BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13938
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|B Chain B, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|C Chain C, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
Length = 272
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 15/177 (8%)
Query: 8 MPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY 67
MPV +++ YNM+H RG A++FNH+ F + ++ R G+ D NL LGF+V+V+
Sbjct: 16 MPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVF 75
Query: 68 TNPEFREITEILSNLSQEDHSDADCLVITVLTHG-LG----------EQKLWLPFTADKC 116
N + EI + + ++ DHSDADCL++ VLTHG LG LW FTADKC
Sbjct: 76 PNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTADKC 135
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAG-VNAYKIPSYADFLIAYSTV 172
TLAGKPK+FFIQAC+G +LDGG+ L + TETD +Y+IP +ADFLIA+STV
Sbjct: 136 PTLAGKPKLFFIQACQGDRLDGGITL---SRTETDGSPSTSYRIPVHADFLIAFSTV 189
>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1
pdb|2NN3|D Chain D, Structure Of Pro-Sf-Caspase-1
Length = 310
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 114/177 (64%), Gaps = 15/177 (8%)
Query: 8 MPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY 67
MPV +++ YNM+H RG A++FNH+ F + ++ R G+ D NL LGF+V+V+
Sbjct: 44 MPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVF 103
Query: 68 TNPEFREITEILSNLSQEDHSDADCLVITVLTHG-LG----------EQKLWLPFTADKC 116
N + EI + + ++ DHSDADCL++ VLT G LG LW FTADKC
Sbjct: 104 PNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFTADKC 163
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAG-VNAYKIPSYADFLIAYSTV 172
TLAGKPK+FFIQAC+G +LDGG+ L + TETD +Y+IP +ADFLIA+STV
Sbjct: 164 PTLAGKPKLFFIQACQGDRLDGGITL---SRTETDGSPSTSYRIPVHADFLIAFSTV 217
>pdb|3SIR|A Chain A, Crystal Structure Of Drice
pdb|3SIR|B Chain B, Crystal Structure Of Drice
pdb|3SIR|C Chain C, Crystal Structure Of Drice
pdb|3SIR|D Chain D, Crystal Structure Of Drice
Length = 259
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 115/173 (66%), Gaps = 13/173 (7%)
Query: 12 KDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPE 71
+ +AEYNM H RG AL+FNH+ F++ + R G+ D +NL L FEV+VY +
Sbjct: 8 RHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCR 67
Query: 72 FREITEILSNLSQEDHSDADCLVITVLTHG-LG-------EQKL---WLPFTADKCRTLA 120
+++I + + ++HSD+DC+++ +L+HG +G + KL W FTA+ C +LA
Sbjct: 68 YKDILRTIEYSASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLA 127
Query: 121 GKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVN-AYKIPSYADFLIAYSTV 172
GKPK+FFIQAC+G +LDGGV + R+ TETD + +YKIP +ADFLIAYSTV
Sbjct: 128 GKPKLFFIQACQGDRLDGGVTM-QRSQTETDGDSSMSYKIPVHADFLIAYSTV 179
>pdb|3SIP|A Chain A, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|C Chain C, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 157
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 98/151 (64%), Gaps = 12/151 (7%)
Query: 12 KDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPE 71
+ +AEYNM H RG AL+FNH+ F++ + R G+ D +NL L FEV+VY +
Sbjct: 8 RHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCR 67
Query: 72 FREITEILSNLSQEDHSDADCLVITVLTHG-LG-------EQKL---WLPFTADKCRTLA 120
+++I + + ++HSD+DC+++ +L+HG +G + KL W FTA+ C +LA
Sbjct: 68 YKDILRTIEYAASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLA 127
Query: 121 GKPKIFFIQACRGTKLDGGVRLVSRANTETD 151
GKPK+FFIQAC+G +LDGGV + R+ TETD
Sbjct: 128 GKPKLFFIQACQGDRLDGGVTM-QRSQTETD 157
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 61 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 120
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 121 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 180
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 181 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 228
>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
pdb|4FEA|B Chain B, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
Length = 247
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 3 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 62
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 63 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 122
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 123 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 170
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 36 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 95
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 96 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 155
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 156 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 203
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 14/170 (8%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 59 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 118
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 119 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 178
Query: 124 KIFFIQACRGTKLDGGVRL-VSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ +S +TDA YKIP ADFL AYSTV
Sbjct: 179 KLFFIQACRGTELDDGIQADMSGPINDTDANP-CYKIPVEADFLFAYSTV 227
>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7
pdb|1K86|B Chain B, Crystal Structure Of Caspase-7
Length = 253
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 9 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 68
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F +C+TL KP
Sbjct: 69 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKP 128
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 129 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 176
>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor
pdb|1SHJ|B Chain B, Caspase-7 In Complex With Dica Allosteric Inhibitor
Length = 262
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 10 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 69
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F +C+TL KP
Sbjct: 70 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKP 129
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 130 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 177
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 59 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 118
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 119 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 178
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQA RGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 179 KLFFIQAARGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 226
>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
Length = 277
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 10 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 69
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 70 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 129
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQACRG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 130 VGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 188
Query: 170 STVE 173
S E
Sbjct: 189 SVAE 192
