Query psy13925
Match_columns 344
No_of_seqs 177 out of 817
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 23:59:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 5.1E-43 1.7E-47 289.6 6.4 101 11-111 1-101 (102)
2 2hdc_A Protein (transcription 100.0 9.2E-43 3.2E-47 285.8 3.4 97 12-108 1-97 (97)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 1.9E-42 6.4E-47 285.3 4.8 98 12-109 1-99 (100)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 3.7E-42 1.3E-46 287.6 5.0 101 12-112 2-102 (109)
5 2c6y_A Forkhead box protein K2 100.0 9E-42 3.1E-46 286.0 3.7 100 9-108 12-111 (111)
6 3coa_C Forkhead box protein O1 100.0 3.6E-37 1.2E-41 260.2 5.2 91 10-105 8-103 (117)
7 3l2c_A Forkhead box protein O4 100.0 2.1E-36 7.1E-41 253.0 5.3 90 3-94 14-108 (110)
8 1e17_A AFX; DNA binding domain 100.0 1.9E-36 6.5E-41 265.3 3.9 94 10-108 37-135 (150)
9 3bpy_A FORK head domain, forkh 100.0 5.2E-36 1.8E-40 240.4 5.0 78 11-90 3-85 (85)
10 2a07_F Forkhead box protein P2 100.0 5.7E-36 1.9E-40 244.1 0.3 78 12-94 2-79 (93)
11 3g73_A Forkhead box protein M1 100.0 5.6E-34 1.9E-38 247.7 4.4 96 8-106 13-110 (142)
12 1uss_A Histone H1; DNA binding 78.8 2.1 7.1E-05 33.8 4.1 32 17-48 9-41 (88)
13 1uhm_A Histone H1, histone HHO 77.0 2.1 7E-05 32.9 3.5 33 17-49 6-39 (78)
14 1hst_A Histone H5; chromosomal 73.3 3 0.0001 33.2 3.7 32 17-48 9-41 (90)
15 2rqp_A Heterochromatin protein 69.4 2.1 7.3E-05 33.5 2.0 33 17-49 11-44 (88)
16 1ust_A Histone H1; DNA binding 68.8 3.2 0.00011 33.2 2.9 32 17-48 9-41 (93)
17 2lso_A Histone H1X; structural 52.7 4.1 0.00014 31.8 0.0 32 17-48 7-39 (83)
18 1ghc_A GH1; chromosomal protei 23.3 12 0.0004 28.1 -1.0 30 17-46 5-35 (75)
19 4aw0_A HPDK1, 3-phosphoinositi 22.1 24 0.00081 33.1 0.7 38 18-58 261-300 (311)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=5.1e-43 Score=289.58 Aligned_cols=101 Identities=69% Similarity=1.279 Sum_probs=97.7
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccccccccCCCCCCCCcceEEeC
Q psy13925 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALH 90 (344)
Q Consensus 11 ~~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~~GWKNSIRHNLSlNk~FvKVpR~~~~pGKGs~W~l~ 90 (344)
++||||||++||+|||+++|+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||+|..+++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCchhhcccCccccccccccc
Q psy13925 91 PNALDMFENGSLLRRRRRFKL 111 (344)
Q Consensus 91 pea~~~fe~G~~rRRRrr~k~ 111 (344)
|++.++|++|.++|||+|.+.
