Query psy13938
Match_columns 245
No_of_seqs 216 out of 1233
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:18:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3od5_A Caspase-6; caspase doma 100.0 4.4E-54 1.5E-58 381.0 10.4 226 7-235 4-269 (278)
2 3sir_A Caspase; hydrolase; 2.6 100.0 1.4E-53 4.9E-58 374.3 8.0 225 7-235 3-259 (259)
3 3h11_B Caspase-8; cell death, 100.0 1.4E-52 4.6E-57 370.3 11.2 220 13-235 6-264 (271)
4 4ehd_A Caspase-3; caspase, apo 100.0 5.8E-52 2E-56 367.0 10.5 212 14-233 34-277 (277)
5 1m72_A Caspase-1; caspase, cys 100.0 1E-51 3.6E-56 364.8 11.0 224 6-235 14-269 (272)
6 2nn3_C Caspase-1; cysteine pro 100.0 4.5E-51 1.5E-55 366.0 9.9 226 6-237 42-299 (310)
7 1nw9_B Caspase 9, apoptosis-re 100.0 1.2E-50 4E-55 359.0 11.5 217 14-234 11-277 (277)
8 3e4c_A Caspase-1; zymogen, inf 100.0 1.5E-50 5.1E-55 361.9 12.0 217 13-235 47-302 (302)
9 2fp3_A Caspase NC; apoptosis, 100.0 6.9E-51 2.4E-55 366.2 9.8 174 13-189 49-255 (316)
10 2j32_A Caspase-3; Pro-caspase3 100.0 1.7E-50 5.8E-55 353.2 8.9 169 15-189 7-187 (250)
11 1f1j_A Caspase-7 protease; cas 100.0 1.1E-49 3.6E-54 356.7 8.6 174 13-189 58-243 (305)
12 3h11_A CAsp8 and FADD-like apo 100.0 4.6E-49 1.6E-53 347.5 5.4 214 5-233 24-271 (272)
13 3p45_A Caspase-6; protease, hu 100.0 2.9E-47 1E-51 315.7 14.7 139 6-144 26-176 (179)
14 2dko_A Caspase-3; low barrier 100.0 2.7E-46 9.1E-51 301.7 14.6 128 14-141 6-145 (146)
15 1qtn_A Caspase-8; apoptosis, d 100.0 8.9E-46 3E-50 304.0 14.2 134 9-142 8-161 (164)
16 2ql9_A Caspase-7; cysteine pro 100.0 1.9E-45 6.6E-50 303.7 14.0 129 12-140 32-172 (173)
17 1pyo_A Caspase-2; apoptosis, c 100.0 4.4E-45 1.5E-49 300.6 15.6 130 14-143 23-166 (167)
18 2h54_A Caspase-1; allosteric s 100.0 4.6E-40 1.6E-44 273.4 14.8 132 8-142 25-176 (178)
19 3uoa_B Mucosa-associated lymph 99.9 3.1E-26 1E-30 210.2 16.4 147 22-189 3-174 (390)
20 3bij_A Uncharacterized protein 99.1 5.6E-10 1.9E-14 98.4 13.8 108 23-135 2-139 (285)
21 1sc3_B Interleukin-1 beta conv 99.1 6.6E-12 2.3E-16 92.2 -0.8 77 156-235 2-88 (88)
22 3rjm_B Caspase-2; caspase-2, c 98.9 1.8E-11 6.2E-16 94.5 -3.6 82 153-237 6-105 (117)
23 3h11_B Caspase-8; cell death, 98.8 7.5E-10 2.6E-14 97.1 2.1 71 163-245 126-203 (271)
24 1pyo_B Caspase-2; apoptosis, c 98.8 1.1E-10 3.8E-15 88.4 -4.0 78 155-236 7-103 (105)
25 3sir_A Caspase; hydrolase; 2.6 98.8 2.5E-09 8.4E-14 93.2 2.8 70 163-245 120-192 (259)
26 1qtn_B Caspase-8; apoptosis, d 98.7 4E-10 1.4E-14 83.8 -2.3 76 156-234 6-95 (95)
27 1m72_A Caspase-1; caspase, cys 98.7 2.2E-09 7.7E-14 94.1 1.4 68 163-245 132-202 (272)
28 4f6o_A Metacaspase-1; rossmann 98.7 2.2E-07 7.6E-12 84.0 14.4 79 22-103 51-141 (350)
29 3od5_A Caspase-6; caspase doma 98.7 1.3E-09 4.4E-14 96.0 -0.5 71 163-245 122-203 (278)
30 1nw9_B Caspase 9, apoptosis-re 98.7 2.7E-09 9.3E-14 93.8 1.1 72 162-245 129-222 (277)
31 2xzd_B Caspase-3; hydrolase-pr 98.7 3E-10 1E-14 87.7 -4.4 80 155-237 8-106 (118)
32 4af8_A Metacaspase MCA2; hydro 98.7 3.6E-07 1.2E-11 83.1 14.8 80 21-103 89-181 (367)
33 2fp3_A Caspase NC; apoptosis, 98.7 1.7E-09 5.7E-14 96.9 -0.7 72 162-245 165-253 (316)
34 4ehd_A Caspase-3; caspase, apo 98.7 2.3E-09 7.7E-14 94.4 0.0 67 163-245 145-213 (277)
35 3h11_A CAsp8 and FADD-like apo 98.6 3.3E-09 1.1E-13 93.1 -0.3 71 163-245 134-213 (272)
36 2ql9_B Caspase-7; cysteine pro 98.6 7.7E-10 2.6E-14 82.5 -4.1 75 156-233 4-97 (97)
37 2j32_A Caspase-3; Pro-caspase3 98.6 3.2E-09 1.1E-13 92.1 -1.2 67 163-245 117-185 (250)
38 2nn3_C Caspase-1; cysteine pro 98.6 8.7E-09 3E-13 92.0 1.2 67 164-245 161-230 (310)
39 2dko_B Caspase-3; low barrier 98.6 1.4E-09 4.9E-14 82.0 -3.5 76 155-233 9-103 (103)
40 1sc3_B Interleukin-1 beta conv 98.6 1.4E-08 4.7E-13 74.4 1.8 29 205-245 3-31 (88)
41 1f1j_A Caspase-7 protease; cas 98.6 7.5E-09 2.6E-13 92.2 0.3 69 164-245 171-241 (305)
42 3e4c_A Caspase-1; zymogen, inf 98.5 2.4E-08 8.3E-13 88.8 2.3 71 163-245 165-245 (302)
43 1qtn_B Caspase-8; apoptosis, d 98.5 3.5E-08 1.2E-12 73.2 1.8 30 204-245 6-35 (95)
44 1pyo_B Caspase-2; apoptosis, c 98.5 3.3E-08 1.1E-12 74.7 1.6 31 203-245 7-37 (105)
45 2ql9_B Caspase-7; cysteine pro 98.5 3.4E-08 1.1E-12 73.5 1.6 30 204-245 4-33 (97)
46 2dko_B Caspase-3; low barrier 98.5 4.9E-08 1.7E-12 73.5 2.4 31 203-245 9-39 (103)
47 3uoa_B Mucosa-associated lymph 96.2 0.0026 9E-08 58.1 3.5 46 175-245 123-172 (390)
48 3rjm_B Caspase-2; caspase-2, c 94.9 0.012 3.9E-07 44.9 2.3 18 203-220 8-25 (117)
49 2xzd_B Caspase-3; hydrolase-pr 94.6 0.013 4.5E-07 44.6 1.9 18 203-220 8-25 (118)
50 1qtn_A Caspase-8; apoptosis, d 79.8 0.14 4.9E-06 41.0 -2.4 30 161-190 130-161 (164)
51 2dko_A Caspase-3; low barrier 77.7 0.29 9.9E-06 38.4 -1.2 28 161-188 115-144 (146)
52 1pyo_A Caspase-2; apoptosis, c 76.5 0.28 9.6E-06 39.4 -1.6 29 162-190 135-165 (167)
53 3p45_A Caspase-6; protease, hu 72.1 0.26 8.9E-06 40.1 -2.8 29 162-190 144-174 (179)
54 2ql9_A Caspase-7; cysteine pro 70.6 0.46 1.6E-05 38.4 -1.7 27 162-188 144-172 (173)
55 3s40_A Diacylglycerol kinase; 68.2 18 0.00063 30.9 8.0 78 46-136 24-103 (304)
56 1zpw_X Hypothetical protein TT 62.0 30 0.001 24.3 6.8 54 47-100 15-71 (90)
57 4eys_A MCCC family protein; MC 56.5 23 0.0008 31.2 6.6 74 48-127 25-109 (346)
58 4a26_A Putative C-1-tetrahydro 52.7 42 0.0014 29.1 7.4 55 22-85 36-93 (300)
59 4e5s_A MCCFLIKE protein (BA_56 51.7 28 0.00096 30.5 6.3 75 47-127 29-111 (331)
60 2i0x_A Hypothetical protein PF 51.4 56 0.0019 22.6 6.7 52 48-99 12-66 (85)
61 2rb4_A ATP-dependent RNA helic 51.0 39 0.0013 25.8 6.5 49 23-84 33-82 (175)
62 2qv7_A Diacylglycerol kinase D 50.9 74 0.0025 27.4 8.9 47 46-95 40-86 (337)
63 2hjv_A ATP-dependent RNA helic 50.3 32 0.0011 26.0 5.8 37 47-83 45-82 (163)
64 4a5o_A Bifunctional protein fo 49.3 52 0.0018 28.3 7.5 55 22-85 34-91 (286)
65 3mos_A Transketolase, TK; thia 48.3 56 0.0019 31.1 8.2 55 25-82 175-229 (616)
66 3f6r_A Flavodoxin; FMN binding 48.1 35 0.0012 25.2 5.7 69 46-127 15-91 (148)
67 1fuk_A Eukaryotic initiation f 48.0 45 0.0015 25.2 6.3 48 24-84 30-78 (165)
68 4es1_A BH0342 protein; ferredo 46.9 66 0.0023 23.1 6.6 52 48-99 22-76 (100)
69 4h1h_A LMO1638 protein; MCCF-l 46.3 52 0.0018 28.6 7.1 75 47-127 29-111 (327)
70 3tla_A MCCF; serine protease, 46.2 38 0.0013 30.2 6.3 74 48-127 61-142 (371)
71 3l07_A Bifunctional protein fo 45.1 51 0.0018 28.4 6.7 55 22-85 33-90 (285)
72 3grc_A Sensor protein, kinase; 44.1 81 0.0028 22.2 8.0 31 47-79 16-46 (140)
73 1t5i_A C_terminal domain of A 43.6 46 0.0016 25.5 5.8 37 47-83 41-78 (172)
74 3exc_X Uncharacterized protein 43.0 84 0.0029 22.0 7.1 52 48-99 16-71 (91)
75 3oq2_A Crispr-associated prote 42.8 70 0.0024 23.0 6.3 52 48-99 25-79 (103)
76 3sr3_A Microcin immunity prote 41.5 39 0.0013 29.6 5.6 74 48-127 31-112 (336)
77 2we8_A Xanthine dehydrogenase; 39.7 28 0.00094 31.3 4.3 26 44-69 210-235 (386)
78 4b4u_A Bifunctional protein fo 38.2 97 0.0033 26.9 7.4 63 22-95 52-117 (303)
79 3on5_A BH1974 protein; structu 37.8 27 0.00093 31.1 3.9 27 44-70 205-231 (362)
80 3eaq_A Heat resistant RNA depe 36.4 55 0.0019 26.0 5.4 50 23-85 30-80 (212)
81 2ivy_A Hypothetical protein SS 34.4 1.2E+02 0.0042 21.5 7.3 54 46-99 13-76 (101)
82 2p6n_A ATP-dependent RNA helic 33.8 82 0.0028 24.6 5.9 19 51-69 44-62 (191)
83 1a4i_A Methylenetetrahydrofola 33.8 1.1E+02 0.0036 26.6 7.0 64 22-96 34-100 (301)
84 2i4i_A ATP-dependent RNA helic 33.7 1.1E+02 0.0039 26.1 7.4 35 48-82 287-322 (417)
85 1ykg_A SIR-FP, sulfite reducta 33.7 32 0.0011 26.4 3.4 72 46-127 23-99 (167)
86 5nul_A Flavodoxin; electron tr 33.2 57 0.002 23.7 4.6 68 46-127 12-85 (138)
87 3p2o_A Bifunctional protein fo 33.1 93 0.0032 26.7 6.5 55 22-85 32-89 (285)
88 2fi0_A Conserved domain protei 32.9 27 0.00091 24.0 2.5 18 48-65 61-78 (81)
89 2d7d_A Uvrabc system protein B 32.9 1.2E+02 0.0042 28.8 8.0 39 46-84 454-493 (661)
90 2c2x_A Methylenetetrahydrofola 31.0 1.1E+02 0.0037 26.3 6.5 55 22-85 31-88 (281)
91 2l69_A Rossmann 2X3 fold prote 30.6 1.5E+02 0.0051 21.3 6.8 51 47-103 12-62 (134)
92 1zl0_A Hypothetical protein PA 30.1 48 0.0016 28.8 4.2 76 47-127 31-114 (311)
93 1cvr_A Gingipain R, RGPB; casp 29.9 1.7E+02 0.0059 26.4 8.1 79 49-137 166-250 (435)
94 2jgn_A DBX, DDX3, ATP-dependen 29.2 69 0.0024 24.9 4.7 20 50-69 33-54 (185)
95 1hv8_A Putative ATP-dependent 29.1 1.1E+02 0.0037 25.5 6.3 18 51-68 228-245 (367)
96 3h1t_A Type I site-specific re 29.0 1.5E+02 0.005 27.3 7.6 67 23-103 438-514 (590)
97 1c4o_A DNA nucleotide excision 29.0 1.4E+02 0.0049 28.3 7.7 54 46-103 448-504 (664)
98 2hiy_A Hypothetical protein; C 28.9 1.2E+02 0.0042 24.0 6.1 40 48-87 22-71 (183)
99 3ncv_A DNA mismatch repair pro 28.2 1E+02 0.0035 25.2 5.7 15 52-66 99-113 (220)
100 3lte_A Response regulator; str 27.7 97 0.0033 21.4 5.0 73 47-130 16-88 (132)
101 2jvr_A Nucleolar protein 3; RN 27.1 79 0.0027 22.7 4.4 36 17-64 21-56 (111)
102 3g23_A Peptidase U61, LD-carbo 26.1 1.7E+02 0.0057 24.7 6.9 76 47-127 17-102 (274)
103 3pey_A ATP-dependent RNA helic 25.9 1.2E+02 0.0041 25.5 6.1 38 47-84 253-291 (395)
104 1bvy_F Protein (cytochrome P45 25.8 1E+02 0.0036 24.3 5.2 73 44-127 32-109 (191)
105 3ngx_A Bifunctional protein fo 25.0 1.7E+02 0.0057 25.0 6.6 55 21-85 25-82 (276)
106 3fht_A ATP-dependent RNA helic 24.8 1.3E+02 0.0043 25.7 6.0 37 47-83 276-313 (412)
107 2j0s_A ATP-dependent RNA helic 24.5 1.5E+02 0.0052 25.3 6.5 19 51-69 265-284 (410)
108 1ccw_A Protein (glutamate muta 24.1 99 0.0034 23.0 4.6 57 50-112 20-79 (137)
109 3p9z_A Uroporphyrinogen III co 23.8 65 0.0022 26.1 3.7 35 51-85 193-227 (229)
110 3i32_A Heat resistant RNA depe 23.7 1.2E+02 0.0041 25.8 5.5 49 24-85 28-77 (300)
111 1f4p_A Flavodoxin; electron tr 23.7 1E+02 0.0035 22.4 4.6 69 46-127 14-90 (147)
112 1b0a_A Protein (fold bifunctio 23.0 1.2E+02 0.0043 26.0 5.4 55 22-85 32-89 (288)
113 1s2m_A Putative ATP-dependent 22.6 1.5E+02 0.0051 25.2 6.1 20 50-69 246-266 (400)
114 2lv7_A Calcium-binding protein 22.4 55 0.0019 22.9 2.6 38 44-83 29-66 (100)
115 1xti_A Probable ATP-dependent 22.3 1.9E+02 0.0065 24.3 6.7 20 50-69 238-258 (391)
116 1mkz_A Molybdenum cofactor bio 21.7 2.8E+02 0.0095 21.3 7.9 41 45-85 23-67 (172)
117 2fz5_A Flavodoxin; alpha/beta 21.6 47 0.0016 23.9 2.2 69 46-128 13-87 (137)
118 1r9j_A Transketolase; domains, 21.4 84 0.0029 30.2 4.4 55 26-84 180-236 (673)
119 2bon_A Lipid kinase; DAG kinas 21.1 3.1E+02 0.01 23.3 7.7 78 48-135 44-123 (332)
120 3hly_A Flavodoxin-like domain; 21.0 2.1E+02 0.0073 21.4 6.0 74 45-127 13-88 (161)
121 1edz_A 5,10-methylenetetrahydr 20.8 2.5E+02 0.0086 24.3 7.0 64 22-96 35-98 (320)
122 2fv4_B Hypothetical 24.6 kDa p 20.7 46 0.0016 23.0 1.8 24 42-65 13-37 (77)
123 3iwt_A 178AA long hypothetical 20.4 1.6E+02 0.0055 22.6 5.3 34 50-83 42-77 (178)
No 1
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=100.00 E-value=4.4e-54 Score=381.00 Aligned_cols=226 Identities=32% Similarity=0.479 Sum_probs=174.1
Q ss_pred CCCCCCCCCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhh
Q psy13938 7 PMPVAKDSAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQE 85 (245)
Q Consensus 7 ~~~~~~~~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~ 85 (245)
.+|+++.++.|+|+++++|+||||||.+|.+. .++.|.||++|+++|+++|++|||+|.+++|+|++||.+.|++|+++
T Consensus 4 ~~~~~~~~~~Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 4 KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp ----CCTTCBCCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS
T ss_pred ccCCCCcccccCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999864 68999999999999999999999999999999999999999999988
Q ss_pred cCCCCceEEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCC-------
Q psy13938 86 DHSDADCLVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRAN------- 147 (245)
Q Consensus 86 ~~~~~d~~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~------- 147 (245)
+|..+||+||||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+...+++.
T Consensus 84 ~h~~~d~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~~~~~~~l~ 163 (278)
T 3od5_A 84 SHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLD 163 (278)
T ss_dssp CCTTBSCEEEEEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCEECCC-----------
T ss_pred cccCCCEEEEEEECCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcccCCeeccccccccccccc
Confidence 999999999999999987 89999999999999999999999999999999999887533210
Q ss_pred -ccccc-CCCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEee--c-cCc---cccC---------CCc-cc--cC
Q psy13938 148 -TETDA-GVNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLVS--R-ANT---ETDA---------GVN-AY--KI 207 (245)
Q Consensus 148 -~e~~~-~~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~~--~-~~~---e~d~---------~~~-~~--~i 207 (245)
.+++. ..+...+|.++|||++|||+||++|||...+ ++|.+.+ . ... ..+. .+. .. ..
T Consensus 164 ~~~~~~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~~~--GS~fIq~L~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~ 241 (278)
T 3od5_A 164 TNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVN--GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFC 241 (278)
T ss_dssp ----------CCCEETTTTEEEEESSCTTBCCEEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCCCCC
T ss_pred ccccccccccccccCCCCCeEEEEeCCCCeEEecCCCC--CcHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhcC
Confidence 11110 2235679999999999999999999986433 4554311 1 110 0000 000 00 01
Q ss_pred CCc-cceeeeeccccCcccccccccCCCc
Q psy13938 208 PSY-ADFLIAYSTVEDCKLCLYPFIFPNP 235 (245)
Q Consensus 208 P~~-aDfL~~~sTve~~tl~~~~~~~pg~ 235 (245)
|.. ..-.-|||.+. +||||+|||+|+.
T Consensus 242 ~~~~~~~~kQ~P~~~-stLtk~lyf~~~~ 269 (278)
T 3od5_A 242 KDPSAIGKKQVPCFA-SMLTKKLHFFPKS 269 (278)
T ss_dssp SSGGGTTCBCCCEEE-ECCCSBCCCCCC-
T ss_pred CCccccCceEcceeE-EecceEEEeCCCC
Confidence 111 11446888775 8999999999985
No 2
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=100.00 E-value=1.4e-53 Score=374.31 Aligned_cols=225 Identities=36% Similarity=0.607 Sum_probs=159.7
Q ss_pred CCCCCCCCCcccCCCCCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhc
Q psy13938 7 PMPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQED 86 (245)
Q Consensus 7 ~~~~~~~~~~Y~m~~~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~ 86 (245)
+.|+++.++.|+|+++++|+||||||.+|....++.|.||++|+++|+++|++|||+|++++|+|++||.+.|++|++++
T Consensus 3 ~~~~~~~~~~Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~ 82 (259)
T 3sir_A 3 GSVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQN 82 (259)
T ss_dssp SSCCCSSCSBCCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSC
T ss_pred CCCCCCccCcCCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999865689999999999999999999999999999999999999999999888
Q ss_pred CCCCceEEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCCccccc-CC
Q psy13938 87 HSDADCLVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDA-GV 154 (245)
Q Consensus 87 ~~~~d~~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~~e~~~-~~ 154 (245)
|..+||++|||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+...++. .+++. ..
