RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13922
(509 letters)
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 509 bits (1313), Expect = e-178
Identities = 232/501 (46%), Positives = 295/501 (58%), Gaps = 91/501 (18%)
Query: 10 QVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR 69
QV+AL + P L D P FP+D K+RA+ +L C G S+GSY+ S G+ IR VA YI+RR
Sbjct: 86 QVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRR 145
Query: 70 DGQ-PADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
DG PAD ++ L+ GASDGI ++LK+L+ + GV+IPIPQYPLYSA ++E + Q
Sbjct: 146 DGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQ 205
Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
+ YYLDE W L ++EL R++ EA+ HC+P+ + IINPGNPTGQV +++ I+D+I FA
Sbjct: 206 VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAW 265
Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGECGLR 247
EKLFL ADEVYQDNVY+ +F+SFKKVL EMG Y S +ELASF S SKGYMGECG R
Sbjct: 266 EEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYR 325
Query: 248 GGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
GGY EVINL P +K L K +S LCP V
Sbjct: 326 GGYMEVINLHPEIKGQLVKLLSVRLCPPVS------------------------------ 355
Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
GQ MD VVNPP GE S+EQFSREK+SVL +L ++AK+ D FN + G+ CNP+Q
Sbjct: 356 ----GQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQ 411
Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
GAMYAF P +
Sbjct: 412 GAMYAF-------------------PRI-------------------------------- 420
Query: 428 VWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQP 487
+A+ A+A P + Y + LE TGIC+VPG+GFGQ GTYHFR TILP
Sbjct: 421 ----FIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPV 476
Query: 488 EKLKAMLEKFREFHEEFLAKY 508
EKLK +L+K ++FH FL KY
Sbjct: 477 EKLKTVLQKVKDFHINFLEKY 497
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 501 bits (1292), Expect = e-175
Identities = 190/505 (37%), Positives = 265/505 (52%), Gaps = 97/505 (19%)
Query: 10 QVLALVSLPQLFDDP----RFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQY 65
+VLAL P L F D RA+ +L G++ G+Y+ S GI +R +A
Sbjct: 87 EVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASG 146
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
I+ RDG PA+ D+ L+ GAS G+ +++LLI + +K G+L+PIPQYPLYSAS+A
Sbjct: 147 IASRDGFPANADDIFLTDGASPGVHLMMQLLIRN---EKDGILVPIPQYPLYSASIALHG 203
Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDII 184
+ YYL+ES WGL S++++ + +AR N RA+V+INPGNPTGQVL +EN DI+
Sbjct: 204 GALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIV 263
Query: 185 KFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGEC 244
KF E L L ADEVYQ+N+Y + KF+SFKK++ +G + + L S+ S SKGY GEC
Sbjct: 264 KFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC 323
Query: 245 GLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLD 304
G RGGY E+ V+ ++K S LC +
Sbjct: 324 GKRGGYFEITGFSAPVREQIYKIASVNLCSNIT--------------------------- 356
Query: 305 GCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
GQ + V+NPP+ + SY + EK +L SL +RAK + FN +EG++CN
Sbjct: 357 -------GQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN 409
Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
+GAMY F P +
Sbjct: 410 EAEGAMYVF-------------------PQI----------------------------- 421
Query: 425 RQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTIL 484
Q+AI AKA K P YA LE TGI +VPG+GFGQVPGT+HFR TIL
Sbjct: 422 -------CLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL 474
Query: 485 PQPEKLKAMLEKFREFHEEFLAKYK 509
PQ +K+ A++ +F FHE F+++Y+
Sbjct: 475 PQEDKIPAVISRFTVFHEAFMSEYR 499
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 186 bits (475), Expect = 6e-54
Identities = 88/416 (21%), Positives = 144/416 (34%), Gaps = 87/416 (20%)
Query: 18 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ 77
P +F + +V Q + LD G+ G Y S G R +A Y P + +
Sbjct: 64 PTVFGNLPTDPEVTQAMKDALD--SGKYNG-YAPSIGFLSSREEIASY-YHCPEAPLEAK 119
Query: 78 DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
DVIL++G S I L +L PG +L+P P + LY +E Y L
Sbjct: 120 DVILTSGCSQAIDLCLAVLAN------PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLP 173
Query: 136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
K W + + +LE I E +++ NP NP G V +K ++Q I+ A R+ + +
Sbjct: 174 EKSWEIDLKQLEYLIDE-----KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPIL 228
Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY----S 251
ADE+Y D V+ K+ + + + S +K ++ G R G+
Sbjct: 229 ADEIYGDMVF-SDCKYEP-------LATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHD 279
Query: 252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQS 310
++ L K +L P + Q A +++L
Sbjct: 280 RRDIFGNEIRDGLVKLSQRILGPCTIV------------------QGALKSILCR----- 316
Query: 311 VGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAM 370
T + N L LK A + +I G+ GAM
Sbjct: 317 ---TPGEFYHNT------------------LSFLKSNADLCYGALAAIPGLRPVRPSGAM 355
Query: 371 YAFPQMKLPA-KAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
Y +++ V + L+ + +P F P R
Sbjct: 356 YLMVGIEMEHFPEFEN--------DVEFTERLVAEQSVHCLPATCFE-YPN--FIR 400
Score = 39.5 bits (93), Expect = 0.002
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK 509
+ + +P F P R I + + +EF ++
Sbjct: 380 VAEQSVHCLPATCFE-YPN--FIRVVITVPEVMMLEACSRI----QEFCEQHY 425
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 182 bits (465), Expect = 1e-52
Identities = 68/417 (16%), Positives = 131/417 (31%), Gaps = 85/417 (20%)
Query: 23 DPRFPDDVKQRA-QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD------ 75
+ + + Q Y + G R VA + +
Sbjct: 44 TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV 103
Query: 76 WQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
+V+L +G S GI + + + G L+P P +P Y + + Y
Sbjct: 104 KDNVVLCSGGSHGILMAITAICD------AGDYALVPQPGFPHYETVCKAYGIGMHFYNC 157
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
W + E+ R + + +++ NP NP G ++++++DI++ A +L
Sbjct: 158 RPENDWEADLDEIRRLKDD-----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 212
Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
LF+DE+Y V+ +F + + ++ +K + G R G+
Sbjct: 213 LFSDEIYAGMVFKGKDPNATF----TSVADFETTVPRVILGGTAKNLVV--PGWRLGWLL 266
Query: 251 -SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRG 308
+ P L + + P + Q A L
Sbjct: 267 YVDPHGNGPSFLEGLKRVGMLVCGPCTVV------------------QAALGEALLNTPQ 308
Query: 309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQG 368
+ + Q V +++ A + + G++ +G
Sbjct: 309 EHLDQIV--------------------------AKIEESAMYLYNHIGECIGLAPTMPRG 342
Query: 369 AMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
AMY + I K V + +LLE + ++PG F PG R
Sbjct: 343 AMYLMSR-------IDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-APG--FTR 389
Score = 38.8 bits (91), Expect = 0.003
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK 509
LE + ++PG F PG R T E + +E+ + F ++
Sbjct: 369 LEEENVQVLPGTIFH-APG--FTRLTTTRPVEVYREAVERI----KAFCQRHA 414
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 171 bits (436), Expect = 2e-48
Identities = 93/419 (22%), Positives = 159/419 (37%), Gaps = 98/419 (23%)
Query: 18 PQLFDDPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD 75
P FD F P+ +K+ + G Y DS G+ +R+ + + R++G
Sbjct: 48 PVKFD---FQPPEHMKEAYCKAIK--EGH--NYYGDSEGLPELRKAIVEREKRKNGVDIT 100
Query: 76 WQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
DV ++A ++ ++ + L++ PG +L+P P YP Y+ + + + + Y
Sbjct: 101 PDDVRVTAAVTEALQLIFGALLD------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRT 154
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
E + W I ++ + IT+ +AI +INP NPTG + K+ +++I+ A ++
Sbjct: 155 IEEEDWQPDIDDIRKKITD-----RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIP 209
Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMEL--ASFMSCSKGY-MGECGLRGGY 250
+ +DE+Y Y + S + + ++ SK Y G R GY
Sbjct: 210 VISDEIYDLMTY--EGEHISPGSL---------TKDVPVIVMNGLSKVYFA--TGWRLGY 256
Query: 251 ---SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGC 306
+ N V+ + + LCP A Q A A L G
Sbjct: 257 MYFVDPENKLSEVREAIDRLARIRLCPNTPA------------------QFAAIAGLTGP 298
Query: 307 RGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV 366
MD + + LK+R + N I G+S
Sbjct: 299 ---------MDYLKEY------------------MKKLKERRDYIYKRLNEIPGISTTKP 331
Query: 367 QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
QGA Y FP K + + ++L + V G+GFG+ G HFR
Sbjct: 332 QGAFYIFP----------KIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFR 379
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 136 bits (344), Expect = 2e-35
Identities = 68/385 (17%), Positives = 149/385 (38%), Gaps = 69/385 (17%)
Query: 49 YTDSPGIEIIRRHVAQYISRRDGQPADWQ--DVILSAGASDGIKSVLKLLIEDVDGKKPG 106
+ D G+ R+ +A+++ + G + V+++ GA+ ++++ L + PG
Sbjct: 79 FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD------PG 132
Query: 107 --VLIPIPQYPLYSASLAEFN-MEQIGYYLDESKQWGLPISELERSITEARKH-CNPRAI 162
L+P P YP ++ L ++ I + + S + + ++ + A+K + +
Sbjct: 133 DAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192
Query: 163 VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMG 222
++ NP NP G L K+ ++ ++ F ++ + L DE+Y V+ + +F S ++L E
Sbjct: 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQE 251
Query: 223 EPYKSMELASFM-SCSKGYMGECGLRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVS 281
Y + +L + S SK G G R G N D V S ++ ++
Sbjct: 252 MTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFN-DDVVNCARKMSSFGLVSTQTQYFLA 309
Query: 282 LPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVL 341
+ D +F D+ + + S +
Sbjct: 310 --AMLSDEKFVDN-----------------------------------FLRESAMR---- 328
Query: 342 DSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFEL 401
L +R K + + G+ C ++ + ++ + ++ + + +
Sbjct: 329 --LGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLR---PLLRESTFDS---EMSLWRVI 379
Query: 402 LERTGICIVPGAGFG-QVPGTYHFR 425
+ + + PG+ F Q PG FR
Sbjct: 380 INDVKLNVSPGSSFECQEPG--WFR 402
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 131 bits (333), Expect = 3e-34
Identities = 68/418 (16%), Positives = 133/418 (31%), Gaps = 111/418 (26%)
Query: 16 SLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPAD 75
+L +LF + L + +Y G ++ V+Q + +
Sbjct: 33 TLEELFA---LSGTNPEDFYKKLQ--GTKL--NYGWIEGSPAFKKSVSQLYTGVK---PE 82
Query: 76 WQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
++ + GA+ VL LIE PG V+ P Y E + +
Sbjct: 83 --QILQTNGATGANLLVLYSLIE------PGDHVISLYPTYQQLYDIPKSLGAEVDLWQI 134
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
+E W + +L + I + I I N NPTG V+ + ++++++ A +
Sbjct: 135 EEENGWLPDLEKLRQLIRP-----TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAY 189
Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
+ +DEVY+ + S +E+ + K + + S SK Y + G+R G+
Sbjct: 190 ILSDEVYRSFSELD---VPSI----IEVYD--KGIAVNSL---SKTYSL--PGIRIGWVA 235
Query: 251 --SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQR-AQAVLDGCR 307
+V + M+C V AQ L +
Sbjct: 236 ANHQVT------DILRDYRDYTMICAGVFD------------------DLVAQLALAHYQ 271
Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
+ + E + ++ ++ +S
Sbjct: 272 ---------EIL-------ERNRHIL-----------EENLAILDQWIEEEPLVSYIRPA 304
Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
+F ++ + P + +LL+ G+ +VPG F G + R
Sbjct: 305 VVSTSFVKIAVDM------------PMEDFCLQLLQEHGVLLVPGNRFE-RDG--YVR 347
Score = 32.9 bits (76), Expect = 0.25
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK 509
L+ G+ +VPG F G + R + E L LEK +FL ++
Sbjct: 327 LQEHGVLLVPGNRFE-RDG--YVRLGFACEQETLIKGLEKL----SQFLRRFD 372
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 132 bits (333), Expect = 7e-34
Identities = 48/407 (11%), Positives = 103/407 (25%), Gaps = 60/407 (14%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P + L G + Y + G+ +++ +++ + + + G+
Sbjct: 59 PQIGIETEIQKLR--EGVA-SIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSM 115
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
G + L P + L + + L E + L
Sbjct: 116 QGCFVSFLVANRTHKN--REYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREK 173
Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
T +I+ NP NPT Q +T E ++ I + A + + + D Y
Sbjct: 174 LESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMD 228
Query: 205 YAEGSKFYSFKKV----LVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPG 259
+ + + + + + + S SK + G R G ++
Sbjct: 229 F-RKDYSHPGEPLYQPSVANYTD--NYILALSS---SKAFSY--AGQRIGV--LMISGKL 278
Query: 260 VKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQ-AVLDGCRGQSVGQTVMDC 318
+ + +S L+ Q A+L C
Sbjct: 279 YEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN----------- 327
Query: 319 VVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
+ S ++ R+ + + FN + N + F
Sbjct: 328 --DGEYNFRDSVIEYGRKARIMKKMFLDNG------FNIVYDKDGNEPLADGFYFT---- 375
Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
+G S + + I +
Sbjct: 376 -------VGYKGM-DSSKLIEKFVRYGMCAITLKTTGSK-RNEAMRI 413
Score = 36.2 bits (84), Expect = 0.023
Identities = 4/51 (7%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 453 AFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEE 503
+ + I + T L + + ++ + + E
Sbjct: 387 IEKFVRYGMCAITLKTTGSK-RNEAMRICTSLLPESQFPDLEKRLQMLNAE 436
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 129 bits (328), Expect = 2e-33
Identities = 83/413 (20%), Positives = 132/413 (31%), Gaps = 106/413 (25%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P+ +R V Y+ S GI +R A Y RR ++V+++ G S
Sbjct: 58 PEVFFERIYENKPE-----VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGS 112
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
+ I ++ PG +L+ P Y Y+A ++ I + + +P
Sbjct: 113 EAILFSFAVIAN------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIP-Q 165
Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
