RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13925
(344 letters)
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 151 bits (383), Expect = 1e-46
Identities = 44/98 (44%), Positives = 59/98 (60%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
D KPPYSY L AI +P+K L L+ IY I +PYYR + WQNS+RHNLS N
Sbjct: 1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRY 60
Query: 71 FVKIPRRPDRPGKGAYWALHPNALDMFENGSLLRRRRR 108
F+K+PR + PGKG++W + P + + +RR R
Sbjct: 61 FIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 151 bits (382), Expect = 2e-46
Identities = 64/96 (66%), Positives = 72/96 (75%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 73 KIPRRPDRPGKGAYWALHPNALDMFENGSLLRRRRR 108
KIPR P PGKG YW L P + DMF+NGS LRRR+R
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 143 bits (363), Expect = 1e-43
Identities = 58/91 (63%), Positives = 73/91 (80%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI ++PEK + L+ IY+FI DRFP+YR N Q WQNS+RHNLS N+CFV
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 73 KIPRRPDRPGKGAYWALHPNALDMFENGSLL 103
K+PR +PGKG+YW L P++ +MFENGS L
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 75
Score = 116 bits (291), Expect = 3e-33
Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 18 YISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRR 77
YI+L MAI S L L++I ++ +FP++R + W+NS+RHNLS NDCFVK+ R
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 78 PDRP-GKGAYWALHP 91
P RP GK YW L+P
Sbjct: 61 PSRPWGKDNYWMLNP 75
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 114 bits (286), Expect = 2e-32
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y +L AI S ++ L L++IY + F Y+RRN W+N++RHNLS + CFV
Sbjct: 2 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 61
Query: 73 KIPRRPDRPGKGAYWALHPNA 93
++ KGA W +
Sbjct: 62 RVEN-----VKGAVWTVDEVE 77
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 110 bits (277), Expect = 3e-31
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNLSF 67
SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS+RHNLS
Sbjct: 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSL 64
Query: 68 NDCFVKIPRRPDRPGKGAYWALH 90
+ F+K+ + GK ++W L+
Sbjct: 65 HSKFIKVHN--EATGKSSWWMLN 85
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 27.0 bits (60), Expect = 3.6
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 279 HPSYFPTQPNLLRFPPLSYPSIPSSLLHPFSLKSCSTFLAATISPWFSLGILPSLCVCNI 338
P +FP + P ++YP I L P+ + I + I+P + +
Sbjct: 83 TP-FFPDKIQKSFLPSINYPQI----LAPY---APEVNYNDKIKKVYIEKIIPLISKRDG 134
Query: 339 DQWTN 343
D N
Sbjct: 135 DDKNN 139
>d3ci0j1 d.24.1.5 (J:39-192) Pseudopilin GspJ {Escherichia coli
[TaxId: 562]}
Length = 154
Score = 26.0 bits (57), Expect = 4.8
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 16/62 (25%)
Query: 1 MPRPCRDTYGDQKPPYSY-----------ISLTAMAIWSSPEKMLPLSDI----YRFIAD 45
MPRP R G ++P + +P LP S++ YR
Sbjct: 21 MPRPVRGDQGQREPALLAGAGVLASESEGMRFVR-GGVVNPLMRLPRSNLLTVGYRIHDG 79
Query: 46 RF 47
Sbjct: 80 YL 81
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 26.5 bits (58), Expect = 6.4
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 93 ALDMFENGSLLR--RRRRFKLMK-----SDKDKLENELAALANVNRIYLSSQSPTTSDDF 145
+ + R F +K + KD AL +++ ++ + D+
Sbjct: 385 IFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDEN 444
Query: 146 EHPESPISNFDEDEEIDVIHDFSPKTLDYSLKNL 179
I + ++ + + SP + Y+ + L
Sbjct: 445 GSRLPAIPRLKDANDVPIQCEISPL-ISYAGEGL 477
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.412
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,328,352
Number of extensions: 62054
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 13
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)