T Consensus 83 h~~~d~~v~~~lsHG~~g~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlf~iQACRG~~~~~g~~~~~~~-~~~dg~~~ 161 (259)
T 3sir_A 83 HSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLAGKPKLFFIQACQGDRLDGGVTMQRSQ-TETDGDSS 161 (259)
T ss_dssp CTTEEEEEEEEEECTTCCCCCCTTHHHHHHHTTGGGSTTTCGGGSSSCEEEEEEEETTSCEEC-----------------
T ss_pred ccCCCEEEEEEecCCCCCeEEeCCCcEEHHHHHHHhhhccCccccCCCCEEEEecCCCCcccCCcccccCc-ccccCccc
Confidence 99999999999999987 8999999999999999999999999999999999887653220 23331 12
Q ss_pred CCcCCCCCCCeEEEecccCCchhhccCccccCcEEEee--c-cCcc---ccC---------CCc-cc--cCCC--cccee
Q psy13938 155 NAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLVS--R-ANTE---TDA---------GVN-AY--KIPS--YADFL 214 (245)
Q Consensus 155 ~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~~--~-~~~e---~d~---------~~~-~~--~iP~--~aDfL 214 (245)
....+|.++|||++|||+||+++||... .++|.+.+ . .... .+. .+. .+ ..|. ...--
T Consensus 162 ~~~~ip~~aD~Li~yST~pG~vs~r~~~--~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V~~~~~s~~~~~~~~~~~ 239 (259)
T 3sir_A 162 MSYKIPVHADFLIAYSTVPGFYSWRNTT--RGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFESCTPDTPEMHQQ 239 (259)
T ss_dssp -CEECCCCTTEEEEEEEECCSCCCSSCC--CSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHTTC-------------
T ss_pred ccccCCCCCCEEEEEECCCCeEeecCCC--CCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcccCCcccccCCc
Confidence 3567999999999999999999997643 35554311 1 1110 000 000 00 0111 11234
Q ss_pred eeeccccCcccccccccCCCc
Q psy13938 215 IAYSTVEDCKLCLYPFIFPNP 235 (245)
Q Consensus 215 ~~~sTve~~tl~~~~~~~pg~ 235 (245)
-|||.+ .+||||+|||.|.+
T Consensus 240 kQ~P~~-~stLtk~lyF~~k~ 259 (259)
T 3sir_A 240 KQIPCI-TTMLTRILRFSDKQ 259 (259)
T ss_dssp -CCCEE-EECCSSBCCCC---
T ss_pred eEeeEe-EEeeceEEEcCCCC
Confidence 577744 68999999999874
No 3
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=100.00 E-value=1.4e-52 Score=370.26 Aligned_cols=220 Identities=27% Similarity=0.398 Sum_probs=163.6
Q ss_pred CCCcccCCCCCceEEEEEeCCCCCCC--------CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhh
Q psy13938 13 DSAEYNMSHPRRGRALVFNHDEFQMD--------NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQ 84 (245)
Q Consensus 13 ~~~~Y~m~~~~~G~aLIInn~~F~~~--------~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~ 84 (245)
..+.|+|+++++|+||||||.+|... .++.|.||++|+++|+++|++|||+|.+++|+|++||.+.|++|++
T Consensus 6 ~~~~Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 6 LDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp -CCBCCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999841 3899999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEeccCCcc------------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeee-cCC---Cc
Q psy13938 85 EDHSDADCLVITVLTHGLG------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLV-SRA---NT 148 (245)
Q Consensus 85 ~~~~~~d~~vv~ilSHG~~------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~-d~~---~~ 148 (245)
++|..+||++|||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+.+. +++ ..
T Consensus 86 ~~h~~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~gv~~~~~~~~~~~~ 165 (271)
T 3h11_B 86 MDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPYL 165 (271)
T ss_dssp SCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCC---------------
T ss_pred hcCCCCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcccCCceeccCCcccccc
Confidence 8999999999999999987 8999999999999999999999999999999999988763 221 01
Q ss_pred ccc-cCCCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEee--c-cCc----cccCCCc----cccC---CCccce
Q psy13938 149 ETD-AGVNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLVS--R-ANT----ETDAGVN----AYKI---PSYADF 213 (245)
Q Consensus 149 e~~-~~~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~~--~-~~~----e~d~~~~----~~~i---P~~aDf 213 (245)
+.+ +......+|.++|||++|||+||++|||...+ ++|.+.+ . ... ..+.... ...+ ....+.
T Consensus 166 e~d~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~~~--GS~fIq~L~~~l~~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~ 243 (271)
T 3h11_B 166 EMALSSPQTRYIPDEADFLLGMATVNNCVSYRNPAE--GTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDKKNM 243 (271)
T ss_dssp -------CCCCSCSSSSEEEEESSCTTBCCEEETTT--EEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHTC------
T ss_pred ccccccccccccCCCCceEEEEECCCCceeecCCCC--CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcccCCCC
Confidence 222 11234569999999999999999999976533 4554311 1 111 0010000 0011 101123
Q ss_pred eeeeccccCcccccccccCCCc
Q psy13938 214 LIAYSTVEDCKLCLYPFIFPNP 235 (245)
Q Consensus 214 L~~~sTve~~tl~~~~~~~pg~ 235 (245)
--||| +..+||||+|||++..
T Consensus 244 ~kQ~P-~~~stLtk~lyf~~~~ 264 (271)
T 3h11_B 244 GKQMP-QPTFTLRKKLVFPSDV 264 (271)
T ss_dssp CCCCC-EEEECCCSBCCCCCC-
T ss_pred CEEee-EEEEEeeeEEEeCCcc
Confidence 45777 4589999999999874
No 4
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=100.00 E-value=5.8e-52 Score=366.97 Aligned_cols=212 Identities=30% Similarity=0.466 Sum_probs=168.0
Q ss_pred CCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCce
Q psy13938 14 SAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADC 92 (245)
Q Consensus 14 ~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~ 92 (245)
.+.|+|+++++|+||||||.+|.+. .++.|.|+++|+++|+++|++|||+|.+++|+|++||.+.|++|++++|..+||
T Consensus 34 ~~~Y~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~ 113 (277)
T 4ehd_A 34 DNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSS 113 (277)
T ss_dssp CCBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEE
T ss_pred cccccCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCE
Confidence 3579999999999999999999853 688999999999999999999999999999999999999999999989999999
Q ss_pred EEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCCcccccCCCCcCCCC
Q psy13938 93 LVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPS 161 (245)
Q Consensus 93 ~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~~e~~~~~~~~~ip~ 161 (245)
++|||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+.. ++. .+. +.+...+|.
T Consensus 114 ~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~~~-~~~-~~~--~~~~~~ip~ 189 (277)
T 4ehd_A 114 FVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIET-DSG-VDD--DMACHKIPV 189 (277)
T ss_dssp EEEEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCCCC--------------CCCCT
T ss_pred EEEEEEcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcccCCccc-cCC-ccc--cccccccCC
Confidence 99999999987 899999999999999999999999999999999988765 221 111 234577999
Q ss_pred CCCeEEEecccCCchhhccCccccCcEEEe--ec-cCc---cccC---------CCc-cc----cCCCccceeeeecccc
Q psy13938 162 YADFLIAYSTVEDSLLACRGTKLDGGVRLV--SR-ANT---ETDA---------GVN-AY----KIPSYADFLIAYSTVE 221 (245)
Q Consensus 162 ~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~-~~~---e~d~---------~~~-~~----~iP~~aDfL~~~sTve 221 (245)
++|||++|||+||+++||...+ ++|.+. +. ... ..+. .+. .+ .-|. .+-.-|||.+
T Consensus 190 ~aD~Li~yST~pG~vs~r~~~~--GS~fIq~L~~~l~~~~~~~dl~~ilt~V~~~V~~~~es~~~~~~-~~~~kQ~P~~- 265 (277)
T 4ehd_A 190 EADFLYACSTAPGYYSWRNSKD--GSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDAT-FHAKKQIPCI- 265 (277)
T ss_dssp TTTEEEEESSCTTBCCEEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSSGG-GTTCBCCCEE-
T ss_pred CCCEEEEEECCCCeEeecCCCC--CcHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhccCCCC-cCCceEeeEE-
Confidence 9999999999999999976432 455431 11 100 0000 000 00 0111 1345688877
Q ss_pred CcccccccccCC
Q psy13938 222 DCKLCLYPFIFP 233 (245)
Q Consensus 222 ~~tl~~~~~~~p 233 (245)
.+||||+|||+|
T Consensus 266 ~stLtk~lyf~p 277 (277)
T 4ehd_A 266 VSMLTKELYFYH 277 (277)
T ss_dssp EECCSSBCCSCC
T ss_pred EEecceEEEeCC
Confidence 469999999998
No 5
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=100.00 E-value=1e-51 Score=364.76 Aligned_cols=224 Identities=41% Similarity=0.678 Sum_probs=175.5
Q ss_pred cCCCCCCCCCcccCCCCCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhh
Q psy13938 6 VPMPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQE 85 (245)
Q Consensus 6 ~~~~~~~~~~~Y~m~~~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~ 85 (245)
+.+|+.+..+.|+|+++++|+||||||.+|....+..|.|+++|+++|+++|++|||+|++++|+|++||.+.|++|+++
T Consensus 14 ~~~~~~~~~~~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 14 ARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EECCSCTTCSBCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTS
T ss_pred eeccCCcccccccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHh
Confidence 56888999999999999999999999999986568999999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCCcccccC-
Q psy13938 86 DHSDADCLVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAG- 153 (245)
Q Consensus 86 ~~~~~d~~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~~e~~~~- 153 (245)
+|..+||++|||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+...+ .+++..
T Consensus 94 dh~~~d~~v~~~lsHG~~~~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~~~~g~~~~~---~~~d~~~ 170 (272)
T 1m72_A 94 DHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDGGITLSR---TETDGSP 170 (272)
T ss_dssp CCTTEEEEEEEEESCEETTEEECSSSEECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBCBCCEEEEC----------
T ss_pred hcCCCCEEEEEEcCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEeCCCCCcccCCccccc---ccccccc
Confidence 999999999999999976 89999999999999999999999999999999999976421 223311
Q ss_pred CCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ec-cCc---cccC---------CCc-ccc--CCCcc--ce
Q psy13938 154 VNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SR-ANT---ETDA---------GVN-AYK--IPSYA--DF 213 (245)
Q Consensus 154 ~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~-~~~---e~d~---------~~~-~~~--iP~~a--Df 213 (245)
.....+|.++|||++|||+||++|||... .++|.+. +. ... ..+. .+. .+. .|... +-
T Consensus 171 ~~~~~iP~~aD~Li~ysT~pG~vs~r~~~--~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V~~~~~s~~~~~~~~~~ 248 (272)
T 1m72_A 171 STSYRIPVHADFLIAFSTVPGYFSWRNTT--RGSWFMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQ 248 (272)
T ss_dssp --CEEECTTCSEEEEESSCTTBCCEEETT--TEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCTTCGGGTT
T ss_pred ccccccCCCCCEEEEEeCCCCcEeecCCC--CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcccccccccCC
Confidence 13457999999999999999999997643 2455431 11 000 0010 000 000 11111 23
Q ss_pred eeeeccccCcccccccccCCCc
Q psy13938 214 LIAYSTVEDCKLCLYPFIFPNP 235 (245)
Q Consensus 214 L~~~sTve~~tl~~~~~~~pg~ 235 (245)
.-|+|.+ .++|+|+|||.|++
T Consensus 249 ~kQ~P~~-~stLtk~lyf~~~~ 269 (272)
T 1m72_A 249 QKQVPCI-TSMLTRLLVFGKKQ 269 (272)
T ss_dssp CBCCCEE-EECCSSBCCCCC--
T ss_pred ceEccee-eeeccceEEeCCCC
Confidence 4577755 48999999999984
No 6
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=100.00 E-value=4.5e-51 Score=366.04 Aligned_cols=226 Identities=39% Similarity=0.649 Sum_probs=169.2
Q ss_pred cCCCCCCCCCcccCCCCCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhh
Q psy13938 6 VPMPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQE 85 (245)
Q Consensus 6 ~~~~~~~~~~~Y~m~~~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~ 85 (245)
+.+|+.+..+.|+|+++++|+||||||.+|....++.|.|+++|+++|+++|++|||+|.+++|+|++||.+.|++|+++
T Consensus 42 ~~~~~~~~~~~Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 42 ARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp ----CCSSCSBCCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSS
T ss_pred eecccCCccccccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHh
Confidence 56788888899999999999999999999986568999999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCCcccccC-
Q psy13938 86 DHSDADCLVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAG- 153 (245)
Q Consensus 86 ~~~~~d~~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~~e~~~~- 153 (245)
+|..+||+||||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+...+ .+++..
T Consensus 122 dh~~~D~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~---~~~d~~~ 198 (310)
T 2nn3_C 122 DHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDGGITLSR---TETDGSP 198 (310)
T ss_dssp CGGGBSCEEEEEEEEEETTEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCCCCCC--------------
T ss_pred ccCCCCEEEEEEeCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEecccCCccccCccccc---ccccccc
Confidence 899999999999999976 89999999999999999999999999999999998875321 122311
Q ss_pred CCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ec-cCcc---ccC---------CCc-ccc--CCCc--cce
Q psy13938 154 VNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SR-ANTE---TDA---------GVN-AYK--IPSY--ADF 213 (245)
Q Consensus 154 ~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~-~~~e---~d~---------~~~-~~~--iP~~--aDf 213 (245)
.....+|.++|||++|||+||++|||... .++|.+. +. .... .+. .+. .+. .|.. .+-
T Consensus 199 ~~~~~iP~~aD~LiayST~pG~vS~R~~~--~GSwFIqaL~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~s~~p~~~~~~~ 276 (310)
T 2nn3_C 199 STSYRIPVHADFLIAFSTVPGYFSWRNTT--RGSWFMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQ 276 (310)
T ss_dssp --CCCCCCSTTEEEEECCCCCEEESSSSE--EEEHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHTTSSSCCSSCSCC
T ss_pred ccccccCCCCCEEEEEeCCCCceeecCCC--CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcccccccccCC
Confidence 13457999999999999999999997643 2455431 11 1110 010 000 000 1111 123
Q ss_pred eeeeccccCcccccccccCCCccc
Q psy13938 214 LIAYSTVEDCKLCLYPFIFPNPLS 237 (245)
Q Consensus 214 L~~~sTve~~tl~~~~~~~pg~~s 237 (245)
.-|+|.+ .++|+|+|||.|++.+
T Consensus 277 ~kQ~P~~-~stLtk~lyF~~~~~~ 299 (310)
T 2nn3_C 277 QKQVPCI-TSMLTRLLVFGKKQSH 299 (310)
T ss_dssp SCCCCEE-EECCSSBCCC------
T ss_pred ceEccee-eeeccceEEeCCCCCC
Confidence 4577755 4889999999998643
No 7
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=100.00 E-value=1.2e-50 Score=359.01 Aligned_cols=217 Identities=25% Similarity=0.381 Sum_probs=157.4
Q ss_pred CCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCce
Q psy13938 14 SAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADC 92 (245)
Q Consensus 14 ~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~ 92 (245)
...|+|+++++|+||||||.+|... .++.|.|+++|+++|+++|++|||+|++++|+|++||.+.|++|++++|..+||
T Consensus 11 ~~~Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~h~~~D~ 90 (277)
T 1nw9_B 11 DLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGALDC 90 (277)
T ss_dssp TTBCCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTTCSE
T ss_pred cceeeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhcccCCe
Confidence 3579999999999999999999854 589999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCcc-------------------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeee-cCCC-----
Q psy13938 93 LVITVLTHGLG-------------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLV-SRAN----- 147 (245)
Q Consensus 93 ~vv~ilSHG~~-------------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~-d~~~----- 147 (245)
+||||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+... +++.
T Consensus 91 ~vv~ilSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~~~~~~~~~~ 170 (277)
T 1nw9_B 91 CVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPG 170 (277)
T ss_dssp EEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---------------------
T ss_pred EEEEEeCCCCccccccCCCcEEecCCceeeHHHHHHHhcccCChhHcCCCcEEEEeccCCCcccCCceeccCCccccccc
Confidence 99999999953 7899999999999999999999999999999999887542 1110
Q ss_pred --ccccc------------CCCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEee--c-cCc---cccCCCcc---
Q psy13938 148 --TETDA------------GVNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLVS--R-ANT---ETDAGVNA--- 204 (245)
Q Consensus 148 --~e~~~------------~~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~~--~-~~~---e~d~~~~~--- 204 (245)
.+.++ ..+...+|.++|||++|||+||++|||+.. .++|.+.+ . ... ..+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~aD~Li~ysT~pG~vs~R~~~--~GS~fiq~L~~~l~~~~~~~dl~~ilt~V 248 (277)
T 1nw9_B 171 SNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDPK--SGSWYVETLDDIFEQWAHSEDLQSLLLRV 248 (277)
T ss_dssp ------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCTT--SCBHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCCCCEEEEEcCCCCeEEEcCCC--CCcHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 11110 112457999999999999999999997643 35564311 1 111 00100000
Q ss_pred -ccCCCccceeeeeccccCcccccccccCCC
Q psy13938 205 -YKIPSYADFLIAYSTVEDCKLCLYPFIFPN 234 (245)
Q Consensus 205 -~~iP~~aDfL~~~sTve~~tl~~~~~~~pg 234 (245)
..+-. ..-.-|||.+ .++|+|+|||.|.
T Consensus 249 ~~~V~~-~~~~kQ~P~~-~stL~k~lyf~~~ 277 (277)
T 1nw9_B 249 ANAVSV-KGIYKQMPGC-FNFLRKKLFFKTS 277 (277)
T ss_dssp HHHHHT-TCCSCCCCCC-EECCSSBCCCCCC
T ss_pred HHHHhh-ccCccCcccc-eeeeceeEecCCC
Confidence 01100 1223467654 7899999999884
No 8
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.5e-50 Score=361.92 Aligned_cols=217 Identities=21% Similarity=0.306 Sum_probs=169.7
Q ss_pred CCCcccCCCCC--ceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhh-hcCCC
Q psy13938 13 DSAEYNMSHPR--RGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQ-EDHSD 89 (245)
Q Consensus 13 ~~~~Y~m~~~~--~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~-~~~~~ 89 (245)
..+.|+|..++ +|+||||||.+|. .++.|.|+++|+++|+++|++|||+|.+++|+|++||.+.|++|++ .+|..
T Consensus 47 ~~e~Y~m~~~~~~~r~aLII~N~~f~--~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~dh~~ 124 (302)
T 3e4c_A 47 SAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKT 124 (302)
T ss_dssp GGGBCCCCCTTTCCCEEEEEECCSCS--SSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGG
T ss_pred cccccccCCCCCCccEEEEEECcCCC--CCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhhhccCC
Confidence 45679999875 7999999999998 6899999999999999999999999999999999999999999986 58999
Q ss_pred CceEEEEeccCCcc-----------------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCC-----
Q psy13938 90 ADCLVITVLTHGLG-----------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRAN----- 147 (245)
Q Consensus 90 ~d~~vv~ilSHG~~-----------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~----- 147 (245)
+||++|||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.++. .|+..
T Consensus 125 ~d~~vv~~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~~~~~~-~ds~~~~~~~ 203 (302)
T 3e4c_A 125 SDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSPGVVWF-KDSVGVSGNL 203 (302)
T ss_dssp CSCEEEEEEEEEETTEEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSCCCCCC-CCC-------
T ss_pred CCEEEEEEeccCcCCeEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCCCccee-ccCccccccc
Confidence 99999999999964 79999999999999999999999999999999865442 23310
Q ss_pred ----cccccCCCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEee--c-cCc---cccCCCc----cccCCCccce
Q psy13938 148 ----TETDAGVNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLVS--R-ANT---ETDAGVN----AYKIPSYADF 213 (245)
Q Consensus 148 ----~e~~~~~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~~--~-~~~---e~d~~~~----~~~iP~~aDf 213 (245)
.+..+.++...+|.++|||++|||+||++|||+.. .++|.+.+ . ... ..+.... ...+-+ .+.
T Consensus 204 ~~~~~~~~~~d~~~~ip~~aDfLi~yST~pG~vS~R~~~--~GSwFIqaL~~~l~~~~~~~dl~~il~~V~~~v~~-~~~ 280 (302)
T 3e4c_A 204 SLPTTEEFEDDAIKKAHIEKDFIAFCSSTPDNVSWRHPT--MGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ-PDG 280 (302)
T ss_dssp -CCCCCCCCCHHHHTSCSSCSEEEEEECCCCCCCSSSTT--CCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSS-CCS
T ss_pred ccccccccccccccccCCCCCEEEEEeCCCCceeecCCC--CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-CCC
Confidence 00010123456899999999999999999997643 35564321 1 111 0010000 011111 234
Q ss_pred eeeeccccCcccccccccCCCc
Q psy13938 214 LIAYSTVEDCKLCLYPFIFPNP 235 (245)
Q Consensus 214 L~~~sTve~~tl~~~~~~~pg~ 235 (245)
.-|||++++++|||+||||||+
T Consensus 281 ~kQ~P~~~~ssLtk~fyf~PG~ 302 (302)
T 3e4c_A 281 RAQMPTTERVTLTRCFYLFPGH 302 (302)
T ss_dssp SCCCCEEECBCCCSBCCCCTTC
T ss_pred ceeeeeeeccCCcceEEeCCCC
Confidence 5799988899999999999996
No 9
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=6.9e-51 Score=366.25 Aligned_cols=174 Identities=25% Similarity=0.363 Sum_probs=138.3
Q ss_pred CCCcccCCCC-CceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCC-CC
Q psy13938 13 DSAEYNMSHP-RRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHS-DA 90 (245)
Q Consensus 13 ~~~~Y~m~~~-~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~-~~ 90 (245)
..+.|+|+++ ++|+||||||.+|.... ..|.|+++|+++|+++|++|||+|++++|+|++||.+.|++|++++|. .+
T Consensus 49 ~~~~Y~m~~~~~rg~aLIInN~~F~~~~-~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~ 127 (316)
T 2fp3_A 49 ILGTYKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNT 127 (316)
T ss_dssp SSCBCCCCCSSCSEEEEEEECCCCSSTT-SCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTC
T ss_pred ccccccCCCCCCCcEEEEEeCcccCCCC-CCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCC
Confidence 4557999999 99999999999998534 899999999999999999999999999999999999999999999998 99
Q ss_pred ceEEEEeccCCcc----------------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCC-------
Q psy13938 91 DCLVITVLTHGLG----------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRAN------- 147 (245)
Q Consensus 91 d~~vv~ilSHG~~----------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~------- 147 (245)
||+||||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+.....+.
T Consensus 128 D~~vv~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~~~~~~~~~~~ 207 (316)
T 2fp3_A 128 ECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEYDLGHPKNQGNLMEPVYTA 207 (316)
T ss_dssp SCEEEEEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC-----------------------
T ss_pred CEEEEEEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcccCCceeccCccccccccc
Confidence 9999999999965 89999999999999999999999999999999998876521100
Q ss_pred --------cccccCCCCcCCCCCCCeEEEecccCCchhhccCccccCcEE
Q psy13938 148 --------TETDAGVNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVR 189 (245)
Q Consensus 148 --------~e~~~~~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~ 189 (245)
.+.++..+...+|.++|||++|||+||++|||+... ++|.