>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|B Chain B, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|C Chain C, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|D Chain D, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|E Chain E, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|F Chain F, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|G Chain G, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|H Chain H, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
Length = 277
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 10 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 69
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 70 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 129
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQACRG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 130 VGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 188
Query: 170 STVE 173
S E
Sbjct: 189 SVAE 192
>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|B Chain B, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|C Chain C, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|D Chain D, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|F Chain F, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|G Chain G, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|I Chain I, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|J Chain J, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
Length = 279
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 10 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 69
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 70 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 129
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQACRG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 130 VGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 188
Query: 170 STVE 173
S E
Sbjct: 189 SVAE 192
>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation
pdb|3V6L|B Chain B, Crystal Structure Of Caspase-6 Inactivation Mutation
Length = 282
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 13 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 72
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 73 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 132
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQACRG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 133 VGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 191
Query: 170 STVE 173
S E
Sbjct: 192 SVAE 195
>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
Length = 278
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 9 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 68
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 69 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 128
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQACRG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 129 VGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 187
Query: 170 STVE 173
S E
Sbjct: 188 SVAE 191
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 61 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 120
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+ +TL KP
Sbjct: 121 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKP 180
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 181 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 228
>pdb|3PD0|A Chain A, Caspase-3 E246a
Length = 250
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDSGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
Length = 299
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 32 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 91
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 92 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 151
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQACRG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 152 VGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 210
Query: 170 STVE 173
S E
Sbjct: 211 SVAE 214
>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
Length = 293
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 32 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 91
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 92 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 151
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQACRG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 152 VGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 210
Query: 170 STVE 173
S E
Sbjct: 211 SVAE 214
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 13 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 72
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 73 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 132
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQA RGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 133 KLFFIQAARGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 180
>pdb|4EHH|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 199
>pdb|4EHA|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHA|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 199
>pdb|4EHL|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHL|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 199
>pdb|3ITN|A Chain A, Crystal Structure Of Pseudo-Activated Procaspase-3
Length = 250
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|3H0E|A Chain A, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
pdb|3H0E|B Chain B, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
Length = 255
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|1CP3|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
pdb|1CP3|B Chain B, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
Length = 277
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVDADFLYAYST 199
>pdb|3PCX|A Chain A, Caspase-3 E246a, K242a Double Mutant
Length = 250
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|2J30|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|3PD1|A Chain A, Caspase-3 K242a
Length = 250
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|2J33|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|1QX3|A Chain A, Conformational Restrictions In The Active Site Of
Unliganded Human Caspase-3
Length = 257
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVDADFLYAYST 171
>pdb|1NMQ|A Chain A, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMQ|B Chain B, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMS|A Chain A, Caspase-3 Tethered To Irreversible Inhibitor
pdb|1NMS|B Chain B, Caspase-3 Tethered To Irreversible Inhibitor
Length = 249
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVDADFLYAYST 171
>pdb|2J31|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(pro)caspase-3
Length = 250
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTALDCGI--------ETDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
pdb|3H1P|B Chain B, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
Length = 260
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 97/169 (57%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 10 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 69
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+ +TL KP
Sbjct: 70 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKP 129
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+LD G++ S +TDA YK P ADFL AYSTV