T Consensus 81 p~~~~~f~~g~~~rr~~~~~~ 101 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQKRFKL 101 (102)
T ss_dssp GGGCSTTCSSCSSSCSSCCCC
T ss_pred cCHHHHhhcCCeecccccccc
Confidence 999999999999999988764
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=9.2e-43 Score=285.76 Aligned_cols=97 Identities=66% Similarity=1.223 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccccccccCCCCCCCCcceEEeCC
Q psy13925 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91 (344)
Q Consensus 12 ~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~~GWKNSIRHNLSlNk~FvKVpR~~~~pGKGs~W~l~p 91 (344)
.||||||++||+|||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|..+++|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 49999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CchhhcccCcccccccc
Q psy13925 92 NALDMFENGSLLRRRRR 108 (344)
Q Consensus 92 ea~~~fe~G~~rRRRrr 108 (344)
+++++|++|.++|||+|
T Consensus 81 ~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred CHHHHHhCCCccCCCCC
Confidence 99999999999888875
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.9e-42 Score=285.29 Aligned_cols=98 Identities=50% Similarity=0.973 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccccccccCCCCCC-CCcceEEeC
Q psy13925 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRP-GKGAYWALH 90 (344)
Q Consensus 12 ~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~~GWKNSIRHNLSlNk~FvKVpR~~~~p-GKGs~W~l~ 90 (344)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|..+++ |||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999999999998887 999999999
Q ss_pred CCchhhcccCccccccccc
Q psy13925 91 PNALDMFENGSLLRRRRRF 109 (344)
Q Consensus 91 pea~~~fe~G~~rRRRrr~ 109 (344)
|+++++|++|.++|||+|+
T Consensus 81 p~~~~~f~~g~~~rrr~r~ 99 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYRL 99 (100)
T ss_dssp C------------------
T ss_pred cCHHHHHhCCCcccCCCCC
Confidence 9999999999999988875
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=3.7e-42 Score=287.63 Aligned_cols=101 Identities=65% Similarity=1.211 Sum_probs=90.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccccccccCCCCCCCCcceEEeCC
Q psy13925 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91 (344)
Q Consensus 12 ~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~~GWKNSIRHNLSlNk~FvKVpR~~~~pGKGs~W~l~p 91 (344)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+++|||||||||||||+||+||+|..+++|||+||+|+|
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhcccCcccccccccccc
Q psy13925 92 NALDMFENGSLLRRRRRFKLM 112 (344)
Q Consensus 92 ea~~~fe~G~~rRRRrr~k~~ 112 (344)
+++++|++|.++|||++.+..
T Consensus 82 ~~~~~f~~g~~~Rrr~~~~~~ 102 (109)
T 2hfh_A 82 QSEDMFDNGSFLRRRKRFKRL 102 (109)
T ss_dssp TCCHHHHSSSCC---------
T ss_pred cHHHHHhCCCcccCccccccc
Confidence 999999999999988876643
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=9e-42 Score=286.00 Aligned_cols=100 Identities=44% Similarity=0.880 Sum_probs=95.2
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccccccccCCCCCCCCcceEE
Q psy13925 9 YGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWA 88 (344)
Q Consensus 9 ~~~~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~~GWKNSIRHNLSlNk~FvKVpR~~~~pGKGs~W~ 88 (344)
..++||||||++||++||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|..+++|||+||+
T Consensus 12 ~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~ 91 (111)
T 2c6y_A 12 GSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWR 91 (111)
T ss_dssp --CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEE
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred eCCCchhhcccCcccccccc
Q psy13925 89 LHPNALDMFENGSLLRRRRR 108 (344)
Q Consensus 89 l~pea~~~fe~G~~rRRRrr 108 (344)
|+|+++++|++|.++|||+|
T Consensus 92 l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 92 IDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp ECHHHHHHHHHHHTCCCCCC
T ss_pred eChhHHHhhhcccccccCCC
Confidence 99999999999999888765
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=3.6e-37 Score=260.24 Aligned_cols=91 Identities=36% Similarity=0.685 Sum_probs=76.3
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCc-----cccccccccccccccccccccCCCCCCCCc
Q psy13925 10 GDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNT-----QRWQNSLRHNLSFNDCFVKIPRRPDRPGKG 84 (344)
Q Consensus 10 ~~~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~-----~GWKNSIRHNLSlNk~FvKVpR~~~~pGKG 84 (344)
.+.||||||++||+|||+++|+++|||+|||+||+++||||++++ .|||||||||||||+||+||+| +++|||
T Consensus 8 ~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~--~~~GKg 85 (117)
T 3coa_C 8 RNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN--EGTGKS 85 (117)
T ss_dssp CBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECC--SSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhccccc--CCCCCc
Confidence 567999999999999999999999999999999999999999886 7999999999999999999987 468999
Q ss_pred ceEEeCCCchhhcccCccccc
Q psy13925 85 AYWALHPNALDMFENGSLLRR 105 (344)
Q Consensus 85 s~W~l~pea~~~fe~G~~rRR 105 (344)
+||+|+|++. +.|+.+||
T Consensus 86 ~~W~l~p~~~---~~~~~~Rr 103 (117)
T 3coa_C 86 SWWMLNPEGG---KSGKSPRR 103 (117)
T ss_dssp CEEEECC--------------
T ss_pred ceEEECcccc---ccCccccc
Confidence 9999999986 34444443
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=2.1e-36 Score=253.00 Aligned_cols=90 Identities=33% Similarity=0.633 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccC-----ccccccccccccccccccccccCC
Q psy13925 3 RPCRDTYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRN-----TQRWQNSLRHNLSFNDCFVKIPRR 77 (344)
Q Consensus 3 r~~R~~~~~~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~-----~~GWKNSIRHNLSlNk~FvKVpR~ 77 (344)
|+.+..-.+.||||||++||+|||+++|+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+|.