LE I E + IV+ NP NPTG V K+ ++ +++ A R LFL DEVY + V
Sbjct: 166 NLESFINE-----RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV 220
Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFM--------SCSKGY-MGECGLRGGYSEVIN 255
+ +F S S S SK + CG R G +I
Sbjct: 221 F--RGEFASA----------------LSIESDKVVVIDSVSKKFSA--CGARVGC--LIT 258
Query: 256 LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQT 314
+ + + K L P +L Q +L+
Sbjct: 259 RNEELISHAMKLAQGRLAPPLLE------------------QIGSVGLLNLDD------- 293
Query: 315 VMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFP 374
V ++ ++R + V GA Y
Sbjct: 294 --SFF------------------DFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITA 333
Query: 375 QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTY--HFR 425
+ + AE +L F + T + P GF PG R
Sbjct: 334 E-------LPVEDAEEFARWMLTDFNMDGET-TMVAPLRGFYLTPGLGKKEIR 378
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 125 bits (317), Expect = 6e-32
Identities = 72/403 (17%), Positives = 129/403 (32%), Gaps = 94/403 (23%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P + L+ YT + G+ +R+ +A+ G D V+++ G+S
Sbjct: 46 PRGAVEALAKSLE--TDAL--GYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS 101
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPIS 144
G L + G V I P YP Y L + + + +
Sbjct: 102 GGFLLAFTALFD------SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA 155
Query: 145 ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNV 204
+ +++ +P NPTG +L + +I+ A + +DE+Y
Sbjct: 156 DFAGLDL--------AGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIE 207
Query: 205 YAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAM 263
Y +K + +E+ + + + SF SK + M G R G+ ++ + V+ +
Sbjct: 208 Y--EAKAVTA----LELTD--ECYVINSF---SKYFSM--TGWRVGW--MVVPEDQVRVV 252
Query: 264 LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQTVMDCVVNP 322
+ + +C + Q A A LD
Sbjct: 253 ERIAQNMFICAPHAS------------------QVAALAALDC----------------- 277
Query: 323 PQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKA 382
E Q+ LD K K++ + P GA Y +
Sbjct: 278 -----------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYA-------- 318
Query: 383 IAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
S +A E+LE+ G+ + PG F G R
Sbjct: 319 --DVSDLTD-DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLR 358
Score = 32.1 bits (74), Expect = 0.39
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFR 480
S +A E LE+ G+ + PG F G R
Sbjct: 327 SRAFAAEILEKAGVAVTPGLDFDPERGAGTLR 358
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 126 bits (318), Expect = 7e-32
Identities = 78/424 (18%), Positives = 149/424 (35%), Gaps = 80/424 (18%)
Query: 18 PQLFDD---PRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
QL D + + A + + D G+ ++ + +++ G
Sbjct: 48 NQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107
Query: 75 DWQ--DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFN-MEQI 129
+ ++L+AGA+ ++ + L + PG VLIP P YP + L +E +
Sbjct: 108 TFDPNHLVLTAGATSANETFIFCLAD------PGEAVLIPTPYYPGFDRDLKWRTGVEIV 161
Query: 130 GYYLDESKQWGLPISELERSITEARKH-CNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
+ S + + + LE + EA K + +++ NP NP G +T+ + ++ F
Sbjct: 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVE 221
Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFM----SCSKGYMGEC 244
+ + L +DE+Y + F S +VL + ++ E+ + S SK G
Sbjct: 222 DKGIHLISDEIYSGTAF-SSPSFISVMEVLKD-RNCDENSEVWQRVHVVYSLSKDL-GLP 278
Query: 245 GLRGGYSEVINLDPGVKAMLHK-SISAMLC-PTVLALVSLPQLFDDPRFPDDVKQRAQAV 302
G R G + + D V A K S ++ T L ++ D + +
Sbjct: 279 GFRVGA--IYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLS---DKKLTKN-------- 325
Query: 303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS 362
Y + + LKQR K + G+S
Sbjct: 326 ---------------------------YIAENHK------RLKQRQKKLVSGLQKS-GIS 351
Query: 363 CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG-QVPGT 421
C ++ + M+ + E + +++ + I PG+ PG
Sbjct: 352 CLNGNAGLFCWVDMR---HLLRSNTFEA---EMELWKKIVYEVHLNISPGSSCHCTEPG- 404
Query: 422 YHFR 425
FR
Sbjct: 405 -WFR 407
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 126 bits (317), Expect = 3e-31
Identities = 69/416 (16%), Positives = 133/416 (31%), Gaps = 50/416 (12%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR----DGQPADWQDVILS 82
V + + +Y + + Y + D A+ D+ +
Sbjct: 118 DKVVAEWVNGAVAN-------NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPT 170
Query: 83 AGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQ 138
G + I L E+ K G + I P + Y L ++ + ++ + E
Sbjct: 171 EGGTAAIVYAFHSLAENHL-LKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKND 229
Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK-LFLFAD 197
W + +E+E+ + K A++++NP NPT + + I + + L + +D
Sbjct: 230 WEIEPNEIEKLKDPSIK-----ALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISD 284
Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY---SEV 253
EVY V F S V+ PY +M + S+ SK + G R G +E
Sbjct: 285 EVYGAFVP----NFKSIYSVV-----PYNTMLVYSY---SKLFGC--TGWRLGVIALNEK 330
Query: 254 INLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ 313
D + + + + ++ ++ R D + G Q
Sbjct: 331 NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQ--Q 388
Query: 314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF 373
+ + + +R + D + Y+
Sbjct: 389 IMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDT-NTHYYSL 446
Query: 374 PQMKLPAKAIAKAKAEGKCP----SVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
+ A+ I + V + +L E+ G+ +V G GFG PG R
Sbjct: 447 IDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPG--ELR 500
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 121 bits (306), Expect = 2e-30
Identities = 72/420 (17%), Positives = 118/420 (28%), Gaps = 104/420 (24%)
Query: 21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-V 79
+P P + V G +YT+ G IR +A ++ G P D +D +
Sbjct: 51 AHEPT-PGAFDLFSAGVQS--GGVQ--AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGL 105
Query: 80 ILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLY--SASLAEFNMEQI--GYYL 133
I++ G + + + G V I P Y E M + Y
Sbjct: 106 IITPGTQGALFLAVAATVA------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVS 159
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
+ + GL ++ LE + R + NP NP G V + E I I A R
Sbjct: 160 ADETRAGLDLTGLEEAFKA-----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT 214
Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
+ AD++Y Y G+ + + E + + SK + G R G
Sbjct: 215 VIADQLYSRLRY-AGASYTHLRAEAAVDAE--NVVTIMGP---SKTESL--SGYRLGVAF 266
Query: 251 --SEVINLDPGVKAM--LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDG 305
+I M L +I L + Q + D
Sbjct: 267 GSRAII------ARMEKLQ-AIV-SLRAAGYS------------------QAVLRGWFDE 300
Query: 306 CRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNP 365
+ E + + + EG+
Sbjct: 301 A---------PGWM-------EDRIARH-----------QAIRDELLHVLRGCEGVFART 333
Query: 366 VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
Q Y FP++ K + L + G+ + PG F R
Sbjct: 334 PQAGSYLFPRLP---KLAVA--------PAEFVKILRLQAGVVVTPGTEFSP-HTADSVR 381
Score = 27.9 bits (63), Expect = 7.9
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLAKYK 509
+ G+ + PG F R E A + + +Y+
Sbjct: 359 RLQAGVVVTPGTEFSP-HTADSVRLNFSQDHEAAVAAARRI----VTLVERYR 406
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 122 bits (307), Expect = 6e-30
Identities = 82/419 (19%), Positives = 141/419 (33%), Gaps = 60/419 (14%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRH-VAQYISRR---DGQPADWQDVILS 82
+ + +L +Y P + I V QYI R D P++ ++
Sbjct: 119 AAFLHEMVDGILGC-------NYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAV 171
Query: 83 AGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQ 138
G + + + + L + K G V I +P + Y LA++ +E++ D S
Sbjct: 172 EGGTAAMAYIFESLKLNGL-LKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLN 230
Query: 139 WGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFA--HREKLFLFA 196
W P SEL++ A K +NP NP + + +++ + HR L +
Sbjct: 231 WQYPDSELDKLKDPAIK-----IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILT 285
Query: 197 DEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINL 256
D+VY F S + P ++ + SF SK + G G R G
Sbjct: 286 DDVYGTFAD----DFQSLFAIC-----PENTLLVYSF---SKYF-GATGWRLGV------ 326
Query: 257 DPGVKAMLHKS-ISAMLC---PTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG 312
H+ + + + + +K + V D R ++
Sbjct: 327 -----VAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADS-RAVALN 380
Query: 313 QTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC--NPVQGAM 370
T Q S E +LKQ + T GM +
Sbjct: 381 HTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDY 440
Query: 371 YAFPQMK-LPAKAIAKAKAEGKCP---SVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
Y ++ + AK +A +E + F + + TGI ++PG GFG R
Sbjct: 441 YTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRP--SGR 497
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 113 bits (286), Expect = 7e-28
Identities = 86/415 (20%), Positives = 141/415 (33%), Gaps = 127/415 (30%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P + L G++ YTDS GI +R +++ + ++I++ G+S
Sbjct: 44 PKPIVDEGIKSLK--EGKT--HYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSS 99
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGLP 142
G+ L +I+ G VLI P YP Y P
Sbjct: 100 LGLFFALSSIID------DGDEVLIQNPCYPCYKNFIRFLG----------------AKP 137
Query: 143 IS------ELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFA 196
+ LE ++++ +AI+I +P NP G+V+ +E I +FA+ ++ +
Sbjct: 138 VFCDFTVESLEEALSD-----KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIIS 188
Query: 197 DEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYS---- 251
DE+Y VY K YS + E E K++ + F SK Y M G R GY
Sbjct: 189 DEIYNGLVY--EGKCYSAIE-FDENLE--KTILINGF---SKLYAM--TGWRIGYVISND 238
Query: 252 EVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQS 310
E+I +A+L + + ++ Q A +
Sbjct: 239 EII------EAILKLQQNLFISAPTIS------------------QYAALKAFEK----- 269
Query: 311 VGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAM 370
E +E +R ++V G N GA
Sbjct: 270 --------------ETEREINSMIKE-------FDRRRRLVLKYVKDF-GWEVNNPIGAY 307
Query: 371 YAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
Y FP + + A LL+ + + PG GFG G + R
Sbjct: 308 YVFPNIGEDGREFAYK--------------LLKEKFVALTPGIGFGS-KGKNYIR 347
Score = 28.6 bits (65), Expect = 4.5
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 453 AFESLERTGICIVPGAGFGQVPGTYHFR----TTILPQPEKLKAMLEKFREFHEE 503
A++ L+ + + PG GFG G + R + E +K LE+ +EF +
Sbjct: 321 AYKLLKEKFVALTPGIGFGS-KGKNYIRISYANSY----ENIKEGLERIKEFLNK 370
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 112 bits (284), Expect = 2e-27
Identities = 92/412 (22%), Positives = 167/412 (40%), Gaps = 103/412 (25%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
P +K+ A+ LD +G + Y + G+ +R +A+ + +++G AD + +++ GA
Sbjct: 41 PQHIKEYAKEALD--KGLT--HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGA 96
Query: 86 SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYS--ASLAEFNMEQIGYYLDESKQWGL 141
+ L ++ G VLIP P + Y+ LA + + E ++ L
Sbjct: 97 NQAFLMGLSAFLK------DGEEVLIPTPAFVSYAPAVILAG--GKPVEVPTYEEDEFRL 148
Query: 142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
+ EL++ +T+ RA++I +P NPTG VLTK+++++I F L + +DEVY+
Sbjct: 149 NVDELKKYVTD-----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYE 203
Query: 202 DNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY----SEVINL 256
+Y + ++ YS L M E +++ + F SK + M G R G+ S +I
Sbjct: 204 HFIY-DDARHYSIAS-LDGMFE--RTITVNGF---SKTFAM--TGWRLGFVAAPSWII-- 252
Query: 257 DPGVKAM--LHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGCRGQSVGQ 313
+ M CP Q A L R
Sbjct: 253 ----ERMVKFQM--YNATCPVTFI------------------QYAAAKALKDERS----- 283
Query: 314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF 373
V E +++ +R K+V N + G+ +GA Y F
Sbjct: 284 --WKAV-------EEMRKEY-----------DRRRKLVWKRLNEM-GLPTVKPKGAFYIF 322
Query: 374 PQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
P+++ S ++ +L+ + +VPG+ FG+ G + R
Sbjct: 323 PRIR---DTGLT--------SKKFSELMLKEARVAVVPGSAFGK-AGEGYVR 362
Score = 29.0 bits (66), Expect = 3.7
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFR----TTILPQPEKLKAMLEKFREFHEEFLAKYK 509
L+ + +VPG+ FG+ G + R T EKL+ +++ E L + K
Sbjct: 340 LKEARVAVVPGSAFGK-AGEGYVRISYATAY----EKLEEAMDRM----ERVLKERK 387
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 106 bits (268), Expect = 2e-25
Identities = 73/426 (17%), Positives = 132/426 (30%), Gaps = 130/426 (30%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P V + ++ ++ YT + G R +A++++ G + ++ ++ GA+
Sbjct: 50 PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109
Query: 87 DGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYS-------ASLAEFNMEQIGYYLDES 136
+ + L + P +P Y A L E + + +D
Sbjct: 110 ASLSICFRALTS------DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQID-- 161
Query: 137 KQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHR------E 190
LE I + R ++I +P NP+G V ++E I+ + +
Sbjct: 162 ------FDALEERINA-----HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR 210
Query: 191 KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-M-GECGLRG 248
+F+ ADE Y++ VY +G K + + ++ S+ SK + GE R
Sbjct: 211 PIFIIADEPYREIVY-DGIKVPFVT----KYYD--NTLVCYSY---SKSLSLPGE---RI 257
Query: 249 GY----SEVINLDPGVKAMLHKS-ISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAV 302
GY EV + A+ +C L Q+
Sbjct: 258 GYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLF------------------QKMIVKC 299
Query: 303 LDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMS 362
T +++ K+ ++ + I G
Sbjct: 300 QGA--------TGD------------------------INAYKENRDLLYEGLTRI-GYH 326
Query: 363 CNPVQGAMYAFPQMKLPAKAIAKAKAEGKCP---SVLYAFELLERTGICIVPGAGFGQVP 419