T Consensus 208 ~~~~~~~~~~~d~~~~~~~iP~~aD~Li~yST~pG~vS~R~~~~--GSwF 255 (316)
T 2fp3_A 208 QEEKWPDTQTEGIPSPSTNVPSLADTLVCYANTPGYVTHRDLDT--GSWY 255 (316)
T ss_dssp ----------------CCCCCCCCSEEEEECCCSCCCBTTTBCH--HHHH
T ss_pred ccccccccccccccccccccCCCCCEEEEEeCCCCceeccCCCC--CCHH
Confidence 011111345679999999999999999999976433 4554
No 10
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=100.00 E-value=1.7e-50 Score=353.16 Aligned_cols=169 Identities=37% Similarity=0.608 Sum_probs=147.8
Q ss_pred CcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceE
Q psy13938 15 AEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCL 93 (245)
Q Consensus 15 ~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~ 93 (245)
+.|+|+++++|+||||||.+|... .++.|.|+++|+++|+++|++|||+|.+++|+|++||.+.|++|++++|..+||+
T Consensus 7 ~~Y~m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~ 86 (250)
T 2j32_A 7 NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSF 86 (250)
T ss_dssp CBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEE
T ss_pred ccccCCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEE
Confidence 579999999999999999999854 5899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCCcccccCCCCcCCCCC
Q psy13938 94 VITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSY 162 (245)
Q Consensus 94 vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~~e~~~~~~~~~ip~~ 162 (245)
+|||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+.. ++. .+. +.+...+|.+
T Consensus 87 v~~~lsHG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~~~g~~~-~~~-~~~--~~~~~~ip~~ 162 (250)
T 2j32_A 87 VCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIAT-DSG-VDD--DMACHKIPVE 162 (250)
T ss_dssp EEEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEECBCCCCC--------------CCCCTT
T ss_pred EEEECCCCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcccCCccc-cCC-ccc--cccccccCCC
Confidence 9999999976 899999999999999999999999999999999988754 221 111 1234679999
Q ss_pred CCeEEEecccCCchhhccCccccCcEE
Q psy13938 163 ADFLIAYSTVEDSLLACRGTKLDGGVR 189 (245)
Q Consensus 163 ~D~li~ysT~pg~~~~~~g~~~d~gv~ 189 (245)
+|||++|||+||++|||... .++|.
T Consensus 163 aD~Li~ysT~pG~vs~r~~~--~gS~f 187 (250)
T 2j32_A 163 ADFLYAYSTAPGYYSWRNSK--DGSWF 187 (250)
T ss_dssp TTEEEEESSCTEECCEEETT--TEEHH
T ss_pred CCEEEEEeCCCccEEecCCC--CCcHH
Confidence 99999999999999998653 24554
No 11
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=100.00 E-value=1.1e-49 Score=356.72 Aligned_cols=174 Identities=37% Similarity=0.609 Sum_probs=146.8
Q ss_pred CCCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCc
Q psy13938 13 DSAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDAD 91 (245)
Q Consensus 13 ~~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d 91 (245)
+.+.|+|+++++|+||||||.+|.+. .+++|.|+++|+++|+++|++|||+|.++.|+|++||.+.|++|++++|..+|
T Consensus 58 ~~~~Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d 137 (305)
T 1f1j_A 58 PTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAA 137 (305)
T ss_dssp --CBCCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEE
T ss_pred cccccccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCC
Confidence 35679999999999999999999864 68999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeecCCCcccccCCCCcCCC
Q psy13938 92 CLVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIP 160 (245)
Q Consensus 92 ~~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d~~~~e~~~~~~~~~ip 160 (245)
|++|||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+....++..+.+ ......+|
T Consensus 138 ~~vv~ilsHG~~~~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~~~~~~-~~~~~~ip 216 (305)
T 1f1j_A 138 CFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTD-ANPRYKIP 216 (305)
T ss_dssp EEEEEEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCBC----------------CBC
T ss_pred EEEEEEecCCCCCeEEecCCeEEHHHHHHHhhhccChhhcCCceEEEeccccCCcccCCccccCCcccccc-cccccccC
Confidence 999999999987 899999999999999999999999999999999988765211111112 12246799
Q ss_pred CCCCeEEEecccCCchhhccCccccCcEE
Q psy13938 161 SYADFLIAYSTVEDSLLACRGTKLDGGVR 189 (245)
Q Consensus 161 ~~~D~li~ysT~pg~~~~~~g~~~d~gv~ 189 (245)
.++|||++|||.||+++||... .++|.
T Consensus 217 ~~aD~LiayST~pG~vs~r~~~--~GS~F 243 (305)
T 1f1j_A 217 VEADFLFAYSTVPGYYSWRSPG--RGSWF 243 (305)
T ss_dssp TTTTEEEEESSCTTBCCEEETT--TEEHH
T ss_pred CCCCEEEEEECCCCeeccCCCC--CCCHH
Confidence 9999999999999999997543 24554
No 12
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=100.00 E-value=4.6e-49 Score=347.48 Aligned_cols=214 Identities=24% Similarity=0.288 Sum_probs=149.6
Q ss_pred ccCCCCCCCCCcccCCCCCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhh
Q psy13938 5 EVPMPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQ 84 (245)
Q Consensus 5 ~~~~~~~~~~~~Y~m~~~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~ 84 (245)
.+++|+....+.|+|+++++|+||||||.. +|+++|+++|++|||+|.+++|+|++||.+.|++|++
T Consensus 24 ~~~~~~~~~~~~Y~m~~~~rG~~LIinn~~-------------~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 24 EAFLPQSIPEERYKMKSKPLGICLIIDCIG-------------NETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp -----CCSSSCBCCCCCSSSEEEEEEESSC-------------CCCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHT
T ss_pred cCCCCCCCccccCCCCCCcceEEEEECCch-------------HHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHh
Confidence 357788888899999999999999999952 5999999999999999999999999999999999998
Q ss_pred -hcCCCCceEEEEeccCCcc--------------hhhhhhccccccccccCCCceEEEEecccCcc--cCCCeee-ecCC
Q psy13938 85 -EDHSDADCLVITVLTHGLG--------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTK--LDGGVRL-VSRA 146 (245)
Q Consensus 85 -~~~~~~d~~vv~ilSHG~~--------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~--~~~gv~~-~d~~ 146 (245)
++|..+|||+|||||||.+ +++|+++|++.+||+|+|||||||||||||+. .+.|+.+ .|+.
T Consensus 91 ~~dh~~~d~~v~~ilSHG~~g~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~~~~~g~~~~~D~~ 170 (272)
T 3h11_A 91 MPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEGQLENSSLLEVDGP 170 (272)
T ss_dssp CGGGGGCSEEEEEEEEEEETTEECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEEC----------------
T ss_pred ccccCCCCEEEEEEEcCCCCCeEEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEECCCCCCcccCCCcceeccCc
Confidence 5899999999999999975 89999999999999999999999999999974 3445322 2332
Q ss_pred Cc---cccc-CCCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-Cccc--cCCC----ccccC---CCc
Q psy13938 147 NT---ETDA-GVNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-NTET--DAGV----NAYKI---PSY 210 (245)
Q Consensus 147 ~~---e~~~-~~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~~e~--d~~~----~~~~i---P~~ 210 (245)
.. +... ......+|.++|||++|||+||+++||+..+ |+|.+. +.. .... +... ...++ -+.
T Consensus 171 ~~~~~~~~~~~~~~~~iP~~aDfL~~yST~pg~~s~R~~~~--GSwfIq~Lc~~l~~~~~~dl~~ilt~Vn~~V~~~~~~ 248 (272)
T 3h11_A 171 AMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSHSS--PSLYLQCLSQKLRQERKRPLLDLHIELNGYMYDWNSR 248 (272)
T ss_dssp ----------------CCTTCSEEEEEEEEEGGGTSSTTCC--CCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccCCCCCCEEEEEeccCCeEEEEeCCC--CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc
Confidence 10 1000 1235679999999999999999999986533 556431 111 1000 0000 00011 000
Q ss_pred cceeeeeccccCcccccccccCC
Q psy13938 211 ADFLIAYSTVEDCKLCLYPFIFP 233 (245)
Q Consensus 211 aDfL~~~sTve~~tl~~~~~~~p 233 (245)
.+---+|.+++.+||||+|||+|
T Consensus 249 ~~~~~~~~p~~~stLtkklyf~P 271 (272)
T 3h11_A 249 VSAKEKYYVWLQHTLRKKLILSY 271 (272)
T ss_dssp SCGGGCEEEEEEECCCSBCCSSC
T ss_pred CCCcceEeeEeeeeeeeEEEeCC
Confidence 11124556678899999999998
No 13
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=100.00 E-value=2.9e-47 Score=315.73 Aligned_cols=139 Identities=41% Similarity=0.666 Sum_probs=117.4
Q ss_pred cCCCCCCCCCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhh
Q psy13938 6 VPMPVAKDSAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQ 84 (245)
Q Consensus 6 ~~~~~~~~~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~ 84 (245)
+.+|+....+.|+|+++++|+||||||.+|.+. .++.|.||++|+++|+++|++|||+|++++|+|++||.+.|+++++
T Consensus 26 ~~~~~~~~~~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 26 YKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVST 105 (179)
T ss_dssp -----CCTTCBCCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred cccccCCccccCCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhh
Confidence 346778888999999999999999999999865 7899999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeeec
Q psy13938 85 EDHSDADCLVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVS 144 (245)
Q Consensus 85 ~~~~~~d~~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~d 144 (245)
++|+.+|||||||||||.+ +++|+++|++.+||+|+|||||||||||||++.|.|+...|
T Consensus 106 ~dh~~~dc~vvvilSHG~~g~I~g~D~~v~l~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~d~Gv~~~d 176 (179)
T 3p45_A 106 VSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLD 176 (179)
T ss_dssp SCCTTBSCEEEEEESCEETTEEECSSSEEEHHHHHGGGSGGGCGGGTTSCEEEEEECC-------------
T ss_pred hhcCCCCEEEEEEeccCCCCEEEEECCEEEHHHHHHhcccccChhhCCCCcEEEEECCCCCCCCCCccCCC
Confidence 9999999999999999987 89999999999999999999999999999999999987643
No 14
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=100.00 E-value=2.7e-46 Score=301.69 Aligned_cols=128 Identities=39% Similarity=0.697 Sum_probs=122.5
Q ss_pred CCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCce
Q psy13938 14 SAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADC 92 (245)
Q Consensus 14 ~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~ 92 (245)
.+.|+|+++++|+||||||.+|.++ .+++|.||++|+++|+++|++|||+|++++|+|++||.+.|+++++++|+.+||
T Consensus 6 ~~~Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc 85 (146)
T 2dko_A 6 DNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSS 85 (146)
T ss_dssp CCBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTEEE
T ss_pred ccCccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHHhhcCCCCe
Confidence 3579999999999999999999865 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCee
Q psy13938 93 LVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVR 141 (245)
Q Consensus 93 ~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~ 141 (245)
|||||||||.+ +++|+++|++.+||+|+|||||||||||||++.|.|+.
T Consensus 86 ~vv~ilSHG~~g~i~g~D~~~~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~d~gv~ 145 (146)
T 2dko_A 86 FVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIE 145 (146)
T ss_dssp EEEEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCCC
T ss_pred EEEEeccCCCCCEEEEeCCcEeHHHHHHHhccccChhhcCCCeEEEEECCCCCCCcCCcc
Confidence 99999999976 89999999999999999999999999999999998864
No 15
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=100.00 E-value=8.9e-46 Score=304.02 Aligned_cols=134 Identities=34% Similarity=0.572 Sum_probs=123.1
Q ss_pred CCCCCCCcccCCCCCceEEEEEeCCCCCCC--------CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHH
Q psy13938 9 PVAKDSAEYNMSHPRRGRALVFNHDEFQMD--------NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILS 80 (245)
Q Consensus 9 ~~~~~~~~Y~m~~~~~G~aLIInn~~F~~~--------~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~ 80 (245)
+..-..+.|+|+++++|+||||||.+|.+. .+..|.||++|+++|+++|++|||+|.+++|+|++||.+.|+
T Consensus 8 ~~~~~~~~Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~ 87 (164)
T 1qtn_A 8 ESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILK 87 (164)
T ss_dssp -----CCBCCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH
T ss_pred CcccccccccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH
Confidence 444566789999999999999999999853 488999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceEEEEeccCCcc------------hhhhhhccccccccccCCCceEEEEecccCcccCCCeee
Q psy13938 81 NLSQEDHSDADCLVITVLTHGLG------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRL 142 (245)
Q Consensus 81 ~~~~~~~~~~d~~vv~ilSHG~~------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~ 142 (245)
+|++++|..+|||||||||||.+ +++|+++|++.+||+|+|||||||||||||++.+.|+.+
T Consensus 88 ~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~i~~~F~~~~CpsL~gKPKlFfiQACRG~~~d~gv~~ 161 (164)
T 1qtn_A 88 IYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV 161 (164)
T ss_dssp HHHHSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCSSSBCBCCCCC
T ss_pred HHHHhhccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHHHHHHhccccChhhcCCCeEEEEECCCCCCccCCccC
Confidence 99999999999999999999976 899999999999999999999999999999999999865
No 16
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=100.00 E-value=1.9e-45 Score=303.66 Aligned_cols=129 Identities=38% Similarity=0.724 Sum_probs=122.1
Q ss_pred CCCCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCC
Q psy13938 12 KDSAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDA 90 (245)
Q Consensus 12 ~~~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~ 90 (245)
.+.+.|+|+++++|+||||||.+|.+. ++..|.||++|+++|+++|++|||+|++++|+|++||.+.|+++++++|..+
T Consensus 32 ~p~~~Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~~dh~~~ 111 (173)
T 2ql9_A 32 VPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNA 111 (173)
T ss_dssp --CCBCCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHTSCCTTE
T ss_pred CcccccccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCC
Confidence 345679999999999999999999864 6899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCcc-----------hhhhhhccccccccccCCCceEEEEecccCcccCCCe
Q psy13938 91 DCLVITVLTHGLG-----------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGV 140 (245)
Q Consensus 91 d~~vv~ilSHG~~-----------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv 140 (245)
|||||||||||.+ +++|+++|++.+||+|+|||||||||||||++.|.|+
T Consensus 112 dc~vvvilSHG~~g~I~g~D~~~~i~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~d~Gv 172 (173)
T 2ql9_A 112 ACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGI 172 (173)
T ss_dssp EEEEEEEESCEETTEEEETTEEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCBCCB
T ss_pred CeEEEeecCCCCCCEEEEcCCcEEHHHHHHHcCcccChhHcCCCeEEEEECCCCCCccCCC
Confidence 9999999999987 8999999999999999999999999999999999886
No 17
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=100.00 E-value=4.4e-45 Score=300.58 Aligned_cols=130 Identities=34% Similarity=0.603 Sum_probs=123.7
Q ss_pred CCcccCCCCCceEEEEEeCCCCCCC-CCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhh-hcCCCCc
Q psy13938 14 SAEYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQ-EDHSDAD 91 (245)
Q Consensus 14 ~~~Y~m~~~~~G~aLIInn~~F~~~-~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~-~~~~~~d 91 (245)
.+.|+|+++++|+||||||.+|.+. .++.|.||++|+++|+++|++|||+|++++|+|++||.+.|++|++ ++|+.+|
T Consensus 23 ~~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d 102 (167)
T 1pyo_A 23 QLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQLPAHRVTD 102 (167)
T ss_dssp GGBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHTCGGGGTSS
T ss_pred cccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhhhhhccCCC
Confidence 4579999999999999999999864 6899999999999999999999999999999999999999999999 7899999
Q ss_pred eEEEEeccCCcc------------hhhhhhccccccccccCCCceEEEEecccCcccCCCeeee
Q psy13938 92 CLVITVLTHGLG------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLV 143 (245)
Q Consensus 92 ~~vv~ilSHG~~------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~~ 143 (245)
|+||||||||.+ +++|+++|++.+||+|+|||||||||||||++.|.|+.+.
T Consensus 103 c~vv~ilSHG~~g~i~g~D~~~v~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~d~Gv~~~ 166 (167)
T 1pyo_A 103 SCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQ 166 (167)
T ss_dssp EEEEEEESCEETTEEECTTSCEEEHHHHHHHTSTTTCGGGTTSCEEEEEESCSSSBCBCCEECC
T ss_pred EEEEEeCCCCCCCeEEEeCCCEEcHHHHHHHhcccCChhHcCCCeEEEEECCCCCCCCCCccCC
Confidence 999999999976 8999999999999999999999999999999999998763
No 18
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=100.00 E-value=4.6e-40 Score=273.35 Aligned_cols=132 Identities=25% Similarity=0.485 Sum_probs=118.7
Q ss_pred CCCCCCCCcccCCCCC--ceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhh-
Q psy13938 8 MPVAKDSAEYNMSHPR--RGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQ- 84 (245)
Q Consensus 8 ~~~~~~~~~Y~m~~~~--~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~- 84 (245)
++.....+.|+|++++ +|+||||||.+|. .+..|.|+++|+++|+++|++|||+|.++.|+|++||.+.|++|++
T Consensus 25 ~~~~~~~~~Y~m~~~~~~~g~ALIInn~~f~--~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~ 102 (178)
T 2h54_A 25 IWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHR 102 (178)
T ss_dssp HC---CCSBCCCCCTTTCCCEEEEEECCCCS--SSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTC
T ss_pred ccccCcccccCCCCCCCcCCEEEEEehhhcC--CCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhh
Confidence 3555677889999865 8999999999998 6899999999999999999999999999999999999999999986
Q ss_pred hcCCCCceEEEEeccCCcc-----------------hhhhhhccccccccccCCCceEEEEecccCcccCCCeee
Q psy13938 85 EDHSDADCLVITVLTHGLG-----------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRL 142 (245)
Q Consensus 85 ~~~~~~d~~vv~ilSHG~~-----------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~~~~gv~~ 142 (245)
.+|+.+||++|+|||||.+ +++|+++|++.+||+|++||||||||||||++. .++++
T Consensus 103 ~d~~~~d~~v~~~lsHG~~g~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gKPKlffiqACRg~~~-g~v~~ 176 (178)
T 2h54_A 103 PEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQACRGDSP-GVVWF 176 (178)
T ss_dssp GGGGGCSCEEEEEESCBCSSCEECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTSCEEEEEESCSSSBC-CCCCC
T ss_pred hhcCCCCEEEEEEecCCCCCeEEeecCCcccCcEEEHHHHHHHHhhcCChhhcCCceEEEEECCCCCCC-CCccC
Confidence 5799999999999999975 689999999999999999999999999999874 34554
No 19
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.94 E-value=3.1e-26 Score=210.18 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=121.0
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCC
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHG 101 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG 101 (245)
..+++||||+|.+|. ..+++.|+.+|+++|+++|+++||+|.+..|+|.++|.+.|++|++.. ...||++|+|+|||
T Consensus 3 A~~r~ALIIGn~~Y~--~~~~L~ga~~DA~~L~~~L~~lGF~V~~l~DlT~~eI~~aL~~f~~~~-~~~D~~l~yfsGHG 79 (390)
T 3uoa_B 3 AKDKVALLIGNMNYR--EHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLL-DKGVYGLLYYAGHG 79 (390)
T ss_dssp BSCEEEEEEECCCCS--SSCCCSTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTC-CTTCEEEEEEESCE
T ss_pred CCCCEEEEEEecCCC--CcccCCChHHHHHHHHHHHHHcCCeEEEeecCCHHHHHHHHHHHHhhC-CCCCEEEEEEecCc
Confidence 357999999999998 567899999999999999999999999999999999999999999875 45799999999999
Q ss_pred cc-----------------------hhhhhhccccccccccCCCceEEEEecccCc-ccCCCeeeecCCCcccccCCCCc
Q psy13938 102 LG-----------------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGT-KLDGGVRLVSRANTETDAGVNAY 157 (245)
Q Consensus 102 ~~-----------------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~-~~~~gv~~~d~~~~e~~~~~~~~ 157 (245)
.+ +++|++.|++ +.+||||||||||||+ ..+.++ ....
T Consensus 80 ~~~~g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~-----~~~K~kL~ILDACrg~~~~~~~~-------------~~~~ 141 (390)
T 3uoa_B 80 YENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQE-----KETGLNVFLLDMCRKRNDYDDTI-------------PILD 141 (390)
T ss_dssp EEETTEEEECCTTCCSSCCGGGSEEHHHHHHHHHH-----TTCSEEEEEEESCCCCCTTCCCC-------------CCCC
T ss_pred cccCCcceEEecCCCccccccceeeHHHHHHHHHh-----cCCCceEEEEECCCCCCcccccc-------------cccc
Confidence 64 4566666643 6899999999999995 333221 1123
Q ss_pred CCCCCCCeEEEecccCCchhhccC-ccccCcEE
Q psy13938 158 KIPSYADFLIAYSTVEDSLLACRG-TKLDGGVR 189 (245)
Q Consensus 158 ~ip~~~D~li~ysT~pg~~~~~~g-~~~d~gv~ 189 (245)
.+|..+|++++|||.||++||+.. ....+||.
T Consensus 142 ~ip~~ad~Li~yAT~pG~~A~r~~~d~~~gS~F 174 (390)
T 3uoa_B 142 ALKVTANIVFGYATCQGAEAFEIQHSGLANGIF 174 (390)
T ss_dssp CCCCCSCEEEEESSCTTCCCEECSSCTTCCCHH
T ss_pred cCcccCCcEEEEEcCCCcEeeecCCCCCCCCHH
Confidence 578899999999999999999853 23446664
No 20
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=99.14 E-value=5.6e-10 Score=98.44 Aligned_cols=108 Identities=16% Similarity=0.269 Sum_probs=85.2
Q ss_pred CceEEEEEeCCCCCC----CCCCCCCCcHHHHHHHHHHHHhCCcEEEEEe--CCCHHHHHHHHHHHhhhcCCCCceEEEE
Q psy13938 23 RRGRALVFNHDEFQM----DNMTPRPGSGADVKNLEAAFYALGFEVSVYT--NPEFREITEILSNLSQEDHSDADCLVIT 96 (245)
Q Consensus 23 ~~G~aLIInn~~F~~----~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~--nlt~~em~~~l~~~~~~~~~~~d~~vv~ 96 (245)
++.+||||.|.+|.. ....+..|+.+|++.|+++|+++||+|.+.. +.|.+.|.+.|+.+.+. ....|.++++
T Consensus 2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~-~~~~D~~~~y 80 (285)
T 3bij_A 2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKA-LGKGDIFMLS 80 (285)
T ss_dssp CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHH-CCTTCEEEEE
T ss_pred CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHh-CCCCCEEEEE
Confidence 478999999988642 1456889999999999999999999987665 47999999999999865 3456999999
Q ss_pred eccCCcc------------------------hhhhhhccccccccccCCCceEEEEecccCcc
Q psy13938 97 VLTHGLG------------------------EQKLWLPFTADKCRTLAGKPKIFFIQACRGTK 135 (245)
Q Consensus 97 ilSHG~~------------------------i~~I~~~f~~~~c~~L~~KPKlf~iQACRG~~ 135 (245)
|.+||.+ -++|.+.+.. ++ .++-+++|++||+...
