RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13938
(245 letters)
>gnl|CDD|237997 cd00032, CASc, Caspase, interleukin-1 beta converting enzyme (ICE)
homologues; Cysteine-dependent aspartate-directed
proteases that mediate programmed cell death
(apoptosis). Caspases are synthesized as inactive
zymogens and activated by proteolysis of the peptide
backbone adjacent to an aspartate. The resulting two
subunits associate to form an (alpha)2(beta)2-tetramer
which is the active enzyme. Activation of caspases can
be mediated by other caspase homologs.
Length = 243
Score = 187 bits (476), Expect = 3e-59
Identities = 66/177 (37%), Positives = 86/177 (48%), Gaps = 18/177 (10%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREIT 76
Y M+ RRG AL+ N++ F + R G+ D +NL F +LG+EV V N EI
Sbjct: 2 YKMNSKRRGLALIINNENF-DKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEIL 60
Query: 77 EILSNLSQEDHSDADCLVITVLTHGLGE------------QKLWLPFTADKCRTLAGKPK 124
E L + DHSD+D V +L+HG ++ F D C +LAGKPK
Sbjct: 61 EELKEFASPDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPK 120
Query: 125 IFFIQACRGTKLDGGV-----RLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDSL 176
+FFIQACRG +LD GV IP ADFL+AYSTV +
Sbjct: 121 LFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYV 177
>gnl|CDD|214521 smart00115, CASc, Caspase, interleukin-1 beta converting enzyme
(ICE) homologues. Cysteine aspartases that mediate
programmed cell death (apoptosis). Caspases are
synthesised as zymogens and activated by proteolysis of
the peptide backbone adjacent to an aspartate. The
resulting two subunits associate to form an
(alpha)2(beta)2-tetramer which is the active enzyme.
Activation of caspases can be mediated by other caspase
homologues.
Length = 241
Score = 163 bits (416), Expect = 3e-50
Identities = 69/176 (39%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 17 YNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREIT 76
Y M+ RG AL+ N++ F ++ R G+ D +NL F +LG+EV V N E+
Sbjct: 1 YKMNSKPRGLALIINNENF--HSLPRRNGTDVDAENLTELFQSLGYEVQVKNNLTAEEML 58
Query: 77 EILSNLSQ-EDHSDADCLVITVLTHGLGE------------QKLWLPFTADKCRTLAGKP 123
E L + +HSD+D V +L+HG +++ F D C +LAGKP
Sbjct: 59 EELKEFAAMPEHSDSDSFVCVLLSHGEEGGIYGTDGDPLPLDEIFSLFNGDNCPSLAGKP 118
Query: 124 KIFFIQACRGTKLDGGVRLV-SRANTETDAGVNA-YKIPSYADFLIAYSTVEDSLL 177
K+FFIQACRG +LDGGV + S A+ E++ +A YKIP ADFL AYST +
Sbjct: 119 KLFFIQACRGDELDGGVPVEDSVADPESEGEDDAIYKIPVEADFLAAYSTTPGYVS 174
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain.
Length = 228
Score = 133 bits (337), Expect = 2e-38
Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 20/167 (11%)
Query: 25 GRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQ 84
G AL+ ++ F + P G D + L LGFEV V+ + EI L +
Sbjct: 1 GLALIIGNNYF--GHAAPLRGCDNDAEALAKLLQRLGFEVEVFDDLTAEEIRRALREFAA 58
Query: 85 EDHSDADCLVITVLTHGLGE------------QKLWLPFTADKCRTLAGKPKIFFIQACR 132
D V+ HG+ L F C +L GKPK+F I ACR
Sbjct: 59 -RADPGDSFVVVYSGHGVQGEVYGGDGYLVPVDALDDVFNGLNCPSLKGKPKLFIIDACR 117
Query: 133 GTKLDGGVRLVSRANTETDAGVNA-----YKIPSYADFLIAYSTVED 174
G LD GV+ S ++ E+++ ++ KIP+ ADFL+AYST
Sbjct: 118 GGPLDDGVKSDSGSSGESESVDDSEAAGLSKIPAPADFLVAYSTTPG 164
>gnl|CDD|223678 COG0605, SodA, Superoxide dismutase [Inorganic ion transport and
metabolism].
Length = 204
Score = 31.5 bits (72), Expect = 0.25
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 7 PMPVAKDSAEYNMSHPRRGRALVF-------NHDEFQMDNMTPRPGSGADVKNLEAA 56
+ S E + A +F NH F +N++P G G L AA
Sbjct: 48 TEELEDLSLEEIIKKLAGLPAALFNNAGGHWNHSLFW-ENLSPGGGGGKPTGELAAA 103
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 32.0 bits (73), Expect = 0.31
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 2 EDIEVPMPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALG 61
ED E+ MP H +R + F P + ++ A++
Sbjct: 209 EDCEILMPEVAIPYAEQDPHSQRLLD-ACDLRNF--------PITDEQIRRARRAYFG-- 257
Query: 62 FEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHG--LGEQKLW 108
+S Y + + E+ + L Q D D +++ HG LGE+ LW
Sbjct: 258 -AIS-YIDDKIGELLDTLEETRQAD----DTIIVFTSDHGDMLGERGLW 300
>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
Length = 405
Score = 30.1 bits (68), Expect = 1.1
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 36 QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNP 70
Q+D ++ +G D+ LE AF A G V +++NP
Sbjct: 154 QLDYLSADKRAGLDLDQLEEAFKA-GVRVFLFSNP 187
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.1 bits (65), Expect = 2.3
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 94 VITVLTHGLGEQKL---WLPFTADKCRTLAGKPKIFFIQA----CRGTKLDGGVRL---- 142
V+ LTH L +Q+L +L FT + GK + I A C G +GG+
Sbjct: 24 VVRALTHALEQQRLHHAYL-FTGTRG---VGKTTLSRILAKSLNCTGADGEGGITAQPCG 79
Query: 143 VSRANTETDAG 153
RA TE DAG
Sbjct: 80 QCRACTEIDAG 90
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 28.2 bits (64), Expect = 4.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 23 RRGRALVFNHDEFQMDNMTPRPGSGAD-VKNLEAAFYALG 61
R+G +V + DE PRP + A+ + L AF G
Sbjct: 207 RKGDPVVVDTDEH------PRPDTTAESLAKLRPAFDKDG 240
>gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed.
Length = 275
Score = 27.0 bits (60), Expect = 9.1
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 134 TKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDSLLAC 179
+K +G +RL +R N E K P + I TV D L
Sbjct: 34 SKNNGLIRLYTRHNNEV-----TAKFPELLNLDIPDGTVLDGELIV 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,272,700
Number of extensions: 1123506
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 18
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)