Sbjct: 130 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKAPVEADFLFAYSTV 177
>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor
pdb|1SHL|B Chain B, Caspase-7 In Complex With Fica Allosteric Inhibitor
Length = 245
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 23/169 (13%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 3 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 62
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 63 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 122
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQACRGT+L G++ SR YKIP ADFL AYSTV
Sbjct: 123 KLFFIQACRGTELADGIQADSR-----------YKIPVEADFLFAYSTV 160
>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
Length = 294
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 91/184 (49%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 25 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 84
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 85 KVEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 144
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQA RG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 145 VGKPKIFIIQAARGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 203
Query: 170 STVE 173
S E
Sbjct: 204 SVAE 207
>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7
pdb|1K88|B Chain B, Crystal Structure Of Procaspase-7
Length = 253
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 97/169 (57%), Gaps = 13/169 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 9 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 68
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F +C+TL KP
Sbjct: 69 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKP 128
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTV 172
K+FFIQA RGT+LD G++ S +TDA YKIP ADFL AYSTV
Sbjct: 129 KLFFIQAARGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTV 176
>pdb|2J32|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(Pro)caspase-3
Length = 250
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ TD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGI--------ATDSGVDDDMACHKIPVEADFLYAYST 171
>pdb|4EHD|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYACST 199
>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
Length = 279
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 91/184 (49%), Gaps = 24/184 (13%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 12 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 71
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 72 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 131
Query: 120 AGKPKIFFIQACRGTK----------LDGGVRLVSRANTETDAGVNAYKIPSYADFLIAY 169
GKPKIF IQA RG + +D + TE DA + Y +P+ ADFL+ Y
Sbjct: 132 VGKPKIFIIQAARGNQHDVPVIPLDVVDNQTEKLDTNITEVDAA-SVYTLPAGADFLMCY 190
Query: 170 STVE 173
S E
Sbjct: 191 SVAE 194
>pdb|4EHK|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHK|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYACST 199
>pdb|4EHF|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYACST 199
>pdb|4EHN|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQACRGT+LD G+ ETD+GV+ +KIP ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGI--------ETDSGVDDDMACHKIPVEADFLYACST 199
>pdb|3DEH|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
Length = 249
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGVRLVSRANTETDAGVN----AYKIPSYADFLIAYST 171
+F IQA RGT+LD G+ ETD+GV+ +KIP ADFL AYST
Sbjct: 129 LFIIQAXRGTELDCGI--------ETDSGVDDDMACHKIPVDADFLYAYST 171
>pdb|3P4U|A Chain A, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
pdb|3P4U|C Chain C, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
Length = 157
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 14 SAEYNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNPEF 72
+ +Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + + +
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTXADRDNLTRRFSDLGFEVKXFNDLKA 71
Query: 73 REITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTLAG 121
E+ + +S H+DADC V L+HG G Q L F DKC +L G
Sbjct: 72 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 122 KPKIFFIQACRGTKLD 137
KPKIF IQACRG + D
Sbjct: 132 KPKIFIIQACRGNQHD 147
>pdb|3QNW|A Chain A, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|C Chain C, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|E Chain E, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|G Chain G, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
Length = 156
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 14 SAEYNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNPEF 72
+ +Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + + +
Sbjct: 11 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 70
Query: 73 REITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTLAG 121
E+ + +S H+DADC V L+HG G Q L F DKC +L G
Sbjct: 71 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 130
Query: 122 KPKIFFIQACRGTKLD 137
KPKIF IQACRG + D
Sbjct: 131 KPKIFIIQACRGNQHD 146
>pdb|3P45|A Chain A, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|C Chain C, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|E Chain E, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|G Chain G, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|I Chain I, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|K Chain K, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|M Chain M, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|O Chain O, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
Length = 179
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 73/138 (52%), Gaps = 13/138 (9%)
Query: 13 DSAE-YNMSHPRRGRALVFNHDEFQMDNMTP-RPGSGADVKNLEAAFYALGFEVSVYTNP 70
D AE Y M H RRG AL+FNH+ F P R G+ AD NL F LGFEV + +
Sbjct: 32 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDL 91
Query: 71 EFREITEILSNLSQEDHSDADCLVITVLTHGLGE-----------QKLWLPFTADKCRTL 119
+ E+ + +S H+DADC V L+HG G Q L F DKC +L
Sbjct: 92 KAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSL 151
Query: 120 AGKPKIFFIQACRGTKLD 137
GKPKIF IQACRG + D
Sbjct: 152 VGKPKIFIIQACRGNQHD 169
>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|A Chain A, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|C Chain C, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|A Chain A, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|C Chain C, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|A Chain A, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|C Chain C, Crystal Structure Of Unliganded Caspase-7
Length = 173
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 12/138 (8%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 36 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 95
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F D+C+TL KP
Sbjct: 96 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKP 155
Query: 124 KIFFIQACRGTKLDGGVR 141
K+FFIQACRGT+LD G++
Sbjct: 156 KLFFIQACRGTELDDGIQ 173
>pdb|1PAU|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Aldehyde Inhibitor Ac-Devd-Cho
pdb|1GFW|A Chain A, The 2.8 Angstrom Crystal Structure Of Caspase-3 (Apopain
Or Cpp32)in Complex With An Isatin Sulfonamide
Inhibitor.