T Consensus 81 fSGHG~~~~~~~g~e~dg~~~~l~p~D~~i~~~~l~~~l~~--l~--~~~~~~vilD~C~SG~ 139 (285)
T 3bij_A 81 YSGHGGQVPDTSNDEPDGVDETWCLFDGELIDDELYALLGK--FA--AGVRVLVFSDSCHSGT 139 (285)
T ss_dssp EESCEEEEECTTSCCTTCEEEEEECSSSEEEHHHHHHHHTT--SC--SSCEEEEEEECCCCCC
T ss_pred EcCCcccccCCCCCccCCCcceEEecCCCccHHHHHHHHHh--cc--CCCeEEEEEecCCCCc
Confidence 9999954 1255555532 22 2677899999999754
No 21
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=99.09 E-value=6.6e-12 Score=92.23 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=50.6
Q ss_pred CcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-C---ccccCCC----ccccCCCccceeeeeccccCccc
Q psy13938 156 AYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-N---TETDAGV----NAYKIPSYADFLIAYSTVEDCKL 225 (245)
Q Consensus 156 ~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~---~e~d~~~----~~~~iP~~aDfL~~~sTve~~tl 225 (245)
..++|.++|||++|||+|||+|||+..+ |+|.+. +.. . ...|... ....+-. .+..-|||.+.+++|
T Consensus 2 ~~~ip~~aDfL~~yST~pG~~S~R~~~~--GSwfIq~Lc~~l~~~~~~~dl~~il~~V~~~v~~-~~~~kQ~P~~~~stL 78 (88)
T 1sc3_B 2 IKKAHIEKDFIAFCSSTPDNVSWRHPTM--GSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ-PDGRAQMPTTERVTL 78 (88)
T ss_dssp CCCCCSSCSEEEEESSCTTBCCCEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTCS-CCSSCCCCEEESCCC
T ss_pred ccccCCCCCEEEEEeCCCCCEeeEcCCC--CCHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHhc-cCCceEcCEeEcccc
Confidence 3579999999999999999999987643 455431 111 1 0111000 0011111 355679999889999
Q ss_pred ccccccCCCc
Q psy13938 226 CLYPFIFPNP 235 (245)
Q Consensus 226 ~~~~~~~pg~ 235 (245)
+|+|||+||+
T Consensus 79 tk~lyf~pg~ 88 (88)
T 1sc3_B 79 TRCFYLFPGH 88 (88)
T ss_dssp CSBCCCCTTC
T ss_pred eeEEEcCCCC
Confidence 9999999995
No 22
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=98.95 E-value=1.8e-11 Score=94.47 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=51.1
Q ss_pred CCCCcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-Cc---ccc---------CCCccc--cCCC-cccee
Q psy13938 153 GVNAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-NT---ETD---------AGVNAY--KIPS-YADFL 214 (245)
Q Consensus 153 ~~~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~~---e~d---------~~~~~~--~iP~-~aDfL 214 (245)
+++..+||.++|||++|||+|||+|||+..+ |+|.|. +.. .. ..| ..+... ..|. ..+-.
T Consensus 6 ~~~~~~iP~eADfL~~yST~pGyvS~R~~~~--GSwFIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va~~~~~~~~~~~~~~ 83 (117)
T 3rjm_B 6 KLPKMRLPTRSDMICGYACLKGTAAMRNTKR--GSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPGTEFHRC 83 (117)
T ss_dssp --CCCCBCSSCSEEEEESSCTTCCCEEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCCCCTTSTTTTC
T ss_pred CCcCccCCCccCEEEEEcCCCCeECeeecCC--CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccCCCCccCCe
Confidence 3457789999999999999999999987543 444431 110 00 000 000000 0111 12456
Q ss_pred eeeccccCcccccccccCCCccc
Q psy13938 215 IAYSTVEDCKLCLYPFIFPNPLS 237 (245)
Q Consensus 215 ~~~sTve~~tl~~~~~~~pg~~s 237 (245)
-||+++. +||+|+|||+||+..
T Consensus 84 KQmP~~~-stLtK~lyf~pg~~~ 105 (117)
T 3rjm_B 84 KEMSEYC-STLCRHLYLFPGHPP 105 (117)
T ss_dssp BCCCEEE-ECCCSBCCCCTTCC-
T ss_pred EEeeEEE-EeECceEEeCCCCcC
Confidence 7999886 899999999999854
No 23
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=98.83 E-value=7.5e-10 Score=97.13 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=45.2
Q ss_pred CCeEEEecccCC--chhhccCccccCcEEEeeccC----cccc-CCCccccCCCccceeeeeccccCcccccccccCCCc
Q psy13938 163 ADFLIAYSTVED--SLLACRGTKLDGGVRLVSRAN----TETD-AGVNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNP 235 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~----~e~d-~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~ 235 (245)
++-+-+++..|. |+|||||.+.+.|+.+.+... .+.+ .......||++||||++|||+ |||
T Consensus 126 ~~~CpsL~gKPKlffiQACRG~~~~~gv~~~~~~~~~~~~e~d~~~~~~~~iP~~aD~Li~yST~------------pG~ 193 (271)
T 3h11_B 126 GLKCPSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDEADFLLGMATV------------NNC 193 (271)
T ss_dssp TTTCGGGTTSCEEEEEESCCSSBCC----------------------CCCCSCSSSSEEEEESSC------------TTB
T ss_pred hccChhhcCCccEEEEeccCCCcccCCceeccCCccccccccccccccccccCCCCceEEEEECC------------CCc
Confidence 344445566676 899999999999886533221 1222 112345699999999999999 999
Q ss_pred cccccCCCCC
Q psy13938 236 LSSRVTDNGE 245 (245)
Q Consensus 236 ~s~r~~~~g~ 245 (245)
+|||++.+||
T Consensus 194 vs~R~~~~GS 203 (271)
T 3h11_B 194 VSYRNPAEGT 203 (271)
T ss_dssp CCEEETTTEE
T ss_pred eeecCCCCCc
Confidence 9999999986
No 24
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=98.79 E-value=1.1e-10 Score=88.37 Aligned_cols=78 Identities=13% Similarity=0.259 Sum_probs=47.4
Q ss_pred CCcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-C---ccccC---------CC---ccc-cCCCccceee
Q psy13938 155 NAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-N---TETDA---------GV---NAY-KIPSYADFLI 215 (245)
Q Consensus 155 ~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~---~e~d~---------~~---~~~-~iP~~aDfL~ 215 (245)
+...+|.++|||++|||+|||+|||+..+ |+|.+. +.. . ...|. .+ ... .-|. .+-.-
T Consensus 7 ~~~~iP~~aDfL~~yST~pG~~S~R~~~~--GSwFIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~~-~~~~k 83 (105)
T 1pyo_B 7 PKMRLPTRSDMICGYACLKGTAAMRNTKR--GSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPGTE-FHRCK 83 (105)
T ss_dssp CCCEECSSCSEEEEESSCTTBCCEEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHTCCCCCTTST-TTTCB
T ss_pred cccCcCCCCCEEEEEeCCCCcEEEecCCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhccCCCcc-ccCce
Confidence 35679999999999999999999987643 455431 110 0 00000 00 000 0011 12234
Q ss_pred eeccccCcccccccccCCCcc
Q psy13938 216 AYSTVEDCKLCLYPFIFPNPL 236 (245)
Q Consensus 216 ~~sTve~~tl~~~~~~~pg~~ 236 (245)
||+.+ .++|+|+|||+||+.
T Consensus 84 Q~P~~-~stLtK~lyf~pg~~ 103 (105)
T 1pyo_B 84 EMSEY-CSTLCRHLYLFPGHP 103 (105)
T ss_dssp CCCEE-EECCCSBCCCCTTCC
T ss_pred ECCEe-EEeeceeEEeCCCCC
Confidence 66654 789999999999974
No 25
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=98.76 E-value=2.5e-09 Score=93.25 Aligned_cols=70 Identities=46% Similarity=0.650 Sum_probs=46.2
Q ss_pred CCeEEEecccCC--chhhccCccccCcEEEeeccCccccCC-CccccCCCccceeeeeccccCcccccccccCCCccccc
Q psy13938 163 ADFLIAYSTVED--SLLACRGTKLDGGVRLVSRANTETDAG-VNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSR 239 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~~e~d~~-~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r 239 (245)
++-+-.++..|. |+|||||..++.|+..... ..+.+.. ...+++|+.+|||++|||+ |||+|||
T Consensus 120 ~~~cpsL~gKPKlf~iQACRG~~~~~g~~~~~~-~~~~dg~~~~~~~ip~~aD~Li~yST~------------pG~vs~r 186 (259)
T 3sir_A 120 ANHCPSLAGKPKLFFIQACQGDRLDGGVTMQRS-QTETDGDSSMSYKIPVHADFLIAYSTV------------PGFYSWR 186 (259)
T ss_dssp TTTCGGGSSSCEEEEEEEETTSCEEC------------------CEECCCCTTEEEEEEEE------------CCSCCCS
T ss_pred hccCccccCCCCEEEEecCCCCcccCCcccccC-cccccCcccccccCCCCCCEEEEEECC------------CCeEeec
Confidence 344445556676 8999999999988764321 1122221 2457899999999999999 9999999
Q ss_pred cCCCCC
Q psy13938 240 VTDNGE 245 (245)
Q Consensus 240 ~~~~g~ 245 (245)
++.+||
T Consensus 187 ~~~~GS 192 (259)
T 3sir_A 187 NTTRGS 192 (259)
T ss_dssp SCCCSC
T ss_pred CCCCCc
Confidence 999997
No 26
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=98.74 E-value=4e-10 Score=83.81 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=47.2
Q ss_pred CcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-Cc---cc-cCCCcc----ccC---CCccceeeeecccc
Q psy13938 156 AYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-NT---ET-DAGVNA----YKI---PSYADFLIAYSTVE 221 (245)
Q Consensus 156 ~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~~---e~-d~~~~~----~~i---P~~aDfL~~~sTve 221 (245)
..++|.++|||++|||+|||+|||+..+ |+|.+. +.. .. .. |..... .++ -...+-.-||+.+.
T Consensus 6 ~~~iP~~aDfL~~ysT~pG~~S~R~~~~--GSwfIq~Lc~~l~~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~kQ~P~~~ 83 (95)
T 1qtn_B 6 TRYIPDEADFLLGMATVNNCVSYRNPAE--GTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDKKNMGKQMPQPT 83 (95)
T ss_dssp CCCCCTTCSEEEEESSCTTBCCEEETTT--EEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHCCBTTTTBBCCCEEE
T ss_pred ccccCCCCCEEEEEeCCCCcEEEecCCC--CcHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHhhccCCCceEeeeeE
Confidence 5679999999999999999999987643 455431 110 00 00 100000 000 00013456888775
Q ss_pred CcccccccccCCC
Q psy13938 222 DCKLCLYPFIFPN 234 (245)
Q Consensus 222 ~~tl~~~~~~~pg 234 (245)
+||+|+|||+||
T Consensus 84 -stLtK~lyf~p~ 95 (95)
T 1qtn_B 84 -FTLRKKLVFPSD 95 (95)
T ss_dssp -ECCCSBCCCCCC
T ss_pred -EEEcceEeCCCC
Confidence 899999999997
No 27
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=98.72 E-value=2.2e-09 Score=94.13 Aligned_cols=68 Identities=47% Similarity=0.704 Sum_probs=48.8
Q ss_pred CCeEEEecccCC--chhhccCccccCcEEEeeccCccccCC-CccccCCCccceeeeeccccCcccccccccCCCccccc
Q psy13938 163 ADFLIAYSTVED--SLLACRGTKLDGGVRLVSRANTETDAG-VNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSR 239 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~~e~d~~-~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r 239 (245)
++-+-..+..|. |+|||||..++.|+.+. . .++|.. ...+.+|+.+|||++|||+ |||+|||
T Consensus 132 ~~~cpsL~gKPKlffiqACRg~~~~~g~~~~-~--~~~d~~~~~~~~iP~~aD~Li~ysT~------------pG~vs~r 196 (272)
T 1m72_A 132 ADKCPTLAGKPKLFFIQACQGDRLDGGITLS-R--TETDGSPSTSYRIPVHADFLIAFSTV------------PGYFSWR 196 (272)
T ss_dssp TTTCGGGTTSCEEEEEESCSSSBCBCCEEEE-C-----------CEEECTTCSEEEEESSC------------TTBCCEE
T ss_pred cccChhhcCCceEEEEeCCCCCcccCCcccc-c--cccccccccccccCCCCCEEEEEeCC------------CCcEeec
Confidence 344444555666 89999999999997642 1 122222 1346899999999999999 9999999
Q ss_pred cCCCCC
Q psy13938 240 VTDNGE 245 (245)
Q Consensus 240 ~~~~g~ 245 (245)
++.+||
T Consensus 197 ~~~~GS 202 (272)
T 1m72_A 197 NTTRGS 202 (272)
T ss_dssp ETTTEE
T ss_pred CCCCCC
Confidence 999886
No 28
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.2e-07 Score=84.03 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=67.2
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHh-CCcE---EEEEeC--------CCHHHHHHHHHHHhhhcCCC
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYA-LGFE---VSVYTN--------PEFREITEILSNLSQEDHSD 89 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~-LgF~---V~~~~n--------lt~~em~~~l~~~~~~~~~~ 89 (245)
.++.+||+|.+..|. ...+..|+.+|++.|+++|++ +||. |.+..| .|.+.|.+.|+.+.+. ...
T Consensus 51 ~grr~ALlIGIn~Y~--~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~-a~p 127 (350)
T 4f6o_A 51 TGRRKALIIGINYIG--SKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKD-AQP 127 (350)
T ss_dssp CSCEEEEEEECCCTT--STTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTT-CCT
T ss_pred CCCEEEEEEEeCCCC--CCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHh-CCC
Confidence 577899999997775 567889999999999999997 6995 555555 8999999999998865 356
Q ss_pred CceEEEEeccCCcc
Q psy13938 90 ADCLVITVLTHGLG 103 (245)
Q Consensus 90 ~d~~vv~ilSHG~~ 103 (245)
.|.++++|.+||.+
T Consensus 128 gD~llfYFSGHG~q 141 (350)
T 4f6o_A 128 NDSLFLHYSGHGGQ 141 (350)
T ss_dssp TCEEEEEEESCEEE
T ss_pred CCEEEEEEcCCcee
Confidence 79999999999976
No 29
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=98.71 E-value=1.3e-09 Score=95.99 Aligned_cols=71 Identities=30% Similarity=0.388 Sum_probs=48.7
Q ss_pred CCeEEEecccCC--chhhccCccccCcEEEeecc--------Ccccc-CCCccccCCCccceeeeeccccCccccccccc
Q psy13938 163 ADFLIAYSTVED--SLLACRGTKLDGGVRLVSRA--------NTETD-AGVNAYKIPSYADFLIAYSTVEDCKLCLYPFI 231 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~--------~~e~d-~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~ 231 (245)
++-+-.++..|. |+|||||...+.|+...... ..+.+ .....+++|+++|||++|||+
T Consensus 122 ~~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~iP~~aD~Li~yST~----------- 190 (278)
T 3od5_A 122 GDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVA----------- 190 (278)
T ss_dssp TTTCGGGTTSCEEEEEESCCSSBCBCEECCC---------------------CCCEETTTTEEEEESSC-----------
T ss_pred cccChhhcCCCcEEEEecCCCCcccCCeecccccccccccccccccccccccccccCCCCCeEEEEeCC-----------
Confidence 444445556676 89999999999887532110 01111 112446899999999999999
Q ss_pred CCCccccccCCCCC
Q psy13938 232 FPNPLSSRVTDNGE 245 (245)
Q Consensus 232 ~pg~~s~r~~~~g~ 245 (245)
|||+|||++.+||
T Consensus 191 -pG~vs~R~~~~GS 203 (278)
T 3od5_A 191 -EGYYSHRETVNGS 203 (278)
T ss_dssp -TTBCCEEETTTEE
T ss_pred -CCeEEecCCCCCc
Confidence 9999999999986
No 30
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=98.69 E-value=2.7e-09 Score=93.76 Aligned_cols=72 Identities=26% Similarity=0.375 Sum_probs=40.7
Q ss_pred CCCeEEEecccCC--chhhccCccccCcEEEeecc--------CccccCC------------CccccCCCccceeeeecc
Q psy13938 162 YADFLIAYSTVED--SLLACRGTKLDGGVRLVSRA--------NTETDAG------------VNAYKIPSYADFLIAYST 219 (245)
Q Consensus 162 ~~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~--------~~e~d~~------------~~~~~iP~~aDfL~~~sT 219 (245)
.++-+-.++..|. |+|||||..++.|+...... ..+.+.. ....++|+.+|||++|||
T Consensus 129 ~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~aD~Li~ysT 208 (277)
T 1nw9_B 129 NGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYST 208 (277)
T ss_dssp CTTTCGGGTTSCEEEEEEEEC---------------------------CBCCC------------CCCCCSCSEEEEEEC
T ss_pred cccCChhHcCCCcEEEEeccCCCcccCCceeccCCcccccccccccccccccccccccccccccccccCCCCCEEEEEcC
Confidence 3444445566677 89999999999887543211 0011110 124579999999999999
Q ss_pred ccCcccccccccCCCccccccCCCCC
Q psy13938 220 VEDCKLCLYPFIFPNPLSSRVTDNGE 245 (245)
Q Consensus 220 ve~~tl~~~~~~~pg~~s~r~~~~g~ 245 (245)
+ |||+|||++.+||
T Consensus 209 ~------------pG~vs~R~~~~GS 222 (277)
T 1nw9_B 209 F------------PGFVSWRDPKSGS 222 (277)
T ss_dssp C------------CCBSSTTCTTSCB
T ss_pred C------------CCeEEEcCCCCCc
Confidence 9 9999999999997
No 31
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=98.69 E-value=3e-10 Score=87.70 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-C---ccccC---------CCc-ccc-C--CCccceee
Q psy13938 155 NAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-N---TETDA---------GVN-AYK-I--PSYADFLI 215 (245)
Q Consensus 155 ~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~---~e~d~---------~~~-~~~-i--P~~aDfL~ 215 (245)
+..++|.++|||++|||+|||+|||+..+ |+|.|. +.. . ...+. .+. .+. . ....+-.-
T Consensus 8 ~~~~iP~~aDfLi~yST~pG~vS~R~~~~--GSwFIQ~Lc~vl~~~~~~~dl~~ilT~Vn~~Va~~~es~~~~~~~~~~K 85 (118)
T 2xzd_B 8 ACHKIPVEADFLYAYSTAPGYYSWRNSKD--GSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKK 85 (118)
T ss_dssp -CCEECTTTTEEEEESSCTTBCCCEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSSGGGTTCB
T ss_pred cccccCCCCCEEEEEeCCCCCEeeEeCCC--CCccHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhccccCCCccCCce
Confidence 35679999999999999999999987543 455431 111 0 00010 000 000 0 01113456
Q ss_pred eeccccCcccccccccCCCccc
Q psy13938 216 AYSTVEDCKLCLYPFIFPNPLS 237 (245)
Q Consensus 216 ~~sTve~~tl~~~~~~~pg~~s 237 (245)
||+.+. ++|+|+|||+||+.+
T Consensus 86 Q~P~~~-stLtK~lyf~p~~~~ 106 (118)
T 2xzd_B 86 QIPCIV-SMLTKELYFYHALEV 106 (118)
T ss_dssp CCCEEE-ECCSSBCCTTC----
T ss_pred EeeeeE-EEeceEEEeCCCCcc
Confidence 888775 899999999999654
No 32
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=98.68 E-value=3.6e-07 Score=83.12 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=67.0
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEE---EEEe----------CCCHHHHHHHHHHHhhhcC
Q psy13938 21 HPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEV---SVYT----------NPEFREITEILSNLSQEDH 87 (245)
Q Consensus 21 ~~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V---~~~~----------nlt~~em~~~l~~~~~~~~ 87 (245)
...+.+||+|.+.+|. ...+..|+.+|++.|+++|+++||.+ .+.. +.|.+.|.+.|+.+.+. .
