sbjct: 147 RLIFVCNPNNPTGTVVTPA 165
>gnl|CDD|227068 COG4724, COG4724, Endo-beta-N-acetylglucosaminidase D [Carbohydrate
transport and metabolism].
Length = 553
Score = 29.1 bits (65), Expect = 6.5
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 429 WWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGI 462
W IAKA G+ P +YA ++ G
Sbjct: 268 WDNAKNDYTIAKANWIGRNPYDVYAGIDVQAGGS 301
>gnl|CDD|233913 TIGR02536, eut_hyp, ethanolamine utilization protein. This family
of proteins is found in operons for the polyhedral
organelle-based degradation of ethanolamine. This family
is not found in proteobacterial species which otherwise
have the same suite of genes in the eut operon.
Proteobacteria have two genes that are not found in
non-proteobacteria which may complement this genes
function, a phosphotransacetylase (pfam01515) and the
EutJ protein (TIGR02529) of unknown function.
Length = 207
Score = 28.3 bits (63), Expect = 7.1
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 90 KSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERS 149
K ++ L+E GK +L P +Y Y + ++ Y ++ + +G+ + E
Sbjct: 81 KFIIAFLLE---GKPIYILKPGIEYSKYENTAPYALKQKFQEYEEKLQSFGIEFIDSENY 137
Query: 150 IT-EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK 185
IT E++K + + + L E D+ K
Sbjct: 138 ITFESKKEEVYGCQKQLRSLSENKKKLITEK--DLKK 172
>gnl|CDD|216146 pfam00843, Arena_nucleocap, Arenavirus nucleocapsid protein.
Length = 533
Score = 28.9 bits (65), Expect = 8.2
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 305 GCRGQSVGQ----TVMDC----VVNPPQP----GEPSYEQFSREKQSVLDSLKQRAKMVA 352
G R Q G+ T +D V PP P G P + ++ + + A
Sbjct: 314 GSRSQIKGRAWDNTTVDLETKPVSGPPPPVRNGGGPRLAGLTYSQEMQVKDAMLKLDPNA 373
Query: 353 DTFNSIEGMSCNPVQGAMY 371
T+ IEG +PV+ A+Y
Sbjct: 374 TTWIDIEGPPNDPVELAIY 392
>gnl|CDD|222530 pfam14082, DUF4263, Domain of unknown function (DUF4263). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea,
eukaryotes and viruses. Proteins in this family are
typically between 244 and 403 amino acids in length.
Length = 162
Score = 28.0 bits (63), Expect = 8.3
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 127 EQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII 165
QI Y + I E + NP+ I+II
Sbjct: 91 SQILDYKRWLDKNYNTIRFEEGKGYNSINITNPKGILII 129
>gnl|CDD|240278 PTZ00119, PTZ00119, 40S ribosomal protein S15; Provisional.
Length = 302
Score = 28.4 bits (63), Expect = 8.6
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 193 FLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME---LASFMSCSKGYMGECGLRGG 249
FL + Y+ V A + K + E Y E L+ GY+G
Sbjct: 25 FLRIAKRYESRVKAHRYTGITAIKTHAQKTEWYLKAERDFLSERNQIPNGYIG----LWQ 80
Query: 250 YSEVINLDPGVKAMLH 265
Y ++ +L + MLH
Sbjct: 81 YDDIKHLRKNIINMLH 96
>gnl|CDD|179214 PRK01060, PRK01060, endonuclease IV; Provisional.
Length = 281
Score = 28.2 bits (64), Expect = 8.9
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 137 KQW-GLPISELERSITEARKHCN-----PRAIV-----IINPGNPTGQVLTK 177
+QW P+ EL +I + C P I+ +IN GNP ++L K
Sbjct: 37 QQWKRKPLEEL--NIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEK 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,490,550
Number of extensions: 2606717
Number of successful extensions: 2952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2869
Number of HSP's successfully gapped: 158
Length of query: 509
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 408
Effective length of database: 6,457,848
Effective search space: 2634801984
Effective search space used: 2634801984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)