T Consensus 14 ~~~~~~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~ 93 (110)
T 3l2c_A 14 PRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE 93 (110)
T ss_dssp ------CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC
T ss_pred CCCCccCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCC
Confidence 344445567899999999999999999999999999999999999999987 469999999999999999999874
Q ss_pred CCCCCCcceEEeCCCch
Q psy13925 78 PDRPGKGAYWALHPNAL 94 (344)
Q Consensus 78 ~~~pGKGs~W~l~pea~ 94 (344)
++|||+||+|+|+++
T Consensus 94 --~~GKG~~W~l~p~~~ 108 (110)
T 3l2c_A 94 --ATGKSSWWMLNPEGG 108 (110)
T ss_dssp --STTCCCEEEEC----
T ss_pred --CCCCCceEEECcccc
Confidence 689999999999985
No 8
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=1.9e-36 Score=265.29 Aligned_cols=94 Identities=36% Similarity=0.690 Sum_probs=78.4
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCc-----cccccccccccccccccccccCCCCCCCCc
Q psy13925 10 GDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNT-----QRWQNSLRHNLSFNDCFVKIPRRPDRPGKG 84 (344)
Q Consensus 10 ~~~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~-----~GWKNSIRHNLSlNk~FvKVpR~~~~pGKG 84 (344)
.+.||||||++||+|||+++|+++|||+|||+||+++||||++++ .|||||||||||||+||+||+| +++|||
T Consensus 37 rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r--~~~GKG 114 (150)
T 1e17_A 37 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKS 114 (150)
T ss_dssp CCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC--TTTSSS
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC--CCCCCc
Confidence 467899999999999999999999999999999999999999764 7999999999999999999988 578999
Q ss_pred ceEEeCCCchhhcccCcccccccc
Q psy13925 85 AYWALHPNALDMFENGSLLRRRRR 108 (344)
Q Consensus 85 s~W~l~pea~~~fe~G~~rRRRrr 108 (344)
+||+|+|+++ +.|+.+|||+.
T Consensus 115 ~~W~ldp~~~---~~gk~~Rrr~~ 135 (150)
T 1e17_A 115 SWWMLNPEGG---KSGKAPRRRAA 135 (150)
T ss_dssp CEEEECTTCC--------------
T ss_pred ceEEECcccc---cCCcccccccc
Confidence 9999999986 45665555543
No 9
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=240.37 Aligned_cols=78 Identities=37% Similarity=0.729 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCc-----cccccccccccccccccccccCCCCCCCCcc
Q psy13925 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNT-----QRWQNSLRHNLSFNDCFVKIPRRPDRPGKGA 85 (344)
Q Consensus 11 ~~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~-----~GWKNSIRHNLSlNk~FvKVpR~~~~pGKGs 85 (344)
+.||||||++||+|||+++|+++|||+|||+||+++||||+.++ .|||||||||||||+||+||+|. ++|||+
T Consensus 3 n~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~~GKg~ 80 (85)
T 3bpy_A 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--ATGKSS 80 (85)
T ss_dssp BTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--STTCCC
T ss_pred CCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCC--CCCCCC
Confidence 57999999999999999999999999999999999999999874 59999999999999999999874 689999
Q ss_pred eEEeC
Q psy13925 86 YWALH 90 (344)
Q Consensus 86 ~W~l~ 90 (344)
||+||
T Consensus 81 ~W~ld 85 (85)
T 3bpy_A 81 WWMLN 85 (85)
T ss_dssp EEEEC
T ss_pred ceecC
Confidence 99996
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=5.7e-36 Score=244.07 Aligned_cols=78 Identities=38% Similarity=0.871 Sum_probs=74.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccccccccCCCCCCCCcceEEeCC
Q psy13925 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91 (344)
Q Consensus 12 ~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~~~~GWKNSIRHNLSlNk~FvKVpR~~~~pGKGs~W~l~p 91 (344)
+||||||++||++||+++|+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++ |||+||+|++
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 69999999999999999999999999999999999999999999999999999999999999963 7999999998
Q ss_pred Cch
Q psy13925 92 NAL 94 (344)
Q Consensus 92 ea~ 94 (344)
++.