T Consensus 89 ~~grr~ALlIGIn~Y~--~~~~L~g~vnDA~~m~~~L~~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~-a 165 (367)
T 4af8_A 89 PGQTVRALFIGINYYG--TSAALSGCCNDVKQMLATLQKRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKD-A 165 (367)
T ss_dssp TTCCEEEEEEECCCTT--STTCCSSHHHHHHHHHHHHHHTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHT-C
T ss_pred CCCCeEEEEEEeCCCC--CccCCCCHHHHHHHHHHHHHHcCCCchheEEecccccccccccCCCHHHHHHHHHHHHHh-C
Confidence 3567899999998886 45678899999999999999999963 3333 58999999999998865 3
Q ss_pred CCCceEEEEeccCCcc
Q psy13938 88 SDADCLVITVLTHGLG 103 (245)
Q Consensus 88 ~~~d~~vv~ilSHG~~ 103 (245)
...|.++++|.+||.+
T Consensus 166 ~pgD~l~fyFSGHG~q 181 (367)
T 4af8_A 166 KPGDVLFFHYSGHGTQ 181 (367)
T ss_dssp CTTCEEEEEEESCEEE
T ss_pred CCCCEEEEEEcCCcCc
Confidence 5679999999999975
No 33
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=98.68 E-value=1.7e-09 Score=96.88 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=39.5
Q ss_pred CCCeEEEecccCC--chhhccCccccCcEEEeeccC--------c-------cccCCCccccCCCccceeeeeccccCcc
Q psy13938 162 YADFLIAYSTVED--SLLACRGTKLDGGVRLVSRAN--------T-------ETDAGVNAYKIPSYADFLIAYSTVEDCK 224 (245)
Q Consensus 162 ~~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~--------~-------e~d~~~~~~~iP~~aDfL~~~sTve~~t 224 (245)
.++-+-.++..|. |+|||||..++.|+.+..... . +.+.......||+.+|||++|||+
T Consensus 165 ~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~iP~~aD~Li~yST~---- 240 (316)
T 2fp3_A 165 QTAKCPYLVNKPKVLMFPFARGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQTEGIPSPSTNVPSLADTLVCYANT---- 240 (316)
T ss_dssp STTTCGGGTTSCEEEEESCC---------------------------------------CCCCCCCCSEEEEECCC----
T ss_pred ccccChhhcCCceEEEEecCCCCcccCCceeccCcccccccccccccccccccccccccccccCCCCCEEEEEeCC----
Confidence 3444445556676 899999999998876432110 0 011113356799999999999999
Q ss_pred cccccccCCCccccccCCCCC
Q psy13938 225 LCLYPFIFPNPLSSRVTDNGE 245 (245)
Q Consensus 225 l~~~~~~~pg~~s~r~~~~g~ 245 (245)
|||+|||++.+||
T Consensus 241 --------pG~vS~R~~~~GS 253 (316)
T 2fp3_A 241 --------PGYVTHRDLDTGS 253 (316)
T ss_dssp --------SCCCBTTTBCHHH
T ss_pred --------CCceeccCCCCCC
Confidence 9999999998875
No 34
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=98.67 E-value=2.3e-09 Score=94.36 Aligned_cols=67 Identities=36% Similarity=0.472 Sum_probs=47.7
Q ss_pred CCeEEEecccCC--chhhccCccccCcEEEeeccCccccCCCccccCCCccceeeeeccccCcccccccccCCCcccccc
Q psy13938 163 ADFLIAYSTVED--SLLACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRV 240 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~~e~d~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~ 240 (245)
++-+-.++..|. |+|||||..++.|+...+.. + ......++|+.+|||++|||+ |||+|||+
T Consensus 145 ~~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~--~--~~~~~~~ip~~aD~Li~yST~------------pG~vs~r~ 208 (277)
T 4ehd_A 145 GDRCRSLTGKPKLFIIQACRGTELDCGIETDSGV--D--DDMACHKIPVEADFLYACSTA------------PGYYSWRN 208 (277)
T ss_dssp TTTCGGGTTSCEEEEEESCCSSBCBCCCCC--------------CCCCTTTTEEEEESSC------------TTBCCEEE
T ss_pred hccCchhcCCccEEEEecCCCCcccCCccccCCc--c--ccccccccCCCCCEEEEEECC------------CCeEeecC
Confidence 344444555666 89999999999887542211 1 112347899999999999999 99999999
Q ss_pred CCCCC
Q psy13938 241 TDNGE 245 (245)
Q Consensus 241 ~~~g~ 245 (245)
+.+||
T Consensus 209 ~~~GS 213 (277)
T 4ehd_A 209 SKDGS 213 (277)
T ss_dssp TTTEE
T ss_pred CCCCc
Confidence 99886
No 35
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=98.63 E-value=3.3e-09 Score=93.11 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=40.2
Q ss_pred CCeEEEecccCC--chhhccCc--cccCcEEEeeccCc--ccc---CCCccccCCCccceeeeeccccCcccccccccCC
Q psy13938 163 ADFLIAYSTVED--SLLACRGT--KLDGGVRLVSRANT--ETD---AGVNAYKIPSYADFLIAYSTVEDCKLCLYPFIFP 233 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~--~~d~gv~l~~~~~~--e~d---~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~p 233 (245)
++-+-+++..|. |+|||||. ..+.|+.+..+... ..+ .....++||++||||++|||+ |
T Consensus 134 ~~~CpsL~gKPKlffiQACRG~~~~~~~g~~~~~D~~~~~~~~~~~~~~~~~~iP~~aDfL~~yST~------------p 201 (272)
T 3h11_A 134 GDSCPYLAGKPKMFFIQNYVVSEGQLENSSLLEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTA------------D 201 (272)
T ss_dssp TTTCGGGTTSCEEEEEEEEEC--------------------------------CCTTCSEEEEEEEE------------E
T ss_pred cccChhhcCCCcEEEEECCCCCCcccCCCcceeccCcccccccccccccccccCCCCCCEEEEEecc------------C
Confidence 445555666677 89999986 34445322221110 111 112457899999999999999 9
Q ss_pred CccccccCCCCC
Q psy13938 234 NPLSSRVTDNGE 245 (245)
Q Consensus 234 g~~s~r~~~~g~ 245 (245)
||+|||++.+||
T Consensus 202 g~~s~R~~~~GS 213 (272)
T 3h11_A 202 MSLLEQSHSSPS 213 (272)
T ss_dssp GGGTSSTTCCCC
T ss_pred CeEEEEeCCCCC
Confidence 999999999997
No 36
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=98.61 E-value=7.7e-10 Score=82.53 Aligned_cols=75 Identities=23% Similarity=0.159 Sum_probs=45.0
Q ss_pred CcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-C---ccccC---------CC----ccccCCCccceeee
Q psy13938 156 AYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-N---TETDA---------GV----NAYKIPSYADFLIA 216 (245)
Q Consensus 156 ~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~---~e~d~---------~~----~~~~iP~~aDfL~~ 216 (245)
..++|.++|||++|||+|||+|||+..+ |+|.+. +.. . ...|. .+ ....-....+-.-|
T Consensus 4 ~~~iP~~aDfL~~yST~pG~~S~R~~~~--GSwfIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~~~~~~~kQ 81 (97)
T 2ql9_B 4 RYKIPVEADFLFAYSTVPGYYSWRSPGR--GSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQ 81 (97)
T ss_dssp --CBCTTTTEEEEESSCTTBCCEEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSSGGGTTCBC
T ss_pred CcccCCCCCEEEEEeCCCCcEeeecCCC--CCeeHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhccccCCcccCCceE
Confidence 4679999999999999999999987543 455431 110 0 00010 00 00000011134568
Q ss_pred eccccCcccccccccCC
Q psy13938 217 YSTVEDCKLCLYPFIFP 233 (245)
Q Consensus 217 ~sTve~~tl~~~~~~~p 233 (245)
|+.+. ++|+|+|||+|
T Consensus 82 ~P~~~-stLtk~lyf~p 97 (97)
T 2ql9_B 82 IPCVV-SMLTKELYFSQ 97 (97)
T ss_dssp CCEEE-ECCSSBCCSCC
T ss_pred eeeeE-EEEceeEEcCC
Confidence 88775 89999999987
No 37
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=98.60 E-value=3.2e-09 Score=92.06 Aligned_cols=67 Identities=37% Similarity=0.508 Sum_probs=47.0
Q ss_pred CCeEEEecccCC--chhhccCccccCcEEEeeccCccccCCCccccCCCccceeeeeccccCcccccccccCCCcccccc
Q psy13938 163 ADFLIAYSTVED--SLLACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRV 240 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~~e~d~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~ 240 (245)
++-+-..+..|. ++|||||..++.|+...+.. + .......+|+.+|||++|||+ |||+|||+
T Consensus 117 ~~~cp~L~gKPKlf~iqACRg~~~~~g~~~~~~~--~--~~~~~~~ip~~aD~Li~ysT~------------pG~vs~r~ 180 (250)
T 2j32_A 117 GDRCRSLTGKPKLFIIQACRGTELDCGIATDSGV--D--DDMACHKIPVEADFLYAYSTA------------PGYYSWRN 180 (250)
T ss_dssp TTTCGGGTTSCEEEEEESCSEEECBCCCCC--------------CCCCTTTTEEEEESSC------------TEECCEEE
T ss_pred cccChhHcCCCeEEEEecccCCcccCCccccCCc--c--ccccccccCCCCCEEEEEeCC------------CccEEecC
Confidence 333444555666 88999999998886432110 0 111246799999999999999 99999999
Q ss_pred CCCCC
Q psy13938 241 TDNGE 245 (245)
Q Consensus 241 ~~~g~ 245 (245)
+.+||
T Consensus 181 ~~~gS 185 (250)
T 2j32_A 181 SKDGS 185 (250)
T ss_dssp TTTEE
T ss_pred CCCCc
Confidence 99886
No 38
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=98.59 E-value=8.7e-09 Score=91.96 Aligned_cols=67 Identities=46% Similarity=0.702 Sum_probs=46.3
Q ss_pred CeEEEecccCC--chhhccCccccCcEEEeeccCccccCC-CccccCCCccceeeeeccccCcccccccccCCCcccccc
Q psy13938 164 DFLIAYSTVED--SLLACRGTKLDGGVRLVSRANTETDAG-VNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRV 240 (245)
Q Consensus 164 D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~~e~d~~-~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~ 240 (245)
+-+-.++..|. |+|||||..++.|+.+. . .++|.. ...+.+|+.+|||++|||+ |||+|||+
T Consensus 161 ~~CpsL~gKPKlffiQACRG~~~d~g~~~~-~--~~~d~~~~~~~~iP~~aD~LiayST~------------pG~vS~R~ 225 (310)
T 2nn3_C 161 DKCPTLAGKPKLFFIQACQGDRLDGGITLS-R--TETDGSPSTSYRIPVHADFLIAFSTV------------PGYFSWRN 225 (310)
T ss_dssp TTCGGGTTSCEEEEEEEECCCCCCCCC----------------CCCCCCSTTEEEEECCC------------CCEEESSS
T ss_pred ccChhhcCCceEEEEecccCCccccCcccc-c--cccccccccccccCCCCCEEEEEeCC------------CCceeecC
Confidence 33334455666 89999999999887532 0 122221 1346899999999999999 99999999
Q ss_pred CCCCC
Q psy13938 241 TDNGE 245 (245)
Q Consensus 241 ~~~g~ 245 (245)
+.+||
T Consensus 226 ~~~GS 230 (310)
T 2nn3_C 226 TTRGS 230 (310)
T ss_dssp SEEEE
T ss_pred CCCCC
Confidence 98886
No 39
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=98.58 E-value=1.4e-09 Score=81.98 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=46.8
Q ss_pred CCcCCCCCCCeEEEecccCCchhhccCccccCcEEEe--ecc-C---ccccC---------CCc-ccc-CC--Cccceee
Q psy13938 155 NAYKIPSYADFLIAYSTVEDSLLACRGTKLDGGVRLV--SRA-N---TETDA---------GVN-AYK-IP--SYADFLI 215 (245)
Q Consensus 155 ~~~~ip~~~D~li~ysT~pg~~~~~~g~~~d~gv~l~--~~~-~---~e~d~---------~~~-~~~-iP--~~aDfL~ 215 (245)
...++|.++|||++|||+|||+|||+..+ |+|.+. +.. . ...+. .+. .+. .+ ...+-.-
T Consensus 9 ~~~~iP~~aDfL~~yST~pG~vS~R~~~~--GSwfIq~Lc~~l~~~~~~~dl~~ilT~Vn~~V~~~~~~~~~~~~~~~~k 86 (103)
T 2dko_B 9 ACHKIPVEADFLYAYSTAPGYYSWRNSKD--GSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKK 86 (103)
T ss_dssp SSCCCCTTTTEEEEESSCTTBCCEEETTT--EEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSSGGGTTCB
T ss_pred cccccCCCCCEEEEEeCCCCcEeEEcCCC--CCeeHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhcccCCCCccCCce
Confidence 46789999999999999999999987543 455431 110 0 00010 000 000 01 1113456
Q ss_pred eeccccCcccccccccCC
Q psy13938 216 AYSTVEDCKLCLYPFIFP 233 (245)
Q Consensus 216 ~~sTve~~tl~~~~~~~p 233 (245)
||+.+. ++|+|+|||+|
T Consensus 87 Q~P~~~-stLtK~lyf~p 103 (103)
T 2dko_B 87 QIPCIV-SMLTKELYFYH 103 (103)
T ss_dssp CCCEEE-ECCSSBCCSCC
T ss_pred EeeeeE-EEEceeEEeCC
Confidence 888775 89999999997
No 40
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=98.58 E-value=1.4e-08 Score=74.40 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=27.6
Q ss_pred ccCCCccceeeeeccccCcccccccccCCCccccccCCCCC
Q psy13938 205 YKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRVTDNGE 245 (245)
Q Consensus 205 ~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~~~~g~ 245 (245)
++||++||||++|||+ |||+||||+.+||
T Consensus 3 ~~ip~~aDfL~~yST~------------pG~~S~R~~~~GS 31 (88)
T 1sc3_B 3 KKAHIEKDFIAFCSST------------PDNVSWRHPTMGS 31 (88)
T ss_dssp CCCCSSCSEEEEESSC------------TTBCCCEETTTEE
T ss_pred cccCCCCCEEEEEeCC------------CCCEeeEcCCCCC
Confidence 5799999999999999 9999999999997
No 41
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=98.57 E-value=7.5e-09 Score=92.18 Aligned_cols=69 Identities=42% Similarity=0.552 Sum_probs=45.4
Q ss_pred CeEEEecccCC--chhhccCccccCcEEEeeccCccccCCCccccCCCccceeeeeccccCcccccccccCCCccccccC
Q psy13938 164 DFLIAYSTVED--SLLACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRVT 241 (245)
Q Consensus 164 D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~~~e~d~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~~ 241 (245)
+-+-.++..|. |+|||||..++.|+........+.+ ......+|+.+|||++|||+ |||+|||++
T Consensus 171 ~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~~~~~~-~~~~~~ip~~aD~LiayST~------------pG~vs~r~~ 237 (305)
T 1f1j_A 171 DRSKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTD-ANPRYKIPVEADFLFAYSTV------------PGYYSWRSP 237 (305)
T ss_dssp TTCGGGTTSCEEEEEESCCSSBCBCCBC----------------CBCTTTTEEEEESSC------------TTBCCEEET
T ss_pred ccChhhcCCceEEEeccccCCcccCCccccCCcccccc-cccccccCCCCCEEEEEECC------------CCeeccCCC
Confidence 33334445566 8899999999988754221111111 12246899999999999999 999999999
Q ss_pred CCCC
Q psy13938 242 DNGE 245 (245)
Q Consensus 242 ~~g~ 245 (245)
.+||
T Consensus 238 ~~GS 241 (305)
T 1f1j_A 238 GRGS 241 (305)
T ss_dssp TTEE
T ss_pred CCCC
Confidence 8886
No 42
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=98.52 E-value=2.4e-08 Score=88.78 Aligned_cols=71 Identities=18% Similarity=0.069 Sum_probs=47.3
Q ss_pred CCeEEEecccCC--chhhccCccccCcEEEeecc-------Ccccc-CCCccccCCCccceeeeeccccCcccccccccC
Q psy13938 163 ADFLIAYSTVED--SLLACRGTKLDGGVRLVSRA-------NTETD-AGVNAYKIPSYADFLIAYSTVEDCKLCLYPFIF 232 (245)
Q Consensus 163 ~D~li~ysT~pg--~~~~~~g~~~d~gv~l~~~~-------~~e~d-~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~ 232 (245)
++-+-+++..|. |+|||||...+.++...+.. ..... ......++|+++|||++|||+
T Consensus 165 ~~~CpsL~gKPKlffIQACRG~~~~~~~~~ds~~~~~~~~~~~~~~~~~d~~~~ip~~aDfLi~yST~------------ 232 (302)
T 3e4c_A 165 TKNCPSLKDKPKVIIIQAARGDSPGVVWFKDSVGVSGNLSLPTTEEFEDDAIKKAHIEKDFIAFCSST------------ 232 (302)
T ss_dssp TTTCGGGTTSCEEEEEEEECSSSCCCCCCCCC--------CCCCCCCCCHHHHTSCSSCSEEEEEECC------------
T ss_pred hhcchhhcCCccEEEEECCCCCCCCcceeccCcccccccccccccccccccccccCCCCCEEEEEeCC------------
Confidence 344445556676 89999999876443211000 00000 111235799999999999999
Q ss_pred CCccccccCCCCC
Q psy13938 233 PNPLSSRVTDNGE 245 (245)
Q Consensus 233 pg~~s~r~~~~g~ 245 (245)
|||+|||++.+||
T Consensus 233 pG~vS~R~~~~GS 245 (302)
T 3e4c_A 233 PDNVSWRHPTMGS 245 (302)
T ss_dssp CCCCCSSSTTCCC
T ss_pred CCceeecCCCCCc
Confidence 9999999999997
No 43
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=98.48 E-value=3.5e-08 Score=73.24 Aligned_cols=30 Identities=40% Similarity=0.511 Sum_probs=28.3
Q ss_pred cccCCCccceeeeeccccCcccccccccCCCccccccCCCCC
Q psy13938 204 AYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRVTDNGE 245 (245)
Q Consensus 204 ~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~~~~g~ 245 (245)
.++||++||||++|||+ |||+||||+.+||
T Consensus 6 ~~~iP~~aDfL~~ysT~------------pG~~S~R~~~~GS 35 (95)
T 1qtn_B 6 TRYIPDEADFLLGMATV------------NNCVSYRNPAEGT 35 (95)
T ss_dssp CCCCCTTCSEEEEESSC------------TTBCCEEETTTEE
T ss_pred ccccCCCCCEEEEEeCC------------CCcEEEecCCCCc
Confidence 46899999999999999 9999999999996
No 44
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=98.48 E-value=3.3e-08 Score=74.69 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=28.8
Q ss_pred ccccCCCccceeeeeccccCcccccccccCCCccccccCCCCC
Q psy13938 203 NAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRVTDNGE 245 (245)
Q Consensus 203 ~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~~~~g~ 245 (245)
..++||++||||++|||+ |||+|||++.+||
T Consensus 7 ~~~~iP~~aDfL~~yST~------------pG~~S~R~~~~GS 37 (105)
T 1pyo_B 7 PKMRLPTRSDMICGYACL------------KGTAAMRNTKRGS 37 (105)
T ss_dssp CCCEECSSCSEEEEESSC------------TTBCCEEETTTEE
T ss_pred cccCcCCCCCEEEEEeCC------------CCcEEEecCCCCC
Confidence 456899999999999999 9999999999996
No 45
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=98.48 E-value=3.4e-08 Score=73.55 Aligned_cols=30 Identities=57% Similarity=0.783 Sum_probs=27.1
Q ss_pred cccCCCccceeeeeccccCcccccccccCCCccccccCCCCC
Q psy13938 204 AYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRVTDNGE 245 (245)
Q Consensus 204 ~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~~~~g~ 245 (245)
.++||++||||++|||+ |||+|||++.+||
T Consensus 4 ~~~iP~~aDfL~~yST~------------pG~~S~R~~~~GS 33 (97)
T 2ql9_B 4 RYKIPVEADFLFAYSTV------------PGYYSWRSPGRGS 33 (97)
T ss_dssp --CBCTTTTEEEEESSC------------TTBCCEEETTTEE
T ss_pred CcccCCCCCEEEEEeCC------------CCcEeeecCCCCC
Confidence 46899999999999999 9999999999996
No 46
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=98.47 E-value=4.9e-08 Score=73.48 Aligned_cols=31 Identities=48% Similarity=0.633 Sum_probs=28.9
Q ss_pred ccccCCCccceeeeeccccCcccccccccCCCccccccCCCCC
Q psy13938 203 NAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRVTDNGE 245 (245)
Q Consensus 203 ~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~~~~g~ 245 (245)
..++||++||||++|||+ |||+|||++.+||
T Consensus 9 ~~~~iP~~aDfL~~yST~------------pG~vS~R~~~~GS 39 (103)
T 2dko_B 9 ACHKIPVEADFLYAYSTA------------PGYYSWRNSKDGS 39 (103)
T ss_dssp SSCCCCTTTTEEEEESSC------------TTBCCEEETTTEE
T ss_pred cccccCCCCCEEEEEeCC------------CCcEeEEcCCCCC
Confidence 457899999999999999 9999999999996
No 47
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=96.21 E-value=0.0026 Score=58.12 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.6
Q ss_pred chhhccCc-cccCcEEEeeccCccccCCCccccCCCccceeeeeccccCcccccccccCCCccccccC---CCCC
Q psy13938 175 SLLACRGT-KLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDCKLCLYPFIFPNPLSSRVT---DNGE 245 (245)
Q Consensus 175 ~~~~~~g~-~~d~gv~l~~~~~~e~d~~~~~~~iP~~aDfL~~~sTve~~tl~~~~~~~pg~~s~r~~---~~g~ 245 (245)
++++|||. .++.+. .....+|..+|++++|||+ |||+|||++ .+||
T Consensus 123 ILDACrg~~~~~~~~-------------~~~~~ip~~ad~Li~yAT~------------pG~~A~r~~~d~~~gS 172 (390)
T 3uoa_B 123 LLDMCRKRNDYDDTI-------------PILDALKVTANIVFGYATC------------QGAEAFEIQHSGLANG 172 (390)
T ss_dssp EEESCCCCCTTCCCC-------------CCCCCCCCCSCEEEEESSC------------TTCCCEECSSCTTCCC
T ss_pred EEECCCCCCcccccc-------------cccccCcccCCcEEEEEcC------------CCcEeeecCCCCCCCC
Confidence 78899983 333221 1124688999999999999 999999986 4554
No 48
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=94.92 E-value=0.012 Score=44.90 Aligned_cols=18 Identities=17% Similarity=0.576 Sum_probs=16.5
Q ss_pred ccccCCCccceeeeeccc
Q psy13938 203 NAYKIPSYADFLIAYSTV 220 (245)
Q Consensus 203 ~~~~iP~~aDfL~~~sTv 220 (245)
..++||++||||++|||+
T Consensus 8 ~~~~iP~eADfL~~yST~ 25 (117)
T 3rjm_B 8 PKMRLPTRSDMICGYACL 25 (117)
T ss_dssp CCCCBCSSCSEEEEESSC
T ss_pred cCccCCCccCEEEEEcCC
Confidence 457899999999999999
No 49
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=94.60 E-value=0.013 Score=44.62 Aligned_cols=18 Identities=61% Similarity=0.768 Sum_probs=16.0
Q ss_pred ccccCCCccceeeeeccc
Q psy13938 203 NAYKIPSYADFLIAYSTV 220 (245)
Q Consensus 203 ~~~~iP~~aDfL~~~sTv 220 (245)
..++||++||||++|||+
T Consensus 8 ~~~~iP~~aDfLi~yST~ 25 (118)
T 2xzd_B 8 ACHKIPVEADFLYAYSTA 25 (118)
T ss_dssp -CCEECTTTTEEEEESSC
T ss_pred cccccCCCCCEEEEEeCC
Confidence 457899999999999999
No 50
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=79.83 E-value=0.14 Score=40.97 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=22.5
Q ss_pred CCCCeEEEecccCC--chhhccCccccCcEEE
Q psy13938 161 SYADFLIAYSTVED--SLLACRGTKLDGGVRL 190 (245)
Q Consensus 161 ~~~D~li~ysT~pg--~~~~~~g~~~d~gv~l 190 (245)
..++-+-.++..|. |+|||||.+.|.|+.+
T Consensus 130 F~~~~CpsL~gKPKlFfiQACRG~~~d~gv~~ 161 (164)
T 1qtn_A 130 FTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV 161 (164)
T ss_dssp GSTTTCGGGTTSCEEEEEESCSSSBCBCCCCC
T ss_pred hccccChhhcCCCeEEEEECCCCCCccCCccC
Confidence 34455555667777 8999999999999754
No 51
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=77.67 E-value=0.29 Score=38.40 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCCCeEEEecccCC--chhhccCccccCcE
Q psy13938 161 SYADFLIAYSTVED--SLLACRGTKLDGGV 188 (245)
Q Consensus 161 ~~~D~li~ysT~pg--~~~~~~g~~~d~gv 188 (245)
..++-+-.++..|. |+|||||.+.|.|+
T Consensus 115 F~~~~CpsL~gKPKlffiQACRG~~~d~gv 144 (146)
T 2dko_A 115 FRGDRCRSLTGKPKLFIIQACRGTELDCGI 144 (146)
T ss_dssp TSTTTCGGGTTSCEEEEEESCCSSBCBCCC
T ss_pred hccccChhhcCCCeEEEEECCCCCCCcCCc
Confidence 34555556667777 89999999999886
No 52
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=76.53 E-value=0.28 Score=39.36 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=21.9
Q ss_pred CCCeEEEecccCC--chhhccCccccCcEEE
Q psy13938 162 YADFLIAYSTVED--SLLACRGTKLDGGVRL 190 (245)
Q Consensus 162 ~~D~li~ysT~pg--~~~~~~g~~~d~gv~l 190 (245)
.++-+-+++..|. |+|||||.+.|.|+.+
T Consensus 135 ~~~~CpsL~gKPKlffiQACRG~~~d~Gv~~ 165 (167)
T 1pyo_A 135 DNANCPSLQNKPKMFFIQACRGDETDRGVDQ 165 (167)
T ss_dssp STTTCGGGTTSCEEEEEESCSSSBCBCCEEC
T ss_pred cccCChhHcCCCeEEEEECCCCCCCCCCccC
Confidence 3444445666777 8999999999999864
No 53
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=72.10 E-value=0.26 Score=40.10 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=12.5
Q ss_pred CCCeEEEecccCC--chhhccCccccCcEEE
Q psy13938 162 YADFLIAYSTVED--SLLACRGTKLDGGVRL 190 (245)
Q Consensus 162 ~~D~li~ysT~pg--~~~~~~g~~~d~gv~l 190 (245)
.++-+-.++..|. |+|||||.+.|.|+..