C GA Y F K S + + E + IV GFG P
Sbjct: 327 CFKPDGAFYMFV----------------KALEDDSNAFCEKAKEE-DVLIVAADGFG-CP 368
Query: 420 GTYHFR 425
G R
Sbjct: 369 G--WVR 372
Score = 28.3 bits (64), Expect = 6.3
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 11/54 (20%)
Query: 455 ESLERTGICIVPGAGFGQVPGTYHFR----TTILPQPEKLKAMLEKFREFHEEF 504
E + + IV GFG PG R E +K + F + ++++
Sbjct: 350 EKAKEEDVLIVAADGFG-CPG--WVRISYCVDR----EMIKHSMPAFEKIYKKY 396
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 103 bits (258), Expect = 5e-24
Identities = 79/430 (18%), Positives = 145/430 (33%), Gaps = 79/430 (18%)
Query: 15 VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
V+L Q F D PD + Q + + YT + G + + +A + GQ
Sbjct: 31 VNLGQGFPDFPPPDFAVEAFQHAVS--GDFMLNQYTKTFGYPPLTKILASFFGELLGQEI 88
Query: 75 DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFN------ 125
D +V+++ G + + + L++ G V+I P + Y
Sbjct: 89 DPLRNVLVTVGGYGALFTAFQALVD------EGDEVIIIEPFFDCYEPM-TMMAGGRPVF 141
Query: 126 -----MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
L S W L EL T +A+V+ P NP G+V ++E +
Sbjct: 142 VSLKPGPIQNGELGSSSNWQLDPMELAGKFTS-----RTKALVLNTPNNPLGKVFSREEL 196
Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
+ + + + DEVYQ VY +G + S L M E +++ + S K +
Sbjct: 197 ELVASLCQQHDVVCITDEVYQWMVY-DGHQHISIAS-LPGMWE--RTLTIGSA---GKTF 249
Query: 241 MGECGLRGGYSEVINLDPGVKAMLH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA 299
G + G+ V+ D +K + S CPT Q A
Sbjct: 250 -SATGWKVGW--VLGPDHIMKHLRTVHQNSVFHCPTQS-------------------QAA 287
Query: 300 QAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE 359
A + + + QF + +++ + + S+
Sbjct: 288 VAE------------SFEREQLLFRQPSSYFVQFPQA-------MQRCRDHMIRSLQSV- 327
Query: 360 GMSCNPVQGAMYAFPQM-KLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQV 418
G+ QG+ + + K A + + +++ G+ +P + F V
Sbjct: 328 GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV 387
Query: 419 PGTYHFRQQV 428
P HF +
Sbjct: 388 PHQKHFDHYI 397
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 102 bits (257), Expect = 8e-24
Identities = 60/411 (14%), Positives = 116/411 (28%), Gaps = 102/411 (24%)
Query: 26 FP-DDVKQRAQAVLD-GCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSA 83
D + +++ G ++ +Y G + +A + G + Q++ L+
Sbjct: 46 AMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN 105
Query: 84 GASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASL------AEFNMEQIGYYLDESK 137
G+ + L + P P Y F + L
Sbjct: 106 GSQSAFFYLFNLFAGRRADGST-KKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG 164
Query: 138 QWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
Q+ + I E I + P NPTG V+T E + + + A++ + L D
Sbjct: 165 QFKYHVDFEHLHIGEETG-----MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVID 219
Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS------FMSCSKGYMGECGLRGGY- 250
Y G F G + MS SK + G R G
Sbjct: 220 NAY-------GVPFP---------GIIFSEARPLWNPNIILCMSLSKLGLP--GSRCGII 261
Query: 251 ---SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
+ I A+ + + L P + + + +
Sbjct: 262 IANDKTI------TAIANMNGIISLAPGGMG------------------PA--MMCEMIK 295
Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVA--DTFNSIEGMSCNP 365
+ + + +P Y Q + + +A + S E +
Sbjct: 296 RNDLLRLSETVI-------KPFYYQ-------------RVQQTIAIIRRYLSEERCLIHK 335
Query: 366 VQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
+GA++ + I ++ L+ G+ +VPG F
Sbjct: 336 PEGAIFLWL--WFKDLPITTEL----------LYQRLKARGVLMVPGHYFF 374
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 102 bits (257), Expect = 9e-24
Identities = 64/421 (15%), Positives = 134/421 (31%), Gaps = 78/421 (18%)
Query: 21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ-DV 79
+ P++ + A D Q YT G + + +++ S+ + + +V
Sbjct: 49 YHAPKYALNALAAAANSPDPLANQ----YTRGFGHPRLVQALSKLYSQLVDRTINPMTEV 104
Query: 80 ILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFN---------MEQ 128
+++ GA + + + ++ ++ G V+I P + Y +
Sbjct: 105 LVTVGAYEALYATIQGHVD------EGDEVIIIEPFFDCYEPM-VKAAGGIPRFIPLKPN 157
Query: 129 IGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAH 188
S W L +ELE E + I+I P NP G+V+ + ++ +
Sbjct: 158 KTGGTISSADWVLDNNELEALFNE-----KTKMIIINTPHNPLGKVMDRAELEVVANLCK 212
Query: 189 REKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRG 248
+ + +DEVY+ V+ E + L M E +++ + S K + G +
Sbjct: 213 KWNVLCVSDEVYEHMVF-EPFEHIRICT-LPGMWE--RTITIGSA---GKTF-SLTGWKI 264
Query: 249 GYSEVINLDPGVKAMLH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCR 307
G+ + +K + C T + Q A AV
Sbjct: 265 GW--AYGPEALLKNLQMVHQNCVYTCATPI-------------------QEAIAV----- 298
Query: 308 GQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQ 367
+ + + E + S E L + +A + GM+ Q
Sbjct: 299 -------GFETELKRLKSPECYFNSISGE-------LMAKRDYMASFLAEV-GMNPTVPQ 343
Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
G + + + + + + G+ +P + F P +
Sbjct: 344 GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDF 403
Query: 428 V 428
V
Sbjct: 404 V 404
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 102 bits (255), Expect = 1e-23
Identities = 60/409 (14%), Positives = 116/409 (28%), Gaps = 78/409 (19%)
Query: 21 FDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ--PADWQD 78
D + L + Y GIE +R Q + R + + +
Sbjct: 59 NKDGKMFASSLDAMFNDLTP---DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSR 115
Query: 79 VILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYYLDES 136
I++ + G+ V L + +L+P + Y N + Y
Sbjct: 116 PIVTNALTHGLSLVGDLFVN------QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFD 169
Query: 137 KQWGLPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFA-----HRE 190
K L ++ K + I+I+N P NPTG T + + I++
Sbjct: 170 KDGHYTTDSLVEALQSYNKD---KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGT 226
Query: 191 KLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
K+ D+ Y Y E S L + +K + G R G+
Sbjct: 227 KVIAVVDDAYYGLFY-EDVYTQSLFTALTNLHSNAILPIRLD--GATKEF-FAWGFRVGF 282
Query: 251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQS 310
D K + + A + + + +S P QS
Sbjct: 283 MTFGTSDQTTKEV----LEAKVKGLIRSNISSG-----PLP----------------TQS 317
Query: 311 VGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSI---EGMSCNPVQ 367
+ V+ N QF +E + + +LK+R ++ + +
Sbjct: 318 AVKHVLK---NNK--------QFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFN 366
Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
+ ++ E L+++ I ++
Sbjct: 367 SGYFMAIKVH-------DVDPEA------LRKHLIDKYSIGVIALNATD 402
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 98.4 bits (246), Expect = 1e-22
Identities = 62/402 (15%), Positives = 114/402 (28%), Gaps = 100/402 (24%)
Query: 35 QAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLK 94
++ + Y G+ +R+ +++ R +++ +S GA + +L
Sbjct: 57 SSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDA---KEIFISDGAKVDLFRLLS 113
Query: 95 LLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY-LDESKQWGLPISELERSIT 151
P V I P YP Y ++I + + E
Sbjct: 114 FF-------GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDTH--- 163
Query: 152 EARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKF 211
+ + +P NPTG VL K+ ++ I+ +A ++ + D Y + + S
Sbjct: 164 -------IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFIS-DPSLP 215
Query: 212 YSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAML 264
S + +E S SK G+R G++ VI + A
Sbjct: 216 KSIFEIPDARFCAIE------------INSFSKPLGF--AGIRLGWT-VIPQE-LTYADG 259
Query: 265 HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQ 324
H I R T + P Q
Sbjct: 260 HFVIQDWE-------------------------RFL------------STTFNGASIPAQ 282
Query: 325 P-GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAI 383
G + + ++ + ++ + G + A Y + K
Sbjct: 283 EAGVAGLS--ILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWV--KPT---- 333
Query: 384 AKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
+ L I I PG GFG+ G+ R
Sbjct: 334 -----QANISDRDLFDFFLREYHIAITPGIGFGR-SGSGFVR 369
Score = 32.2 bits (74), Expect = 0.41
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF 500
L I I PG GFG+ G+ R + L + E + A E+ +
Sbjct: 347 LREYHIAITPGIGFGR-SGSGFVRFSSLGKREDILAACERLQMA 389
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 98.1 bits (245), Expect = 3e-22
Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 15 VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
V+L Q F D P + Q AQ + G Q Y PG +RR +A R G
Sbjct: 28 VNLGQGFPDEDGPPKMLQAAQDAIAGGVNQ----YPPGPGSAPLRRAIAAQRRRHFGVDY 83
Query: 75 DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGY 131
D + +V+++ GA++ I + + L+E PG VL+ P Y YS +A ++
Sbjct: 84 DPETEVLVTVGATEAIAAAVLGLVE------PGSEVLLIEPFYDSYSPVVAMAGAHRVTV 137
Query: 132 YLD-ESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE 190
L + + + L L R++T RA++I +P NPTG VL+ + I + A
Sbjct: 138 PLVPDGRGFALDADALRRAVTP-----RTRALIINSPHNPTGAVLSATELAAIAEIAVAA 192
Query: 191 KLFLFADEVYQDNVYAEGSKFYSF 214
L + DEVY+ V+ + ++
Sbjct: 193 NLVVITDEVYEHLVF-DHARHLPL 215
Score = 41.1 bits (97), Expect = 7e-04
Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 26/129 (20%)
Query: 313 QTVMDCVVNPPQP--------GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
Q + P QP + L+ R +A I G + +
Sbjct: 260 QYLSYVGGAPFQPAVALALDTEDAWVAALRNS-------LRARRDRLAAGLTEI-GFAVH 311
Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
G + + G S + L E+ G+ +P + F
Sbjct: 312 DSYGTYFLCADPR----------PLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQAS 361
Query: 425 RQQVWWRHY 433
+Q W H
Sbjct: 362 QQADVWNHL 370
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 97.6 bits (244), Expect = 3e-22
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 20/203 (9%)
Query: 15 VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
++L Q F D P +++R + Q Y G++ +R +AQ R G
Sbjct: 33 INLSQGFPDFDGPRYLQERLAHHVAQGANQ----YAPMTGVQALREAIAQKTERLYGYQP 88
Query: 75 DWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGY 131
D D+ ++AGA++ + + + L+ G V+ P Y Y+ ++A
Sbjct: 89 DADSDITVTAGATEALYAAITALVR------NGDEVICFDPSYDSYAPAIALSGGIVKRM 142
Query: 132 YLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREK 191
L + + E ++E R +++ P NP+ V + + + + +
Sbjct: 143 ALQPP-HFRVDWQEFAALLSE-----RTRLVILNTPHNPSATVWQQADFAALWQAIAGHE 196
Query: 192 LFLFADEVYQDNVYAEGSKFYSF 214
+F+ +DEVY+ + S
Sbjct: 197 IFVISDEVYEHINF-SQQGHASV 218
Score = 37.9 bits (89), Expect = 0.005
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 26/120 (21%)
Query: 313 QTVMDCVVNPPQP--------GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
Q + V P Q Y +Q+ ++ + N +
Sbjct: 263 QYLTFSVNTPAQLALADMLRAEPEHYLALPDF-------YRQKRDILVNALNES-RLEIL 314
Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
P +G + A V + L + G+ +P + F P +
Sbjct: 315 PCEGTYFLLVDYS----------AVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKL 364
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 96.2 bits (240), Expect = 1e-21
Identities = 67/398 (16%), Positives = 120/398 (30%), Gaps = 95/398 (23%)
Query: 34 AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
A+ + + Y G + +R +A+ G D DV +S GA I S L
Sbjct: 79 AKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDI-SRL 135
Query: 94 KLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGLPISELERS 149
+++ + + P YP Y S + + + +
Sbjct: 136 QVMFG------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGF 189
Query: 150 ITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGS 209
+ I +P NPTG T+E + +++FA + + D Y +
Sbjct: 190 FPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS--DD 247
Query: 210 KFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKA 262
S ++V +E S S G+R G++ VI +
Sbjct: 248 NPRSIFEIPGAEEVAME------------TASFSNYAGF--TGVRLGWT-VIP--KKLLY 290
Query: 263 MLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNP 322
++ R T + N
Sbjct: 291 SDGFPVAKDF------------------------NRII------------CTCFNGASNI 314
Query: 323 PQPGEPSYEQFSREKQSVLDSL----KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKL 378
Q G + + E + + K+ ++ DTF S+ G + A Y + +
Sbjct: 315 SQAG--ALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVW--VHF 369
Query: 379 PAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
P + S E+LE+T + PG+GFG
Sbjct: 370 PNQ-----------SSWDVFAEILEKTHVVTTPGSGFG 396
Score = 34.5 bits (80), Expect = 0.072
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEF 504
LE+T + PG+GFG G R + E + +F++ ++
Sbjct: 382 LEKTHVVTTPGSGFGP-GGEGFVRVSAFGHRENILEACRRFKQLYKHH 428
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 94.7 bits (236), Expect = 3e-21
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 33/215 (15%)
Query: 15 VSLPQLFDDPRF--PDDVKQR-AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDG 71
V+L Q F P P VK+ ++A Q YT G + + ++ +
Sbjct: 26 VNLGQGF--PDISPPSYVKEELSKAAFIDNMNQ----YTRGFGHPALVKALSCLYGKIYQ 79
Query: 72 QPADWQ-DVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLA------ 122
+ D +++++ GA + + ++ L++ PG V+I +P Y Y +
Sbjct: 80 RQIDPNEEILVAVGAYGSLFNSIQGLVD------PGDEVIIMVPFYDCYEPMVRMAGAVP 133
Query: 123 ---EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKEN 179
+ S W ELE + +AI++ P NP G+V T++
Sbjct: 134 VFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-----KTKAIILNTPHNPLGKVYTRQE 188
Query: 180 IQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSF 214
+Q I + +DEVY+ VY G
Sbjct: 189 LQVIADLCVKHDTLCISDEVYEWLVY-TGHTHVKI 222
Score = 34.2 bits (79), Expect = 0.089
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 10/124 (8%)
Query: 313 QTVMDCVVNPPQP--------GEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCN 364
Q P Q + S+ L+ + + NS+ G+
Sbjct: 267 QNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPI 325
Query: 365 PVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
G + + A + + + + + +P + F HF
Sbjct: 326 VPDGGYFIIADVS-SLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHF 384