T Consensus 77 ~~~ 79 (93)
T 2a07_F 77 VEY 79 (93)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.98 E-value=5.6e-34 Score=247.70 Aligned_cols=96 Identities=36% Similarity=0.747 Sum_probs=80.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccc-CccccccccccccccccccccccCCCCCCCCcce
Q psy13925 8 TYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRR-NTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAY 86 (344)
Q Consensus 8 ~~~~~KPPySYa~LIa~AI~sSP~krLTLsEIYewI~~~fPYyr~-~~~GWKNSIRHNLSlNk~FvKVpR~~~~pGKGs~ 86 (344)
...++||||||++||+|||+++|+++|||+|||+||+++|||||. +..|||||||||||+|+||+|+ .+++|||+|
T Consensus 13 ~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~---~~~~GKg~~ 89 (142)
T 3g73_A 13 NSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRE---TSANGKVSF 89 (142)
T ss_dssp -CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEE---ECTTSCCEE
T ss_pred ccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheec---CCCCCCCce
Confidence 446889999999999999999999999999999999999999998 8899999999999999999987 356899999
Q ss_pred EEeCCCchhhc-ccCcccccc
Q psy13925 87 WALHPNALDMF-ENGSLLRRR 106 (344)
Q Consensus 87 W~l~pea~~~f-e~G~~rRRR 106 (344)
|+|+|+++..+ .++.+++.+
T Consensus 90 W~i~p~~~~~l~~d~~~k~~~ 110 (142)
T 3g73_A 90 WTIHPSANRYLTLDQVFKPLD 110 (142)
T ss_dssp EEECTTTCCCCCCC-------
T ss_pred EEECccccccchhhhhhcccc
Confidence 99999997544 444444433
No 12
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=78.81 E-value=2.1 Score=33.78 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy13925 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (344)
Q Consensus 17 SYa~LIa~AI~sSP-~krLTLsEIYewI~~~fP 48 (344)
+|..||..||.... .+..++..|..||+.+|+
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS 41 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 89999999998754 457899999999999975
No 13
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=76.99 E-value=2.1 Score=32.91 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcC-CCCCCCHHHHHHHHHhcCCC
Q psy13925 17 SYISLTAMAIWSS-PEKMLPLSDIYRFIADRFPY 49 (344)
Q Consensus 17 SYa~LIa~AI~sS-P~krLTLsEIYewI~~~fPY 49 (344)
+|.+||..||... ..+.-++..|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 8999999999864 45568999999999999763
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=73.26 E-value=3 Score=33.17 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy13925 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (344)
Q Consensus 17 SYa~LIa~AI~sSP-~krLTLsEIYewI~~~fP 48 (344)
+|.+||..||.... .+.-++..|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 89999999999755 447899999999999976
No 15
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=69.45 E-value=2.1 Score=33.52 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCCC
Q psy13925 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFPY 49 (344)
Q Consensus 17 SYa~LIa~AI~sSP-~krLTLsEIYewI~~~fPY 49 (344)
+|.+||..||.... .+.-++..|..||+.+|+-
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~ 44 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPS 44 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCST
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 89999999998633 4567999999999999873
No 16
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=68.84 E-value=3.2 Score=33.17 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy13925 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (344)
Q Consensus 17 SYa~LIa~AI~sSP-~krLTLsEIYewI~~~fP 48 (344)
+|..||..||.... .+.-++..|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYP 41 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCC
Confidence 89999999999755 457899999999999975
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=52.67 E-value=4.1 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy13925 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (344)
Q Consensus 17 SYa~LIa~AI~sSP-~krLTLsEIYewI~~~fP 48 (344)
+|..||..||.... .+.-++..|..+|++++.
T Consensus 7 ~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 7 KYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 99999999998744 446788899999998874
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=23.26 E-value=12 Score=28.13 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhc
Q psy13925 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADR 46 (344)
Q Consensus 17 SYa~LIa~AI~sSP-~krLTLsEIYewI~~~ 46 (344)
+|..||..||.... .+..++.-|..+|+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 79999999998754 4567888999999998
No 19
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=22.14 E-value=24 Score=33.12 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCCCHHHH--HHHHHhcCCCcccCccccc
Q psy13925 18 YISLTAMAIWSSPEKMLPLSDI--YRFIADRFPYYRRNTQRWQ 58 (344)
Q Consensus 18 Ya~LIa~AI~sSP~krLTLsEI--YewI~~~fPYyr~~~~GWK 58 (344)
-..||...+.-.|.+|+|..|+ ++||.+| |||+.- .|+
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~H-p~F~~i--dw~ 300 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKAH-PFFESV--TWE 300 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHTS-GGGTTC--CCT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHCC-CCcCCC--CHH
Confidence 4578999999999999999998 6788754 999753 365
Done!