T Consensus 144 ~~~~CpsL~gKPKlFfIQACRG~~~d~Gv~~ 174 (179)
T 3p45_A 144 KGDKCHSLVGKPKIFIIQACRGNQHDVPVIP 174 (179)
T ss_dssp SGGGCGGGTTSCEEEEEECC-----------
T ss_pred ccccChhhCCCCcEEEEECCCCCCCCCCccC
Confidence 3445555666777 8999999999999864
No 54
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=70.60 E-value=0.46 Score=38.39 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=20.4
Q ss_pred CCCeEEEecccCC--chhhccCccccCcE
Q psy13938 162 YADFLIAYSTVED--SLLACRGTKLDGGV 188 (245)
Q Consensus 162 ~~D~li~ysT~pg--~~~~~~g~~~d~gv 188 (245)
.++-+-.++..|. |+|||||.+.|.|+
T Consensus 144 ~~~~CpsL~gKPKlFfIQACRG~~~d~Gv 172 (173)
T 2ql9_A 144 RGDRCKTLLEKPKLFFIQACRGTELDDGI 172 (173)
T ss_dssp STTTCGGGTTSCEEEEEESCCSSBCBCCB
T ss_pred CcccChhHcCCCeEEEEECCCCCCccCCC
Confidence 3444555666777 89999999999886
No 55
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=68.19 E-value=18 Score=30.90 Aligned_cols=78 Identities=9% Similarity=0.095 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcc--hhhhhhccccccccccCCCc
Q psy13938 46 SGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLG--EQKLWLPFTADKCRTLAGKP 123 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~--i~~I~~~f~~~~c~~L~~KP 123 (245)
+..-.+.++..|++.|.++.++.--...+..+..+++.+ .+|++++ -|++ +.++...+... ..+|
T Consensus 24 ~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~----~~d~vv~----~GGDGTl~~v~~~l~~~-----~~~~ 90 (304)
T 3s40_A 24 LHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS----KVDLIIV----FGGDGTVFECTNGLAPL-----EIRP 90 (304)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT----TCSEEEE----EECHHHHHHHHHHHTTC-----SSCC
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc----CCCEEEE----EccchHHHHHHHHHhhC-----CCCC
Confidence 344567899999999999988876666677777666642 4564433 2555 66665544321 1356
Q ss_pred eEEEEecccCccc
Q psy13938 124 KIFFIQACRGTKL 136 (245)
Q Consensus 124 Klf~iQACRG~~~ 136 (245)
.|-+|.+=.|+.+
T Consensus 91 ~l~iiP~Gt~N~~ 103 (304)
T 3s40_A 91 TLAIIPGGTCNDF 103 (304)
T ss_dssp EEEEEECSSCCHH
T ss_pred cEEEecCCcHHHH
Confidence 6777777655543
No 56
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=61.98 E-value=30 Score=24.27 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCCcEEE---EEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccC
Q psy13938 47 GADVKNLEAAFYALGFEVS---VYTNPEFREITEILSNLSQEDHSDADCLVITVLTH 100 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~---~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSH 100 (245)
++...++.+++++.|..|. -.-++|..++.++..++.+.-..+.|++.++-+.-
T Consensus 15 ~kr~~kv~k~l~~yg~rvQ~SVFe~~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~ 71 (90)
T 1zpw_X 15 DTRRVKLANLLKSYGERVQLSVFECYLDERLLEDLRRRARRLLDLGQDALRIYPVAG 71 (90)
T ss_dssp HHHHHHHHHHHHTTEEEEETTEEEEEECHHHHHHHHHHHHHHCCTTTCEEEEEECCS
T ss_pred hHHHHHHHHHHHHhCccceEeEEEEEcCHHHHHHHHHHHHHhhCCCCCEEEEEEeCC
Confidence 4778889999999997662 33478888888777777664334468887776654
No 57
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=56.52 E-value=23 Score=31.19 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCCHH------HHHHHHHHHhhh-cCCCCceEEEEeccCCcc--hhhhhh--ccccccc
Q psy13938 48 ADVKNLEAAFYALGFEVSVYTNPEFR------EITEILSNLSQE-DHSDADCLVITVLTHGLG--EQKLWL--PFTADKC 116 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~~~~nlt~~------em~~~l~~~~~~-~~~~~d~~vv~ilSHG~~--i~~I~~--~f~~~~c 116 (245)
...+.-.+.|+++||+|....+.-.. .-++...++.+. .-...++++|+.=+-|.. +..|++ -+.
T Consensus 25 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~rlLp~L~d~~~~~---- 100 (346)
T 4eys_A 25 HEVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGDDTYRLLPYLFENDQLQ---- 100 (346)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCSCGGGGHHHHHTTSHHH----
T ss_pred HHHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccCHHHHHHHhhchhhhh----
Confidence 45677788999999999998775432 223444454432 124567776665555543 455532 111
Q ss_pred cccCCCceEEE
Q psy13938 117 RTLAGKPKIFF 127 (245)
Q Consensus 117 ~~L~~KPKlf~ 127 (245)
.+-+||+|+
T Consensus 101 --~~~~~K~~i 109 (346)
T 4eys_A 101 --KVIKQKIFL 109 (346)
T ss_dssp --HHCCCCEEE
T ss_pred --HhhCCcEEE
Confidence 123489986
No 58
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=52.69 E-value=42 Score=29.15 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=44.5
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEe---CCCHHHHHHHHHHHhhh
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT---NPEFREITEILSNLSQE 85 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~---nlt~~em~~~l~~~~~~ 85 (245)
...|+|+|.-. .+.+|..=++.-.+.++++|++.+.+. +.|.+|+.+.++++-+.
T Consensus 36 ~~P~Lavilvg---------~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 93 (300)
T 4a26_A 36 RVPGLASIIVG---------QRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNND 93 (300)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred CCceEEEEEeC---------CCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45799999644 345677778899999999999987775 89999999999888653
No 59
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=51.66 E-value=28 Score=30.49 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCH------HHHHHHHHHHhhh-cCCCCceEEEEeccCCcc-hhhhhhccccccccc
Q psy13938 47 GADVKNLEAAFYALGFEVSVYTNPEF------REITEILSNLSQE-DHSDADCLVITVLTHGLG-EQKLWLPFTADKCRT 118 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~~nlt~------~em~~~l~~~~~~-~~~~~d~~vv~ilSHG~~-i~~I~~~f~~~~c~~ 118 (245)
....+...+.|+++||+|....++.. ..-++...++.+. .-...++++|+ -|+. ...|..++.- ..
T Consensus 29 ~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~---rGG~g~~rlL~~lD~---~~ 102 (331)
T 4e5s_A 29 TENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT---LGGYNSNGLLKYLDY---DL 102 (331)
T ss_dssp HHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES---CCCSCGGGGGGGCCH---HH
T ss_pred HHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc---cccccHHHHHhhcCh---hH
Confidence 45677778899999999998876533 2344555555432 11334444443 4443 4444444421 13
Q ss_pred cCCCceEEE
Q psy13938 119 LAGKPKIFF 127 (245)
Q Consensus 119 L~~KPKlf~ 127 (245)
++..||+|+
T Consensus 103 i~~~PK~~~ 111 (331)
T 4e5s_A 103 IRENPKFFC 111 (331)
T ss_dssp HHTSCCEEE
T ss_pred HHhCCeEEE
Confidence 456799986
No 60
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=51.39 E-value=56 Score=22.61 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCcEEE---EEeCCCHHHHHHHHHHHhhhcCCCCceEEEEecc
Q psy13938 48 ADVKNLEAAFYALGFEVS---VYTNPEFREITEILSNLSQEDHSDADCLVITVLT 99 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~---~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilS 99 (245)
+-..++.+++++.|..|. -.-++|..++.++..++.+.-..+.|++.++-+.
T Consensus 12 kR~~kv~k~l~~yg~rvQ~SVFeg~lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~ 66 (85)
T 2i0x_A 12 ERVNKVKKFLRMHLNWVQNSVFEGEVTLAEFERIKEGLKKIIDENSDSVIIYKLR 66 (85)
T ss_dssp SSHHHHHHHHTTTSEEEETTEEEEECCHHHHHHHHHHHHHSSCTTTCEEEEEEES
T ss_pred HHHHHHHHHHHHhCcccceeEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 456788999999998773 3458999999988888877534556888888776
No 61
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=51.03 E-value=39 Score=25.81 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=32.0
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE-eCCCHHHHHHHHHHHhh
Q psy13938 23 RRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY-TNPEFREITEILSNLSQ 84 (245)
Q Consensus 23 ~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~-~nlt~~em~~~l~~~~~ 84 (245)
+.+.+|||.| +...++.|.+.|++.|+.+..+ .+++..+-...+++|..
T Consensus 33 ~~~~~lVF~~-------------~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 33 TIGQAIIFCQ-------------TRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCSEEEEECS-------------CHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEC-------------CHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3456777655 3466777777777777776444 45677776666666654
No 62
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=50.92 E-value=74 Score=27.36 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEE
Q psy13938 46 SGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVI 95 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv 95 (245)
+..-.+.+.+.|+..|+++.+..-....+..+..++... ..+|.+++
T Consensus 40 ~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~---~~~d~vvv 86 (337)
T 2qv7_A 40 FKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMH---ENYDVLIA 86 (337)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTT---TTCSEEEE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhh---cCCCEEEE
Confidence 345567899999999999988875554455544444332 23455444
No 63
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=50.28 E-value=32 Score=26.00 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEE-eCCCHHHHHHHHHHHh
Q psy13938 47 GADVKNLEAAFYALGFEVSVY-TNPEFREITEILSNLS 83 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~-~nlt~~em~~~l~~~~ 83 (245)
...++.|.+.|+++|+.+..+ .+++..+-.+.+++|.
T Consensus 45 ~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 45 KEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 345566666666666555333 2455555555555444
No 64
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=49.35 E-value=52 Score=28.34 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=43.9
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEe---CCCHHHHHHHHHHHhhh
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT---NPEFREITEILSNLSQE 85 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~---nlt~~em~~~l~~~~~~ 85 (245)
...|+|+|.-. .+.+|..=++.-.+.++++|++.+.+. +.|.+|+.+.++++-+.
T Consensus 34 ~~P~Lavilvg---------~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 91 (286)
T 4a5o_A 34 RVPGLAVILVG---------TDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDD 91 (286)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred CCceEEEEEeC---------CCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45799999644 345677778899999999999987665 89999999999888653
No 65
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=48.26 E-value=56 Score=31.05 Aligned_cols=55 Identities=5% Similarity=0.126 Sum_probs=36.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHH
Q psy13938 25 GRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNL 82 (245)
Q Consensus 25 G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~ 82 (245)
-+.+|+||..+.. ............+.+.|+.+|+.+....--+.+++.+.|++.
T Consensus 175 ~livi~nnN~~~i---~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~ 229 (616)
T 3mos_A 175 NLVAILDINRLGQ---SDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 229 (616)
T ss_dssp TEEEEEEECSBCS---SSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC
T ss_pred cEEEEEECCCCCC---cCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc
Confidence 3677777766642 222222223567888999999998866545778888888543
No 66
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=48.14 E-value=35 Score=25.20 Aligned_cols=69 Identities=23% Similarity=0.262 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCC-CCceEEEEeccCCc---c----hhhhhhcccccccc
Q psy13938 46 SGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHS-DADCLVITVLTHGL---G----EQKLWLPFTADKCR 117 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~-~~d~~vv~ilSHG~---~----i~~I~~~f~~~~c~ 117 (245)
|+.=++.|.+.+++.|++|.+..= +. +...+.. .+|.+++..-++|. . +.++++.+.. .
T Consensus 15 T~~~A~~ia~~l~~~g~~v~~~~~-~~---------~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~---~ 81 (148)
T 3f6r_A 15 TESIAQKLEELIAAGGHEVTLLNA-AD---------ASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR---I 81 (148)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEET-TT---------BCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG---T
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeh-hh---------CCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc---c
Confidence 556677789999999999887642 11 1112345 78999999988884 5 4555554432 3
Q ss_pred ccCCCceEEE
Q psy13938 118 TLAGKPKIFF 127 (245)
Q Consensus 118 ~L~~KPKlf~ 127 (245)
.|.+|+-.+|
T Consensus 82 ~l~~k~~~vf 91 (148)
T 3f6r_A 82 GLAGRKVAAF 91 (148)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 4778875554
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=47.97 E-value=45 Score=25.18 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=31.5
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE-eCCCHHHHHHHHHHHhh
Q psy13938 24 RGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY-TNPEFREITEILSNLSQ 84 (245)
Q Consensus 24 ~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~-~nlt~~em~~~l~~~~~ 84 (245)
.+.+||+.| +...++.|.+.|++.|+.+..+ .+++..+-.+.+++|..
T Consensus 30 ~~~~lVF~~-------------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 78 (165)
T 1fuk_A 30 VTQAVIFCN-------------TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 78 (165)
T ss_dssp CSCEEEEES-------------SHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-------------CHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 355777665 3467777777777777776433 46677776666666653
No 68
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=46.88 E-value=66 Score=23.11 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCcEEE---EEeCCCHHHHHHHHHHHhhhcCCCCceEEEEecc
Q psy13938 48 ADVKNLEAAFYALGFEVS---VYTNPEFREITEILSNLSQEDHSDADCLVITVLT 99 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~---~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilS 99 (245)
+-..++.+++++.|..|. -.-++|..++.++..++.+.-..+.|++.++-+.
T Consensus 22 kR~~kv~k~~~~yg~rvQ~SVFe~~lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~ 76 (100)
T 4es1_A 22 KRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLG 76 (100)
T ss_dssp HHHHHHHHHHHTTEEEEETTEEEEEECHHHHHHHHHHHHHHSCTTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhChhheeeEEEEEcCHHHHHHHHHHHHhhcCCCCCEEEEEEcC
Confidence 556778888888887773 3457999999998888887544566888887765
No 69
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=46.28 E-value=52 Score=28.60 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCHH------HHHHHHHHHhhh-cCCCCceEEEEeccCCcc-hhhhhhccccccccc
Q psy13938 47 GADVKNLEAAFYALGFEVSVYTNPEFR------EITEILSNLSQE-DHSDADCLVITVLTHGLG-EQKLWLPFTADKCRT 118 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~~nlt~~------em~~~l~~~~~~-~~~~~d~~vv~ilSHG~~-i~~I~~~f~~~~c~~ 118 (245)
+...+.-.+.|+++||+|....++... .-++...++.+. .-.+.+++++ .-|+. ...|..++.-+ .
T Consensus 29 ~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~---~rGG~g~~rlL~~LD~~---~ 102 (327)
T 4h1h_A 29 DNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILT---VIGGFNSNQLLPYLDYD---L 102 (327)
T ss_dssp HHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEE---SCCCSCGGGGGGGCCHH---H
T ss_pred HHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEE---cCCchhHHHHhhhcchh---h
Confidence 345677788999999999988776431 233444444332 1133444444 44554 44455544321 2
Q ss_pred cCCCceEEE
Q psy13938 119 LAGKPKIFF 127 (245)
Q Consensus 119 L~~KPKlf~ 127 (245)
++..||+|+
T Consensus 103 i~~~PK~~~ 111 (327)
T 4h1h_A 103 ISENPKILC 111 (327)
T ss_dssp HHHSCCEEE
T ss_pred hccCCeEEE
Confidence 456788886
No 70
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=46.18 E-value=38 Score=30.25 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCCH------HHHHHHHHHHhhh-cCCCCceEEEEeccCCcc-hhhhhhcccccccccc
Q psy13938 48 ADVKNLEAAFYALGFEVSVYTNPEF------REITEILSNLSQE-DHSDADCLVITVLTHGLG-EQKLWLPFTADKCRTL 119 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~~~~nlt~------~em~~~l~~~~~~-~~~~~d~~vv~ilSHG~~-i~~I~~~f~~~~c~~L 119 (245)
...+...+.|+++||+|....++.. ..-++...++.+. .-...++++|+. |+. ...|..++.- ..+
T Consensus 61 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r---GGyga~rlLp~LD~---~~i 134 (371)
T 3tla_A 61 NRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI---GGDNSNSLLPFLDY---DAI 134 (371)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC---CCSCGGGGGGGSCH---HHH
T ss_pred HHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc---ccccHHHHHhhcCh---hhH
Confidence 4566678899999999998876533 2344555555443 113445554444 444 3444444321 124
Q ss_pred CCCceEEE
Q psy13938 120 AGKPKIFF 127 (245)
Q Consensus 120 ~~KPKlf~ 127 (245)
+..||+|+
T Consensus 135 ~~~PK~fi 142 (371)
T 3tla_A 135 IANPKIII 142 (371)
T ss_dssp HHSCCEEE
T ss_pred HhCCcEEE
Confidence 45799886
No 71
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=45.11 E-value=51 Score=28.38 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEe---CCCHHHHHHHHHHHhhh
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT---NPEFREITEILSNLSQE 85 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~---nlt~~em~~~l~~~~~~ 85 (245)
...|+|+|.-. .+.+|..=++.-.+.++++|++.+.+. +.|.+|+.+.++++-+.
T Consensus 33 ~~P~Lavilvg---------~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 90 (285)
T 3l07_A 33 ITPKLVAIIVG---------NDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 90 (285)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred CCceEEEEEEC---------CCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999643 345677778889999999999987665 88999999999888653
No 72
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=44.10 E-value=81 Score=22.16 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHH
Q psy13938 47 GADVKNLEAAFYALGFEVSVYTNPEFREITEIL 79 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l 79 (245)
....+.|+..|++.||.|....+ .++..+.+
T Consensus 16 ~~~~~~l~~~l~~~g~~v~~~~~--~~~a~~~l 46 (140)
T 3grc_A 16 PDIARLLNLMLEKGGFDSDMVHS--AAQALEQV 46 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECC--HHHHHHHH
Confidence 45678899999999999877764 34444444
No 73
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=43.63 E-value=46 Score=25.47 Aligned_cols=37 Identities=8% Similarity=-0.033 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEE-eCCCHHHHHHHHHHHh
Q psy13938 47 GADVKNLEAAFYALGFEVSVY-TNPEFREITEILSNLS 83 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~-~nlt~~em~~~l~~~~ 83 (245)
...++.|.+.|+..|+.+..+ .+++..+-.+.+++|.