pdb|1RE1|A Chain A, Crystal Structure Of Caspase-3 With A Nicotinic Acid
Aldehyde Inhibitor
pdb|1RHJ|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
pdb|1RHJ|C Chain C, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
pdb|1RHK|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Phenyl-Propyl- Ketone Inhibitor
pdb|1RHM|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHM|C Chain C, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHQ|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHQ|D Chain D, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHR|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Cinnamic Acid Methyl Ester Inhibitor
pdb|1RHU|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A 5,6,7
Tricyclic Peptidomimetic Inhibitor
pdb|2CJX|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-ray Structure Analysis
pdb|2CJY|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2C1E|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2K|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2M|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2O|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2CDR|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNK|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNL|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNN|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|3EDQ|A Chain A, Crystal Structure Of Caspase-3 With Inhibitor Ac-Ldesd-Cho
pdb|3EDQ|C Chain C, Crystal Structure Of Caspase-3 With Inhibitor Ac-Ldesd-Cho
pdb|3GJQ|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJQ|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3KJF|A Chain A, Caspase 3 Bound To A Covalent Inhibitor
pdb|2CNO|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-peptide Epoxide Inhibitors
Length = 147
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGV 140
+F IQACRGT+LD G+
Sbjct: 129 LFIIQACRGTELDCGI 144
>pdb|1NME|A Chain A, Structure Of Casp-3 With Tethered Salicylate
pdb|2DKO|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2H5I|A Chain A, Crystal Structure Of Caspase-3 With Inhibitor Ac-Devd-Cho
pdb|2H5J|A Chain A, Crystal Strusture Of Caspase-3 With Inhibitor Ac-Dmqd-Cho
pdb|2H5J|C Chain C, Crystal Strusture Of Caspase-3 With Inhibitor Ac-Dmqd-Cho
pdb|2H65|A Chain A, Crystal Strusture Of Caspase-3 With Inhibitor Ac-vdvad-cho
pdb|2H65|C Chain C, Crystal Strusture Of Caspase-3 With Inhibitor Ac-vdvad-cho
pdb|2XYG|A Chain A, Caspase-3:cas329306
pdb|2XYH|A Chain A, Caspase-3:cas60254719
pdb|2XYP|A Chain A, Caspase-3:cas26049945
Length = 146
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGV 140
+F IQACRGT+LD G+
Sbjct: 129 LFIIQACRGTELDCGI 144
>pdb|1I51|A Chain A, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|C Chain C, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 148
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 12/138 (8%)
Query: 16 EYNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F ++ M R G+ D + L F +LGF+V VY + +
Sbjct: 9 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 68
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHG-----LGE------QKLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG G+ + L F +C+TL KP
Sbjct: 69 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKP 128
Query: 124 KIFFIQACRGTKLDGGVR 141
K+FFIQACRGT+LD G++
Sbjct: 129 KLFFIQACRGTELDDGIQ 146
>pdb|4DCP|A Chain A, Crystal Structure Of Caspase 3, L168f Mutant
pdb|4DCP|D Chain D, Crystal Structure Of Caspase 3, L168f Mutant
Length = 147
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGV 140
+F IQACRGT+ D G+
Sbjct: 129 LFIIQACRGTEFDCGI 144
>pdb|4DCO|A Chain A, Crystal Structure Of Caspase 3, L168y Mutant
pdb|4DCO|D Chain D, Crystal Structure Of Caspase 3, L168y Mutant
Length = 147
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGV 140
+F IQACRGT+ D G+
Sbjct: 129 LFIIQACRGTEYDCGI 144
>pdb|4DCJ|A Chain A, Crystal Structure Of Caspase 3, L168d Mutant
pdb|4DCJ|D Chain D, Crystal Structure Of Caspase 3, L168d Mutant
Length = 147
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 125 IFFIQACRGTKLDGGV 140
+F IQACRGT+ D G+
Sbjct: 129 LFIIQACRGTEDDCGI 144
>pdb|1I3O|A Chain A, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|C Chain C, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 175
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 125 IFFIQACRGTKLDGGV 140
+F IQA RGT+LD G+
Sbjct: 157 LFIIQAARGTELDCGI 172
>pdb|2XZD|A Chain A, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|C Chain C, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZT|A Chain A, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|C Chain C, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2Y0B|A Chain A, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|C Chain C, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 149
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y M +P G ++ N+ F MT R G+ D NL F L +EV + EI
Sbjct: 11 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 70
Query: 76 TEILSNLSQEDHSDADCLVITVLTHG-----------LGEQKLWLPFTADKCRTLAGKPK 124
E++ ++S+EDHS V +L+HG + +K+ F D+CR+L GKPK
Sbjct: 71 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 130
Query: 125 IFFIQACRGTKLDGGV 140
+F IQA RGT+LD G+
Sbjct: 131 LFIIQAXRGTELDCGI 146
>pdb|1I4E|B Chain B, Crystal Structure Of The Caspase-8P35 COMPLEX
pdb|2FUN|B Chain B, Alternative P35-Caspase-8 Complex
pdb|2FUN|D Chain D, Alternative P35-Caspase-8 Complex
Length = 258
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 87/191 (45%), Gaps = 37/191 (19%)
Query: 17 YNMSHPRRGRALVFNHDEF--------QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT 68
