BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13925
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 78/99 (78%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYISL MAI +P KML LS+IY++I D FPYYR N QRWQNS+RH+LSFNDCFV
Sbjct: 3 KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 62
Query: 73 KIPRRPDRPGKGAYWALHPNALDMFENGSXXXXXXXFKL 111
K+ R PD+PGKG+YWALHP++ +MFENG FKL
Sbjct: 63 KVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKL 101
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 72/89 (80%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI ++PEK + L+ IY+FI DRFP+YR N Q WQNS+RHNLS N+CFV
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 73 KIPRRPDRPGKGAYWALHPNALDMFENGS 101
K+PR +PGKG+YW L P++ +MFENGS
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGS 92
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 66/89 (74%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62
Query: 73 KIPRRPDRPGKGAYWALHPNALDMFENGS 101
KIPR P PGKG YW L P + DMF+NGS
Sbjct: 63 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 91
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 66/89 (74%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 73 KIPRRPDRPGKGAYWALHPNALDMFENGS 101
KIPR P PGKG YW L P + DMF+NGS
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 90
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor
1 Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor
1 Bound To Dna
Length = 111
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
D KPPYSY L AI +P+K L L+ IY I +PYYR + WQNS+RHNLS N
Sbjct: 14 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRY 73
Query: 71 FVKIPRRPDRPGKGAYWALHP 91
F+K+PR + PGKG++W + P
Sbjct: 74 FIKVPRSQEEPGKGSFWRIDP 94
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
D KPPYSY L AI +P+K L L+ IY I +PYYR + WQNS+RHNLS N
Sbjct: 1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRY 60
Query: 71 FVKIPRRPDRPGKGAYWALHP 91
F+K+PR + PGKG++W + P
Sbjct: 61 FIKVPRSQEEPGKGSFWRIDP 81
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI S L L++I ++ +FP++R + W+NS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 73 KIPRRPDRP-GKGAYWALHPNALDMFENG 100
K+ R P RP GK YW L+PN+ F +G
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADG 90
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding
Domain Of Myocyte Nuclear Factor
Length = 101
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
+ KPPYSY L AI S+ ++ L LS IY I +PYYR + WQNS+RHNLS N
Sbjct: 1 ESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRY 60
Query: 71 FVKIPRRPDRPGKGAYWALHP 91
F+K+PR + PGKG++W + P
Sbjct: 61 FIKVPRSQEEPGKGSFWRIDP 81
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQ-RWQNSLRHNLSFNDC 70
++PPYSY+++ AI S+ K + L DIY +I D FPY++ + W+NS+RHNLS +D
Sbjct: 17 ERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDM 76
Query: 71 FVKIPRRPDRPGKGAYWALHPNA 93
FV R GK ++W +HP+A
Sbjct: 77 FV---RETSANGKVSFWTIHPSA 96
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y SL AI SPEK L L++IY + FPY+RRN W+N++RHNLS + FV
Sbjct: 4 RPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYFV 63
Query: 73 KIPRRPDRPGKGAYWAL 89
++ KGA W +
Sbjct: 64 RVENV-----KGAVWTV 75
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 69.7 bits (169), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y +L AI S ++ L L++IY + F Y+RRN W+N++RHNLS + CFV
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62
Query: 73 KIPRRPDRPGKGAYWAL 89
++ KGA W +
Sbjct: 63 RVENV-----KGAVWTV 74
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 64.3 bits (155), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y +L AI +PEK L++IY + F ++R + W+N++RHNLS + CFV
Sbjct: 2 RPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCFV 61
Query: 73 KIPRRPDRPGKGAYWAL 89
++ KGA W +
Sbjct: 62 RVESE-----KGAVWTV 73
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 11/93 (11%)
Query: 6 RDTYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R+ +G+Q SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS
Sbjct: 37 RNAWGNQ----SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNS 92
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPNA 93
+RHNLS + F+K+ + GK ++W L+P
Sbjct: 93 IRHNLSLHSKFIKV--HNEATGKSSWWMLNPEG 123
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 61.2 bits (147), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 11/91 (12%)
Query: 6 RDTYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R+ +G+Q SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS
Sbjct: 21 RNAWGNQ----SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNS 76
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91
+RHNLS + F+K+ + GK ++W L+P
Sbjct: 77 IRHNLSLHSKFIKV--HNEATGKSSWWMLNP 105
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 6 RDTYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R+ +G+ SY L AI SS EK L LS IY ++ PY++ ++ W+NS
Sbjct: 8 RNAWGN----LSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNS 63
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPNA 93
+RHNLS + F+++ + + GK ++W L+P
Sbjct: 64 IRHNLSLHSKFIRV--QNEGTGKSSWWMLNPEG 94
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 6 RDTYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R+ +G+ SY L AI SS EK L LS IY ++ PY++ ++ W+NS
Sbjct: 8 RNAWGN----LSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNS 63
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPNA 93
+RHNLS + F+++ + + GK ++W L+P
Sbjct: 64 IRHNLSLHSKFIRV--QNEGTGKSSWWMLNPEG 94
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 11/93 (11%)
Query: 6 RDTYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R+ +G+ SY L AI SSP+K L LS IY ++ PY++ ++ W+NS
Sbjct: 6 RNAWGN----LSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNS 61
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPNA 93
+RHNLS + F+++ + + GK ++W ++P+
Sbjct: 62 IRHNLSLHSRFMRV--QNEGTGKSSWWIINPDG 92
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 17 SYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNLSFNDCF 71
SY L AI SSP+K L LS IY ++ PY++ ++ W+NS+RHNLS + F
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 64
Query: 72 VKIPRRPDRPGKGAYWALHPNA 93
+++ + + GK ++W ++P+
Sbjct: 65 MRV--QNEGTGKSSWWIINPDG 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,637,252
Number of Sequences: 62578
Number of extensions: 358855
Number of successful extensions: 712
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 18
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)