T Consensus 41 ~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 78 (172)
T 1t5i_A 41 VQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 78 (172)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHH
Confidence 456666777777766665433 3566666555555554
No 74
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=42.95 E-value=84 Score=22.03 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCc-EE---EEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEecc
Q psy13938 48 ADVKNLEAAFYALGF-EV---SVYTNPEFREITEILSNLSQEDHSDADCLVITVLT 99 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF-~V---~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilS 99 (245)
+-..++.+++++.|| .| .-.-++|..++.++..++.+.-....|++.++-++
T Consensus 16 krr~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~ 71 (91)
T 3exc_X 16 SKRNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKLIVDTNTDIVHIIPLG 71 (91)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHHHSCTTTCEEEEEEEC
T ss_pred hHHHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEeC
Confidence 445889999999996 44 12236898888888888876533457888887765
No 75
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=42.82 E-value=70 Score=22.96 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCcEEE---EEeCCCHHHHHHHHHHHhhhcCCCCceEEEEecc
Q psy13938 48 ADVKNLEAAFYALGFEVS---VYTNPEFREITEILSNLSQEDHSDADCLVITVLT 99 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~---~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilS 99 (245)
+-..++.+++++.|.-|. -.-.+|..++.++..++.+.-....|++.++.++
T Consensus 25 kr~~kv~k~l~~yG~rvQ~SVFe~~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~ 79 (103)
T 3oq2_A 25 RRLRRIAKACQDYGQRVQYSVFECVVDPAQWAKLKHRLLSEMDKEKDCLRFYYLG 79 (103)
T ss_dssp HHHHHHHHHHGGGEEEEETTEEEEEECHHHHHHHHHHHHHHSCTTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhCccceEEEEEEEcCHHHHHHHHHHHHHhcCCCCCEEEEEEeC
Confidence 456667778888886552 2336899999988888877533556888777665
No 76
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=41.46 E-value=39 Score=29.58 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCCH------HHHHHHHHHHhhh-cCCCCceEEEEeccCCcc-hhhhhhcccccccccc
Q psy13938 48 ADVKNLEAAFYALGFEVSVYTNPEF------REITEILSNLSQE-DHSDADCLVITVLTHGLG-EQKLWLPFTADKCRTL 119 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~~~~nlt~------~em~~~l~~~~~~-~~~~~d~~vv~ilSHG~~-i~~I~~~f~~~~c~~L 119 (245)
...+.-.+.|+++||+|....+... ..-++.+.++.+. .-...++++|+. |+. ...|..++.- ..+
T Consensus 31 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r---GG~g~~rlL~~lD~---~~i 104 (336)
T 3sr3_A 31 KRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI---GGMNSNSLLPYIDY---DAF 104 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC---CCSCGGGGGGGSCH---HHH
T ss_pred HHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc---ccccHHHHhhhcCh---hHH
Confidence 4566778899999999998765432 2344555555442 123445554444 444 3444444321 124
Q ss_pred CCCceEEE
Q psy13938 120 AGKPKIFF 127 (245)
Q Consensus 120 ~~KPKlf~ 127 (245)
+..||+|+
T Consensus 105 ~~~PK~~~ 112 (336)
T 3sr3_A 105 QNNPKIMI 112 (336)
T ss_dssp HHSCCEEE
T ss_pred hhCCeEEE
Confidence 45799986
No 77
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A
Probab=39.73 E-value=28 Score=31.30 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEEeC
Q psy13938 44 PGSGADVKNLEAAFYALGFEVSVYTN 69 (245)
Q Consensus 44 ~Gs~~D~~~l~~~f~~LgF~V~~~~n 69 (245)
.|+-.+...|.++...|||+|.+..+
T Consensus 210 fGAGhva~ala~~a~~lg~~V~v~D~ 235 (386)
T 2we8_A 210 FGAIDFAAAVAQQGAFLGYRVTVCDA 235 (386)
T ss_dssp ECCSTHHHHHHHHHHHTTCEEEEEES
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 57889999999999999999999875
No 78
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=38.18 E-value=97 Score=26.91 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=46.5
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE---eCCCHHHHHHHHHHHhhhcCCCCceEEE
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY---TNPEFREITEILSNLSQEDHSDADCLVI 95 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~---~nlt~~em~~~l~~~~~~~~~~~d~~vv 95 (245)
...|+|+|+-. ++.+|..=++.-.+..+++|++.+.+ .+.|.+|+.+.++++-+. .+.+.++|
T Consensus 52 ~~P~LavIlVG---------~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D--~~V~GIlV 117 (303)
T 4b4u_A 52 RTPILATILVG---------DDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN--PDVHGILL 117 (303)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC--TTCCEEEE
T ss_pred CCCcEEEEEeC---------CCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC--CCccEEEE
Confidence 46789998754 34557777888999999999987555 578999999999888654 23344433
No 79
>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}
Probab=37.78 E-value=27 Score=31.15 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEEeCC
Q psy13938 44 PGSGADVKNLEAAFYALGFEVSVYTNP 70 (245)
Q Consensus 44 ~Gs~~D~~~l~~~f~~LgF~V~~~~nl 70 (245)
.|+-.++..|.++...|||+|.+..+-
T Consensus 205 ~GaGhva~aLa~la~~lgf~V~v~D~R 231 (362)
T 3on5_A 205 FGAGPDVPPLVTFASNVGFYTVVTDWR 231 (362)
T ss_dssp ECCSTTHHHHHHHHHHHTEEEEEEESC
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEECCC
Confidence 478889999999999999999998764
No 80
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=36.44 E-value=55 Score=26.01 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=35.6
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEE-EeCCCHHHHHHHHHHHhhh
Q psy13938 23 RRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSV-YTNPEFREITEILSNLSQE 85 (245)
Q Consensus 23 ~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~-~~nlt~~em~~~l~~~~~~ 85 (245)
+.+.+||+.| +..+++.|.+.|++.|+.+.. +-+++.++-.+.++.|...
T Consensus 30 ~~~~~lVF~~-------------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 80 (212)
T 3eaq_A 30 SPDRAMVFTR-------------TKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG 80 (212)
T ss_dssp CCSCEEEECS-------------SHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS
T ss_pred CCCeEEEEeC-------------CHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 3467788765 456788888888888887754 4567777777777777643
No 81
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=34.45 E-value=1.2e+02 Score=21.49 Aligned_cols=54 Identities=7% Similarity=0.122 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHhCCcE-E---EEEeCCCHHHHHHHHHHHhhhc------CCCCceEEEEecc
Q psy13938 46 SGADVKNLEAAFYALGFE-V---SVYTNPEFREITEILSNLSQED------HSDADCLVITVLT 99 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~-V---~~~~nlt~~em~~~l~~~~~~~------~~~~d~~vv~ilS 99 (245)
+++...++.+.+++.||. | .-.-++|..++.++..++.+.- ....|++.++-++
T Consensus 13 ~~kr~~kv~k~L~~yGl~rvQ~SVFe~~lt~~~~~~l~~~L~~~i~~~~~~d~~~Dsv~iy~l~ 76 (101)
T 2ivy_A 13 DDNLRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPIT 76 (101)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEEECHHHHHHHHHHHHHHTCSCCCSTTCCEEEEEEEEC
T ss_pred ChHHHHHHHHHHHHhCChhccccEEEEEcCHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEEEeC
Confidence 357888999999999964 3 2224678888877777666542 2456777776665
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=33.81 E-value=82 Score=24.62 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=8.9
Q ss_pred HHHHHHHHhCCcEEEEEeC
Q psy13938 51 KNLEAAFYALGFEVSVYTN 69 (245)
Q Consensus 51 ~~l~~~f~~LgF~V~~~~n 69 (245)
..|.++++..+-.+.++-+
T Consensus 44 ~~L~~~l~~~~~~~lVF~~ 62 (191)
T 2p6n_A 44 VYLLECLQKTPPPVLIFAE 62 (191)
T ss_dssp HHHHHHHTTSCSCEEEECS
T ss_pred HHHHHHHHhCCCCEEEEEC
Confidence 3444555544444444443
No 83
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=33.81 E-value=1.1e+02 Score=26.60 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=47.6
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE---eCCCHHHHHHHHHHHhhhcCCCCceEEEE
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY---TNPEFREITEILSNLSQEDHSDADCLVIT 96 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~---~nlt~~em~~~l~~~~~~~~~~~d~~vv~ 96 (245)
.+.|+|+|.-. .+.+|..=++.-.+..+++|+..+.+ .+.|.+|+.+.+.++-+. ...+.++|-
T Consensus 34 ~~P~LavilvG---------~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D--~~V~GIlvq 100 (301)
T 1a4i_A 34 FTPRLAILQVG---------NRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNED--STVHGFLVQ 100 (301)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC--TTCCEEEEC
T ss_pred CCCEEEEEEeC---------CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC--CCCcEEEEe
Confidence 34799998643 34567777888999999999998766 479999999999988653 334445443
No 84
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=33.70 E-value=1.1e+02 Score=26.13 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhCCcEEEEE-eCCCHHHHHHHHHHH
Q psy13938 48 ADVKNLEAAFYALGFEVSVY-TNPEFREITEILSNL 82 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~~~-~nlt~~em~~~l~~~ 82 (245)
.+++.+.+.|++.|+.+..+ .+++.++-.+.+++|
T Consensus 287 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 287 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHH
Confidence 34444444444444443322 234444444444444
No 85
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=33.67 E-value=32 Score=26.37 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCc-c----hhhhhhccccccccccC
Q psy13938 46 SGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGL-G----EQKLWLPFTADKCRTLA 120 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~-~----i~~I~~~f~~~~c~~L~ 120 (245)
|+.=++.|.+.+...|++|.+.. +.. +...+...+|.++++.-+||. . +.++++.+....-+.|.
T Consensus 23 T~~~A~~ia~~l~~~g~~v~~~~-~~~---------~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~~~l~ 92 (167)
T 1ykg_A 23 ARRVAEALRDDLLAAKLNVKLVN-AGD---------YKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLE 92 (167)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEE-GGG---------CCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTCCCCT
T ss_pred HHHHHHHHHHHHHHCCCceEEee-hhh---------CCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhccccccC
Confidence 44556778888888899877653 111 111223567899999999963 3 45555555432224466
Q ss_pred CCceEEE
Q psy13938 121 GKPKIFF 127 (245)
Q Consensus 121 ~KPKlf~ 127 (245)
+|+-.+|
T Consensus 93 ~k~~avf 99 (167)
T 1ykg_A 93 NTAFAVF 99 (167)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 7653333
No 86
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=33.18 E-value=57 Score=23.66 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcc------hhhhhhcccccccccc
Q psy13938 46 SGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLG------EQKLWLPFTADKCRTL 119 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~------i~~I~~~f~~~~c~~L 119 (245)
|+.=++.|.+.+++.|.+|.+.. ++..+. .+...+|.+++..-+||.. +.++++.+.. .|
T Consensus 12 T~~iA~~ia~~l~~~g~~v~~~~-~~~~~~---------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~----~l 77 (138)
T 5nul_A 12 TEKMAELIAKGIIESGKDVNTIN-VSDVNI---------DELLNEDILILGCSAMTDEVLEESEFEPFIEEIST----KI 77 (138)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEE-GGGCCH---------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG----GC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEE-hhhCCH---------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHh----hc
Confidence 44556778999999999887663 222111 1236789999999998764 3344443322 27
Q ss_pred CCCceEEE
Q psy13938 120 AGKPKIFF 127 (245)
Q Consensus 120 ~~KPKlf~ 127 (245)
.+|+=.+|
T Consensus 78 ~~k~~~~f 85 (138)
T 5nul_A 78 SGKKVALF 85 (138)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 77764444
No 87
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=33.11 E-value=93 Score=26.72 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=43.3
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE---eCCCHHHHHHHHHHHhhh
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY---TNPEFREITEILSNLSQE 85 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~---~nlt~~em~~~l~~~~~~ 85 (245)
...|+|+|.-. .+.+|..=++.-.+.++++|++.+.+ .+.|.+|+.+.++++-+.
T Consensus 32 ~~P~Lavilvg---------~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 89 (285)
T 3p2o_A 32 IESCLAVILVG---------DNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHD 89 (285)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEeC---------CCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36799999643 34556777889999999999997665 468999999999888654
No 88
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=32.94 E-value=27 Score=23.98 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCcEEE
Q psy13938 48 ADVKNLEAAFYALGFEVS 65 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~ 65 (245)
.|.+.|.+.|+++||+|.
T Consensus 61 id~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 61 TPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCEee
Confidence 588999999999999996
No 89
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=32.87 E-value=1.2e+02 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHhCCcEEEE-EeCCCHHHHHHHHHHHhh
Q psy13938 46 SGADVKNLEAAFYALGFEVSV-YTNPEFREITEILSNLSQ 84 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~-~~nlt~~em~~~l~~~~~ 84 (245)
+...++.|.+.|++.|+.+.. +.+++..+=.+.+++|..
T Consensus 454 t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~ 493 (661)
T 2d7d_A 454 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL 493 (661)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc
Confidence 456666677777777766543 445666666666666653
No 90
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=30.99 E-value=1.1e+02 Score=26.30 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=43.4
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE---eCCCHHHHHHHHHHHhhh
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY---TNPEFREITEILSNLSQE 85 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~---~nlt~~em~~~l~~~~~~ 85 (245)
.+.|+++|.-. .+.+|..=++.-.+..+++|+..+.+ .+.|.+|+.+.+.++-+.
T Consensus 31 ~~P~Lavilvg---------~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 31 RTPGLGTILVG---------DDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNAN 88 (281)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred CCceEEEEEeC---------CChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 44799999643 34567777888999999999998766 478999999999888654
No 91
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.59 E-value=1.5e+02 Score=21.29 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcc
Q psy13938 47 GADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLG 103 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~ 103 (245)
+.-...+++..++-||+|.... +.+|+++.++++.++ |.+.++++.-...+
T Consensus 12 eetlrkfkdiikkngfkvrtvr--spqelkdsieelvkk----ynativvvvvddke 62 (134)
T 2l69_A 12 EETLRKFKDIIKKNGFKVRTVR--SPQELKDSIEELVKK----YNATIVVVVVDDKE 62 (134)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEC--SHHHHHHHHHHHTTC----CCCEEEEEECSSHH
T ss_pred HHHHHHHHHHHHhcCceEEEec--CHHHHHHHHHHHHHH----hCCeEEEEEEccHH
Confidence 3456678888999999998876 568888888887654 44445554444433
No 92
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=30.14 E-value=48 Score=28.78 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCH------HHHHHHHHHHhhh-cCCCCceEEEEeccCCcchhhhhhcccccccccc
Q psy13938 47 GADVKNLEAAFYALGFEVSVYTNPEF------REITEILSNLSQE-DHSDADCLVITVLTHGLGEQKLWLPFTADKCRTL 119 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~~nlt~------~em~~~l~~~~~~-~~~~~d~~vv~ilSHG~~i~~I~~~f~~~~c~~L 119 (245)
....+...+.|+++||+|....++.. ..-++...++.+. .-.+.++++|+.=+-| ...|..++.- ..+
T Consensus 31 ~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyg--a~rlLp~LD~---~~i 105 (311)
T 1zl0_A 31 TDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYG--CGQLLPGLDW---GRL 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSC--GGGGTTTCCH---HHH
T ss_pred HHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcC--HHHHhhccch---hhh
Confidence 56678889999999999998765432 2334444444332 1133444444433333 4444444431 124
Q ss_pred CC-CceEEE
Q psy13938 120 AG-KPKIFF 127 (245)
Q Consensus 120 ~~-KPKlf~ 127 (245)
+. .||+|+
T Consensus 106 ~~a~PK~~i 114 (311)
T 1zl0_A 106 QAASPRPLI 114 (311)
T ss_dssp HHSCCCCEE
T ss_pred hccCCCEEE
Confidence 44 799987
No 93
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=29.89 E-value=1.7e+02 Score=26.45 Aligned_cols=79 Identities=13% Similarity=0.230 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCc-EE-EEEeC--CCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcchhhhhhccccccccccCCCce
Q psy13938 49 DVKNLEAAFYALGF-EV-SVYTN--PEFREITEILSNLSQEDHSDADCLVITVLTHGLGEQKLWLPFTADKCRTLAGKPK 124 (245)
Q Consensus 49 D~~~l~~~f~~LgF-~V-~~~~n--lt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~i~~I~~~f~~~~c~~L~~KPK 124 (245)
+.+.++...+..+| .| .++ + .+.+.|.+.+. . .+.++.+.+||.+...-.+.|.......|.+.+|
T Consensus 166 ~~~~~~~~~~~~~~~~v~k~y-dp~~~~~~I~~~ln----~-----G~~ivnY~GHG~~~~w~~e~~~~~dv~~l~N~~~ 235 (435)
T 1cvr_A 166 HENVIANLLTQYGYTKIIKCY-DPGVTPKNIIDAFN----G-----GISLVNYTGHGSETAWGTSHFGTTHVKQLTNSNQ 235 (435)
T ss_dssp HHHHHHHHHHHHTCSEEEEEE-SSSCCHHHHHHHHH----H-----CCSEEEEESCBCSSBBTTTCCBTTTGGGCCCTTC
T ss_pred HHHHHHhhhhcCCcceeEEec-CCccCHHHHHHHHh----C-----CCeEEEEecCCCcccccccccChhhHHhhcCCCC
Confidence 44455666555555 55 444 4 33344444432 1 4578999999988110011244455677888777
Q ss_pred E--EEEecccCcccC
Q psy13938 125 I--FFIQACRGTKLD 137 (245)
Q Consensus 125 l--f~iQACRG~~~~ 137 (245)
+ ++..+|--..++
T Consensus 236 lPl~it~tC~~g~Fd 250 (435)
T 1cvr_A 236 LPFIFDVACVNGDFL 250 (435)
T ss_dssp CCEEEEESSSTTCTT
T ss_pred CcEEEEeECcCCCCC
Confidence 6 888899877765
No 94
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=29.22 E-value=69 Score=24.85 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=10.0
Q ss_pred HHHHHHHHHhC--CcEEEEEeC
Q psy13938 50 VKNLEAAFYAL--GFEVSVYTN 69 (245)
Q Consensus 50 ~~~l~~~f~~L--gF~V~~~~n 69 (245)
.+.|.++++.. +-.+.++-+
T Consensus 33 ~~~L~~ll~~~~~~~k~lVF~~ 54 (185)
T 2jgn_A 33 RSFLLDLLNATGKDSLTLVFVE 54 (185)
T ss_dssp HHHHHHHHHHC-CCSCEEEEES
T ss_pred HHHHHHHHHhcCCCCeEEEEEC
Confidence 34455666665 334444443
No 95
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=29.08 E-value=1.1e+02 Score=25.52 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=7.8
Q ss_pred HHHHHHHHhCCcEEEEEe
Q psy13938 51 KNLEAAFYALGFEVSVYT 68 (245)
Q Consensus 51 ~~l~~~f~~LgF~V~~~~ 68 (245)
+.|.+.++.-+..+.++-
T Consensus 228 ~~l~~~l~~~~~~~lvf~ 245 (367)
T 1hv8_A 228 EALCRLLKNKEFYGLVFC 245 (367)
T ss_dssp HHHHHHHCSTTCCEEEEC
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 334444444444444443
No 96
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=28.97 E-value=1.5e+02 Score=27.32 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=43.1
Q ss_pred CceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcE--------EEEEeCCCHHHHHHHHHHHhhhcCCCCceEE
Q psy13938 23 RRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFE--------VSVYTNPEFREITEILSNLSQEDHSDADCLV 94 (245)
Q Consensus 23 ~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~--------V~~~~nlt~~em~~~l~~~~~~~~~~~d~~v 94 (245)
+.|.+||+.| +...++.|.+.|++++.+ +....--+.++-.+.+++|...+ .....++
T Consensus 438 ~~~k~lVF~~-------------~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~-~~~~~il 503 (590)
T 3h1t_A 438 RFAKTIVFCV-------------DQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELE-TSTPVIL 503 (590)
T ss_dssp TTSEEEEEES-------------SHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTT-CCCCCEE
T ss_pred CCccEEEEEC-------------CHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCC-CCCCEEE
Confidence 4478999987 346788899999887653 33333334445777888887642 2234455
Q ss_pred EE--eccCCcc
Q psy13938 95 IT--VLTHGLG 103 (245)
Q Consensus 95 v~--ilSHG~~ 103 (245)
|. +++-|..
T Consensus 504 vtt~~l~~GiD 514 (590)
T 3h1t_A 504 TTSQLLTTGVD 514 (590)
T ss_dssp EESSTTTTTCC
T ss_pred EECChhhcCcc
Confidence 54 5778866
No 97
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=28.96 E-value=1.4e+02 Score=28.32 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHhCCcEEEE-EeCCCHHHHHHHHHHHhhhcCCCCceEEEE--eccCCcc
Q psy13938 46 SGADVKNLEAAFYALGFEVSV-YTNPEFREITEILSNLSQEDHSDADCLVIT--VLTHGLG 103 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~-~~nlt~~em~~~l~~~~~~~~~~~d~~vv~--ilSHG~~ 103 (245)
+...++.|.+.|++.|+.+.. +.+++..+=.+.+++|... ..+ ++|. +++.|-.
T Consensus 448 t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g---~~~-VLvaT~~l~~GlD 504 (664)
T 1c4o_A 448 TVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG---HYD-CLVGINLLREGLD 504 (664)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT---SCS-EEEESCCCCTTCC
T ss_pred CHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC---Cce-EEEccChhhcCcc
Confidence 567889999999999998765 5678888888888888643 222 3344 7788876
No 98
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=28.90 E-value=1.2e+02 Score=24.00 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCcE-EEEE---------eCCCHHHHHHHHHHHhhhcC
Q psy13938 48 ADVKNLEAAFYALGFE-VSVY---------TNPEFREITEILSNLSQEDH 87 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~-V~~~---------~nlt~~em~~~l~~~~~~~~ 87 (245)
.-...|+++|+++||+ |.+| .+.+.+++...|++.-+...
T Consensus 22 v~MadLr~~l~~lGf~~V~TyI~SGNvvF~s~~~~~~l~~~ie~~l~~~f 71 (183)
T 2hiy_A 22 VVMAELRQELTNLGLEKVESYINSGNIFFTSIDSKAQLVEKLETFFAVHY 71 (183)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTTTEEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHcCCccceEEEecCCEEEecCCCHHHHHHHHHHHHHHhc
Confidence 4478899999999996 5554 34577888888888766543
No 99
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=28.22 E-value=1e+02 Score=25.16 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHHHHHhCCcEEEE
Q psy13938 52 NLEAAFYALGFEVSV 66 (245)
Q Consensus 52 ~l~~~f~~LgF~V~~ 66 (245)
...+.|+++||+++.