Query: 425 RQQV 428
+ V
Sbjct: 385 EKLV 388
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 94.7 bits (236), Expect = 5e-21
Identities = 71/410 (17%), Positives = 123/410 (30%), Gaps = 120/410 (29%)
Query: 34 AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
A+A + Y G +R VA G+ AD ++ +S G+ I +
Sbjct: 92 AKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAAD--EIFISDGSKCDIARIQ 149
Query: 94 KLLIEDVDGKKPG--VLIPIPQYPLYSAS---------LAEFNMEQIGYY-LDESKQWGL 141
+ V + P YP+Y + + I Y + +
Sbjct: 150 MMF-------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHF-F 201
Query: 142 PISELERSITEARKHCNPRA-IVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEV 199
P +L ++ R I+ P NPTG T+ + +++ FA + L D
Sbjct: 202 P--DLSKA---------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAA 250
Query: 200 YQDNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSE 252
Y + + +V +E S SK G+R G++
Sbjct: 251 YALYIS-NPDCPKTIYEIPGADEVAIE------------TCSFSKYAGF--TGVRLGWT- 294
Query: 253 VINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVG 312
V+ A + R +
Sbjct: 295 VVPKA-LKYANGEPVHADWN----------------------------------RVMT-- 317
Query: 313 QTVMDCVVNPPQPG------EPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV 366
T + N Q G ++ +++ K+ A+++ TF + G S
Sbjct: 318 -TCFNGASNIVQAGGLACLQPEGLKEM----NAMIKFYKENAQILKTTFTEM-GFSVYGG 371
Query: 367 QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFG 416
A Y + + P K PS E+LER I PG+G+G
Sbjct: 372 DDAPYIW--VGFPGK-----------PSWDVFAEILERCNIVTTPGSGYG 408
Score = 33.8 bits (78), Expect = 0.14
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEEFLA 506
LER I PG+G+G G R + E + + +F+E + + A
Sbjct: 394 LERCNIVTTPGSGYGP-AGEGFVRASAFGSRENILEAVRRFKEAYGKRNA 442
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 93.5 bits (232), Expect = 1e-20
Identities = 58/412 (14%), Positives = 111/412 (26%), Gaps = 84/412 (20%)
Query: 23 DPRFPD-DVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISR---RDGQP-ADWQ 77
D F + KQ +A SY +P I + + I G A +
Sbjct: 65 DGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDR 124
Query: 78 DVILSAGASDGIKSVLKLLIEDVDGK--KPG--VLIPIPQYPLYSASLAEFNMEQIGYYL 133
++ G + I ++ L ++ P V+ P YP++ EQ Y+
Sbjct: 125 YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--------EQTKYFD 176
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
+ W + ++ +P NP G + R +
Sbjct: 177 KKGYVWAGNAANYVNVSNP-----EQYIEMVTSPNNPEGLL--------------RHAVI 217
Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEV 253
+Y D VY + YK+ E + SK G G R G++ +
Sbjct: 218 KGCKSIY-DMVY-YWPHYTPI---------KYKADEDILLFTMSKFT-GHSGSRFGWALI 265
Query: 254 INLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQ 313
+ +L+ QL R+ VL
Sbjct: 266 KDESV-YNNLLNYMTKNTEGTPRET-----QL------------RSLKVLK--------- 298
Query: 314 TVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAF 373
+ L++R + + + S + + Y
Sbjct: 299 -------EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCN 351
Query: 374 PQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
++ + + A + + ++ + I G GF + R
Sbjct: 352 YFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSR--YVR 401
Score = 34.9 bits (80), Expect = 0.056
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 400 ELLERTGICIVPGAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLER 459
LL+++ ++ +++ + A K E + Y +
Sbjct: 331 ALLDQSDRFSYQELPQ---SEYCNYFRRM---RPPSPSYAWVKCEWEEDKDCYQT--FQN 382
Query: 460 TGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF 500
I G GF + R +++ + ++ ++
Sbjct: 383 GRINTQNGVGFEASSR--YVRLSLIKTQDDFDQLMYYLKDM 421
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 93.6 bits (233), Expect = 1e-20
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 15 VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
++L Q F P + AQ LD V Y+ + G + + + S
Sbjct: 60 INLGQGFFSYSPPQFAIKEAQKALDI---PMVNQYSPTRGRPSLINSLIKLYSPIYNTEL 116
Query: 75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAE------- 123
++V ++ GA++GI S L L+ G V++ P + Y + L
Sbjct: 117 KAENVTVTTGANEGILSCLMGLLN------AGDEVIVFEPFFDQYIPNIELCGGKVVYVP 170
Query: 124 -FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD 182
+++ ++W + + E++IT +A++I P NP G+V T+E +
Sbjct: 171 INPPKELDQRNTRGEEWTIDFEQFEKAITS-----KTKAVIINTPHNPIGKVFTREELTT 225
Query: 183 IIKFAHREKLFLFADEVYQDNVY 205
+ + + + +DEVY+ +
Sbjct: 226 LGNICVKHNVVIISDEVYEHLYF 248
Score = 35.0 bits (81), Expect = 0.057
Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 7/122 (5%)
Query: 313 QTVMDCVVNPPQPGEPSYEQFSREKQSVL---DSLKQRAKMVADTFNSIEGMSCNPVQGA 369
+ +P Q + + + + K+ F+ + G+ +G
Sbjct: 302 TRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGT 360
Query: 370 MYAFP---QMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQ 426
+ ++K+P + K + L+ G+ +P F
Sbjct: 361 YFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAEN 420
Query: 427 QV 428
+
Sbjct: 421 LL 422
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 89.5 bits (223), Expect = 1e-19
Identities = 87/422 (20%), Positives = 151/422 (35%), Gaps = 126/422 (29%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P + + A+A L+ +G++ Y + G +R +AQ + R +G +++++ G
Sbjct: 45 PKHIVEAAKAALE--QGKT--RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGK 100
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYSASLAEFNMEQIGY--------YL 133
I +++ +IE PG V+IP P YP E +
Sbjct: 101 QSIFNLMLAMIE------PGDEVIIPAPFWVSYP-----------EMVKLAEGTPVILPT 143
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
Q+ + ++ ++IT + +V P NPTG V T + ++ I + A L+
Sbjct: 144 TVETQFKVSPEQIRQAITP-----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLW 198
Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
+ +DE+Y+ +Y + ++ S E E +K Y M G R G+
Sbjct: 199 VLSDEIYEKILY-DDAQHLSIGAASPEAYE-----RSVVCSGFAKTYAM--TGWRVGFLA 250
Query: 251 --SEVINLDPGVKAML----HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVL 303
++ KA H S S A Q A
Sbjct: 251 GPVPLV------KAATKIQGH-STS---NVCTFA------------------QYGAIAAY 282
Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
+ DCV + F+ ++ +LD+L N++ G+ C
Sbjct: 283 ENS---------QDCV-------QEMLAAFAERRRYMLDAL-----------NAMPGLEC 315
Query: 364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH 423
GA Y FP + K S+ + ELL++ + VPGA FG
Sbjct: 316 PKPDGAFYMFPSIA---KTGRS--------SLDFCSELLDQHQVATVPGAAFG-ADD--C 361
Query: 424 FR 425
R
Sbjct: 362 IR 363
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 88.2 bits (219), Expect = 5e-19
Identities = 64/430 (14%), Positives = 120/430 (27%), Gaps = 98/430 (22%)
Query: 13 ALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQ 72
A + + + S+ +Y++ G + + +R
Sbjct: 43 AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDW 102
Query: 73 PADWQDVILSAGASDGIKSVLKLL-----------IEDVDGKKPGVLIPIPQYPLYSASL 121
+++ L+ G+ + + L E K +L P+Y YS
Sbjct: 103 NLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162
Query: 122 AEFNM--------EQIGYYLDESK-QWGLPISELERSITEARKHCNPRAIVIINPGNPTG 172
E +++ + +E ++ + LE AI P NPTG
Sbjct: 163 VEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG--RIGAICCSRPTNPTG 220
Query: 173 QVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS 232
VLT E + + + A R + L D Y G F + + ++ S
Sbjct: 221 NVLTDEEMAHLAEIAKRYDIPLIIDNAY-------GMPFPNIIYSDAHLNWDNNTILCFS 273
Query: 233 FMSCSKGYMGECGLRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD 288
SK + G+R G ++VI +A+ + L PT
Sbjct: 274 L---SKIGL--PGMRTGIIVADAKVI------EAVSAMNAVVNLAPTRFG---------- 312
Query: 289 PRFPDDVKQRAQAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRA 348
+ Q + + P Y+ KQ
Sbjct: 313 --------AA--IATPLVANDRIKQLSDNEIK-------PFYQ-------------KQAT 342
Query: 349 KMVA--DTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTG 406
V + + +GA++ + K + ++ L + G
Sbjct: 343 LAVKLLKQALGDYPLMIHKPEGAIFLWLWFK-----------DLPISTLDLYERLKAK-G 390
Query: 407 ICIVPGAGFG 416
IVP F
Sbjct: 391 TLIVPSEYFF 400
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 85.3 bits (212), Expect = 3e-18
Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 27/195 (13%)
Query: 15 VSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA 74
V+L Q F P + + + L Y G+ +R +A+ +
Sbjct: 28 VNLGQGFPSNPPPPFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEFAV------ 76
Query: 75 DWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIG 130
+ + V++++GA++ + +L+ L+ PG V++ P + +Y LA +
Sbjct: 77 EPESVVVTSGATEALYVLLQSLVG------PGDEVVVLEPFFDVYLPDAFLAGAKARLVR 130
Query: 131 YYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE 190
L + L +S LE+++T RA+++ P NPTG V + ++ I + A
Sbjct: 131 LDLTPE-GFRLDLSALEKALTP-----RTRALLLNTPMNPTGLVFGERELEAIARLARAH 184
Query: 191 KLFLFADEVYQDNVY 205
LFL +DEVY + Y
Sbjct: 185 DLFLISDEVYDELYY 199
Score = 33.3 bits (77), Expect = 0.19
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 21/115 (18%)
Query: 313 QTVMDCVVNPPQPGEPSYEQFSREKQSVL---DSLKQRAKMVADTFNSIEGMSCNPVQGA 369
Q P Q G + +R + + ++R ++A ++ G+ +G
Sbjct: 249 QWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGT 307
Query: 370 MYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHF 424
+ ++ AF L+E + ++P + F
Sbjct: 308 YFLMAEL-----------------PGWDAFRLVEEARVALIPASAFYLEDPPKDL 345
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 85.3 bits (212), Expect = 4e-18
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 45/237 (18%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
P + ++ V R + G Y+ S GI +RR ++ + R D + I++ G+
Sbjct: 52 PPHIVEKLCTVAQ--REDTHG-YSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGS 108
Query: 86 SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGL 141
+G+ ++ ++ G +L+P P YP++ +A + L +
Sbjct: 109 KEGLAHLMLATLD------HGDTILVPNPSYPIHIYGAVIAGAQV--RSVPLVPGIDFFN 160
Query: 142 PISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
+ R + ++I+ P NPT Q + + + ++ A + + + D Y
Sbjct: 161 ELERAIRESIPKPR------MMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAY 214
Query: 201 QDNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
D VY +G K S K + VE F + SK Y M G R G+
Sbjct: 215 ADIVY-DGWKAPSIMQVPGAKDIAVE------------FFTLSKSYNMA--GWRIGF 256
Score = 49.5 bits (119), Expect = 1e-06
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER 404
+QR ++ G + +MY + K+P + S+ +A +LL+
Sbjct: 305 QQRRDVLVKGLREA-GWMVENPKASMYVWA--KIP-------EPYAHLGSLEFAKKLLQD 354
Query: 405 TGICIVPGAGFGQ 417
+ + PG GFG
Sbjct: 355 AKVSVSPGIGFGD 367
Score = 32.2 bits (74), Expect = 0.36
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 457 LERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREFHEE 503
L+ + + PG GFG G H R ++ ++L+ + +
Sbjct: 352 LQDAKVSVSPGIGFGD-YGDDHVRFALIENRDRLRQAVRGIKAMFRA 397
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 84.9 bits (211), Expect = 5e-18
Identities = 83/419 (19%), Positives = 146/419 (34%), Gaps = 129/419 (30%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P+ V + A L +G+ YTD GI +R +A+ I R + V+++ GA
Sbjct: 56 PEPVVEEAVRFLQ--KGEV--KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAK 111
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLP 142
+ + L++ PG V++ P + Y LA + + SK +
Sbjct: 112 QALFNAFMALLD------PGDEVIVFSPVWVSYIPQIILAGGTVNVV--ETFMSKNFQPS 163
Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
+ E+E + +A++I +P NPTG V +E ++ +++ A + ++ +DEVY
Sbjct: 164 LEEVEGLLVG-----KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS 218
Query: 203 NVYAEGSKFYSF-------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY---- 250
VY +F S +++ G SK + M G R GY
Sbjct: 219 LVY--TDEFTSILDVSEGFDRIVYING-------------FSKSHSM--TGWRVGYLISS 261
Query: 251 SEVINLDPGVKAM--LH-KSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRA-QAVLDGC 306
+V A+ + + S C +A Q A L+
Sbjct: 262 EKVA------TAVSKIQSHTTS---CINTVA------------------QYAALKALEV- 293
Query: 307 RGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPV 366
+ M + F K V++ L + G+
Sbjct: 294 -----DNSYM-------------VQTFKERKNFVVERL-----------KKM-GVKFVEP 323
Query: 367 QGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
+GA Y F +++ + LLE + +VPG+ F PG R
Sbjct: 324 EGAFYLFFKVRGDDVKFCER--------------LLEEKKVALVPGSAFL-KPG--FVR 365
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 82.6 bits (205), Expect = 3e-17
Identities = 47/234 (20%), Positives = 83/234 (35%), Gaps = 30/234 (12%)
Query: 22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVIL 81
P ++ + + Y S E +R + RR ++I
Sbjct: 34 QFE-TPKFIQDALKNHTHS-----LNIYPKSAFEESLRAAQRGFFKRRFKIELKENELIS 87
Query: 82 SAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDESKQW 139
+ G+ + + + ++ D P + P P Y +Y +A + + +K+
Sbjct: 88 TLGSREVLFNFPSFVLFDYQN--PTIAYPNPFYQIYEGAAKFIKAKS----LLMPLTKEN 141
Query: 140 G-LPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
P L + +VI+N P NPTG+ L+ E + +K A + L D
Sbjct: 142 DFTP--SLNEKELQEVD------LVILNSPNNPTGRTLSLEELISWVKLALKHDFILIND 193
Query: 198 EVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
E Y + +Y E + S + + G L S SK GLR G+
Sbjct: 194 ECYSE-IY-ENTPPPSLLEACMLAGNEAFKNVLV-IHSLSKRSSA--PGLRSGF 242
Score = 33.3 bits (77), Expect = 0.17
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 457 LERTGICIVPGAGFG-QVPGTYHFRTTILPQPEKLKAMLEKFREFHEE 503
+ GI +P G G + R ++ L+ LE + E
Sbjct: 327 YQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN 374
Score = 31.4 bits (72), Expect = 0.60
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 397 YAFELLERTGICIVPGAGFG-QVPGTYHFR 425
+A L + GI +P G G + R
Sbjct: 322 FAKTLYQNEGIITLPALYLGRNRIGADYVR 351
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 82.2 bits (204), Expect = 4e-17
Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 46/236 (19%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
P+ + L+ + G Y A++ R G D + + G+
Sbjct: 40 PEAPLKALAEALN--DPTTYG-YCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS 96