Y M RG L+ N+ F ++ ++ R G+ D L F L FE+ +
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 69 NPEFREITEILSNLSQEDHSDADCLVITVLTHGL--------GEQ----KLWLPFTADKC 116
+ +I EIL DHS+ DC + +L+HG G++ +L FT KC
Sbjct: 65 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 124
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAY-----------KIPSYADF 165
+LAGKPK+FFIQAC+G G+ + ETD+ Y IP ADF
Sbjct: 125 PSLAGKPKVFFIQACQGDNYQKGIPV------ETDSEEQPYLEMDLSSPQTRYIPDEADF 178
Query: 166 LIAYSTVEDSL 176
L+ +TV + +
Sbjct: 179 LLGMATVNNCV 189
>pdb|3H11|B Chain B, Zymogen Caspase-8:c-Flipl Protease Domain Complex
Length = 271
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 17 YNMSHPRRGRALVFNHDEF--------QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT 68
Y M RG L+ N+ F ++ ++ R G+ D L F L FE+ +
Sbjct: 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 69
Query: 69 NPEFREITEILSNLSQEDHSDADCLVITVLTHGL--------GEQ----KLWLPFTADKC 116
+ +I EIL DHS+ DC + +L+HG G++ +L FT KC
Sbjct: 70 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 129
Query: 117 RTLAGKPKIFFIQACRGTKLDGG--VRLVSRANTETDAGVNAYK---IPSYADFLIAYST 171
+LAGKPK+FFIQAC+G G V S + +++ + IP ADFL+ +T
Sbjct: 130 PSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDEADFLLGMAT 189
Query: 172 VEDSL 176
V + +
Sbjct: 190 VNNCV 194
>pdb|2K7Z|A Chain A, Solution Structure Of The Catalytic Domain Of Procaspase-8
Length = 266
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 37/191 (19%)
Query: 17 YNMSHPRRGRALVFNHDEF--------QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT 68
Y M RG L+ N+ F ++ ++ R G+ D L F L FE+ +
Sbjct: 13 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 72
Query: 69 NPEFREITEILSNLSQEDHSDADCLVITVLTHG--------LGEQ----KLWLPFTADKC 116
+ +I EIL DHS+ DC + +L+HG G++ +L FT KC
Sbjct: 73 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 132
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAY-----------KIPSYADF 165
+LAGKPK+FFIQA +G G+ + ETD+ Y IP ADF
Sbjct: 133 PSLAGKPKVFFIQAAQGDNYQKGIPV------ETDSEEQPYLEMDLSSPQTRYIPDEADF 186
Query: 166 LIAYSTVEDSL 176
L+ +TV + +
Sbjct: 187 LLGMATVNNCV 197
>pdb|1QDU|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|C Chain C, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|E Chain E, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|G Chain G, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|I Chain I, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|K Chain K, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1F9E|A Chain A, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|C Chain C, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|E Chain E, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|G Chain G, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|I Chain I, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|K Chain K, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
Length = 153
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 17 YNMSHPRRGRALVFNHDEF--------QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT 68
Y M RG L+ N+ F ++ ++ R G+ D L F L FE+ +
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 69 NPEFREITEILSNLSQEDHSDADCLVITVLTHGL--------GEQ----KLWLPFTADKC 116
+ +I EIL DHS+ DC + +L+HG G++ +L FT KC
Sbjct: 65 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 124
Query: 117 RTLAGKPKIFFIQACRGTKLDGGV 140
+LAGKPK+FFIQAC+G G+
Sbjct: 125 PSLAGKPKVFFIQACQGDNYQKGI 148
>pdb|2C2Z|A Chain A, Crystal Structure Of Caspase-8 In Complex With Aza-Peptide
Michael Acceptor Inhibitor
pdb|2Y1L|A Chain A, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|C Chain C, Caspase-8 In Complex With Darpin-8.4
Length = 159
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 17 YNMSHPRRGRALVFNHDEF--------QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT 68
Y M RG L+ N+ F ++ ++ R G+ D L F L FE+ +
Sbjct: 11 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 70
Query: 69 NPEFREITEILSNLSQEDHSDADCLVITVLTHGL--------GEQ----KLWLPFTADKC 116
+ +I EIL DHS+ DC + +L+HG G++ +L FT KC
Sbjct: 71 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 130
Query: 117 RTLAGKPKIFFIQACRGTKLDGGV 140
+LAGKPK+FFIQAC+G G+
Sbjct: 131 PSLAGKPKVFFIQACQGDNYQKGI 154
>pdb|1QTN|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The
Tetrapeptide Inhibitor Ace-Ietd-Aldehyde
pdb|3KJN|A Chain A, Caspase 8 Bound To A Covalent Inhibitor
pdb|3KJQ|A Chain A, Caspase 8 With Covalent Inhibitor
Length = 164
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 17 YNMSHPRRGRALVFNHDEF--------QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT 68
Y M RG L+ N+ F ++ ++ R G+ D L F L FE+ +
Sbjct: 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 75
Query: 69 NPEFREITEILSNLSQEDHSDADCLVITVLTHGL--------GEQ----KLWLPFTADKC 116
+ +I EIL DHS+ DC + +L+HG G++ +L FT KC
Sbjct: 76 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 135
Query: 117 RTLAGKPKIFFIQACRGTKLDGGV 140
+LAGKPK+FFIQAC+G G+
Sbjct: 136 PSLAGKPKVFFIQACQGDNYQKGI 159
>pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|B Chain B, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|C Chain C, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|D Chain D, Structure Of Cleaved, Card Domain Deleted Caspase-9
Length = 284
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 17 YNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y +S G L+ N+ F + + R GS D + L F +L F V V + +++
Sbjct: 15 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKM 74
Query: 76 TEILSNLSQEDHSDADCLVITVLTHGLGEQKLWLP-------------------FTADKC 116
L L+++DH DC V+ +L+HG L P F C
Sbjct: 75 VLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSC 134