T Consensus 99 ~~~~~L~~lGf~ie~ 113 (220)
T 3ncv_A 99 DHAETLAGFGLELSD 113 (220)
T ss_dssp HHHHHHHHTTCEEEC
T ss_pred HHHHHHHhCCCEEEE
Confidence 345667777777654
No 100
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=27.69 E-value=97 Score=21.39 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcchhhhhhccccccccccCCCceEE
Q psy13938 47 GADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLGEQKLWLPFTADKCRTLAGKPKIF 126 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~i~~I~~~f~~~~c~~L~~KPKlf 126 (245)
....+.|++.|++.||.|....+ .++..+.+ .+ ...|.+++=+.-.|..--++.+.++.. . ....|.++
T Consensus 16 ~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l---~~---~~~dlii~d~~l~~~~g~~~~~~l~~~-~--~~~~~~ii 84 (132)
T 3lte_A 16 QAMAAAIERVLKRDHWQVEIAHN--GFDAGIKL---ST---FEPAIMTLDLSMPKLDGLDVIRSLRQN-K--VANQPKIL 84 (132)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESS--HHHHHHHH---HH---TCCSEEEEESCBTTBCHHHHHHHHHTT-T--CSSCCEEE
T ss_pred HHHHHHHHHHHHHCCcEEEEeCC--HHHHHHHH---Hh---cCCCEEEEecCCCCCCHHHHHHHHHhc-C--ccCCCeEE
Confidence 45678899999999999987665 34443333 22 234555444433343322222222211 0 12356777
Q ss_pred EEec
Q psy13938 127 FIQA 130 (245)
Q Consensus 127 ~iQA 130 (245)
++.+
T Consensus 85 ~~~~ 88 (132)
T 3lte_A 85 VVSG 88 (132)
T ss_dssp EECC
T ss_pred EEeC
Confidence 7644
No 101
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=27.09 E-value=79 Score=22.69 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=23.3
Q ss_pred ccCCCCCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEE
Q psy13938 17 YNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEV 64 (245)
Q Consensus 17 Y~m~~~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V 64 (245)
|... .+.+.-|.|.|-.+. .+.+.|+++|++.|.+|
T Consensus 21 ~~~~-p~~~~~l~VgnLp~~-----------~te~dL~~~F~~~G~~v 56 (111)
T 2jvr_A 21 MSKL-PAKRYRITMKNLPEG-----------CSWQDLKDLARENSLET 56 (111)
T ss_dssp -----CCCCEEEEEECSSCC-----------CCHHHHHHHHHHHTCCC
T ss_pred cCCC-CCCCCEEEEECCCCC-----------CCHHHHHHHHHHhCCee
Confidence 4443 456788888887654 35667889999998644
No 102
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=26.06 E-value=1.7e+02 Score=24.67 Aligned_cols=76 Identities=14% Similarity=-0.008 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHh--CCcEEEEEeCCC------HHHHHHHHHHHhhh-cCCCCceEEEEeccCCcchhhhhhcccccccc
Q psy13938 47 GADVKNLEAAFYA--LGFEVSVYTNPE------FREITEILSNLSQE-DHSDADCLVITVLTHGLGEQKLWLPFTADKCR 117 (245)
Q Consensus 47 ~~D~~~l~~~f~~--LgF~V~~~~nlt------~~em~~~l~~~~~~-~~~~~d~~vv~ilSHG~~i~~I~~~f~~~~c~ 117 (245)
....+...++++. +||+|....++. +..-++.+.++.+. .-.+.++++|+.=+-|. ..|..++.- .
T Consensus 17 ~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga--~rlL~~lD~---~ 91 (274)
T 3g23_A 17 REDSARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGYGA--NRIAEDALA---R 91 (274)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSSCT--HHHHHHHHT---T
T ss_pred HHHHHHHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeeccccH--HHHHHhhhh---h
Confidence 3456666778887 699999876642 22344555555442 12455666655444443 233332211 1
Q ss_pred cc-CCCceEEE
Q psy13938 118 TL-AGKPKIFF 127 (245)
Q Consensus 118 ~L-~~KPKlf~ 127 (245)
.+ +..||+|+
T Consensus 92 ~i~~~~PK~~~ 102 (274)
T 3g23_A 92 LGRAASAKQYL 102 (274)
T ss_dssp CCGGGGGCEEE
T ss_pred hhhhhCCcEEE
Confidence 12 35799986
No 103
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=25.94 E-value=1.2e+02 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEE-eCCCHHHHHHHHHHHhh
Q psy13938 47 GADVKNLEAAFYALGFEVSVY-TNPEFREITEILSNLSQ 84 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~-~nlt~~em~~~l~~~~~ 84 (245)
...++.+.+.|++.|+.+..+ .+++.++-.+.+++|..
T Consensus 253 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 253 KKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 456677777777777765433 35666666666666653
No 104
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=25.83 E-value=1e+02 Score=24.30 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=45.0
Q ss_pred CCc-HHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcc----hhhhhhccccccccc
Q psy13938 44 PGS-GADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLG----EQKLWLPFTADKCRT 118 (245)
Q Consensus 44 ~Gs-~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~----i~~I~~~f~~~~c~~ 118 (245)
.|+ +.=++.|.+.+...|++|.+.. ++. +. .+...++.++++.-+|.++ +.++++.+.+..-+.
T Consensus 32 tGnTe~~A~~ia~~l~~~g~~v~v~~-l~~---------~~-~~l~~~d~vi~g~~Ty~G~~p~~~~~fl~~L~~~~~~~ 100 (191)
T 1bvy_F 32 MGTAEGTARDLADIAMSKGFAPQVAT-LDS---------HA-GNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADE 100 (191)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEEE-GGG---------ST-TCCCSSSEEEEEECCBTTBCCTTTHHHHHHHHTCCSSC
T ss_pred ChHHHHHHHHHHHHHHhCCCceEEee-HHH---------hh-hhhhhCCeEEEEEeecCCCcCHHHHHHHHHHHhccchh
Confidence 444 4446778899998999887742 221 11 2456688888888888555 455555554333344
Q ss_pred cCCCceEEE
Q psy13938 119 LAGKPKIFF 127 (245)
Q Consensus 119 L~~KPKlf~ 127 (245)
|.+|+-.+|
T Consensus 101 l~~~~~avf 109 (191)
T 1bvy_F 101 VKGVRYSVF 109 (191)
T ss_dssp CTTCCEEEE
T ss_pred hCCCEEEEE
Confidence 777764444
No 105
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=24.99 E-value=1.7e+02 Score=24.98 Aligned_cols=55 Identities=5% Similarity=0.055 Sum_probs=42.6
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE---eCCCHHHHHHHHHHHhhh
Q psy13938 21 HPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY---TNPEFREITEILSNLSQE 85 (245)
Q Consensus 21 ~~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~---~nlt~~em~~~l~~~~~~ 85 (245)
....|+|+|.-. .+.+|..=++.-.+..+++|+ .+.+ .+.|.+|+.+.++++-+.
T Consensus 25 ~~~P~Lavilvg---------~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D 82 (276)
T 3ngx_A 25 GLEPSLKLIQIG---------DNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKD 82 (276)
T ss_dssp TCCCEEEEEEES---------CCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCCcEEEEEeC---------CCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 355799999644 345677778889999999999 6554 478999999999888654
No 106
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=24.78 E-value=1.3e+02 Score=25.68 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEE-eCCCHHHHHHHHHHHh
Q psy13938 47 GADVKNLEAAFYALGFEVSVY-TNPEFREITEILSNLS 83 (245)
Q Consensus 47 ~~D~~~l~~~f~~LgF~V~~~-~nlt~~em~~~l~~~~ 83 (245)
..+++.|.+.|++.|+.+..+ .+++.++-.+.+++|.
T Consensus 276 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 313 (412)
T 3fht_A 276 RKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 313 (412)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 345555555555555554333 2455555555555554
No 107
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=24.51 E-value=1.5e+02 Score=25.30 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=8.3
Q ss_pred HHHHHHHHhCC-cEEEEEeC
Q psy13938 51 KNLEAAFYALG-FEVSVYTN 69 (245)
Q Consensus 51 ~~l~~~f~~Lg-F~V~~~~n 69 (245)
+.|.+++..+. -.+.++-+
T Consensus 265 ~~l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 265 DTLCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp HHHHHHHHHHTSSEEEEECS
T ss_pred HHHHHHHHhcCCCcEEEEEc
Confidence 34445554432 24444443
No 108
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.09 E-value=99 Score=22.95 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCcEEE-EEeCCCHHHHHHHHHHHhhhcCCCCceEEEEecc-CCcc-hhhhhhccc
Q psy13938 50 VKNLEAAFYALGFEVS-VYTNPEFREITEILSNLSQEDHSDADCLVITVLT-HGLG-EQKLWLPFT 112 (245)
Q Consensus 50 ~~~l~~~f~~LgF~V~-~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilS-HG~~-i~~I~~~f~ 112 (245)
..-+...|+..||+|. .-.+.+.+++.+..++. +.+.+.+..+. |... +.++.+.++
T Consensus 20 ~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~------~~d~v~lS~~~~~~~~~~~~~i~~l~ 79 (137)
T 1ccw_A 20 NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET------KADAILVSSLYGQGEIDCKGLRQKCD 79 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH------TCSEEEEEECSSTHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc------CCCEEEEEecCcCcHHHHHHHHHHHH
Confidence 4567889999999998 66799999998887654 33455554444 2222 555555554
No 109
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=23.80 E-value=65 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhh
Q psy13938 51 KNLEAAFYALGFEVSVYTNPEFREITEILSNLSQE 85 (245)
Q Consensus 51 ~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~ 85 (245)
....+.++++|+.|.+-...|.+.|.+.++++.++
T Consensus 193 ~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l~~~ 227 (229)
T 3p9z_A 193 NTTALYLQEQGIPSYIAKKPSLEACLELALSLRIK 227 (229)
T ss_dssp HHHHHHHHHTTCCEEECSSSSHHHHHHHHHHTC--
T ss_pred HHHHHHHHHcCCCceeCCCCCHHHHHHHHHHHhhh
Confidence 45678888999999888899999999999887654
No 110
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=23.74 E-value=1.2e+02 Score=25.80 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=39.7
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEE-EeCCCHHHHHHHHHHHhhh
Q psy13938 24 RGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSV-YTNPEFREITEILSNLSQE 85 (245)
Q Consensus 24 ~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~-~~nlt~~em~~~l~~~~~~ 85 (245)
.+.+|||.| +..+++.|.+.|++.|+.+.. |-+++.++-...++.|...
T Consensus 28 ~~~~LVF~~-------------t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g 77 (300)
T 3i32_A 28 PDRAMVFTR-------------TKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG 77 (300)
T ss_dssp CSSEEEECS-------------SHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-------------CHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC
Confidence 467888766 457899999999999998854 4578999989999988754
No 111
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=23.67 E-value=1e+02 Score=22.41 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCC-CceEEEEeccCC--c--c---hhhhhhcccccccc
Q psy13938 46 SGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSD-ADCLVITVLTHG--L--G---EQKLWLPFTADKCR 117 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~-~d~~vv~ilSHG--~--~---i~~I~~~f~~~~c~ 117 (245)
|+.=++.|.+.++..|++|++.. +.. ....+... +|.++++.-.|| . - +.++++.+.. .
T Consensus 14 t~~~a~~i~~~l~~~g~~v~~~~-~~~---------~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~---~ 80 (147)
T 1f4p_A 14 TEYTAETIARELADAGYEVDSRD-AAS---------VEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEE---T 80 (147)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEE-GGG---------CCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGG---S
T ss_pred HHHHHHHHHHHHHhcCCeeEEEe-hhh---------CCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHh---c
Confidence 55556778888888899987763 111 11123456 899999888874 4 2 5555554432 2
Q ss_pred ccCCCceEEE
Q psy13938 118 TLAGKPKIFF 127 (245)
Q Consensus 118 ~L~~KPKlf~ 127 (245)
.|.+|+-.+|
T Consensus 81 ~l~~k~~~v~ 90 (147)
T 1f4p_A 81 GAQGRKVACF 90 (147)
T ss_dssp CCTTCEEEEE
T ss_pred ccCCCEEEEE
Confidence 4777765444
No 112
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=22.99 E-value=1.2e+02 Score=25.97 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=43.1
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEE---eCCCHHHHHHHHHHHhhh
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY---TNPEFREITEILSNLSQE 85 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~---~nlt~~em~~~l~~~~~~ 85 (245)
.+.|+|+|.-. .+.+|..=++.-.+..+++|+..+.+ .+.|.+|+.+.+.++-+.
T Consensus 32 ~~P~LavilvG---------~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 32 RAPGLAVVLVG---------SNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNAD 89 (288)
T ss_dssp CCCEEEEEEES---------CCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTC
T ss_pred CCceEEEEEeC---------CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34799999644 34567777888999999999997655 478999999999888653
No 113
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=22.65 E-value=1.5e+02 Score=25.22 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=10.2
Q ss_pred HHHHHHHHHhCC-cEEEEEeC
Q psy13938 50 VKNLEAAFYALG-FEVSVYTN 69 (245)
Q Consensus 50 ~~~l~~~f~~Lg-F~V~~~~n 69 (245)
...|..+++... -.+.++-+
T Consensus 246 ~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 246 LHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp HHHHHHHHHHSCCSEEEEECS
T ss_pred HHHHHHHHhhcCCCcEEEEEe
Confidence 344556665543 34555544
No 114
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.42 E-value=55 Score=22.87 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=20.7
Q ss_pred CCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHh
Q psy13938 44 PGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLS 83 (245)
Q Consensus 44 ~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~ 83 (245)
.=++...+.|+++|+.+-- .----++.+|++..|+.+.
T Consensus 29 ~l~~~~~~el~~~F~~~D~--d~~G~I~~~El~~~l~~lg 66 (100)
T 2lv7_A 29 DIPEDELEEIREAFKVFDR--DGNGFISKQELGTAMRSLG 66 (100)
T ss_dssp CCCGGGHHHHHHHHHHTCS--SCSSCBCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHcC--CCCCcCCHHHHHHHHHHhC
Confidence 3345566667777776521 1111266677766666553
No 115
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=22.33 E-value=1.9e+02 Score=24.34 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=9.4
Q ss_pred HHHHHHHHHhCC-cEEEEEeC
Q psy13938 50 VKNLEAAFYALG-FEVSVYTN 69 (245)
Q Consensus 50 ~~~l~~~f~~Lg-F~V~~~~n 69 (245)
...|.++++... -.+.++-+
T Consensus 238 ~~~l~~~l~~~~~~~~lvf~~ 258 (391)
T 1xti_A 238 NRKLFDLLDVLEFNQVVIFVK 258 (391)
T ss_dssp HHHHHHHHHHSCCSEEEEECS
T ss_pred HHHHHHHHHhcCCCcEEEEeC
Confidence 344555555543 24444443
No 116
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=21.73 E-value=2.8e+02 Score=21.33 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=29.8
Q ss_pred CcHHHH--HHHHHHHHhCCcEEEEEe--CCCHHHHHHHHHHHhhh
Q psy13938 45 GSGADV--KNLEAAFYALGFEVSVYT--NPEFREITEILSNLSQE 85 (245)
Q Consensus 45 Gs~~D~--~~l~~~f~~LgF~V~~~~--nlt~~em~~~l~~~~~~ 85 (245)
|.-.|. .-|.+.++++|++|..+. .=..++|.+.|++..+.
T Consensus 23 g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~ 67 (172)
T 1mkz_A 23 GEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS 67 (172)
T ss_dssp CGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS
T ss_pred CcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc
Confidence 555554 469999999999986543 23567888888887653
No 117
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=21.63 E-value=47 Score=23.87 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcc------hhhhhhcccccccccc
Q psy13938 46 SGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLG------EQKLWLPFTADKCRTL 119 (245)
Q Consensus 46 s~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~------i~~I~~~f~~~~c~~L 119 (245)
|+.=++.+.+.++.-|++|++.. +...++ .+...+|.+++..-.|+.. +..+++.+. +.|
T Consensus 13 T~~~a~~i~~~l~~~g~~v~~~~-~~~~~~---------~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~----~~l 78 (137)
T 2fz5_A 13 TEAMANEIEAAVKAAGADVESVR-FEDTNV---------DDVASKDVILLGCPAMGSEELEDSVVEPFFTDLA----PKL 78 (137)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEE-TTSCCH---------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHG----GGC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEE-cccCCH---------HHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhh----hhc
Confidence 45556778888888899987764 222111 1234678899988888655 333444332 257
Q ss_pred CCCceEEEE
Q psy13938 120 AGKPKIFFI 128 (245)
Q Consensus 120 ~~KPKlf~i 128 (245)
.+||=.+|.
T Consensus 79 ~~k~~~~~~ 87 (137)
T 2fz5_A 79 KGKKVGLFG 87 (137)
T ss_dssp SSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 888755554
No 118
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=21.44 E-value=84 Score=30.21 Aligned_cols=55 Identities=13% Similarity=0.329 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEE-EEeC-CCHHHHHHHHHHHhh
Q psy13938 26 RALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVS-VYTN-PEFREITEILSNLSQ 84 (245)
Q Consensus 26 ~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~-~~~n-lt~~em~~~l~~~~~ 84 (245)
+.+|+||..+.-+ .+.+... .+.+.+.|+.+|+.+. ...- -+.+++.+.+++..+
T Consensus 180 li~i~d~N~~~i~---~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~ 236 (673)
T 1r9j_A 180 LIVIYDSNYISID---GSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA 236 (673)
T ss_dssp EEEEEEECSBCSS---SBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccc---cchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6777777666421 1111111 3457899999999998 4433 578899999988764
No 119
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=21.12 E-value=3.1e+02 Score=23.31 Aligned_cols=78 Identities=8% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcc--hhhhhhccccccccccCCCceE
Q psy13938 48 ADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLG--EQKLWLPFTADKCRTLAGKPKI 125 (245)
Q Consensus 48 ~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~--i~~I~~~f~~~~c~~L~~KPKl 125 (245)
.-.+.+.+.|++.|+++.+..-....+..+..++.... .+|.+++ -|++ +.++...+.. .+. ..++-|
T Consensus 44 ~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~---~~d~vvv----~GGDGTl~~v~~~l~~--~~~-~~~~pl 113 (332)
T 2bon_A 44 LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKF---GVATVIA----GGGDGTINEVSTALIQ--CEG-DDIPAL 113 (332)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHH---TCSEEEE----EESHHHHHHHHHHHHH--CCS-SCCCEE
T ss_pred chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhc---CCCEEEE----EccchHHHHHHHHHhh--ccc-CCCCeE
Confidence 34677899999999999887655455555555554432 2454333 2655 5555544421 111 123347
Q ss_pred EEEecccCcc
Q psy13938 126 FFIQACRGTK 135 (245)
Q Consensus 126 f~iQACRG~~ 135 (245)
-+|.+=+|+.
T Consensus 114 giiP~Gt~N~ 123 (332)
T 2bon_A 114 GILPLGTAND 123 (332)
T ss_dssp EEEECSSSCH
T ss_pred EEecCcCHHH
Confidence 8887777664
No 120
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=20.98 E-value=2.1e+02 Score=21.40 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEEeccCCcchh--hhhhccccccccccCCC
Q psy13938 45 GSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLGEQ--KLWLPFTADKCRTLAGK 122 (245)
Q Consensus 45 Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ilSHG~~i~--~I~~~f~~~~c~~L~~K 122 (245)
.|+.=++.+.+.+++.|.+|.++ |++..+..+.+.++ .++|.+++..-++|+.+- ++++.+.. ..|.+|
T Consensus 13 nT~~~A~~ia~~l~~~g~~v~~~-~~~~~~~~~~~~~~-----~~~d~ii~Gspty~g~~p~~~fl~~l~~---~~l~gk 83 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTGVAVEMV-DLRAVDPQELIEAV-----SSARGIVLGTPPSQPSEAVATALSTIFA---AAHNKQ 83 (161)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEE-ETTTCCHHHHHHHH-----HHCSEEEEECCBSSCCHHHHHHHHHHHH---HCCTTS
T ss_pred HHHHHHHHHHHHHHhCCCeEEEE-ECCCCCHHHHHHHH-----HhCCEEEEEcCCcCCchhHHHHHHHHHh---hhhCCC
Confidence 46677788999999999988766 34433444443333 345788888888987633 33333322 136777
Q ss_pred ceEEE
Q psy13938 123 PKIFF 127 (245)
Q Consensus 123 PKlf~ 127 (245)
|=.+|
T Consensus 84 ~v~~f 88 (161)
T 3hly_A 84 AIGLF 88 (161)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 64444
No 121
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=20.79 E-value=2.5e+02 Score=24.31 Aligned_cols=64 Identities=6% Similarity=0.053 Sum_probs=45.4
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCcHHHHHHHHHHHHhCCcEEEEEeCCCHHHHHHHHHHHhhhcCCCCceEEEE
Q psy13938 22 PRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVIT 96 (245)
Q Consensus 22 ~~~G~aLIInn~~F~~~~~~~R~Gs~~D~~~l~~~f~~LgF~V~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~ 96 (245)
.+.|+++|.-+ ++.+|..=++.-.+..+++|++.+.+.=...+|+.+.+.++-+. .+.+.++|-
T Consensus 35 ~~P~Lavilvg---------~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d--~~v~GIlvq 98 (320)
T 1edz_A 35 QGPLLVGFLAN---------NDPAAKMYATWTQKTSESMGFRYDLRVIEDKDFLEEAIIQANGD--DSVNGIMVY 98 (320)
T ss_dssp CCCEEEEEECC---------CCHHHHHHHHHHHHHHHHHTCEEEEEECSSGGGHHHHHHHHHHC--TTCCEEEEC
T ss_pred CCCeEEEEEEC---------CchhHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHcCC--CCCCEEEEe
Confidence 34789999633 45567777889999999999999888755556688888877643 344444443
No 122
>2fv4_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; NMR {Saccharomyces cerevisiae} SCOP: d.300.1.2
Probab=20.73 E-value=46 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHH-HHHHhCCcEEE
Q psy13938 42 PRPGSGADVKNLE-AAFYALGFEVS 65 (245)
Q Consensus 42 ~R~Gs~~D~~~l~-~~f~~LgF~V~ 65 (245)
.+...+.|...|+ +++++||+++.
T Consensus 13 ~~~~~~~d~~~LKLkLYrsLGv~ld 37 (77)
T 2fv4_B 13 SAVTPEANENILKLKLYRSLGVILD 37 (77)
T ss_dssp -------CTHHHHHHHHHHTTEEEE
T ss_pred hhcCcccchHHHHHHHHHhcCEEEe
Confidence 4556778888877 79999999876
No 123
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=20.41 E-value=1.6e+02 Score=22.64 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCcEEEEEeC--CCHHHHHHHHHHHh
Q psy13938 50 VKNLEAAFYALGFEVSVYTN--PEFREITEILSNLS 83 (245)
Q Consensus 50 ~~~l~~~f~~LgF~V~~~~n--lt~~em~~~l~~~~ 83 (245)
..-|.+.|+++||+|..+.= =..++|.+.+++..
T Consensus 42 g~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~ 77 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDAL 77 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH
Confidence 34699999999999976542 24467777777654
Done!