Query: 86 SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGL 141
+G+ +L L E P +L+P YP Y + +A + + +
Sbjct: 97 QEGLAHLLLALTE------PEDLLLLPEVAYPSYFGAARVASLRT----FLIPLREDGLA 146
Query: 142 PISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
+ + + + +++ P NPTG V ++ + A + L+L D Y
Sbjct: 147 DLKAVPEGVWR-----EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
Query: 202 DNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
D VY + S K+ +VE S SK Y + G R G+
Sbjct: 202 DQVY--EGEAPSPLALPGAKERVVE------------LFSLSKSYNLA--GFRLGF 241
Score = 40.6 bits (96), Expect = 8e-04
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Query: 345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER 404
++RA +A+ +S P + MY + +LP EG + + L+ER
Sbjct: 290 RERALGMAEALK--GVLSLLPPRATMYLWG--RLP---------EGV-DDLEFGLRLVER 335
Query: 405 TGICIVPGAGFGQ 417
G+ + PG GFG
Sbjct: 336 -GVALAPGRGFGP 347
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 81.0 bits (201), Expect = 1e-16
Identities = 83/422 (19%), Positives = 148/422 (35%), Gaps = 129/422 (30%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P+ VK+ A+ L +G++ Y GI +R +A+ R +G ++ I++ G S
Sbjct: 46 PEHVKEAARRALA--QGKT--KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGS 101
Query: 87 DGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYSASLAEFNMEQIGY--------YL 133
+ ++ + +++ PG V++ P YP E + +
Sbjct: 102 QALFNLFQAILD------PGDEVIVLSPYWVSYP-----------EMVRFAGGVVVEVET 144
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLF 193
+ + + R+IT +A+V+ +P NPTG V KE ++ + + A +
Sbjct: 145 LPEEGFVPDPERVRRAITP-----RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFY 199
Query: 194 LFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY-- 250
L +DE+Y+ +Y + +S +V P ++ + +K + M G R GY
Sbjct: 200 LVSDEIYEHLLY--EGEHFSPGRV-----APEHTLTVNGA---AKAFAM--TGWRIGYAC 247
Query: 251 --SEVINLDPGVKAML----HKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQ-AVL 303
EVI KAM S + P +A Q A L
Sbjct: 248 GPKEVI------KAMASVSRQ-STT---SPDTIA------------------QWATLEAL 279
Query: 304 DGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSC 363
+ V E + E + ++R ++ + ++ G+
Sbjct: 280 TN------QEASRAFV-------EMAREAY-----------RRRRDLLLEGLTAL-GLKA 314
Query: 364 NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYH 423
GA Y V A E L G+ +VPG F G H
Sbjct: 315 VRPSGAFYVLMDTS---------PIAPD--EVRAA-ERLLEAGVAVVPGTDFA-AFG--H 359
Query: 424 FR 425
R
Sbjct: 360 VR 361
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 80.8 bits (199), Expect = 1e-16
Identities = 47/410 (11%), Positives = 113/410 (27%), Gaps = 84/410 (20%)
Query: 23 DPRF--PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEI-----IRRHVAQYISRRDGQPAD 75
DP K + + + ++D + + + +
Sbjct: 31 DPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATE 90
Query: 76 WQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDE 135
+ +++ G++ ++ + L + V+ P Y Y E+ Y
Sbjct: 91 DRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYV--------EETTYVRSG 142
Query: 136 SKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLF 195
+W ++ P ++ +P NP G + + ++ ++ +
Sbjct: 143 MYKWEGDAWGFDKK--------GPYIELVTSPNNPDGTIR-----ETVVNRPDDDEAKVI 189
Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVIN 255
D Y Y ++ ++ L +F SK G G R G+
Sbjct: 190 HDFAYYWPHYTPITRRQ--DHDIM----------LFTF---SKIT-GHAGSRIGW----- 228
Query: 256 LDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTV 315
A++ V + + + + + R +L+ + ++
Sbjct: 229 ------ALVKDKE-------VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESE 275
Query: 316 MDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQ 375
+ ++ ++ RE +K R + + + + + A +
Sbjct: 276 SE-----------NFFKYGREM------MKNRWEKLREVVKESDAFTLPKYPEAFCNYFG 318
Query: 376 MKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFR 425
L + A A L R + G G H R
Sbjct: 319 KSLESYP---AFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKK--HVR 363
Score = 38.4 bits (89), Expect = 0.005
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 441 AKAEGKCPSVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLKAMLEKFREF 500
A A L R + G G H R ++L + + LE+
Sbjct: 326 AFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKK--HVRVSMLSREDVFNVFLERLANM 383
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 79.5 bits (197), Expect = 4e-16
Identities = 54/237 (22%), Positives = 86/237 (36%), Gaps = 47/237 (19%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQD-VILSAGA 85
P + Q L ++ Y G E ++ + + R+ D +D V + G
Sbjct: 62 PQGIIDHFQKALT--IPENQK-YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGT 118
Query: 86 SDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSAS--LAEFNMEQIGYYLDESKQWGL 141
+G+ +V +I PG VL+P P Y Y A LA+ + L+ +
Sbjct: 119 KNGLVAVPTCVIN------PGDYVLLPDPGYTDYLAGVLLADGKP--VPLNLEP-PHYLP 169
Query: 142 PISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
S+++ I + K ++ + P NPTG TKE + I + D Y
Sbjct: 170 DWSKVDSQIIDKTK------LIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAY 223
Query: 201 QDNVYAEGSKFYSF------KKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
+ +K S K V +E S SKGY M G R G+
Sbjct: 224 GAFGF--DAKNPSILASENGKDVAIE------------IYSLSKGYNMS--GFRVGF 264
Score = 46.8 bits (112), Expect = 9e-06
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 345 KQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLER 404
K R + +G +Y + + P G S + L++
Sbjct: 313 KTRRDRFEAMLAKA-DLPFVHAKGGIYVWL--ETP---------PGY-DSEQFEQFLVQE 359
Query: 405 TGICIVPGAGFGQ 417
I + PG FG+
Sbjct: 360 KSILVAPGKPFGE 372
Score = 32.2 bits (74), Expect = 0.45
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 449 SVLYAFESLERTGICIVPGAGFGQVPGTYHFRTTILPQPEKLK-AM--LEKFREFHE 502
S + ++ I + PG FG+ G + R ++ +KL A L + +E
Sbjct: 349 SEQFEQFLVQEKSILVAPGKPFGE-NGNRYVRISLALDDQKLDEAAIRLTELAYLYE 404
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 77.2 bits (191), Expect = 2e-15
Identities = 54/281 (19%), Positives = 99/281 (35%), Gaps = 58/281 (20%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
P VK+ LD + Y D+ + + ++R PA W ++ G +
Sbjct: 39 PVSVKRALIDNLD-----CIERYPDADYFHLHQA-----LARHHQVPASW--ILAGNGET 86
Query: 87 DGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL 146
+ + + + ++ +I P + Y +LA+ E + L E+ W L + L
Sbjct: 87 E----SIFTVASGLKPRR--AMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAIL 140
Query: 147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA 206
E +T + + + P NPTG + + +Q I + L DE + D +
Sbjct: 141 EA-LTP-----DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFID--FI 192
Query: 207 EGSKFY-----SFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVK 261
+ + V L S +K Y GLR GY ++N D
Sbjct: 193 PHETGFIPALKDNPHIWV----------LRSL---TKFY-AIPGLRLGY--LVNSDDAAM 236
Query: 262 AMLHK-----SISAMLCPTVLALVSLPQLFDDPRFPDDVKQ 297
A + + S++A LA ++ D +
Sbjct: 237 ARMRRQQMPWSVNA------LAALAGEVALQDSAWQQATWH 271
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 73.4 bits (181), Expect = 3e-14
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 27/236 (11%)
Query: 22 DDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRR-DGQPADWQD-V 79
P P + A L + Y + G+ +R+ A ++ RR DG D + +
Sbjct: 41 KHP-TPKVITDALTASLHE-----LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEI 94
Query: 80 ILSAGASDGIKSVLKLLI-EDVDGKKPGVLIPIPQYPLY--SASLAEFNMEQIGYYLDES 136
+ G+ + + S ++ ++ DG KP ++ P P Y +Y + L + ++ +
Sbjct: 95 LPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEI----HFANCP 150
Query: 137 KQWGLPISELERSITEARKHCNPRAIVIIN-PGNPTGQVLTKENIQDIIKFAHREKLFLF 195
P + E K +V + P NP+G VL + +++ + +
Sbjct: 151 APSFNP--DWRSISEEVWKRT---KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIA 205
Query: 196 ADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGY 250
+DE Y + +Y +G+K + ++G + L F S SK + GLR G+
Sbjct: 206 SDECYSE-IYFDGNKPLGCLQAAAQLGRSRQK--LLMFTSLSKRSNVP--GLRSGF 256
Score = 30.3 bits (69), Expect = 1.8
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 394 SVLYAFELLERTGICIVPGAGFGQV-----PGTYHFR 425
+ +A L ++ I ++PG + PG + R
Sbjct: 338 DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVR 374
Score = 29.5 bits (67), Expect = 3.1
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 449 SVLYAFESLERTGICIVPGAGFGQV-----PGTYHFRTTILPQPEKLKAMLEKFREFH 501
+ +A ++ I ++PG + PG + R ++ E +
Sbjct: 338 DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 71.1 bits (175), Expect = 2e-13
Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 26 FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
P + + A+ VL+ +SV YT + GI +R +A ++ + D ++++++ G
Sbjct: 49 IPRAVLGEIAKEVLEK-EPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIG 106
Query: 85 ASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQW 139
+ + + ++LI+ PG V+ + P Y +L F +D
Sbjct: 107 GTGALDLLGRVLID------PGDVVIT---ENPSYINTLLAFEQLGAKIEGVPVDND--- 154
Query: 140 GLPISELERSITEARKHC-NPRAI-VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
G+ + LE I E + + I I NP G ++ E + +++ A + L + D
Sbjct: 155 GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIED 214
Query: 198 EVYQD 202
Y
Sbjct: 215 TAYNF 219
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 70.3 bits (173), Expect = 3e-13
Identities = 40/202 (19%), Positives = 78/202 (38%), Gaps = 32/202 (15%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
I ++L GAS+ +++L I + +LI +P Y Y + +
Sbjct: 70 IENYLKLKDIG--IVLGNGASE----IIELSISLFEK----ILIIVPSYAEYEINAKKHG 119
Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK 185
+ + YLDE+ + ++ I + ++I NP NP G ++ KE ++K
Sbjct: 120 VSVVFSYLDEN--MCIDYEDIISKIDDVDS------VIIGNPNNPNGGLINKEKFIHVLK 171
Query: 186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKS-MELASFMSCSKGYMGEC 244
A +K + DE + + + SF + Y + + +K +
Sbjct: 172 LAEEKKKTIIIDEAFIE--FTGDPS-SSFVGEIKN----YSCLFIIRAM---TKFF-AMP 220
Query: 245 GLRGGYSEVINLDPGVKAMLHK 266
G+R GY I + + A +
Sbjct: 221 GIRFGYG--ITNNKEIAAKIKA 240
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 67.3 bits (165), Expect = 3e-12
Identities = 56/301 (18%), Positives = 118/301 (39%), Gaps = 51/301 (16%)
Query: 26 FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPA-DWQDVILSA 83
FP ++ + A+ +++ Y+ + G ++++ + + + R G D ++I +
Sbjct: 58 FPRKELAEIAKEIIEK-EYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116
Query: 84 GASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQ 138
G+ + + KL ++ ++ P Y ++ F + L++
Sbjct: 117 GSQQALDLIGKLFLD------DESYCVL---DDPAYLGAINAFRQYLANFVVVPLEDD-- 165
Query: 139 WGLPISELERSITEAR---KHCNPRAI-VIINPGNPTGQVLTKENIQDIIKFAHREKLFL 194
G+ ++ LER ++E K + I V+ N NP G + E + +++ A + LF+
Sbjct: 166 -GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFI 224
Query: 195 FADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY---- 250
D+ Y Y EG ++G P + + L +F SK GLR G
Sbjct: 225 VEDDPYGALRY-EGETVDPIF----KIGGPERVVLLNTF---SKVLAP--GLRIGMVAGS 274
Query: 251 SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRFPDDV-------KQRAQAVL 303
E I K + K SA LC + + + + + +++ +L
Sbjct: 275 KEFIR-----KIVQAKQ-SADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVML 328
Query: 304 D 304
+
Sbjct: 329 N 329
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 66.0 bits (162), Expect = 5e-12
Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 55/229 (24%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
D +++ L+ + Y + + + +++R+ + ++++ G +
Sbjct: 30 KDHLEKHLVENLN-----CIRHYPEPDAGTLRQM-----LAKRNSVDNNA--ILVTNGPT 77
Query: 87 DGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL 146
+ + G + LI IP + Y + + E Y +E ++
Sbjct: 78 A----AFYQIAQAFRGSR--SLIAIPSFAEYEDACRMYEHEVCFYPSNE---------DI 122
Query: 147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA 206
+ N + NP NP G++L + I ++ H + F+ D+ Y +
Sbjct: 123 GEADFS-----NMDFCWLCNPNNPDGRLLQRTEILRLLN-DHPDTTFVL-DQSYVS--FT 173
Query: 207 EGSKFYS-----FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
K +++ + SF S Y G GLR GY
Sbjct: 174 TEEVIRPADIKGRKNLVM----------VYSF---SHAY-GIPGLRIGY 208
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 66.1 bits (162), Expect = 8e-12
Identities = 32/185 (17%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 26 FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
FP + ++ +++ Y + G +R + +++ +R + D+++++G
Sbjct: 91 FPKEIIRDILVEIMEK-YADKALQYGTTKGFTPLRETLMKWLGKR-YGISQDNDIMITSG 148
Query: 85 ASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQW 139
+ + + ++ + PG V++ + P Y A+L FN + Y LD+
Sbjct: 149 SQQALDLIGRVFLN------PGDIVVV---EAPTYLAALQAFNFYEPQYIQIPLDDE--- 196
Query: 140 GLPISELERSITEARKHCNPRAIVIINP--GNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
G+ + LE + E + +V P NP G + ++ + +++ A + D
Sbjct: 197 GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVED 256
Query: 198 EVYQD 202
+ Y +
Sbjct: 257 DPYGE 261
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 59.9 bits (146), Expect = 8e-10
Identities = 36/184 (19%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 26 FP-DDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAG 84
FP ++ + A +L +G+ Y+ + G +R VA++I ++V+++ G
Sbjct: 47 FPKEEAAEAAARILRE-KGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLITTG 99
Query: 85 ASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQIGYY---LDESKQW 139
+ + V K+ ++ G VL+ + P Y ++ F ++ + E
Sbjct: 100 SQQALDLVGKVFLD------EGSPVLL---EAPSYMGAIQAFRLQGPRFLTVPAGEE--- 147
Query: 140 GLPISELERSITEARKHCNPRAI-VIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADE 198
G + LE + R PR + +I + NPTG + + +++ L + D+
Sbjct: 148 GPDLDALEEVLKRER----PRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDD 203
Query: 199 VYQD 202
Y++
Sbjct: 204 AYRE 207
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 58.7 bits (143), Expect = 1e-09