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSR--------ANTETDA-----GVNAY------ 157
+L GKPK+FFIQAC G + D G + S +N E DA G+ +
Sbjct: 135 PSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAI 194
Query: 158 -KIPSYADFLIAYST 171
+P+ +D ++YST
Sbjct: 195 SSLPTPSDIFVSYST 209
>pdb|1NW9|B Chain B, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 277
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 17 YNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y +S G L+ N+ F + + R GS D + L F +L F V V + +++
Sbjct: 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKM 73
Query: 76 TEILSNLSQEDHSDADCLVITVLTHGLGEQKLWLP-------------------FTADKC 116
L L+++DH DC V+ +L+HG L P F C
Sbjct: 74 VLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSC 133
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSR--------ANTETDA-----GVNAY------ 157
+L GKPK+FFIQAC G + D G + S +N E DA G+ +
Sbjct: 134 PSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAI 193
Query: 158 -KIPSYADFLIAYST 171
+P+ +D ++YST
Sbjct: 194 SSLPTPSDIFVSYST 208
>pdb|2AR9|A Chain A, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|B Chain B, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|C Chain C, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|D Chain D, Crystal Structure Of A Dimeric Caspase-9
Length = 278
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 17 YNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y +S G L+ N+ F + + R GS D + L F +L F V V + +++
Sbjct: 15 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKM 74
Query: 76 TEILSNLSQEDHSDADCLVITVLTHGLGEQKLWLP-------------------FTADKC 116
L L+++DH DC V+ +L+HG L P F C
Sbjct: 75 VLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSC 134
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSR--------ANTETDA-----GVNAY------ 157
+L GKPK+FFIQA G + D G + S +N E DA G+ +
Sbjct: 135 PSLGGKPKLFFIQASGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAI 194
Query: 158 -KIPSYADFLIAYST 171
+P+ +D ++YST
Sbjct: 195 SSLPTPSDIFVSYST 209
>pdb|3RJM|A Chain A, Caspase2 In Complex With Chdi Ligand 33c
pdb|3RJM|C Chain C, Caspase2 In Complex With Chdi Ligand 33c
Length = 169
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y + RG ALV ++ F + + R G D L F LG++V V + +E+
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 76 TEILSNLSQ-EDHSDADCLVITVLTHG------------LGEQKLWLPFTADKCRTLAGK 122
E L N +Q H D ++ +L+HG L Q+++ F C +L K
Sbjct: 88 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 147
Query: 123 PKIFFIQACRGTKLDGGV 140
PK+FFIQACRG + D GV
Sbjct: 148 PKMFFIQACRGDETDRGV 165
>pdb|2P2C|A Chain A, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|C Chain C, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|E Chain E, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|G Chain G, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|I Chain I, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|K Chain K, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y + RG ALV ++ F + + R G D L F LG++V V + +E+
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 76 TEILSNLSQ-EDHSDADCLVITVLTHG------------LGEQKLWLPFTADKCRTLAGK 122
E L N +Q H D ++ +L+HG L Q+++ F C +L K
Sbjct: 88 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 147
Query: 123 PKIFFIQACRGTKLDGGV 140
PK+FFIQACRG + D GV
Sbjct: 148 PKMFFIQACRGDETDRGV 165
>pdb|3R5J|A Chain A, Crystal Structure Of Active Caspase-2 Bound With
Ac-Advad-Cho
pdb|3R5J|C Chain C, Crystal Structure Of Active Caspase-2 Bound With
Ac-Advad-Cho
pdb|3R6G|A Chain A, Crystal Structure Of Active Caspase-2 Bound With
Ac-Vdvad-Cho
pdb|3R6G|C Chain C, Crystal Structure Of Active Caspase-2 Bound With
Ac-Vdvad-Cho
pdb|3R6L|A Chain A, Caspase-2 T380a Bound With Ac-Vdvad-Cho
pdb|3R6L|C Chain C, Caspase-2 T380a Bound With Ac-Vdvad-Cho
pdb|3R7B|A Chain A, Caspase-2 Bound To One Copy Of Ac-Dvad-Cho
pdb|3R7B|C Chain C, Caspase-2 Bound To One Copy Of Ac-Dvad-Cho
pdb|3R7N|A Chain A, Caspase-2 Bound With Two Copies Of Ac-Dvad-Cho
pdb|3R7N|C Chain C, Caspase-2 Bound With Two Copies Of Ac-Dvad-Cho
pdb|3R7S|A Chain A, Crystal Structure Of Apo Caspase2
pdb|3R7S|C Chain C, Crystal Structure Of Apo Caspase2
Length = 160
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y + RG ALV ++ F + + R G D L F LG++V V + +E+
Sbjct: 19 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 78
Query: 76 TEILSNLSQ-EDHSDADCLVITVLTHG------------LGEQKLWLPFTADKCRTLAGK 122
E L N +Q H D ++ +L+HG L Q+++ F C +L K
Sbjct: 79 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 138
Query: 123 PKIFFIQACRGTKLDGGV 140
PK+FFIQACRG + D GV
Sbjct: 139 PKMFFIQACRGDETDRGV 156
>pdb|1PYO|A Chain A, Crystal Structure Of Human Caspase-2 In Complex With
Acetyl-Leu-Asp- Glu-Ser-Asp-Cho
pdb|1PYO|C Chain C, Crystal Structure Of Human Caspase-2 In Complex With
Acetyl-Leu-Asp- Glu-Ser-Asp-Cho
Length = 167
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDN-MTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y + RG ALV ++ F + + R G D L F LG++V V + +E+
Sbjct: 26 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 85
Query: 76 TEILSNLSQ-EDHSDADCLVITVLTHG------------LGEQKLWLPFTADKCRTLAGK 122
E L N +Q H D ++ +L+HG L Q+++ F C +L K
Sbjct: 86 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 145
Query: 123 PKIFFIQACRGTKLDGGV 140
PK+FFIQACRG + D GV
Sbjct: 146 PKMFFIQACRGDETDRGV 163
>pdb|3H11|A Chain A, Zymogen Caspase-8:c-Flipl Protease Domain Complex
pdb|3H13|A Chain A, C-Flipl Protease-Like Domain
Length = 272
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 47 GADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLS-QEDHSDADCLVITVLTHGLGEQ 105
G + + L F +LG+EV + + I++IL + +H D D V +++ G G Q