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAE 123
+ PA + V+L G+ + I + PG V+ P+P + +Y+ S
Sbjct: 76 LKEVMQVPAGME-VLLGNGSDEIISMLALAAAR------PGAKVMAPVPGFVMYAMSAQF 128
Query: 124 FNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDI 183
+E +G L + L + ++ E + P + + P NPTG + +++ I
Sbjct: 129 AGLEFVGVPLRAD--FTLDRGAMLAAMAEHQ----PAIVYLAYPNNPTGNLFDAADMEAI 182
Query: 184 IKFA--HREKLFLFADEVYQDNVYAEGS 209
++ A + + DE YQ +A+ S
Sbjct: 183 VRAAQGSVCRSLVVVDEAYQP--FAQES 208
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 57.3 bits (139), Expect = 5e-09
Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 66/307 (21%)
Query: 18 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQP---- 73
P +F V+ + Y+ S GI + + Q + P
Sbjct: 43 PNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHY 102
Query: 74 ---ADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIPQYPLYSASLAEFNMEQ 128
D+ +++G+ G+ V +++I PG VL+ P YS +L +
Sbjct: 103 PPSQGQMDLCVTSGSQQGLCKVFEMIIN------PGDNVLL---DEPAYSGTLQSLHPLG 153
Query: 129 IGYY---LDESKQWGLPISELERSITE-------ARKHCNPRAIVII-NPGNPTGQVLTK 177
DES G+ L ++ + P+ + + N NPTG LT
Sbjct: 154 CNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTS 210
Query: 178 ENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSME-------L 230
E ++I + A + + D+ Y + + + SM+
Sbjct: 211 ERKKEIYELARKYDFLIIEDDPYYFLQFNK------------FRVPTFLSMDVDGRVIRA 258
Query: 231 ASFMSCSKGYMGECGLRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLF 286
SF SK GLR G+ +I + +LH + L P+ + + QL
Sbjct: 259 DSF---SKIISS--GLRIGFLTGPKPLIE-----RVILHIQ-VSTLHPSTFNQLMISQLL 307
Query: 287 DDPRFPD 293
+
Sbjct: 308 HEWGEEG 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 6e-08
Identities = 58/414 (14%), Positives = 109/414 (26%), Gaps = 126/414 (30%)
Query: 173 QVLTKENIQDIIKFAHREK--LFLFAD-EVYQDNVYAEGSKF--------YSF--KKVLV 219
+L+KE I II L LF Q+ + KF Y F +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKT 100
Query: 220 EMGEPYKSMELASFMSC-----------SKGYM--GEC--GLRGGYSEVINLDPGVKAML 264
E +P SM ++ +K + + LR ++ L P ++
Sbjct: 101 EQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLI 155
Query: 265 H------KSISAMLCPTVLALVSLPQLFDDPRF---------PDDVKQRAQAVLDGCRGQ 309
K+ + V + D F P+ V + Q +L +
Sbjct: 156 DGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--QID 210
Query: 310 SVGQTVMDCVVNPPQPGEPSYEQFSR---EKQS-----VLDSLKQRAKMVADTFNSIEGM 361
+ D N + R K VL ++ + + FN +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFN----L 264
Query: 362 SC------------NPVQGAMYAFPQMKLPAKAIAKAKAEGKCPSVL-YAFELLERTGIC 408
SC + + A + + + + + L + L R +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 409 IVP------GAGFGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKCPSVLYAFESLERTGI 462
P T+ W+H + + + LE
Sbjct: 325 TNPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTI--------IESSLNVLE---- 367
Query: 463 CIVPGAGFGQVPGTY--HFRT-TILPQ----PEKLKAML--EKFREFHEEFLAK 507
P Y F ++ P P L +++ + + + K
Sbjct: 368 -----------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Score = 38.3 bits (88), Expect = 0.006
Identities = 40/262 (15%), Positives = 76/262 (29%), Gaps = 80/262 (30%)
Query: 4 VFSLSLQVLALVSLPQLFDD-PRFPDDVK---------------QRAQAVLDGCRGQSVG 47
+ SL VL ++FD FP V++ S+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL- 416
Query: 48 SYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKK--- 104
+ ++ IS + + ++ + +++ + K
Sbjct: 417 ---------VEKQPKESTISIPSIY-------LELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 105 PGVLIPIP--QYPLYSASLAEFNMEQIGYYLDESKQ---------WGLPISELERSITEA 153
LIP QY YS IG++L + L LE+ I
Sbjct: 461 SDDLIPPYLDQY-FYS---------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 154 RKHCNPRAIVI------------INPGNPTGQVLTKENIQDIIKFAHR--EKLFL--FAD 197
N ++ I +P + L + I+ F + E L + D
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERL----VNAILDFLPKIEENLICSKYTD 566
Query: 198 EVYQDNVYAEGSKFY--SFKKV 217
+ + + AE + + K+V
Sbjct: 567 -LLRIALMAEDEAIFEEAHKQV 587
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 53.4 bits (129), Expect = 7e-08
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG---VLIPIPQYPLYSASLA 122
++ G + V++S GA +GI+ +++ E PG +L P Y +YS S
Sbjct: 67 YAQYAGVKPEQ--VLVSRGADEGIELLIRAFCE------PGKDAILYCPPTYGMYSVSAE 118
Query: 123 EFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQD 182
+E ++ W L + + + + + + +P NPTGQ++ ++ +
Sbjct: 119 TIGVECRTVPTLDN--WQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRT 170
Query: 183 IIKFAHREKLFLFADEVYQD 202
+++ R K + ADE Y +
Sbjct: 171 LLE-LTRGKAIVVADEAYIE 189
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 53.5 bits (129), Expect = 9e-08
Identities = 49/316 (15%), Positives = 92/316 (29%), Gaps = 60/316 (18%)
Query: 18 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQ 77
+ D D + G +Y GI IR A+ + G PAD
Sbjct: 44 AEQLDLSN--DLLSLPGGDFRTK-DGVDCRNYGGLLGIADIRELWAEAL----GLPAD-- 94
Query: 78 DVILSAGASDGIKS--VLKLLIEDVDG------KKPGVLIPIPQYPLYSASLAEFNMEQI 129
V+ G+S I + + + V P P Y
Sbjct: 95 LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPV-PGYDRHFTITEHFGF 153
Query: 130 GYY---LDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKF 186
+ + G + + + + + + GNPTG +++ +++ +
Sbjct: 154 EMINVPMTDE---GPDMGVVRELVKDPQVKG---MWTVPVFGNPTGVTFSEQTCRELAEM 207
Query: 187 AHREKLFLFADEVYQDNVYA------EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
+ F + DN YA E ++ + G P + ++S SK
Sbjct: 208 STAAPDFR----IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSST---SKIT 260
Query: 241 MGECGLRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD-------- 288
G + E I H + + P L ++ Q F D
Sbjct: 261 HA--GSGVSFFASSKENIE-----WYASHAN-VRGIGPNKLNQLAHAQFFGDVAGLKAHM 312
Query: 289 PRFPDDVKQRAQAVLD 304
+ + + + VL+
Sbjct: 313 LKHAASLAPKFERVLE 328
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 53.1 bits (128), Expect = 1e-07
Identities = 44/312 (14%), Positives = 99/312 (31%), Gaps = 49/312 (15%)
Query: 18 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSP-GIEIIRRHVAQY-------ISRR 69
FD + + A G + +Y G+ R A Y +
Sbjct: 37 DADFD---LSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVW 93
Query: 70 DGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQI 129
+ + Q ++L+ G++ + + P +++ +P Y + L E +
Sbjct: 94 NNSSLELQGLVLTFALLHGVRGSTGPWLS----QTPKMIVTVPGYDRHFLLLQTLGFELL 149
Query: 130 GYYLDESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIK-FA 187
+ G + +ER + + I+ + NP G+ ++ E + + A
Sbjct: 150 TVDMQSD---GPDVDAVERLA---GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQA 203
Query: 188 HREKLFLFADEVYQDNVYAEGSK--FYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG 245
+FAD+ Y+ + E + +F + + G P ++ AS SK G
Sbjct: 204 AAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFAST---SKITFA--G 258
Query: 246 LRGGY----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD---------PRFP 292
G+ + I + + + P + + +
Sbjct: 259 AGLGFVASSEDNIR-----WLSKYLG-AQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHA 312
Query: 293 DDVKQRAQAVLD 304
+ + +AV +
Sbjct: 313 AIIAPKFRAVDE 324
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 52.1 bits (126), Expect = 2e-07
Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 30/185 (16%)
Query: 106 GVLIPIPQY-PLYSA------SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN 158
VLI P Y P + L ++ +E+ + + +LE I E +
Sbjct: 115 AVLINSPVYPPFARSVRLNNRKLVSNSL------KEENGLFQIDFEQLENDIVEN----D 164
Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
+ ++ NP NP G+V +E ++ I + + L +DE++QD G + SF V
Sbjct: 165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTL-FGHEHVSFNTV- 222
Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC--PT 275
+K S +K + + G + Y I +P + A +
Sbjct: 223 ---SPDFKDF-ALVLSSATKTFNIA--GTKNSY--AIIENPTLCAQFKHQQLVNNHHEVS 274
Query: 276 VLALV 280
L +
Sbjct: 275 SLGYI 279
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 51.7 bits (125), Expect = 2e-07
Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 28/222 (12%)
Query: 62 VAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQY-PLYSAS 120
A++ + R G A + + G+ + V++P P Y P +
Sbjct: 67 TAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSK----VIVPTPAYPPFFHL- 121
Query: 121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
+ + G+ + ++E+ R+I++ NP NP G V E +
Sbjct: 122 -LSATQREG---IFIDATGGINLHDVEKGFQA-----GARSILLCNPYNPLGMVFAPEWL 172
Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
++ AHR + DE++ V+ + V + S+ + + SK +
Sbjct: 173 NELCDLAHRYDARVLVDEIHAPLVF--DGQHTVAAGV----SDTAASV-CITITAPSKAW 225
Query: 241 -MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC-PTVLALV 280
+ GL+ +I +P + + + L L+
Sbjct: 226 NIA--GLKCAQ--IIFSNPSDAEHWQQLSPVIKDGASTLGLI 263
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 51.4 bits (124), Expect = 3e-07
Identities = 31/185 (16%), Positives = 74/185 (40%), Gaps = 31/185 (16%)
Query: 106 GVLIPIPQY-PLYSA------SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCN 158
++I P Y P S L +++ E+ + + ++E I +
Sbjct: 116 KIMIQEPVYSPFNSVVKNNNRELIISPLQK-----LENGNYIMDYEDIENKIK------D 164
Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
+ ++ NP NP G+V TK+ ++ + + + + +DE++ D + + K +
Sbjct: 165 VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIIL-KKHKHIPMASI- 222
Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC--PT 275
+ ++ + M+ +K + + GL+ Y V+ D +L + + +
Sbjct: 223 ---SKEFEKN-TITCMAPTKTFNIA--GLQSSY--VVLPDEKDYKLLDDAFTRIDIKRNN 274
Query: 276 VLALV 280
+LV
Sbjct: 275 CFSLV 279
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 51.3 bits (124), Expect = 4e-07
Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 31/185 (16%)
Query: 106 GVLIPIPQY-PLYSASLAEFNMEQIGYYLDES------KQWGLPISELERSITEARKHCN 158
VL+ P Y P + N L S + + LE+ +
Sbjct: 108 SVLVQPPIYPPFFEM--VTTN----NRQLCVSPLQKQNDTYAIDFEHLEKQFQQ-----G 156
Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
+ +++ +P NP G+V KE + + + + + ADE++ D +Y F +
Sbjct: 157 VKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIY-ADHTHTPFASL- 214
Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC--PT 275
E + + M+ SK + + GL+ +I + ++
Sbjct: 215 ---SEELAAR-TITCMAPSKTFNIA--GLQASI--IIIPNEKLRQAFTSIQYRQGFHGLN 266
Query: 276 VLALV 280
+ A
Sbjct: 267 IFAYT 271
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 51.0 bits (123), Expect = 5e-07
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 38/188 (20%)
Query: 106 GVLIPIPQY-PLYSA------SLAEFNMEQI--GYYLDESKQWGLPISELERSITEARKH 156
GV+I P Y Y A ++ +E+ G++ D + +LE + +
Sbjct: 113 GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCD--------MGKLEAVLAKP--- 161
Query: 157 CNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKK 216
+ +++ +P NPTG+V T + ++ + R + + +DE++ D V+ +
Sbjct: 162 -ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW-GEQPHIPWSN 219
Query: 217 VLVEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC-- 273
V + A S SK + + L G Y I + + ++
Sbjct: 220 VARG--------DWALLTSGSKSFNIP--ALTGAY--GIIENSSSRDAYLSALKGRDGLS 267
Query: 274 -PTVLALV 280
P+VLAL
Sbjct: 268 SPSVLALT 275
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 51.0 bits (123), Expect = 5e-07
Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 30/185 (16%)
Query: 106 GVLIPIPQY-PLYSASLAEFNMEQIGYYLDESK------QWGLPISELERSITEARKHCN 158
VLI P Y P N + L E+ ++ + +LE+ I + N
Sbjct: 145 AVLINSPVYYPFART--IRLN----DHRLVENSLQIINGRFEIDFEQLEKDIIDN----N 194
Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
+ ++ +P NP G+V +++ I + + + L +DE++QD G+ +S +
Sbjct: 195 VKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL-FGNTHHSLNTL- 252
Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISA--MLCPT 275
+ S +K + + G + + I + ++ A
Sbjct: 253 ----DASYKDFTIILSSATKTFNIA--GTKNSF--AIIQNESLRRKFQYRQLANNQHEVP 304
Query: 276 VLALV 280
+ ++
Sbjct: 305 TVGMI 309
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 49.8 bits (120), Expect = 1e-06
Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 30/185 (16%)
Query: 106 GVLIPIPQY-PLYSASLAEFNMEQIGYYLDESK------QWGLPISELERSITEARKHCN 158
GV+I P Y P + A + + E + + + +LE+ + N
Sbjct: 115 GVIIITPVYYPFFMA--IKNQ----ERKIIECELLEKDGYYTIDFQKLEKLSKDK----N 164
Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
+A++ +P NP G+V K+ +Q I + L L++DE++ D + G + F+ +
Sbjct: 165 NKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM-PGYEHTVFQSI- 222
Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISAMLC--PT 275
+ + + +F + SK + + G+ +I +P ++ KS A T
Sbjct: 223 ----DEQLADKTITFTAPSKTFNIA--GMGMSN--IIIKNPDIRERFTKSRDATSGMPFT 274
Query: 276 VLALV 280
L
Sbjct: 275 TLGYK 279
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 49.4 bits (119), Expect = 1e-06
Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 30/185 (16%)
Query: 106 GVLIPIPQY-PLYSASLAEFNMEQIGYYLDESK------QWGLPISELERSITEARKHCN 158
+L+ P Y YS E N G + S ++ + ++LE + +
Sbjct: 111 QILVQEPVYNMFYSV--IEGN----GRRVISSDLIYENSKYSVNWADLEEKLATP----S 160
Query: 159 PRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVL 218
R +V NP NP G ++E ++ I + + ++ L +DE++ D V V
Sbjct: 161 VRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVL-TDEDITPAFTV- 218
Query: 219 VEMGEPYKSMELASFMSCSKGY-MGECGLRGGYSEVINLDPGVKAMLHKSISA--MLCPT 275
+ + S +S SK + + L I +P ++A +S + P
Sbjct: 219 ----DWDAKNWVVSLISPSKTFNLA--ALHAAC--AIIPNPDLRARAEESFFLAGIGEPN 270
Query: 276 VLALV 280
+LA+
Sbjct: 271 LLAIP 275
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 47.2 bits (113), Expect = 6e-06
Identities = 35/190 (18%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYSAS 120
++ A ++L+AG+S+GI++ ++ ++IP + A
Sbjct: 60 LAAHHQVEAPS--ILLTAGSSEGIRAAIEAYAS------LEAQLVIPELTYGDGEHF-AK 110
Query: 121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENI 180
+A + ++ W I L+ ++ + P + ++NP NPTG + + I
Sbjct: 111 IAGMKVTKV----KMLDNWAFDIEGLKAAVAA---YSGPSIVYLVNPNNPTGTITPADVI 163
Query: 181 QDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGY 240
+ I + DE Y + + +F S ++ + E + + SK +
Sbjct: 164 EPWIA-SKPANTMFIVDEAYAE--FVNDPRFRSISPMITQGAEN-----IILLKTFSKIH 215
Query: 241 MGECGLRGGY 250
G+R GY
Sbjct: 216 -AMAGMRVGY 224
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 45.5 bits (108), Expect = 3e-05
Identities = 42/306 (13%), Positives = 89/306 (29%), Gaps = 39/306 (12%)
Query: 18 PQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADW- 76
+ D + + G V +Y GI IR+ A + Q
Sbjct: 45 SEQLDFADELLALPGKGDFKAA--DGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGD 102
Query: 77 ---QDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYL 133
+++ + I + + + P+P Y + + F E I +
Sbjct: 103 ASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPM 162
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVII-NPGNPTGQVLTKENIQDIIKFAHREKL 192
+E G + +E + + + + ++ NPTG +T++ + +
Sbjct: 163 NED---GPDMDAVEELVKNPQ----VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPD 215
Query: 193 FLFA-DEVYQD-NVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGY 250
F D Y + E + + G P + S SK + G +
Sbjct: 216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTST---SKITLA--GAGVSF 270
Query: 251 ----SEVINLDPGVKAMLHKSISAMLCPTVLALVSLPQLFDD--------PRFPDDVKQR 298
+E H + P + ++ + F D + + +
Sbjct: 271 FLTSAENRK-----WYTGHAG-IRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPK 324
Query: 299 AQAVLD 304
VL+
Sbjct: 325 FNKVLE 330
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 44.9 bits (107), Expect = 4e-05
Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 62/204 (30%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPG--VLIPIP---QYPLYS-- 118
++ + +I +AG + I+ + ++L++ ++ P QY +
Sbjct: 76 VADFYQLEEEE--LIFTAGVDELIELLTRVLLD------TTTNTVMATPTFVQYRQNALI 127
Query: 119 --ASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLT 176
A + E + + + + +I E + I NP NPTG +
Sbjct: 128 EGAEVREIPLL---------QDGEHDLEGMLNAIDE-----KTTIVWICNPNNPTGNYIE 173
Query: 177 KENIQDIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELAS---- 232
+IQ + + + DE Y + Y +P K +L
Sbjct: 174 LADIQAFLD-RVPSDVLVVLDEAYIE--YVT--------------PQPEKHEKLVRTYKN 216
Query: 233 ------FMSCSKGYMGECGLRGGY 250
F SK Y G R GY
Sbjct: 217 LIITRTF---SKIY-GLASARVGY 236
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 44.5 bits (106), Expect = 5e-05
Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 17/182 (9%)
Query: 27 PDDVKQRAQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGAS 86
+ + A +D + Y + +E+ R +A YI+++ G ++ + G S
Sbjct: 45 SEALVADLVATVDKI-ATELNRYPERDAVEL-RDELAAYITKQTGVAVTRDNLWAANG-S 101
Query: 87 DGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISEL 146
+ I L+ L++ G L P Y ++ + E I + + +
Sbjct: 102 NEI---LQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGA--DFRIDMDVA 156
Query: 147 ERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQDNVYA 206
I + P + + P NPTG V + + D+ + + + DE Y + ++
Sbjct: 157 LEEIRAKQ----PDIVFVTTPNNPTGDVTSLD---DVERIINVAPGIVIVDEAYAE--FS 207
Query: 207 EG 208
Sbjct: 208 PS 209
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 68/477 (14%), Positives = 126/477 (26%), Gaps = 182/477 (38%)
Query: 115 PLYSASL-AEFNMEQIGY--YLDESKQWGLPISELERSITEARK--------HCNPRAIV 163
P A L +F +GY L E + G L +TE H A+
Sbjct: 54 PTTPAELVGKF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH----ALA 105
Query: 164 IINPGNPTGQVLTKENIQDIIK--FA------------HREKLFLFADEVYQDNVYAEGS 209
++ +++IK LF V +
Sbjct: 106 AKLLQENDTTLVKT---KELIKNYITARIMAKRPFDKKSNSALF--------RAVGEGNA 154
Query: 210 KFYS-----------FKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG------YSE 252
+ + F++ L ++ + Y + + + S + E +R +++
Sbjct: 155 QLVAIFGGQGNTDDYFEE-LRDLYQTYHVL-VGDLIKFSAETLSEL-IRTTLDAEKVFTQ 211
Query: 253 VINLD---------PGVKAMLHKSISAMLCPTVLALVSLPQLFDDPRF----PDDVKQRA 299
+N+ P +L IS CP ++ ++ L + P +++
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPIS---CP-LIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 300 QAVLDGCRGQSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADTFNSIE 359
+ G Q + V + S+E F + + L F I
Sbjct: 268 KGAT-GH-SQGL---VTAVAIA----ETDSWESFFVSVRKAITVL----------F-FI- 306
Query: 360 GMSCNPVQGAMYAFPQMKLPAKAIAKAKAEGK---CP--SVLYAFELLERTGICIVPGAG 414
G+ C A +P LP + + + P S+ + +
Sbjct: 307 GVRC---YEA---YPNTSLPPSILEDSLENNEGVPSPMLSI---------SNLT------ 345
Query: 415 FGQVPGTYHFRQQVWWRHYTQRAIAKAKAEGKC--------------------PSVLYAF 454
++QV Q + K + P LY
Sbjct: 346 ----------QEQV------QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 455 ESLERTGICIVPGAGFGQVPGT---YHFRTTILP--QPEKLKAMLEKFREFHEEFLA 506
R G ++P + F LP P FH L
Sbjct: 390 NLTLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVASP------------FHSHLLV 433
Score = 41.2 bits (96), Expect = 9e-04
Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 81/244 (33%)
Query: 299 AQAVL---DGCRGQSVGQTVMDCVVNPP---------QPGEPSYEQFSR-EKQSVLDSLK 345
AQ V D + G +++D V+N P + G+ E +S ++++D
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 346 QRAKMVADTFNSIEGMSCNPVQGAMYA--FPQMKLPA-KAIAKAKAEGKCPSVLYAFELL 402
+ K+ + + +G + A F Q PA + KA AFE L
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---PALTLMEKA-----------AFEDL 1747
Query: 403 ERTGICIVPGAGF-GQVPGTYHFRQQVWWRH----YTQRAIAKAKAEGKCPSVLYAFESL 457
+ G+ I A F G H Y A+A + A+ V+ + ESL
Sbjct: 1748 KSKGL-IPADATFAG---------------HSLGEYA--ALA-SLAD-----VM-SIESL 1782
Query: 458 -----ERTGICI---VPGAGFGQ--------VPGTYHFRTTILPQPEKLKAMLEKFREFH 501
R G+ + VP G+ PG R E L+ ++E+ +
Sbjct: 1783 VEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPG----RVAASFSQEALQYVVERVGKRT 1837
Query: 502 EEFL 505
+
Sbjct: 1838 GWLV 1841
Score = 39.6 bits (92), Expect = 0.003
Identities = 65/396 (16%), Positives = 115/396 (29%), Gaps = 169/396 (42%)
Query: 3 PVFSLSLQVLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGSYTDS-----PGIEI 57
VF+ L +L + P PD Y S P I +
Sbjct: 207 KVFTQGLNILEWLENPS-----NTPDK------------------DYLLSIPISCPLIGV 243
Query: 58 IRRHVAQYI--SRRDG-QPADWQDV----------ILSA---GASDGIKSVLKLLIEDVD 101
I+ +A Y+ ++ G P + + +++A +D +S + + +
Sbjct: 244 IQ--LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 102 GKKPGVLIPI-----PQYPLYSASLAEFNMEQIGYYLDESKQW------------GLPIS 144
VL I YP S + L++S + L
Sbjct: 302 -----VLFFIGVRCYEAYPNTSLPPSI---------LEDSLENNEGVPSPMLSISNLTQE 347
Query: 145 ELERSITEARKHC-----------N-PRAIVIINPGNP---TGQVLTKENI-------QD 182
+++ + + H N + +V+ G P G LT Q
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--SGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 183 IIKFAHREKL-----FL-----F--------ADEVYQDNVYAEGSKFYSFKKVLVEMGEP 224
I F+ R KL FL F +D + +D LV+
Sbjct: 406 RIPFSER-KLKFSNRFLPVASPFHSHLLVPASDLINKD---------------LVKNNVS 449
Query: 225 YKSMELASFMSCSKGYMGECG--LRGGYSEVINLDPGVKAMLHKSISAMLCPTVLALVSL 282
+ + ++ + Y G LR L SIS +
Sbjct: 450 FNAKDIQIPV-----YDTFDGSDLRV---------------LSGSISERIV--------- 480
Query: 283 PQLFDDP-RFPDDVKQRAQAVLD-GCRGQSVGQTVM 316
+ P ++ + +A +LD G G + G V+
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVL 515
Score = 35.4 bits (81), Expect = 0.056
Identities = 37/183 (20%), Positives = 54/183 (29%), Gaps = 71/183 (38%)
Query: 309 QSVGQTVMDCVVNPPQPGEPSYEQFSREKQSVLDSLKQRA-KMVADTFN-SIEGMSC-NP 365
Q G M G Y+ + V + RA DT+ SI + NP
Sbjct: 1627 QEQG---M---------GMDLYKTSKAAQD-VWN----RADNHFKDTYGFSILDIVINNP 1669
Query: 366 VQGAMYAFPQMKLPAKAIA--------KAKAEGKCPSVLYAFELLERTGICIVPGAGFGQ 417
V ++ F K K I + +GK + E+ E +
Sbjct: 1670 VNLTIH-FGGEK--GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-------- 1718
Query: 418 VPGTYHFRQQVWWRH---------YTQRAI-AKAKAEGKCPSVLYAFESLERTGICIVPG 467
+R +TQ A+ KA AFE L+ G+ I
Sbjct: 1719 ------------FRSEKGLLSATQFTQPALTLMEKA---------AFEDLKSKGL-IPAD 1756
Query: 468 AGF 470
A F
Sbjct: 1757 ATF 1759
Score = 34.6 bits (79), Expect = 0.088
Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 69/222 (31%)
Query: 179 NIQDIIKFAHREKLFLFAD-------EVYQDNVYAEGSK-FYSFKKVLVEMGEPYKS--- 227
+I DI+ F E Y ++ +K+ E+ E S
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 228 -------------------MELASFMSCSKGYMGECGLRGGYSEVINLDPGVKAML-HKS 267
ME A+F + GL P H S
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFE-----DLKSKGLI----------PADATFAGH-S 1763
Query: 268 I---SAMLCPT-VLALVSLPQLFDDPRFPDDVKQRAQAVLDGCRGQSVGQTVMDCV-VNP 322
+ +A+ V+++ SL ++ V R + +G++ + +NP
Sbjct: 1764 LGEYAALASLADVMSIESLVEV---------VFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 323 PQPGEPSYEQFSREK-QSVLDSLKQRAKMVADT--FNSIEGM 361
+ FS+E Q V++ + +R + + +N E
Sbjct: 1815 GRVA----ASFSQEALQYVVERVGKRTGWLVEIVNYNV-ENQ 1851
Score = 29.2 bits (65), Expect = 3.9
Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 47/165 (28%)
Query: 6 SL---SLQVLALVSLPQLFDDPRFPDDVK---QRAQAVLDGCRGQSVGSYTDSPGIEIIR 59
SL + AL SL + V+ R + +G + G+
Sbjct: 1763 SLGEYA----ALASLADVMS---IESLVEVVFYRGMTMQVAVPRDELGR--SNYGM---- 1809
Query: 60 RHVAQYISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVL------IPIPQ 113
I+ G+ + ++ + + ++ V +E V + ++ + Q
Sbjct: 1810 ------IAINPGR-------VAASFSQEALQYV----VERVGKRTGWLVEIVNYNVENQQ 1852
Query: 114 YPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSIT--EARKH 156
Y + L ++ + L+ K + I EL++S++ E H
Sbjct: 1853 YVA-AGDLR--ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 43.1 bits (102), Expect = 2e-04
Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 23/169 (13%)
Query: 93 LKLLIEDVDGKKPGVLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSI 150
+ LI + VL + Y S + + + + +
Sbjct: 115 IHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNEL 174
Query: 151 TEARKHCNPRAIVIINPG--NPTGQVLTKE---NIQDIIK---FAHREKLFLFADEVYQD 202
+ +VI N NPTG + + +I + +K R + + D Y D
Sbjct: 175 AAKQ----TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLD 230
Query: 203 NVYAEGS--KFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECGLRGG 249
Y+ F K + + + S SKG G R G
Sbjct: 231 --YSGEKDEVRAFFNK-FSHLPK---EILTCVCYSLSKG-FTMYGQRVG 272
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 42.1 bits (100), Expect = 2e-04
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 28/169 (16%)
Query: 34 AQAVLDGCRGQSVGSYTDSPGIEIIRRHVAQYISRRDGQPADWQDVILSAGASDGIKSVL 93
V ++ Y D E + + Y+ + V + G +D ++
Sbjct: 38 VDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTDFLSKNN---VSVGNG-ADE---II 89
Query: 94 KLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYYLDESKQWGLPISELERSITEA 153
+++ D + P Y Y + + L + + I E
Sbjct: 90 YVMMLMFDR----SVFFPPTYSCYRIFAKAVGAKFLEVPLTK-----------DLRIPEV 134
Query: 154 RKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVYQD 202
+ I NP NPTG V +E I+ I+K F+ DE Y +
Sbjct: 135 NVG-EGDVVFIPNPNNPTGHVFEREEIERILKTG----AFVALDEAYYE 178
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 40.0 bits (94), Expect = 0.001
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 21/167 (12%)
Query: 107 VLIPIPQYPLYSASLAEFNMEQIGY-YLDESKQWGLPISELERSITEARKHCNPRAIVII 165
++ + Y EF + + + I + +I E + + R +I
Sbjct: 128 LICHDYYWAPYRKICEEFGRNFKTFEFFTDDF--AFNIDVYKEAIDEGIR-DSDRIASLI 184
Query: 166 NPG--NPTGQVLTKE---NIQDIIK---FAHREKLFLFADEVYQDNVYAEGSKF--YSFK 215
N NPTG L+ E + +K +K+ L D Y + +A F+
Sbjct: 185 NSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLE--FAGDGDQQRKFFE 242
Query: 216 KVLVEMGEPYKSMELASFMSCSKGYMGECGLRGGYSEVINLDPGVKA 262
K +++ + S SK GLR G + I+ +
Sbjct: 243 K----FSNLPRNLFVVVAFSMSKS-HTAYGLRSGAAVGISSSKEIIE 284
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 39.8 bits (94), Expect = 0.001
Identities = 39/185 (21%), Positives = 60/185 (32%), Gaps = 35/185 (18%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
++ P D ++L G D + + + P + Y A +A
Sbjct: 60 LAEHFSCPEDN--LMLVRG-IDE---CFDRISAEFSS--MRFVTAWPGFDGYRARIAVSG 111
Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK 185
+ L + L ++L + +V+ NP NPTGQ L+ ++ +
Sbjct: 112 LRHFEIGLTD--DLLLDPNDLAQVS-------RDDCVVLANPSNPTGQALSAG---ELDQ 159
Query: 186 FAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG 245
R L DE Y D + LV SF SK Y G G
Sbjct: 160 LRQRAGK-LLIDETYVDYSSFRARGLAYGENELV----------FRSF---SKSY-GLAG 204
Query: 246 LRGGY 250
LR G
Sbjct: 205 LRLGA 209
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 39.8 bits (92), Expect = 0.002
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 134 DESKQWGLPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKL 192
+ + I +L+ +I + N AIV N GQ ++ N++++ + A + +
Sbjct: 160 YDDWKGDFDIKKLKENIAQHGAD-NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI 218
Query: 193 FLFADEV-YQDNVYA-----EGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG 245
F+ D + +N Y K + K+V+ +M + ++ MS K + G
Sbjct: 219 FVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADAL----TMSAKKDPLLNIG 273
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 39.5 bits (93), Expect = 0.002
Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 32/199 (16%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIP---QYPLYSASL- 121
++++ + +I+ AG SD + ++ I K L Y +Y+
Sbjct: 74 LAQKYKVQNEN--IIIGAG-SDQV---IEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCG 127
Query: 122 AEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQ 181
A+ Y +L + + + I + P NP G+ L
Sbjct: 128 AKC------YKTQSITHNLDEFKKLYETHKD-----EIKLIFLCLPNNPLGECLDASEAT 176
Query: 182 DIIKFAHREKLFLFADEVYQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYM 241
+ IK E + D Y + + SK + L++ + + + SK Y
Sbjct: 177 EFIK-GVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDN-----VLYLGTFSKLY- 229
Query: 242 GECGLRGGY----SEVINL 256
G GLR GY + +I+
Sbjct: 230 GLGGLRIGYGIANANIISA 248
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt,
transferase; 1.40A {Escherichia coli} PDB: 3kof_A
1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Length = 337