Sbjct: 53 GNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRG-GSQ 111
Query: 106 KLW--------LP-------FTADKCRTLAGKPKIFFIQ 129
++ LP F D C LAGKPK+FFIQ
Sbjct: 112 SVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQ 150
>pdb|3D6H|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Asn263->ser Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 38 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 95
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 96 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFSMLNTKNCPSL 155
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQACRG
Sbjct: 156 KDKPKVIIIQACRG 169
>pdb|3D6F|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Arg240->gln Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 38 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 95
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 96 ELEAFAHRPEHKTSDSTFLVFMSHGIQEGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 155
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQACRG
Sbjct: 156 KDKPKVIIIQACRG 169
>pdb|3D6M|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Lys319->arg Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 38 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 95
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 96 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 155
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQACRG
Sbjct: 156 KDKPKVIIIQACRG 169
>pdb|1ICE|A Chain A, Structure And Mechanism Of Interleukin-1beta Converting
Enzyme
pdb|1BMQ|A Chain A, Crystal Structure Of The Complex Of Interleukin-1beta
Converting Enzyme (Ice) With A Peptide Based Inhibitor,
(3s
)-N-Methanesulfonyl-3-({1-[n-(2-Naphtoyl)-L-Valyl]-L-
Prolyl }amino)-4-Oxobutanamide
Length = 167
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 26 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 83
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 84 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 143
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQACRG
Sbjct: 144 KDKPKVIIIQACRG 157
>pdb|1RWK|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid
pdb|1RWM|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[2-(5-
{[4-(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-
Thiophen-2-Yl)- Acetylamino]-Pentanoic Acid
pdb|1RWN|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{2-Ethyl-6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Hexanoylamino}-4-
Oxo-Butyric Acid
pdb|1RWO|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Pentanoic Acid
pdb|1RWP|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{6-[(8-Hydroxy-
Quinoline-2-Carbonyl)-Amino]-2-Thiophen-2-Yl-
Hexanoylamino}-4-Oxo- Butyric Acid
pdb|1RWV|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
5-[5-(1-
Carboxymethyl-2-oxo-propylcarbamoyl)-5-phenyl-
pentylsulfamoyl]-2- Hydroxy-benzoic Acid
pdb|1RWW|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[(6-{[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-Pyridine-3-
Carbonyl)- Amino]-Butyric Acid
pdb|1RWX|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Yloxy)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Butyric Acid
pdb|2H48|A Chain A, Crystal Structure Of Human Caspase-1 (Cys362->ala,
Cys364->ala, Cys397->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-
Butyrylamino)-Propionylamino]-4-Oxo-Pentanoic Acid
(Z-Vad-Fmk)
pdb|2HBQ|A Chain A, Crystal Structure Of Wildtype Human Caspase-1 In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBY|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H4W|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H54|A Chain A, Crystal Structure Of Human Caspase-1 (Thr388->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 37 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 94
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 95 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQACRG
Sbjct: 155 KDKPKVIIIQACRG 168
>pdb|3NS7|A Chain A, Succinic Acid Amides As P2-P3 Replacements For Inhibitors
Of Interleukin-1beta Converting Enzyme (Ice Or Caspase
1)
Length = 162
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 21 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 78
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 79 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 138
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQACRG
Sbjct: 139 KDKPKVIIIQACRG 152
>pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 194
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 53 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 110
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 111 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 170
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQACRG
Sbjct: 171 KDKPKVIIIQACRG 184
>pdb|2H4Y|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->lys) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H51|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp And
Arg286->lys) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 37 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 94
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 95 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQAC+G
Sbjct: 155 KDKPKVIIIQACKG 168
>pdb|2HBR|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBZ|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala,
Glu390->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 37 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 94
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 95 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQAC G
Sbjct: 155 KDKPKVIIIQACAG 168
>pdb|1SC1|A Chain A, Crystal Structure Of An Active-Site Ligand-Free Form Of
The Human Caspase-1 C285a Mutant
pdb|1SC3|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant In
Complex With Malonate
pdb|1SC4|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant
After Removal Of Malonate
pdb|2FQQ|A Chain A, Crystal Structure Of Human Caspase-1 (Cys285->ala,
Cys362->ala, Cys364->ala, Cys397->ala) In Complex With
1-Methyl-3-Trifluoromethyl-
1h-Thieno[2,3-C]pyrazole-5-Carboxylic Acid
(2-Mercapto-Ethyl)-Amide
Length = 178
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 37 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 94
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 95 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQA RG
Sbjct: 155 KDKPKVIIIQAARG 168
>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre
pdb|3E4C|B Chain B, Procaspase-1 Zymogen Domain Crystal Strucutre
Length = 302
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 19 MSHPRRGR-ALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITE 77
M R R AL+ ++EF D++ R G+ D+ + LG+ V V N ++T
Sbjct: 54 MDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTT 111
Query: 78 ILSNLSQE-DHSDADCLVITVLTHGLGE-----------------QKLWLPFTADKCRTL 119
L + +H +D + ++HG+ E ++ C +L
Sbjct: 112 ELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 171
Query: 120 AGKPKIFFIQACRG 133
KPK+ IQA RG
Sbjct: 172 KDKPKVIIIQAARG 185
>pdb|2FP3|A Chain A, Crystal Structure Of The Drosophila Initiator Caspase
Dronc
Length = 316
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 24 RGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLS 83
RG L+ N ++ D R G+ D K+L F L F + Y N + ++L+ ++
Sbjct: 61 RGVLLMVNIMDYP-DQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVT 119
Query: 84 QEDH-SDADCLVITVLTHG----------------LGEQKLWLPFTADKCRTLAGKPKIF 126
+ + +C V+ ++THG + QK+ F KC L KPK+
Sbjct: 120 SSSYVQNTECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVL 179
Query: 127 FIQACRGTKLDGG 139
RG + D G
Sbjct: 180 MFPFARGDEYDLG 192
>pdb|3SIP|B Chain B, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|D Chain D, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 109
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 16/17 (94%)
Query: 156 AYKIPSYADFLIAYSTV 172
+YKIP +ADFLIAYSTV
Sbjct: 6 SYKIPVHADFLIAYSTV 22
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 16/17 (94%)
Query: 204 AYKIPSYADFLIAYSTV 220
+YKIP +ADFLIAYSTV
Sbjct: 6 SYKIPVHADFLIAYSTV 22
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate
Substrate
Length = 422
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 45 GSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQE 85
G G + LE+ A G++V VY++P TE + QE
Sbjct: 59 GKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQE 99
>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
YERSINIA PESTIS C092
pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
MN ION FROM Yersinia Pestis C092
pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
L-Glutamate Bound
Length = 437
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 36 QMDNMTPRP---------GSGADVKNLEAAFYALGFEVSVYTNPEFREITEIL----SNL 82
++D + P P G G LEA A G V VY++P TE + L
Sbjct: 44 RLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQEL 103
Query: 83 SQEDHS 88
S+ +HS
Sbjct: 104 SEAEHS 109
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 45 GSGA-DVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADC-LVITVLTHGL 102
GSG D K L+ A ALGFE P+ EI +++S + ++ D +T++T +
Sbjct: 41 GSGTIDAKELKVAMRALGFE------PKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKM 94
Query: 103 GEQ 105
GE+
Sbjct: 95 GER 97
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 45 GSGA-DVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDAD-CLVITVLTHGL 102
G+G DVK L+ A ALGFE P+ EI +++S + +E + +TV+T +
Sbjct: 19 GTGTIDVKELKVAMRALGFE------PKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKM 72
Query: 103 GEQ 105
E+
Sbjct: 73 SEK 75
>pdb|1I51|B Chain B, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|D Chain D, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 105
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 149 ETDAGVNAYKIPSYADFLIAYSTV 172
+TDA YKIP ADFL AYSTV
Sbjct: 6 DTDANPR-YKIPVEADFLFAYSTV 28
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 197 ETDAGVNAYKIPSYADFLIAYSTV 220
+TDA YKIP ADFL AYSTV
Sbjct: 6 DTDANPR-YKIPVEADFLFAYSTV 28
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 45 GSGA-DVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCL-VITVLTHGL 102
G+G DVK L+ A ALGFE P+ EI +++S + +E + +TV+T +
Sbjct: 44 GTGTIDVKELKVAMRALGFE------PKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKM 97
>pdb|2QL5|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|B Chain B, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|D Chain D, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|B Chain B, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|D Chain D, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|B Chain B, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|D Chain D, Crystal Structure Of Unliganded Caspase-7
Length = 97
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 157 YKIPSYADFLIAYSTV 172
YKIP ADFL AYSTV
Sbjct: 5 YKIPVEADFLFAYSTV 20
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 205 YKIPSYADFLIAYSTV 220
YKIP ADFL AYSTV
Sbjct: 5 YKIPVEADFLFAYSTV 20
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,242,537
Number of Sequences: 62578
Number of extensions: 288235
Number of successful extensions: 854
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 148
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)