Score = 37.6 bits (87), Expect = 0.007
Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 16/133 (12%)
Query: 322 PPQPGEPSYEQFSREK-QSVLDSLKQRAKMVADT--FNSIE-----GMSCNP--VQGAMY 371
S L SL+Q +VADT +++ + NP + A
Sbjct: 5 HHHHHHSSGLVPRGSHMTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAA- 63
Query: 372 AFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAG--FGQVPGTYHFRQQVW 429
Q+ K I A A K S A ++++ T V VPG
Sbjct: 64 ---QIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDAR 120
Query: 430 WRHYTQRAIAKAK 442
+ T+ +IAKAK
Sbjct: 121 LSYDTEASIAKAK 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.007
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 30/57 (52%)
Query: 336 EKQSV--LD-SLKQRAKMVADTFNSIEGMSCNPVQGAMYAFPQMKLPAKAIAKAKAE 389
EKQ++ L SLK +YA PA AI KA E
Sbjct: 18 EKQALKKLQASLK------------------------LYA-DD-SAPALAI-KATME 47
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 37.6 bits (88), Expect = 0.008
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 141 LPISELERSITEARK--HCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHREKLFLFAD 197
L ++++E ++ E R P+ + I N G TK+ ++DI L+LF D
Sbjct: 126 LRVADIESALHENRSEHMVIPKLVYISNTTE-VGTQYTKQELEDISASCKEHGLYLFLD 183
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 36.6 bits (84), Expect = 0.020
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKLFLFADEV 199
+ + +L++ I E N I + N GQ ++ N++ + + + +F D
Sbjct: 158 IDLKKLQKLIDEKGAE-NIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDAT 216
Query: 200 ------YQDNVYAEGSKFYSFKKVLVEMGEPYKSMELASFMSCSKGYMGECG 245
Y +G + S +++ EM MS K + G
Sbjct: 217 RCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGC----TMSGKKDCLVNIG 264
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 35.8 bits (83), Expect = 0.030
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 103 KKPGVLIPIPQYP----LYSASLAEFNMEQIGY-YLDESKQWGLPISELERSITEARKHC 157
K +P +P +Y + + Y YL + + + S ++ I A +
Sbjct: 144 PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKS 203
Query: 158 NPRAIVIINPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
I + + NP+G T+ ++++ +K F D YQ
Sbjct: 204 ----IFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQ 245
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 35.4 bits (81), Expect = 0.039
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 141 LPISELERSITEARKHCNPRAIVIINPGNPT-GQVLTKENIQDIIKFAHREKLFLFADEV 199
+ LER I E + N IV N GQ ++ N++ + A + + + D
Sbjct: 167 FDLEGLERGIEEVGPN-NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSA 225
Query: 200 -YQDNVYAEGSKFYSFKKVLV-----EMGEPYKSMELASFMSCSKGYMGECG 245
+ +N Y + +K + E + + MS K M G
Sbjct: 226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADML----AMSAKKDAMVPMG 273
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 35.2 bits (82), Expect = 0.041
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 17/120 (14%)
Query: 66 ISRRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFN 125
G W +I++ G SD VL LI + + P Y Y
Sbjct: 74 AGELYGFDPSW--IIMANG-SDE---VLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQG 127
Query: 126 MEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIK 185
+ L + + + + P P G E I ++ +
Sbjct: 128 ARVRTFGLTG--DFRIAGFPERY---------EGKVFFLTTPNAPLGPSFPLEYIDELAR 176
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 34.1 bits (79), Expect = 0.11
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 93 LKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQIGYY--LDESKQWGLPISELERSI 150
L + K V + P + ++ + I Y D K+ GL + +
Sbjct: 119 LARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKR-GLDLQGFLSDL 177
Query: 151 TEARKHCNPRAIVIINPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
A + I +++ NPTG T E + I R LF F D YQ
Sbjct: 178 ENAPEFS----IFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ 226
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1
PDB: 2cwn_A 1f05_A
Length = 331
Score = 33.8 bits (77), Expect = 0.12
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 31/128 (24%)
Query: 334 SREKQSVLDSLKQRAKMVADT--FNSIE-----GMSCNP------VQGAMYAFPQMKLPA 380
S +S LD LKQ +VADT FN+I+ + NP Q Y +L
Sbjct: 5 SSGMESALDQLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQ----ELVE 60
Query: 381 KAIAKAKAEGKCP--SVLYAFELLERTGIC----IVPGAGFGQVPGTYHFRQQVWWRHYT 434
+AIA K G + A + L +PG +V F
Sbjct: 61 EAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFD--------K 112
Query: 435 QRAIAKAK 442
+A+A+
Sbjct: 113 DAMVARAR 120
>3tkf_A Transaldolase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta barrel/TIM barrel;
HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB:
3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Length = 345
Score = 33.4 bits (76), Expect = 0.17
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 17/135 (12%)
Query: 321 NPPQPGEPSYEQFSREKQSVLDSLKQRAKMVADT--FNSIE-----GMSCNP------VQ 367
E Y Q + ++SVL+ LKQ +VADT F I+ + NP V+
Sbjct: 10 GVDLGTENLYFQSNAMQKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVK 69
Query: 368 GAMYAFPQMKLPAKAIAKAKAEGKCPSVLYAFELLERTGICIVPGAGFGQVPGTYHFRQQ 427
Y+ L A+ I+K KA + + + + + G
Sbjct: 70 EQKYS----NLVAETISKVKANNPDLNSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVD 125
Query: 428 VWWRHYTQRAIAKAK 442
+ I AK
Sbjct: 126 ARVSFNSATTIDYAK 140
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 33.0 bits (76), Expect = 0.21
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 107 VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI 164
V + P + + A Y+ +E+K L ++ +I +A + I +
Sbjct: 127 VYLSKPTWANHMAIFENQGLKTATYPYWANETK--SLDLNGFLNAIQKAPEGS----IFV 180
Query: 165 INPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
++ NPTG T E I+ + D YQ
Sbjct: 181 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ 219
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 32.6 bits (75), Expect = 0.27
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 107 VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI 164
+ + P Y + FN++ I ++ + + + VI
Sbjct: 125 LYVTNPPYINHVNMIESRGFNLKYINFFDYNLI--DINYDLFLNDLRNIP----NGSSVI 178
Query: 165 INPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
+ NP + ++ +II+ +K + D YQ
Sbjct: 179 LQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ 217
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 32.6 bits (75), Expect = 0.27
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 107 VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI 164
+ P YP + + + A + YY +K GL ++ + + +A ++++
Sbjct: 134 IYGPDVGYPNHESIFAKAGMELTPYSYYDPATK--GLNLAGMLECLDKAP----EGSVIL 187
Query: 165 INPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
++ NPTG T ++ + + R F D YQ
Sbjct: 188 VHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ 226
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 32.6 bits (75), Expect = 0.29
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 107 VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI 164
V + P + + A + A F + +Y + + G+ ++L ++ + +IV+
Sbjct: 124 VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATN--GVRFNDLLATLKTLQ----AGSIVL 177
Query: 165 INPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
++P NPTG LT + +I+ +L F D YQ
Sbjct: 178 LHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ 216
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 32.2 bits (74), Expect = 0.41
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 107 VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI 164
V + P +P + + + A + + YY E+ L L S+ EA+ +V+
Sbjct: 123 VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENH--TLDFDALINSLNEAQ----AGDVVL 176
Query: 165 INPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
+ NPTG T E Q + + + + D YQ
Sbjct: 177 FHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ 215
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 32.2 bits (74), Expect = 0.41
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 107 VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI 164
V +P P + ++ A ++ YY ++ L + I++ + I++
Sbjct: 126 VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTC--SLDFTGAMEDISKIPEKS----IIL 179
Query: 165 INPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
++ NPTG +E +++ + L + D YQ
Sbjct: 180 LHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ 218
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 31.8 bits (73), Expect = 0.54
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 107 VLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVI 164
V I P + + A +A F + YY ++ G+ + ++ P IV+
Sbjct: 146 VAISDPSWENHRALFDMAGFEVVAYPYYDAKTN--GVNFDGMLAALNGYE----PGTIVV 199
Query: 165 INPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
++ NPTG L +++ +L F D YQ
Sbjct: 200 LHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQ 238
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 31.8 bits (73), Expect = 0.61
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 103 KKPGVLIPIPQYPLYSA--SLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR 160
V + P +P + + + ++ Y+ E++ G+ ++ + A+
Sbjct: 116 PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETR--GVDFEGMKADLAAAK----KG 169
Query: 161 AIVIINPG--NPTGQVLTKENIQDIIKFAHREKLFLFADEVYQ 201
+V+++ NPTG LT + +I + D YQ
Sbjct: 170 DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQ 212
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 31.4 bits (72), Expect = 0.72
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 141 LPISELERSITEARKHC-NPRAIVIINPGNPT--GQVLTKENIQDIIKFAHREKLFLFAD 197
L I L E + + T G + T + I+ I L L D
Sbjct: 121 LDIVRLRERTREKVGDVHTTQPACVSIT-QATEVGSIYTLDEIEAIGDVCKSSSLGLHMD 179
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE;
1.90A {Prochlorococcus marinus str}
Length = 334
Score = 31.4 bits (71), Expect = 0.73
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 338 QSVLDSLKQRAKMVADT--FNSIE-----GMSCNP------VQGAMYAFPQMKLPAKAIA 384
+S+L+ L +VADT +SI+ + NP + Y KL KAI
Sbjct: 3 KSILEQLSSMTVVVADTGDLDSIKKFQPRDATTNPSLILAAAKNPDYV----KLIDKAIE 58
Query: 385 KAKAEGK 391
++
Sbjct: 59 SSENTLP 65
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 31.2 bits (70), Expect = 0.85
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 13/155 (8%)
Query: 51 DSPGIEIIRRHVAQYIS---RRDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGV 107
+ G I+ + + ++ G +S G S L L V
Sbjct: 124 KASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMS----ISLCLSAARKKYGSNVV 179
Query: 108 LIP-IPQYPLY-SASLAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPRAIVII 165
+ P + S NM + LD + +P+ ++E +I + + N ++
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDG-DRVYVPVEDIENAIKKEIELGNRPCVLST 238
Query: 166 NPGNPTGQVLTKENIQDIIKFAHREKLFLFADEVY 200
P ++I +I K + + Y
Sbjct: 239 LTFFPPRNS---DDIVEIAKICENYDIPHIINGAY 270
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural
genomics, PSI-2, protein structure initiative; 2.79A
{Oleispira antarctica}
Length = 329
Score = 30.7 bits (69), Expect = 1.00
Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 36/161 (22%)
Query: 334 SREKQSVLDSLKQRAKMVADT--FNSIE-----GMSCNP------VQGAMYAFPQMKLPA 380
S + ++ L++LK +VADT +I+ + NP + A Y L
Sbjct: 3 SAQAKNKLEALKAMTTVVADTGDIEAIKQFKPVDATTNPSLILKAAKLANYQ----HLIE 58
Query: 381 KAIAKAKAEG-----KCPSVLYAFELLERTGIC----IVPGAGFGQVPGTYHFRQQVWWR 431
+AI A ++ + L C +PG +V F Q
Sbjct: 59 EAIDWALQIKGNDKNSQTTLENVGDKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATVA 118
Query: 432 H-------YTQRAIAKAKAEGKCPSV---LYAFESLERTGI 462
Y I + K S + A + LE GI
Sbjct: 119 KARKLIRLYQDAGIDSDRILIKIASTWEGIQAAKILEAEGI 159
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 29.2 bits (66), Expect = 4.4
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 121 LAEFNMEQIGYYLDESKQWGLPISELERSITEARKHCNPR 160
LA + + + +S + + I L + I ARK+ P+
Sbjct: 485 LANY---ILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPK 521
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A
{Artificial gene}
Length = 121
Score = 27.5 bits (62), Expect = 4.9
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 143 ISELERSITEARKHCNPRAIVIINPGNPTGQVLTKENIQDIIKFAHRE 190
I+E+++ E ++ TG T+E +D++K E
Sbjct: 2 INEIKKDAQERMDKSVEALKNNLSK-VRTGGGGTEERRKDLVKIVRGE 48
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 27.6 bits (61), Expect = 6.2
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 423 HFRQQVWWRHYTQRAIAKAKAEGK 446
+ W Y + A+ +K + K
Sbjct: 26 IAAANLQWESYAE-ALEHSKQDHK 48
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether
bond, OXY storage-transport complex; HET: NDG NAG BMA
MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Length = 394
Score = 27.9 bits (61), Expect = 8.0
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 69 RDGQPADWQDVILSAGASDGIKSVLKLLIEDVDGKKPGVLIPIPQYPLYSASLAEFNMEQ 128
+ Q + + + LK D + F+ +
Sbjct: 211 QALQKYRGLPYNTANCEINKLVKPLKPFNLDTNPNAVTKAHSTGATS--------FDYHK 262
Query: 129 IGYYLDESKQWGLPISELERSITEARKH 156
+GY D G+ I ELE + E +
Sbjct: 263 LGYDYDNLNFHGMTIPELEEHLKEIQHE 290
>1ypx_A Putative vitamin-B12 independent methionine synth protein;
alpha-beta protein; 2.60A {Listeria monocytogenes}
Length = 375
Score = 27.8 bits (62), Expect = 8.7
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 479 FRTTI---LPQPEKLKAMLEKFRE 499
F + + + +K EKF+
Sbjct: 7 FYADHVGSILRTKGIKDAREKFQS 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,061,717
Number of extensions: 503585
Number of successful extensions: 1520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1408
Number of HSP's successfully gapped: 171
Length of query: 509
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 411
Effective length of database: 3,965,535
Effective search space: 1629834885
Effective search space used: 1629834885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)